Multiple sequence alignment - TraesCS5A01G413700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G413700 chr5A 100.000 6751 0 0 1 6751 601725063 601731813 0.000000e+00 12467.0
1 TraesCS5A01G413700 chr5A 83.550 924 126 18 1908 2817 602331112 602332023 0.000000e+00 841.0
2 TraesCS5A01G413700 chr5A 82.105 855 126 15 3508 4347 602344556 602345398 0.000000e+00 706.0
3 TraesCS5A01G413700 chr5A 87.726 554 43 9 4742 5283 602249364 602249904 2.070000e-174 623.0
4 TraesCS5A01G413700 chr5A 90.141 426 30 4 3094 3519 602248345 602248758 1.660000e-150 544.0
5 TraesCS5A01G413700 chr5A 84.307 548 49 18 4201 4740 602334260 602334778 1.010000e-137 501.0
6 TraesCS5A01G413700 chr5A 79.598 647 74 15 5289 5930 602249954 602250547 1.750000e-110 411.0
7 TraesCS5A01G413700 chr5A 96.522 230 7 1 6203 6432 601736452 601736680 4.940000e-101 379.0
8 TraesCS5A01G413700 chr5A 89.610 231 23 1 4451 4680 602249016 602249246 6.620000e-75 292.0
9 TraesCS5A01G413700 chr5A 83.051 295 23 16 997 1276 602246161 602246443 6.760000e-60 243.0
10 TraesCS5A01G413700 chr5A 90.385 156 11 4 2890 3044 602248212 602248364 1.150000e-47 202.0
11 TraesCS5A01G413700 chr5A 74.948 479 80 24 4738 5206 602345718 602346166 4.160000e-42 183.0
12 TraesCS5A01G413700 chr5A 98.058 103 1 1 6649 6751 601731600 601731701 1.930000e-40 178.0
13 TraesCS5A01G413700 chr5A 75.455 440 53 33 4592 5004 601998017 601998428 5.420000e-36 163.0
14 TraesCS5A01G413700 chr5B 96.679 2981 83 11 2890 5863 591555126 591558097 0.000000e+00 4942.0
15 TraesCS5A01G413700 chr5B 95.894 1023 39 3 1865 2885 591554062 591555083 0.000000e+00 1653.0
16 TraesCS5A01G413700 chr5B 82.318 1165 141 41 4738 5880 591638973 591640094 0.000000e+00 950.0
17 TraesCS5A01G413700 chr5B 83.610 964 125 22 1872 2816 591780883 591781832 0.000000e+00 874.0
18 TraesCS5A01G413700 chr5B 81.610 1006 83 53 595 1553 591552550 591553500 0.000000e+00 739.0
19 TraesCS5A01G413700 chr5B 81.604 848 129 16 3508 4341 591829773 591830607 0.000000e+00 676.0
20 TraesCS5A01G413700 chr5B 83.548 620 73 19 2220 2826 591828685 591829288 2.750000e-153 553.0
21 TraesCS5A01G413700 chr5B 86.570 484 61 4 4200 4679 591652644 591653127 1.290000e-146 531.0
22 TraesCS5A01G413700 chr5B 89.873 316 10 7 1551 1863 591553659 591553955 2.950000e-103 387.0
23 TraesCS5A01G413700 chr5B 86.047 344 43 3 4867 5209 591819031 591819370 1.380000e-96 364.0
24 TraesCS5A01G413700 chr5B 97.857 140 3 0 456 595 399275852 399275991 6.760000e-60 243.0
25 TraesCS5A01G413700 chr5B 78.738 301 35 10 980 1252 591779785 591780084 2.500000e-39 174.0
26 TraesCS5A01G413700 chr5B 79.273 275 28 15 4211 4479 591783841 591784092 1.510000e-36 165.0
27 TraesCS5A01G413700 chr5B 97.143 35 1 0 4707 4741 591653189 591653223 7.310000e-05 60.2
28 TraesCS5A01G413700 chr5D 96.370 2204 65 10 3766 5965 482246133 482248325 0.000000e+00 3613.0
29 TraesCS5A01G413700 chr5D 91.620 1611 74 21 1276 2882 482243607 482245160 0.000000e+00 2170.0
30 TraesCS5A01G413700 chr5D 87.176 1310 117 20 3093 4391 482411054 482412323 0.000000e+00 1441.0
31 TraesCS5A01G413700 chr5D 97.486 716 13 2 3057 3767 482245336 482246051 0.000000e+00 1218.0
32 TraesCS5A01G413700 chr5D 94.687 734 37 2 2086 2817 482410058 482410791 0.000000e+00 1138.0
33 TraesCS5A01G413700 chr5D 85.522 967 119 16 1866 2817 482549152 482550112 0.000000e+00 990.0
34 TraesCS5A01G413700 chr5D 90.071 705 19 20 595 1276 482242897 482243573 0.000000e+00 867.0
35 TraesCS5A01G413700 chr5D 90.792 543 39 4 4738 5272 482412684 482413223 0.000000e+00 715.0
36 TraesCS5A01G413700 chr5D 80.693 953 137 29 3419 4347 482589603 482590532 0.000000e+00 697.0
37 TraesCS5A01G413700 chr5D 89.770 479 26 4 1 457 482242424 482242901 5.830000e-165 592.0
38 TraesCS5A01G413700 chr5D 80.917 807 81 38 4201 4972 482555397 482556165 2.730000e-158 569.0
39 TraesCS5A01G413700 chr5D 87.397 484 57 4 4200 4679 482297850 482298333 2.750000e-153 553.0
40 TraesCS5A01G413700 chr5D 83.633 611 73 15 2220 2818 482588604 482589199 3.560000e-152 549.0
41 TraesCS5A01G413700 chr5D 83.395 542 61 17 1905 2426 482409528 482410060 6.130000e-130 475.0
42 TraesCS5A01G413700 chr5D 88.663 344 37 2 4867 5209 482566069 482566411 1.050000e-112 418.0
43 TraesCS5A01G413700 chr5D 95.197 229 7 4 5976 6202 482248304 482248530 6.440000e-95 359.0
44 TraesCS5A01G413700 chr5D 83.838 396 30 17 5575 5965 482413633 482413999 5.010000e-91 346.0
45 TraesCS5A01G413700 chr5D 92.437 238 17 1 4443 4680 482412334 482412570 8.390000e-89 339.0
46 TraesCS5A01G413700 chr5D 91.489 188 13 3 2890 3075 482245206 482245392 8.690000e-64 255.0
47 TraesCS5A01G413700 chr5D 82.877 292 26 9 988 1276 482408525 482408795 2.430000e-59 241.0
48 TraesCS5A01G413700 chr5D 80.597 335 28 21 971 1276 482548195 482548521 2.450000e-54 224.0
49 TraesCS5A01G413700 chr5D 89.744 156 11 5 2890 3044 482410923 482411074 1.920000e-45 195.0
50 TraesCS5A01G413700 chr5D 74.041 339 55 22 2733 3044 482294447 482294779 2.570000e-19 108.0
51 TraesCS5A01G413700 chr5D 97.143 35 1 0 4707 4741 482298412 482298446 7.310000e-05 60.2
52 TraesCS5A01G413700 chr5D 97.143 35 1 0 4706 4740 482412616 482412650 7.310000e-05 60.2
53 TraesCS5A01G413700 chr3B 83.053 1009 139 16 3472 4472 821094045 821093061 0.000000e+00 887.0
54 TraesCS5A01G413700 chr3B 82.895 380 48 13 6272 6644 556428063 556427694 6.530000e-85 326.0
55 TraesCS5A01G413700 chr3B 87.654 243 23 7 6405 6645 572256134 572256371 6.670000e-70 276.0
56 TraesCS5A01G413700 chr3D 81.605 1022 134 20 3472 4472 609933381 609932393 0.000000e+00 797.0
57 TraesCS5A01G413700 chrUn 94.511 419 21 2 2086 2502 476972600 476972182 0.000000e+00 645.0
58 TraesCS5A01G413700 chrUn 89.328 253 21 4 6391 6641 395522049 395522297 5.080000e-81 313.0
59 TraesCS5A01G413700 chr4B 88.599 421 39 8 6221 6639 638842729 638842316 2.810000e-138 503.0
60 TraesCS5A01G413700 chr7D 87.356 435 38 12 6221 6641 632604393 632604824 3.660000e-132 483.0
61 TraesCS5A01G413700 chr2B 90.114 263 23 2 6203 6465 42835299 42835558 8.390000e-89 339.0
62 TraesCS5A01G413700 chr2B 90.909 253 17 4 6391 6641 42831185 42831433 1.080000e-87 335.0
63 TraesCS5A01G413700 chr2B 89.354 263 25 2 6203 6465 42767090 42767349 1.820000e-85 327.0
64 TraesCS5A01G413700 chr2B 89.844 256 23 2 6203 6458 42697147 42697399 6.530000e-85 326.0
65 TraesCS5A01G413700 chr2B 90.119 253 19 4 6391 6641 42762978 42763226 2.350000e-84 324.0
66 TraesCS5A01G413700 chr2B 87.072 263 29 3 6203 6465 42728987 42729244 6.620000e-75 292.0
67 TraesCS5A01G413700 chr2B 87.072 263 29 3 6203 6465 42796837 42797094 6.620000e-75 292.0
68 TraesCS5A01G413700 chr2B 97.241 145 3 1 455 598 397925305 397925161 1.880000e-60 244.0
69 TraesCS5A01G413700 chr2B 97.857 140 3 0 456 595 268011184 268011323 6.760000e-60 243.0
70 TraesCS5A01G413700 chr7B 87.705 244 23 7 6404 6645 696270650 696270412 1.850000e-70 278.0
71 TraesCS5A01G413700 chr7B 96.350 137 5 0 456 592 653983789 653983925 6.810000e-55 226.0
72 TraesCS5A01G413700 chr7A 86.531 245 26 7 6403 6645 54961016 54960777 5.190000e-66 263.0
73 TraesCS5A01G413700 chr2A 99.286 140 1 0 456 595 46095430 46095291 3.120000e-63 254.0
74 TraesCS5A01G413700 chr2A 95.714 140 6 0 456 595 218122067 218121928 6.810000e-55 226.0
75 TraesCS5A01G413700 chr4A 98.571 140 2 0 456 595 173703797 173703936 1.450000e-61 248.0
76 TraesCS5A01G413700 chr6A 97.842 139 3 0 455 593 54183658 54183520 2.430000e-59 241.0
77 TraesCS5A01G413700 chr1B 97.143 140 4 0 456 595 356213903 356213764 3.150000e-58 237.0
78 TraesCS5A01G413700 chr2D 86.747 83 7 1 263 345 643953120 643953198 9.330000e-14 89.8
79 TraesCS5A01G413700 chr3A 88.679 53 5 1 1063 1115 293042885 293042834 5.650000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G413700 chr5A 601725063 601731813 6750 False 6322.500000 12467 99.029000 1 6751 2 chr5A.!!$F3 6750
1 TraesCS5A01G413700 chr5A 602331112 602334778 3666 False 671.000000 841 83.928500 1908 4740 2 chr5A.!!$F5 2832
2 TraesCS5A01G413700 chr5A 602344556 602346166 1610 False 444.500000 706 78.526500 3508 5206 2 chr5A.!!$F6 1698
3 TraesCS5A01G413700 chr5A 602246161 602250547 4386 False 385.833333 623 86.751833 997 5930 6 chr5A.!!$F4 4933
4 TraesCS5A01G413700 chr5B 591552550 591558097 5547 False 1930.250000 4942 91.014000 595 5863 4 chr5B.!!$F4 5268
5 TraesCS5A01G413700 chr5B 591638973 591640094 1121 False 950.000000 950 82.318000 4738 5880 1 chr5B.!!$F2 1142
6 TraesCS5A01G413700 chr5B 591828685 591830607 1922 False 614.500000 676 82.576000 2220 4341 2 chr5B.!!$F7 2121
7 TraesCS5A01G413700 chr5B 591779785 591784092 4307 False 404.333333 874 80.540333 980 4479 3 chr5B.!!$F6 3499
8 TraesCS5A01G413700 chr5B 591652644 591653223 579 False 295.600000 531 91.856500 4200 4741 2 chr5B.!!$F5 541
9 TraesCS5A01G413700 chr5D 482242424 482248530 6106 False 1296.285714 3613 93.143286 1 6202 7 chr5D.!!$F3 6201
10 TraesCS5A01G413700 chr5D 482588604 482590532 1928 False 623.000000 697 82.163000 2220 4347 2 chr5D.!!$F7 2127
11 TraesCS5A01G413700 chr5D 482548195 482550112 1917 False 607.000000 990 83.059500 971 2817 2 chr5D.!!$F6 1846
12 TraesCS5A01G413700 chr5D 482555397 482556165 768 False 569.000000 569 80.917000 4201 4972 1 chr5D.!!$F1 771
13 TraesCS5A01G413700 chr5D 482408525 482413999 5474 False 550.022222 1441 89.121000 988 5965 9 chr5D.!!$F5 4977
14 TraesCS5A01G413700 chr5D 482294447 482298446 3999 False 240.400000 553 86.193667 2733 4741 3 chr5D.!!$F4 2008
15 TraesCS5A01G413700 chr3B 821093061 821094045 984 True 887.000000 887 83.053000 3472 4472 1 chr3B.!!$R2 1000
16 TraesCS5A01G413700 chr3D 609932393 609933381 988 True 797.000000 797 81.605000 3472 4472 1 chr3D.!!$R1 1000
17 TraesCS5A01G413700 chr2B 42831185 42835558 4373 False 337.000000 339 90.511500 6203 6641 2 chr2B.!!$F6 438
18 TraesCS5A01G413700 chr2B 42762978 42767349 4371 False 325.500000 327 89.736500 6203 6641 2 chr2B.!!$F5 438

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 486 0.034896 CGTGTCTACAAAGGGCCTGT 59.965 55.000 6.92 4.98 0.00 4.00 F
475 498 0.035915 GGGCCTGTTTGGAGACTCTC 60.036 60.000 0.84 0.00 38.35 3.20 F
1292 1471 0.171231 GGCTCCGCATTTCCAACTTC 59.829 55.000 0.00 0.00 0.00 3.01 F
1508 1715 0.907486 CTGCTCCAGAGGATGTTGGA 59.093 55.000 0.00 0.00 41.06 3.53 F
1509 1716 1.280133 CTGCTCCAGAGGATGTTGGAA 59.720 52.381 0.00 0.00 42.61 3.53 F
2589 3771 1.941668 GCGGACTTCACCAAAGAGGAG 60.942 57.143 0.00 0.00 41.22 3.69 F
2892 4124 2.203938 AGGGAGGGCCGAAGAACA 60.204 61.111 0.00 0.00 33.83 3.18 F
4331 8360 2.672651 CCCTGTCCGTGCAATGCA 60.673 61.111 2.72 2.72 35.60 3.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2284 3456 1.345741 TGAGGCAGTGACAAGAGGAAG 59.654 52.381 0.00 0.00 0.00 3.46 R
2427 3609 4.400251 CCATTCTGCCATTGTACTGAACAT 59.600 41.667 0.00 0.00 38.10 2.71 R
2916 4196 1.784525 AAGGACGAGCTTGTTCTTCG 58.215 50.000 20.52 4.77 31.98 3.79 R
3272 4845 3.311871 GTCAGATTCGAAGTACCGCTAGA 59.688 47.826 3.35 0.00 0.00 2.43 R
3777 5509 8.182881 GCTGGATATCTTATTTCAGCAATGATC 58.817 37.037 18.73 0.00 44.68 2.92 R
4390 8422 2.677524 ATGTTGTGCGGCCATGCT 60.678 55.556 2.24 0.00 35.36 3.79 R
4422 8454 3.340814 ACAAAGATCAGCGATGGAACT 57.659 42.857 0.00 0.00 0.00 3.01 R
6549 10879 0.035439 CGGGCTGAAGGGAAAGCTTA 60.035 55.000 0.00 0.00 39.46 3.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.313772 TGTTTGGATTGTGGTGTCCG 58.686 50.000 0.00 0.00 37.32 4.79
26 27 0.695924 TTGGATTGTGGTGTCCGGAT 59.304 50.000 7.81 0.00 37.32 4.18
37 38 2.817258 GGTGTCCGGATCATTTGTTTCA 59.183 45.455 7.81 0.00 0.00 2.69
44 45 7.142680 GTCCGGATCATTTGTTTCAACTTTTA 58.857 34.615 7.81 0.00 0.00 1.52
67 68 3.865164 TCATTCAATTGAGACATCGTCGG 59.135 43.478 8.41 0.00 37.67 4.79
90 91 2.623915 CGAAGTGGTCCGGACGTCT 61.624 63.158 27.68 23.21 0.00 4.18
127 128 1.066136 GACAAACGCGAGGGAGTTAC 58.934 55.000 15.93 0.00 34.96 2.50
129 130 1.001633 ACAAACGCGAGGGAGTTACAT 59.998 47.619 15.93 0.00 34.96 2.29
136 137 1.203994 CGAGGGAGTTACATCGGTGTT 59.796 52.381 6.64 0.00 39.77 3.32
152 153 3.492656 CGGTGTTCGGATATCCACTTGAT 60.493 47.826 21.70 0.00 34.76 2.57
231 232 2.112190 CCTACCCTCTCTTTCTCCCAC 58.888 57.143 0.00 0.00 0.00 4.61
244 245 1.986631 TCTCCCACCCGGACAAATAAA 59.013 47.619 0.73 0.00 34.86 1.40
284 285 0.692419 ATTGGATGGCTCTCTCCCGT 60.692 55.000 0.00 0.00 0.00 5.28
325 326 5.522460 ACGTCCGGACATAAAAATAGACATG 59.478 40.000 32.80 13.58 0.00 3.21
367 387 4.782252 CGTAAGTCGGTTTCTTCAACAA 57.218 40.909 0.00 0.00 37.07 2.83
400 420 4.970662 ATCATTCATCCGGTTGACTTTG 57.029 40.909 14.83 12.40 0.00 2.77
444 467 8.570068 TGTGAATTTCTATGTAAAGTAACCCC 57.430 34.615 0.00 0.00 0.00 4.95
445 468 7.334921 TGTGAATTTCTATGTAAAGTAACCCCG 59.665 37.037 0.00 0.00 0.00 5.73
452 475 4.519540 TGTAAAGTAACCCCGTGTCTAC 57.480 45.455 0.00 0.00 0.00 2.59
453 476 3.894427 TGTAAAGTAACCCCGTGTCTACA 59.106 43.478 0.00 0.00 0.00 2.74
454 477 4.343526 TGTAAAGTAACCCCGTGTCTACAA 59.656 41.667 0.00 0.00 0.00 2.41
455 478 4.420522 AAAGTAACCCCGTGTCTACAAA 57.579 40.909 0.00 0.00 0.00 2.83
456 479 3.672767 AGTAACCCCGTGTCTACAAAG 57.327 47.619 0.00 0.00 0.00 2.77
457 480 2.301009 AGTAACCCCGTGTCTACAAAGG 59.699 50.000 0.32 0.32 0.00 3.11
458 481 0.399075 AACCCCGTGTCTACAAAGGG 59.601 55.000 14.36 14.36 42.94 3.95
459 482 1.376812 CCCCGTGTCTACAAAGGGC 60.377 63.158 15.73 0.00 41.77 5.19
460 483 1.376812 CCCGTGTCTACAAAGGGCC 60.377 63.158 10.75 0.00 38.59 5.80
461 484 1.677552 CCGTGTCTACAAAGGGCCT 59.322 57.895 0.00 0.00 0.00 5.19
462 485 0.673644 CCGTGTCTACAAAGGGCCTG 60.674 60.000 6.92 0.00 0.00 4.85
463 486 0.034896 CGTGTCTACAAAGGGCCTGT 59.965 55.000 6.92 4.98 0.00 4.00
464 487 1.542547 CGTGTCTACAAAGGGCCTGTT 60.543 52.381 6.92 0.26 0.00 3.16
465 488 2.583143 GTGTCTACAAAGGGCCTGTTT 58.417 47.619 6.92 0.00 0.00 2.83
466 489 2.293399 GTGTCTACAAAGGGCCTGTTTG 59.707 50.000 22.28 22.28 40.18 2.93
467 490 1.886542 GTCTACAAAGGGCCTGTTTGG 59.113 52.381 25.49 4.97 38.90 3.28
468 491 1.777878 TCTACAAAGGGCCTGTTTGGA 59.222 47.619 25.49 19.93 38.90 3.53
469 492 2.162681 CTACAAAGGGCCTGTTTGGAG 58.837 52.381 25.49 23.67 39.04 3.86
470 493 0.555769 ACAAAGGGCCTGTTTGGAGA 59.444 50.000 25.49 0.00 38.90 3.71
471 494 0.961753 CAAAGGGCCTGTTTGGAGAC 59.038 55.000 6.92 0.00 38.35 3.36
472 495 0.853530 AAAGGGCCTGTTTGGAGACT 59.146 50.000 6.92 0.00 38.35 3.24
473 496 0.402121 AAGGGCCTGTTTGGAGACTC 59.598 55.000 6.92 0.00 38.35 3.36
474 497 0.474660 AGGGCCTGTTTGGAGACTCT 60.475 55.000 4.50 0.00 38.35 3.24
475 498 0.035915 GGGCCTGTTTGGAGACTCTC 60.036 60.000 0.84 0.00 38.35 3.20
483 506 2.835895 GGAGACTCTCCCGCTCCC 60.836 72.222 13.65 0.00 44.36 4.30
484 507 2.835895 GAGACTCTCCCGCTCCCC 60.836 72.222 0.00 0.00 0.00 4.81
485 508 3.663815 GAGACTCTCCCGCTCCCCA 62.664 68.421 0.00 0.00 0.00 4.96
486 509 2.683933 GACTCTCCCGCTCCCCAA 60.684 66.667 0.00 0.00 0.00 4.12
487 510 2.685380 ACTCTCCCGCTCCCCAAG 60.685 66.667 0.00 0.00 0.00 3.61
488 511 2.685380 CTCTCCCGCTCCCCAAGT 60.685 66.667 0.00 0.00 0.00 3.16
489 512 2.683933 TCTCCCGCTCCCCAAGTC 60.684 66.667 0.00 0.00 0.00 3.01
490 513 3.787001 CTCCCGCTCCCCAAGTCC 61.787 72.222 0.00 0.00 0.00 3.85
494 517 4.821589 CGCTCCCCAAGTCCGCTC 62.822 72.222 0.00 0.00 0.00 5.03
495 518 4.475135 GCTCCCCAAGTCCGCTCC 62.475 72.222 0.00 0.00 0.00 4.70
496 519 3.003173 CTCCCCAAGTCCGCTCCA 61.003 66.667 0.00 0.00 0.00 3.86
497 520 3.003173 TCCCCAAGTCCGCTCCAG 61.003 66.667 0.00 0.00 0.00 3.86
498 521 4.101448 CCCCAAGTCCGCTCCAGG 62.101 72.222 0.00 0.00 0.00 4.45
499 522 3.003173 CCCAAGTCCGCTCCAGGA 61.003 66.667 0.00 0.00 38.11 3.86
500 523 2.581354 CCAAGTCCGCTCCAGGAG 59.419 66.667 12.81 12.81 41.68 3.69
501 524 2.286523 CCAAGTCCGCTCCAGGAGT 61.287 63.158 18.37 0.00 45.39 3.85
502 525 4.217112 AAGTCCGCTCCAGGAGTT 57.783 55.556 18.37 0.70 46.18 3.01
503 526 3.382111 AGTCCGCTCCAGGAGTTG 58.618 61.111 18.37 10.72 40.92 3.16
511 534 3.488423 CCAGGAGTTGGTGGAGCT 58.512 61.111 0.00 0.00 42.41 4.09
512 535 1.002868 CCAGGAGTTGGTGGAGCTG 60.003 63.158 0.00 0.00 42.41 4.24
513 536 1.757306 CAGGAGTTGGTGGAGCTGT 59.243 57.895 0.00 0.00 0.00 4.40
514 537 0.976641 CAGGAGTTGGTGGAGCTGTA 59.023 55.000 0.00 0.00 0.00 2.74
515 538 1.066573 CAGGAGTTGGTGGAGCTGTAG 60.067 57.143 0.00 0.00 0.00 2.74
516 539 0.391793 GGAGTTGGTGGAGCTGTAGC 60.392 60.000 0.00 0.00 42.49 3.58
530 553 4.622701 GCTGTAGCTAAAAATGGTGGAG 57.377 45.455 0.00 0.00 38.21 3.86
531 554 4.010349 GCTGTAGCTAAAAATGGTGGAGT 58.990 43.478 0.00 0.00 38.21 3.85
532 555 4.142600 GCTGTAGCTAAAAATGGTGGAGTG 60.143 45.833 0.00 0.00 38.21 3.51
533 556 4.331968 TGTAGCTAAAAATGGTGGAGTGG 58.668 43.478 0.00 0.00 0.00 4.00
534 557 2.807676 AGCTAAAAATGGTGGAGTGGG 58.192 47.619 0.00 0.00 0.00 4.61
535 558 1.824852 GCTAAAAATGGTGGAGTGGGG 59.175 52.381 0.00 0.00 0.00 4.96
536 559 2.556559 GCTAAAAATGGTGGAGTGGGGA 60.557 50.000 0.00 0.00 0.00 4.81
537 560 2.785357 AAAAATGGTGGAGTGGGGAA 57.215 45.000 0.00 0.00 0.00 3.97
538 561 2.785357 AAAATGGTGGAGTGGGGAAA 57.215 45.000 0.00 0.00 0.00 3.13
539 562 2.785357 AAATGGTGGAGTGGGGAAAA 57.215 45.000 0.00 0.00 0.00 2.29
540 563 2.309136 AATGGTGGAGTGGGGAAAAG 57.691 50.000 0.00 0.00 0.00 2.27
541 564 0.409484 ATGGTGGAGTGGGGAAAAGG 59.591 55.000 0.00 0.00 0.00 3.11
542 565 1.606601 GGTGGAGTGGGGAAAAGGC 60.607 63.158 0.00 0.00 0.00 4.35
543 566 1.152830 GTGGAGTGGGGAAAAGGCA 59.847 57.895 0.00 0.00 0.00 4.75
544 567 0.895559 GTGGAGTGGGGAAAAGGCAG 60.896 60.000 0.00 0.00 0.00 4.85
545 568 1.979155 GGAGTGGGGAAAAGGCAGC 60.979 63.158 0.00 0.00 0.00 5.25
546 569 1.075659 GAGTGGGGAAAAGGCAGCT 59.924 57.895 0.00 0.00 0.00 4.24
547 570 0.962855 GAGTGGGGAAAAGGCAGCTC 60.963 60.000 0.00 0.00 0.00 4.09
548 571 1.979155 GTGGGGAAAAGGCAGCTCC 60.979 63.158 0.00 0.00 0.00 4.70
549 572 2.440599 GGGGAAAAGGCAGCTCCA 59.559 61.111 1.09 0.00 37.29 3.86
550 573 1.979155 GGGGAAAAGGCAGCTCCAC 60.979 63.158 1.09 0.00 37.29 4.02
551 574 1.228552 GGGAAAAGGCAGCTCCACA 60.229 57.895 1.09 0.00 37.29 4.17
552 575 0.827507 GGGAAAAGGCAGCTCCACAA 60.828 55.000 1.09 0.00 37.29 3.33
553 576 1.039856 GGAAAAGGCAGCTCCACAAA 58.960 50.000 5.21 0.00 37.29 2.83
554 577 1.620323 GGAAAAGGCAGCTCCACAAAT 59.380 47.619 5.21 0.00 37.29 2.32
555 578 2.037641 GGAAAAGGCAGCTCCACAAATT 59.962 45.455 5.21 0.00 37.29 1.82
556 579 3.320626 GAAAAGGCAGCTCCACAAATTC 58.679 45.455 5.21 0.00 37.29 2.17
557 580 2.299326 AAGGCAGCTCCACAAATTCT 57.701 45.000 5.21 0.00 37.29 2.40
558 581 1.831580 AGGCAGCTCCACAAATTCTC 58.168 50.000 5.21 0.00 37.29 2.87
559 582 1.074405 AGGCAGCTCCACAAATTCTCA 59.926 47.619 5.21 0.00 37.29 3.27
560 583 1.471684 GGCAGCTCCACAAATTCTCAG 59.528 52.381 0.00 0.00 34.01 3.35
561 584 2.430465 GCAGCTCCACAAATTCTCAGA 58.570 47.619 0.00 0.00 0.00 3.27
562 585 3.015327 GCAGCTCCACAAATTCTCAGAT 58.985 45.455 0.00 0.00 0.00 2.90
563 586 3.442977 GCAGCTCCACAAATTCTCAGATT 59.557 43.478 0.00 0.00 0.00 2.40
564 587 4.082354 GCAGCTCCACAAATTCTCAGATTT 60.082 41.667 0.00 0.00 0.00 2.17
565 588 5.638783 CAGCTCCACAAATTCTCAGATTTC 58.361 41.667 0.00 0.00 0.00 2.17
566 589 5.182570 CAGCTCCACAAATTCTCAGATTTCA 59.817 40.000 0.00 0.00 0.00 2.69
567 590 5.415077 AGCTCCACAAATTCTCAGATTTCAG 59.585 40.000 0.00 0.00 0.00 3.02
568 591 5.392811 GCTCCACAAATTCTCAGATTTCAGG 60.393 44.000 0.00 0.00 0.00 3.86
569 592 5.012239 TCCACAAATTCTCAGATTTCAGGG 58.988 41.667 0.00 0.00 0.00 4.45
570 593 5.012239 CCACAAATTCTCAGATTTCAGGGA 58.988 41.667 0.00 0.00 0.00 4.20
571 594 5.125097 CCACAAATTCTCAGATTTCAGGGAG 59.875 44.000 0.00 0.00 0.00 4.30
572 595 4.704057 ACAAATTCTCAGATTTCAGGGAGC 59.296 41.667 0.00 0.00 0.00 4.70
573 596 4.858965 AATTCTCAGATTTCAGGGAGCT 57.141 40.909 0.00 0.00 0.00 4.09
574 597 3.623906 TTCTCAGATTTCAGGGAGCTG 57.376 47.619 0.00 0.00 0.00 4.24
575 598 1.836166 TCTCAGATTTCAGGGAGCTGG 59.164 52.381 0.00 0.00 0.00 4.85
576 599 1.836166 CTCAGATTTCAGGGAGCTGGA 59.164 52.381 0.00 0.00 0.00 3.86
577 600 1.836166 TCAGATTTCAGGGAGCTGGAG 59.164 52.381 0.00 0.00 0.00 3.86
578 601 1.134159 CAGATTTCAGGGAGCTGGAGG 60.134 57.143 0.00 0.00 0.00 4.30
579 602 1.207791 GATTTCAGGGAGCTGGAGGA 58.792 55.000 0.00 0.00 0.00 3.71
580 603 0.915364 ATTTCAGGGAGCTGGAGGAC 59.085 55.000 0.00 0.00 0.00 3.85
581 604 0.178891 TTTCAGGGAGCTGGAGGACT 60.179 55.000 0.00 0.00 0.00 3.85
582 605 0.906756 TTCAGGGAGCTGGAGGACTG 60.907 60.000 0.00 0.00 0.00 3.51
583 606 2.686835 AGGGAGCTGGAGGACTGC 60.687 66.667 0.00 0.00 43.63 4.40
584 607 3.791586 GGGAGCTGGAGGACTGCC 61.792 72.222 0.00 0.00 44.29 4.85
585 608 4.154347 GGAGCTGGAGGACTGCCG 62.154 72.222 0.00 0.00 44.29 5.69
586 609 3.071206 GAGCTGGAGGACTGCCGA 61.071 66.667 0.00 0.00 44.29 5.54
587 610 2.604686 AGCTGGAGGACTGCCGAA 60.605 61.111 0.00 0.00 44.29 4.30
588 611 2.435059 GCTGGAGGACTGCCGAAC 60.435 66.667 0.00 0.00 39.96 3.95
589 612 3.059982 CTGGAGGACTGCCGAACA 58.940 61.111 0.00 0.00 39.96 3.18
725 752 3.188786 GGAGCTAGCGCGTTGGTG 61.189 66.667 12.54 0.00 42.32 4.17
733 760 3.554692 CGCGTTGGTGATCTCCGC 61.555 66.667 9.20 7.85 40.87 5.54
735 762 1.741770 GCGTTGGTGATCTCCGCTT 60.742 57.895 9.20 0.00 41.06 4.68
808 870 3.467119 CAACGCGGTTCGGTCTCG 61.467 66.667 12.47 0.00 43.86 4.04
809 871 3.969802 AACGCGGTTCGGTCTCGT 61.970 61.111 12.47 0.00 43.86 4.18
868 930 2.269940 CCTTTTCTCCTCTTCCCTCCA 58.730 52.381 0.00 0.00 0.00 3.86
869 931 2.849318 CCTTTTCTCCTCTTCCCTCCAT 59.151 50.000 0.00 0.00 0.00 3.41
897 959 2.325583 TATAGAAGCAGCCAAACCCG 57.674 50.000 0.00 0.00 0.00 5.28
899 961 2.404566 TAGAAGCAGCCAAACCCGCA 62.405 55.000 0.00 0.00 0.00 5.69
900 962 3.273080 GAAGCAGCCAAACCCGCAG 62.273 63.158 0.00 0.00 0.00 5.18
912 975 3.636231 CCGCAGAACCCCCAGACA 61.636 66.667 0.00 0.00 0.00 3.41
1289 1468 0.960364 TGAGGCTCCGCATTTCCAAC 60.960 55.000 12.86 0.00 0.00 3.77
1292 1471 0.171231 GGCTCCGCATTTCCAACTTC 59.829 55.000 0.00 0.00 0.00 3.01
1296 1475 3.190535 GCTCCGCATTTCCAACTTCTTTA 59.809 43.478 0.00 0.00 0.00 1.85
1325 1505 4.965200 ATCCTATTCCTCCTTACTGTGC 57.035 45.455 0.00 0.00 0.00 4.57
1491 1698 4.101448 CTCGGGCTCCCCAACCTG 62.101 72.222 0.00 0.00 45.83 4.00
1500 1707 2.673523 CCCAACCTGCTCCAGAGG 59.326 66.667 0.00 0.00 32.44 3.69
1508 1715 0.907486 CTGCTCCAGAGGATGTTGGA 59.093 55.000 0.00 0.00 41.06 3.53
1509 1716 1.280133 CTGCTCCAGAGGATGTTGGAA 59.720 52.381 0.00 0.00 42.61 3.53
1519 1726 3.416156 AGGATGTTGGAAGAGCAGTTTC 58.584 45.455 0.00 0.00 0.00 2.78
1779 2201 8.584157 ACATAACAGCTCATATTTTTGGAAACA 58.416 29.630 0.00 0.00 39.83 2.83
1863 2521 8.059798 AGTCATGGATTTGTTCTTCCTAAATG 57.940 34.615 0.00 0.00 32.95 2.32
1932 2731 4.037208 GGAATGTTGTGGATGTGATGGATC 59.963 45.833 0.00 0.00 0.00 3.36
2005 2830 6.016527 CCAACAGATCTTTGATGGTATCCATG 60.017 42.308 15.13 0.00 45.26 3.66
2128 2958 4.848357 ACTACTTTTGGCTATGTCATGCT 58.152 39.130 0.00 0.00 0.00 3.79
2133 2963 6.000219 ACTTTTGGCTATGTCATGCTATAGG 59.000 40.000 14.16 0.00 0.00 2.57
2142 2972 6.747414 ATGTCATGCTATAGGTACAAGGAA 57.253 37.500 1.04 0.00 0.00 3.36
2172 3002 3.698040 AGCTTCACTTCCTAATGGCATTG 59.302 43.478 22.57 11.96 0.00 2.82
2264 3436 9.802039 ATCCTTACTGTCAAACCAAGTATTTTA 57.198 29.630 0.00 0.00 0.00 1.52
2410 3592 5.084818 TGTCGATGTTGACAGACCAATAT 57.915 39.130 0.00 0.00 43.62 1.28
2427 3609 8.768397 AGACCAATATATACACTTTTCACTGGA 58.232 33.333 0.00 0.00 0.00 3.86
2589 3771 1.941668 GCGGACTTCACCAAAGAGGAG 60.942 57.143 0.00 0.00 41.22 3.69
2887 4119 3.327404 GAACCAGGGAGGGCCGAA 61.327 66.667 0.00 0.00 43.89 4.30
2888 4120 3.330720 AACCAGGGAGGGCCGAAG 61.331 66.667 0.00 0.00 43.89 3.79
2889 4121 3.864983 AACCAGGGAGGGCCGAAGA 62.865 63.158 0.00 0.00 43.89 2.87
2890 4122 3.009115 CCAGGGAGGGCCGAAGAA 61.009 66.667 0.00 0.00 33.83 2.52
2891 4123 2.269241 CAGGGAGGGCCGAAGAAC 59.731 66.667 0.00 0.00 33.83 3.01
2892 4124 2.203938 AGGGAGGGCCGAAGAACA 60.204 61.111 0.00 0.00 33.83 3.18
2916 4196 9.869757 ACATTTTATTGTTTTCCATAGTTAGCC 57.130 29.630 0.00 0.00 0.00 3.93
3036 4502 5.939296 TGTGCAGTGACATTATTTCATCTGA 59.061 36.000 11.94 0.00 30.22 3.27
3038 4504 7.040548 TGTGCAGTGACATTATTTCATCTGAAA 60.041 33.333 7.74 7.74 46.60 2.69
3039 4505 7.272084 GTGCAGTGACATTATTTCATCTGAAAC 59.728 37.037 7.48 7.57 45.55 2.78
3040 4506 7.040548 TGCAGTGACATTATTTCATCTGAAACA 60.041 33.333 7.48 0.00 45.55 2.83
3057 4523 5.022122 TGAAACATATTTGGGATTGGCAGA 58.978 37.500 0.00 0.00 0.00 4.26
3060 4526 4.549668 ACATATTTGGGATTGGCAGACAT 58.450 39.130 0.00 0.00 0.00 3.06
3061 4527 4.964262 ACATATTTGGGATTGGCAGACATT 59.036 37.500 0.00 0.00 0.00 2.71
3160 4630 5.049474 GCTTTTAAAAGGGAATGGCTTGTTG 60.049 40.000 25.40 0.16 36.53 3.33
3220 4787 9.231297 GCATATAATATCCCAAATACACACTGT 57.769 33.333 0.00 0.00 0.00 3.55
3934 7229 4.142182 GGCAATTAGCTTACTGGCATGAAA 60.142 41.667 2.67 0.00 44.79 2.69
4331 8360 2.672651 CCCTGTCCGTGCAATGCA 60.673 61.111 2.72 2.72 35.60 3.96
4390 8422 9.725019 CTAGAACAACATGGCAATATCCTAATA 57.275 33.333 0.00 0.00 0.00 0.98
4421 8453 5.407995 CCGCACAACATGGTGATTTTTAATT 59.592 36.000 19.90 0.00 41.32 1.40
4422 8454 6.587990 CCGCACAACATGGTGATTTTTAATTA 59.412 34.615 19.90 0.00 41.32 1.40
4447 8482 0.729116 ATCGCTGATCTTTGTTGCGG 59.271 50.000 0.00 0.00 45.59 5.69
4670 8715 3.871006 TCCATACTGTAATTGCTGCTTCG 59.129 43.478 0.00 0.00 0.00 3.79
5004 9157 2.101582 ACTTCAGCTTCTCGACAACTGT 59.898 45.455 0.00 0.00 0.00 3.55
5303 9538 8.568732 TTCACAAACGATTTTATGGAAGTTTC 57.431 30.769 0.00 0.00 30.56 2.78
5472 9709 3.372206 CCTCTGTTGACAATTAAGCTCCG 59.628 47.826 0.00 0.00 0.00 4.63
5491 9728 3.388676 TCCGACAAAAGTCCTTTCCAGTA 59.611 43.478 0.00 0.00 31.45 2.74
5580 9899 5.848406 AGCTAGACCTTGTATGCATAACTC 58.152 41.667 8.28 0.00 0.00 3.01
5581 9900 4.681942 GCTAGACCTTGTATGCATAACTCG 59.318 45.833 8.28 0.00 0.00 4.18
5605 9925 6.472163 CGTGAGTACCAAATTATTGAAATGCC 59.528 38.462 0.00 0.00 38.94 4.40
5668 9991 2.299582 CCTTTTGTTCCATGCCATGACA 59.700 45.455 6.18 0.24 0.00 3.58
5778 10101 1.006922 GAAGCAACTGCAACTGGCC 60.007 57.895 4.22 0.00 45.16 5.36
5808 10131 9.737427 CTCTACCATAGTAAAGTATTCAGTGTG 57.263 37.037 0.00 0.00 0.00 3.82
5890 10219 6.317642 TGTTGCTCCGTATATGCTAAATTTGT 59.682 34.615 0.00 0.00 0.00 2.83
5932 10261 9.878599 ACATTTGTCTTGTATTCTTAAAGAACG 57.121 29.630 0.00 0.00 37.00 3.95
5967 10296 3.086733 GAGTATCTGGCTTGCACCC 57.913 57.895 0.00 0.00 0.00 4.61
5968 10297 0.464554 GAGTATCTGGCTTGCACCCC 60.465 60.000 0.00 0.00 0.00 4.95
5969 10298 1.819632 GTATCTGGCTTGCACCCCG 60.820 63.158 0.00 0.00 0.00 5.73
5970 10299 3.697439 TATCTGGCTTGCACCCCGC 62.697 63.158 0.00 0.00 42.89 6.13
6052 10382 6.584185 AACATTGTGTAATCCTGTTAACCC 57.416 37.500 2.48 0.00 0.00 4.11
6186 10516 7.979444 ACTCATAGCAGAAGAGATACTAGAC 57.021 40.000 0.00 0.00 33.69 2.59
6202 10532 9.023962 AGATACTAGACTAGCTACATACGTACT 57.976 37.037 9.52 0.00 0.00 2.73
6203 10533 8.984891 ATACTAGACTAGCTACATACGTACTG 57.015 38.462 9.52 0.31 0.00 2.74
6204 10534 6.815089 ACTAGACTAGCTACATACGTACTGT 58.185 40.000 9.52 6.65 0.00 3.55
6205 10535 7.271511 ACTAGACTAGCTACATACGTACTGTT 58.728 38.462 9.52 2.64 0.00 3.16
6206 10536 8.417106 ACTAGACTAGCTACATACGTACTGTTA 58.583 37.037 9.52 3.43 0.00 2.41
6207 10537 7.712264 AGACTAGCTACATACGTACTGTTAG 57.288 40.000 13.38 11.74 0.00 2.34
6208 10538 7.495901 AGACTAGCTACATACGTACTGTTAGA 58.504 38.462 13.38 0.00 0.00 2.10
6209 10539 7.437862 AGACTAGCTACATACGTACTGTTAGAC 59.562 40.741 13.38 10.34 0.00 2.59
6210 10540 7.044181 ACTAGCTACATACGTACTGTTAGACA 58.956 38.462 13.38 0.00 0.00 3.41
6211 10541 6.939132 AGCTACATACGTACTGTTAGACAT 57.061 37.500 13.38 0.00 0.00 3.06
6212 10542 6.726230 AGCTACATACGTACTGTTAGACATG 58.274 40.000 13.38 0.00 0.00 3.21
6213 10543 5.398711 GCTACATACGTACTGTTAGACATGC 59.601 44.000 13.38 0.00 0.00 4.06
6214 10544 5.319140 ACATACGTACTGTTAGACATGCA 57.681 39.130 0.00 0.00 0.00 3.96
6215 10545 5.716094 ACATACGTACTGTTAGACATGCAA 58.284 37.500 0.00 0.00 0.00 4.08
6216 10546 6.338146 ACATACGTACTGTTAGACATGCAAT 58.662 36.000 0.00 0.00 0.00 3.56
6217 10547 7.485810 ACATACGTACTGTTAGACATGCAATA 58.514 34.615 0.00 0.00 0.00 1.90
6218 10548 7.434307 ACATACGTACTGTTAGACATGCAATAC 59.566 37.037 0.00 0.00 0.00 1.89
6219 10549 5.962433 ACGTACTGTTAGACATGCAATACT 58.038 37.500 0.00 0.00 0.00 2.12
6220 10550 5.805486 ACGTACTGTTAGACATGCAATACTG 59.195 40.000 0.00 0.00 0.00 2.74
6221 10551 6.033966 CGTACTGTTAGACATGCAATACTGA 58.966 40.000 0.00 0.00 0.00 3.41
6222 10552 6.020599 CGTACTGTTAGACATGCAATACTGAC 60.021 42.308 0.00 0.00 0.00 3.51
6223 10553 5.793817 ACTGTTAGACATGCAATACTGACA 58.206 37.500 11.88 11.88 31.64 3.58
6224 10554 6.409704 ACTGTTAGACATGCAATACTGACAT 58.590 36.000 12.50 4.65 31.92 3.06
6225 10555 6.314648 ACTGTTAGACATGCAATACTGACATG 59.685 38.462 12.50 6.93 40.22 3.21
6226 10556 6.172630 TGTTAGACATGCAATACTGACATGT 58.827 36.000 12.01 12.01 45.12 3.21
6229 10559 4.952262 ACATGCAATACTGACATGTCAC 57.048 40.909 24.56 13.94 41.96 3.67
6230 10560 3.371898 ACATGCAATACTGACATGTCACG 59.628 43.478 24.56 20.70 41.96 4.35
6231 10561 1.731709 TGCAATACTGACATGTCACGC 59.268 47.619 24.56 19.64 35.46 5.34
6232 10562 1.731709 GCAATACTGACATGTCACGCA 59.268 47.619 24.56 12.43 35.46 5.24
6233 10563 2.352651 GCAATACTGACATGTCACGCAT 59.647 45.455 24.56 14.07 38.60 4.73
6244 10574 2.276201 TGTCACGCATGTATAAGTGGC 58.724 47.619 0.00 0.19 39.41 5.01
6245 10575 2.276201 GTCACGCATGTATAAGTGGCA 58.724 47.619 0.00 0.00 38.87 4.92
6246 10576 2.872245 GTCACGCATGTATAAGTGGCAT 59.128 45.455 0.00 0.00 38.87 4.40
6247 10577 2.871633 TCACGCATGTATAAGTGGCATG 59.128 45.455 0.00 0.00 41.89 4.06
6248 10578 2.613595 CACGCATGTATAAGTGGCATGT 59.386 45.455 0.00 0.00 41.27 3.21
6249 10579 2.872245 ACGCATGTATAAGTGGCATGTC 59.128 45.455 0.00 0.00 41.27 3.06
6250 10580 2.871633 CGCATGTATAAGTGGCATGTCA 59.128 45.455 0.00 0.00 41.27 3.58
6251 10581 3.303329 CGCATGTATAAGTGGCATGTCAC 60.303 47.826 22.91 22.91 41.27 3.67
6252 10582 3.303329 GCATGTATAAGTGGCATGTCACG 60.303 47.826 23.89 8.88 41.27 4.35
6253 10583 3.603158 TGTATAAGTGGCATGTCACGT 57.397 42.857 23.89 22.98 42.10 4.49
6254 10584 4.722361 TGTATAAGTGGCATGTCACGTA 57.278 40.909 24.77 24.77 42.10 3.57
6255 10585 5.270893 TGTATAAGTGGCATGTCACGTAT 57.729 39.130 31.75 31.75 42.13 3.06
6256 10586 5.666462 TGTATAAGTGGCATGTCACGTATT 58.334 37.500 33.38 21.74 40.71 1.89
6257 10587 5.751509 TGTATAAGTGGCATGTCACGTATTC 59.248 40.000 33.38 29.02 40.71 1.75
6258 10588 3.334583 AAGTGGCATGTCACGTATTCT 57.665 42.857 23.89 3.16 42.10 2.40
6259 10589 2.893637 AGTGGCATGTCACGTATTCTC 58.106 47.619 23.89 0.00 42.10 2.87
6260 10590 2.497675 AGTGGCATGTCACGTATTCTCT 59.502 45.455 23.89 1.59 42.10 3.10
6261 10591 3.055819 AGTGGCATGTCACGTATTCTCTT 60.056 43.478 23.89 0.82 42.10 2.85
6262 10592 3.684788 GTGGCATGTCACGTATTCTCTTT 59.315 43.478 15.79 0.00 0.00 2.52
6263 10593 4.154195 GTGGCATGTCACGTATTCTCTTTT 59.846 41.667 15.79 0.00 0.00 2.27
6264 10594 5.350365 GTGGCATGTCACGTATTCTCTTTTA 59.650 40.000 15.79 0.00 0.00 1.52
6265 10595 6.037172 GTGGCATGTCACGTATTCTCTTTTAT 59.963 38.462 15.79 0.00 0.00 1.40
6266 10596 7.223971 GTGGCATGTCACGTATTCTCTTTTATA 59.776 37.037 15.79 0.00 0.00 0.98
6267 10597 7.931407 TGGCATGTCACGTATTCTCTTTTATAT 59.069 33.333 0.00 0.00 0.00 0.86
6268 10598 9.419297 GGCATGTCACGTATTCTCTTTTATATA 57.581 33.333 0.00 0.00 0.00 0.86
6294 10624 8.568617 AACATTAGGAGATATTGTTAGGAGGT 57.431 34.615 0.00 0.00 36.61 3.85
6295 10625 8.568617 ACATTAGGAGATATTGTTAGGAGGTT 57.431 34.615 0.00 0.00 0.00 3.50
6296 10626 9.670442 ACATTAGGAGATATTGTTAGGAGGTTA 57.330 33.333 0.00 0.00 0.00 2.85
6299 10629 9.589461 TTAGGAGATATTGTTAGGAGGTTAGAG 57.411 37.037 0.00 0.00 0.00 2.43
6300 10630 7.827787 AGGAGATATTGTTAGGAGGTTAGAGA 58.172 38.462 0.00 0.00 0.00 3.10
6301 10631 8.461033 AGGAGATATTGTTAGGAGGTTAGAGAT 58.539 37.037 0.00 0.00 0.00 2.75
6302 10632 9.756571 GGAGATATTGTTAGGAGGTTAGAGATA 57.243 37.037 0.00 0.00 0.00 1.98
6343 10673 7.849322 ATCTCTTTATCTCTCTAAACCTCCC 57.151 40.000 0.00 0.00 0.00 4.30
6344 10674 6.987557 TCTCTTTATCTCTCTAAACCTCCCT 58.012 40.000 0.00 0.00 0.00 4.20
6345 10675 6.836527 TCTCTTTATCTCTCTAAACCTCCCTG 59.163 42.308 0.00 0.00 0.00 4.45
6346 10676 6.503944 TCTTTATCTCTCTAAACCTCCCTGT 58.496 40.000 0.00 0.00 0.00 4.00
6347 10677 7.649715 TCTTTATCTCTCTAAACCTCCCTGTA 58.350 38.462 0.00 0.00 0.00 2.74
6348 10678 8.120538 TCTTTATCTCTCTAAACCTCCCTGTAA 58.879 37.037 0.00 0.00 0.00 2.41
6349 10679 8.855804 TTTATCTCTCTAAACCTCCCTGTAAT 57.144 34.615 0.00 0.00 0.00 1.89
6350 10680 6.987403 ATCTCTCTAAACCTCCCTGTAATC 57.013 41.667 0.00 0.00 0.00 1.75
6351 10681 6.093617 TCTCTCTAAACCTCCCTGTAATCT 57.906 41.667 0.00 0.00 0.00 2.40
6352 10682 6.503944 TCTCTCTAAACCTCCCTGTAATCTT 58.496 40.000 0.00 0.00 0.00 2.40
6353 10683 6.608002 TCTCTCTAAACCTCCCTGTAATCTTC 59.392 42.308 0.00 0.00 0.00 2.87
6354 10684 6.503944 TCTCTAAACCTCCCTGTAATCTTCT 58.496 40.000 0.00 0.00 0.00 2.85
6355 10685 6.608002 TCTCTAAACCTCCCTGTAATCTTCTC 59.392 42.308 0.00 0.00 0.00 2.87
6356 10686 4.846168 AAACCTCCCTGTAATCTTCTCC 57.154 45.455 0.00 0.00 0.00 3.71
6357 10687 3.786213 ACCTCCCTGTAATCTTCTCCT 57.214 47.619 0.00 0.00 0.00 3.69
6358 10688 4.081695 ACCTCCCTGTAATCTTCTCCTT 57.918 45.455 0.00 0.00 0.00 3.36
6359 10689 4.439860 ACCTCCCTGTAATCTTCTCCTTT 58.560 43.478 0.00 0.00 0.00 3.11
6360 10690 4.471747 ACCTCCCTGTAATCTTCTCCTTTC 59.528 45.833 0.00 0.00 0.00 2.62
6361 10691 4.442192 CCTCCCTGTAATCTTCTCCTTTCG 60.442 50.000 0.00 0.00 0.00 3.46
6362 10692 3.451178 TCCCTGTAATCTTCTCCTTTCGG 59.549 47.826 0.00 0.00 0.00 4.30
6363 10693 3.197983 CCCTGTAATCTTCTCCTTTCGGT 59.802 47.826 0.00 0.00 0.00 4.69
6364 10694 4.323562 CCCTGTAATCTTCTCCTTTCGGTT 60.324 45.833 0.00 0.00 0.00 4.44
6365 10695 5.105064 CCCTGTAATCTTCTCCTTTCGGTTA 60.105 44.000 0.00 0.00 0.00 2.85
6366 10696 6.043411 CCTGTAATCTTCTCCTTTCGGTTAG 58.957 44.000 0.00 0.00 0.00 2.34
6367 10697 5.416947 TGTAATCTTCTCCTTTCGGTTAGC 58.583 41.667 0.00 0.00 0.00 3.09
6368 10698 3.545366 ATCTTCTCCTTTCGGTTAGCC 57.455 47.619 0.00 0.00 0.00 3.93
6369 10699 1.553704 TCTTCTCCTTTCGGTTAGCCC 59.446 52.381 0.00 0.00 0.00 5.19
6370 10700 1.555533 CTTCTCCTTTCGGTTAGCCCT 59.444 52.381 0.00 0.00 0.00 5.19
6371 10701 1.652947 TCTCCTTTCGGTTAGCCCTT 58.347 50.000 0.00 0.00 0.00 3.95
6372 10702 1.982958 TCTCCTTTCGGTTAGCCCTTT 59.017 47.619 0.00 0.00 0.00 3.11
6373 10703 2.084546 CTCCTTTCGGTTAGCCCTTTG 58.915 52.381 0.00 0.00 0.00 2.77
6374 10704 1.422402 TCCTTTCGGTTAGCCCTTTGT 59.578 47.619 0.00 0.00 0.00 2.83
6375 10705 1.539827 CCTTTCGGTTAGCCCTTTGTG 59.460 52.381 0.00 0.00 0.00 3.33
6376 10706 0.955905 TTTCGGTTAGCCCTTTGTGC 59.044 50.000 0.00 0.00 0.00 4.57
6377 10707 0.109723 TTCGGTTAGCCCTTTGTGCT 59.890 50.000 0.00 0.00 42.81 4.40
6378 10708 0.605319 TCGGTTAGCCCTTTGTGCTG 60.605 55.000 0.00 0.00 39.91 4.41
6379 10709 1.586541 GGTTAGCCCTTTGTGCTGC 59.413 57.895 0.00 0.00 39.91 5.25
6380 10710 1.586541 GTTAGCCCTTTGTGCTGCC 59.413 57.895 0.00 0.00 39.91 4.85
6381 10711 1.971167 TTAGCCCTTTGTGCTGCCG 60.971 57.895 0.00 0.00 39.91 5.69
6382 10712 3.918253 TAGCCCTTTGTGCTGCCGG 62.918 63.158 0.00 0.00 39.91 6.13
6384 10714 2.361610 CCCTTTGTGCTGCCGGAT 60.362 61.111 5.05 0.00 0.00 4.18
6385 10715 2.409870 CCCTTTGTGCTGCCGGATC 61.410 63.158 5.05 0.00 0.00 3.36
6386 10716 1.675310 CCTTTGTGCTGCCGGATCA 60.675 57.895 5.05 0.00 0.00 2.92
6387 10717 1.033746 CCTTTGTGCTGCCGGATCAT 61.034 55.000 5.05 0.00 0.00 2.45
6388 10718 0.099968 CTTTGTGCTGCCGGATCATG 59.900 55.000 5.05 0.00 0.00 3.07
6389 10719 0.608856 TTTGTGCTGCCGGATCATGT 60.609 50.000 5.05 0.00 0.00 3.21
6390 10720 0.251634 TTGTGCTGCCGGATCATGTA 59.748 50.000 5.05 0.00 0.00 2.29
6391 10721 0.469494 TGTGCTGCCGGATCATGTAT 59.531 50.000 5.05 0.00 0.00 2.29
6392 10722 1.151668 GTGCTGCCGGATCATGTATC 58.848 55.000 5.05 0.00 0.00 2.24
6393 10723 0.758123 TGCTGCCGGATCATGTATCA 59.242 50.000 5.05 0.00 36.20 2.15
6394 10724 1.140652 TGCTGCCGGATCATGTATCAA 59.859 47.619 5.05 0.00 36.20 2.57
6395 10725 1.532868 GCTGCCGGATCATGTATCAAC 59.467 52.381 5.05 0.00 36.20 3.18
6399 10729 2.037772 GCCGGATCATGTATCAACCTCT 59.962 50.000 5.05 0.00 36.20 3.69
6428 10758 5.660864 TCAATATATATCATGCGGGTCTCCA 59.339 40.000 0.00 0.00 0.00 3.86
6450 10780 2.159421 TGTACGGAGATTGAGACGCTTC 60.159 50.000 0.00 0.00 0.00 3.86
6502 10832 3.726607 CTCTTCCGATTGCATCTAGCTT 58.273 45.455 0.00 0.00 45.94 3.74
6525 10855 1.104577 CCTCCTACCTCTCGACAGCC 61.105 65.000 0.00 0.00 0.00 4.85
6532 10862 3.781770 CTCTCGACAGCCGCCCATC 62.782 68.421 0.00 0.00 38.37 3.51
6545 10875 1.766059 CCCATCTCCATCGTCCCCA 60.766 63.158 0.00 0.00 0.00 4.96
6547 10877 0.179045 CCATCTCCATCGTCCCCAAC 60.179 60.000 0.00 0.00 0.00 3.77
6549 10879 0.326618 ATCTCCATCGTCCCCAACCT 60.327 55.000 0.00 0.00 0.00 3.50
6550 10880 0.337082 TCTCCATCGTCCCCAACCTA 59.663 55.000 0.00 0.00 0.00 3.08
6551 10881 1.200519 CTCCATCGTCCCCAACCTAA 58.799 55.000 0.00 0.00 0.00 2.69
6552 10882 1.139058 CTCCATCGTCCCCAACCTAAG 59.861 57.143 0.00 0.00 0.00 2.18
6554 10884 0.541863 CATCGTCCCCAACCTAAGCT 59.458 55.000 0.00 0.00 0.00 3.74
6557 10887 1.002773 TCGTCCCCAACCTAAGCTTTC 59.997 52.381 3.20 0.00 0.00 2.62
6559 10889 0.702316 TCCCCAACCTAAGCTTTCCC 59.298 55.000 3.20 0.00 0.00 3.97
6560 10890 0.704664 CCCCAACCTAAGCTTTCCCT 59.295 55.000 3.20 0.00 0.00 4.20
6561 10891 1.077169 CCCCAACCTAAGCTTTCCCTT 59.923 52.381 3.20 0.00 0.00 3.95
6562 10892 2.447443 CCCAACCTAAGCTTTCCCTTC 58.553 52.381 3.20 0.00 0.00 3.46
6568 10898 0.035439 TAAGCTTTCCCTTCAGCCCG 60.035 55.000 3.20 0.00 36.62 6.13
6588 10919 1.697394 CACCCATCCCCTCCCATCA 60.697 63.158 0.00 0.00 0.00 3.07
6601 10932 2.507058 CTCCCATCATGTCTTCCTCCAA 59.493 50.000 0.00 0.00 0.00 3.53
6605 10936 2.859165 TCATGTCTTCCTCCAACACC 57.141 50.000 0.00 0.00 0.00 4.16
6608 10939 1.671379 GTCTTCCTCCAACACCGCC 60.671 63.158 0.00 0.00 0.00 6.13
6609 10940 2.144078 TCTTCCTCCAACACCGCCA 61.144 57.895 0.00 0.00 0.00 5.69
6611 10942 1.002624 TTCCTCCAACACCGCCATC 60.003 57.895 0.00 0.00 0.00 3.51
6641 10972 4.248859 CCCTCAACTACAACACATCTGAG 58.751 47.826 0.00 0.00 0.00 3.35
6644 10975 2.744202 CAACTACAACACATCTGAGCCC 59.256 50.000 0.00 0.00 0.00 5.19
6645 10976 1.066858 ACTACAACACATCTGAGCCCG 60.067 52.381 0.00 0.00 0.00 6.13
6646 10977 0.249120 TACAACACATCTGAGCCCGG 59.751 55.000 0.00 0.00 0.00 5.73
6647 10978 1.746615 CAACACATCTGAGCCCGGG 60.747 63.158 19.09 19.09 0.00 5.73
6648 10979 2.224159 AACACATCTGAGCCCGGGT 61.224 57.895 24.63 9.10 0.00 5.28
6650 10981 3.461773 ACATCTGAGCCCGGGTCG 61.462 66.667 24.63 13.83 32.15 4.79
6651 10982 3.461773 CATCTGAGCCCGGGTCGT 61.462 66.667 24.63 7.17 32.15 4.34
6664 10995 1.078637 GGTCGTCCCCAACCTAAGC 60.079 63.158 0.00 0.00 32.54 3.09
6666 10997 0.323957 GTCGTCCCCAACCTAAGCTT 59.676 55.000 3.48 3.48 0.00 3.74
6669 11000 1.835494 GTCCCCAACCTAAGCTTTCC 58.165 55.000 3.20 0.00 0.00 3.13
6670 11001 0.702316 TCCCCAACCTAAGCTTTCCC 59.298 55.000 3.20 0.00 0.00 3.97
6671 11002 0.704664 CCCCAACCTAAGCTTTCCCT 59.295 55.000 3.20 0.00 0.00 4.20
6672 11003 1.077169 CCCCAACCTAAGCTTTCCCTT 59.923 52.381 3.20 0.00 0.00 3.95
6673 11004 2.447443 CCCAACCTAAGCTTTCCCTTC 58.553 52.381 3.20 0.00 0.00 3.46
6677 11008 1.004862 ACCTAAGCTTTCCCTTCAGCC 59.995 52.381 3.20 0.00 36.62 4.85
6679 11010 0.035439 TAAGCTTTCCCTTCAGCCCG 60.035 55.000 3.20 0.00 36.62 6.13
6680 11011 3.443925 GCTTTCCCTTCAGCCCGC 61.444 66.667 0.00 0.00 0.00 6.13
6681 11012 2.751837 CTTTCCCTTCAGCCCGCC 60.752 66.667 0.00 0.00 0.00 6.13
6682 11013 3.567579 CTTTCCCTTCAGCCCGCCA 62.568 63.158 0.00 0.00 0.00 5.69
6683 11014 3.860930 TTTCCCTTCAGCCCGCCAC 62.861 63.158 0.00 0.00 0.00 5.01
6688 11019 3.944250 CTTCAGCCCGCCACCCATT 62.944 63.158 0.00 0.00 0.00 3.16
6695 12884 4.506255 CGCCACCCATTCCCCTCC 62.506 72.222 0.00 0.00 0.00 4.30
6701 12890 0.329831 ACCCATTCCCCTCCCATCAT 60.330 55.000 0.00 0.00 0.00 2.45
6706 12895 1.985622 TTCCCCTCCCATCATGTCTT 58.014 50.000 0.00 0.00 0.00 3.01
6707 12896 1.511613 TCCCCTCCCATCATGTCTTC 58.488 55.000 0.00 0.00 0.00 2.87
6708 12897 0.475906 CCCCTCCCATCATGTCTTCC 59.524 60.000 0.00 0.00 0.00 3.46
6712 12901 2.121948 CTCCCATCATGTCTTCCTCCA 58.878 52.381 0.00 0.00 0.00 3.86
6716 12905 3.012518 CCATCATGTCTTCCTCCAACAC 58.987 50.000 0.00 0.00 0.00 3.32
6717 12906 2.859165 TCATGTCTTCCTCCAACACC 57.141 50.000 0.00 0.00 0.00 4.16
6718 12907 1.001974 TCATGTCTTCCTCCAACACCG 59.998 52.381 0.00 0.00 0.00 4.94
6719 12908 0.321653 ATGTCTTCCTCCAACACCGC 60.322 55.000 0.00 0.00 0.00 5.68
6722 12911 1.002134 CTTCCTCCAACACCGCCAT 60.002 57.895 0.00 0.00 0.00 4.40
6724 12913 1.488705 TTCCTCCAACACCGCCATCT 61.489 55.000 0.00 0.00 0.00 2.90
6725 12914 1.450312 CCTCCAACACCGCCATCTC 60.450 63.158 0.00 0.00 0.00 2.75
6727 12916 2.438434 CCAACACCGCCATCTCCC 60.438 66.667 0.00 0.00 0.00 4.30
6728 12917 2.438434 CAACACCGCCATCTCCCC 60.438 66.667 0.00 0.00 0.00 4.81
6729 12918 3.728373 AACACCGCCATCTCCCCC 61.728 66.667 0.00 0.00 0.00 5.40
6731 12920 4.489771 CACCGCCATCTCCCCCAC 62.490 72.222 0.00 0.00 0.00 4.61
6735 12924 3.493303 GCCATCTCCCCCACCCTC 61.493 72.222 0.00 0.00 0.00 4.30
6736 12925 2.042762 CCATCTCCCCCACCCTCA 59.957 66.667 0.00 0.00 0.00 3.86
6737 12926 1.619363 CCATCTCCCCCACCCTCAA 60.619 63.158 0.00 0.00 0.00 3.02
6738 12927 1.609783 CATCTCCCCCACCCTCAAC 59.390 63.158 0.00 0.00 0.00 3.18
6739 12928 0.916358 CATCTCCCCCACCCTCAACT 60.916 60.000 0.00 0.00 0.00 3.16
6740 12929 0.722676 ATCTCCCCCACCCTCAACTA 59.277 55.000 0.00 0.00 0.00 2.24
6741 12930 0.252558 TCTCCCCCACCCTCAACTAC 60.253 60.000 0.00 0.00 0.00 2.73
6743 12932 0.104356 TCCCCCACCCTCAACTACAA 60.104 55.000 0.00 0.00 0.00 2.41
6745 12934 0.768622 CCCCACCCTCAACTACAACA 59.231 55.000 0.00 0.00 0.00 3.33
6748 12937 2.224769 CCCACCCTCAACTACAACACAT 60.225 50.000 0.00 0.00 0.00 3.21
6749 12938 3.074412 CCACCCTCAACTACAACACATC 58.926 50.000 0.00 0.00 0.00 3.06
6750 12939 3.244561 CCACCCTCAACTACAACACATCT 60.245 47.826 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.695924 ATCCGGACACCACAATCCAA 59.304 50.000 6.12 0.00 34.35 3.53
37 38 9.778993 CGATGTCTCAATTGAATGATAAAAGTT 57.221 29.630 9.88 0.00 0.00 2.66
44 45 4.509230 CCGACGATGTCTCAATTGAATGAT 59.491 41.667 9.88 1.24 0.00 2.45
49 50 2.416836 GGACCGACGATGTCTCAATTGA 60.417 50.000 8.12 8.12 33.22 2.57
56 57 1.673337 TCGTGGACCGACGATGTCT 60.673 57.895 13.06 0.00 43.26 3.41
107 108 0.963962 TAACTCCCTCGCGTTTGTCT 59.036 50.000 5.77 0.00 0.00 3.41
127 128 2.035961 AGTGGATATCCGAACACCGATG 59.964 50.000 17.04 0.00 41.76 3.84
129 130 1.771565 AGTGGATATCCGAACACCGA 58.228 50.000 17.04 0.00 41.76 4.69
136 137 5.351948 TTGTTGATCAAGTGGATATCCGA 57.648 39.130 17.04 8.29 36.00 4.55
152 153 2.223688 CCACGTGATGGCTTTTTGTTGA 60.224 45.455 19.30 0.00 43.24 3.18
179 180 5.295950 CATGTGCGGAGAGATAAAAGAGAT 58.704 41.667 0.00 0.00 0.00 2.75
262 263 0.473326 GGAGAGAGCCATCCAATGCT 59.527 55.000 0.00 0.00 41.42 3.79
263 264 0.536915 GGGAGAGAGCCATCCAATGC 60.537 60.000 0.00 0.00 37.33 3.56
264 265 0.250209 CGGGAGAGAGCCATCCAATG 60.250 60.000 0.00 0.00 37.33 2.82
265 266 0.692419 ACGGGAGAGAGCCATCCAAT 60.692 55.000 0.00 0.00 37.33 3.16
284 285 0.526739 CGTGGTTCGCGGACATGATA 60.527 55.000 21.18 0.00 33.47 2.15
325 326 2.484264 GGCAAATGACTCCGGTATATGC 59.516 50.000 0.00 4.61 0.00 3.14
367 387 4.569943 GGATGAATGATACATAGTGGCGT 58.430 43.478 0.00 0.00 0.00 5.68
418 438 9.016438 GGGGTTACTTTACATAGAAATTCACAA 57.984 33.333 0.00 0.00 0.00 3.33
425 445 6.014327 AGACACGGGGTTACTTTACATAGAAA 60.014 38.462 0.00 0.00 0.00 2.52
429 449 5.714333 TGTAGACACGGGGTTACTTTACATA 59.286 40.000 0.00 0.00 0.00 2.29
430 450 4.527816 TGTAGACACGGGGTTACTTTACAT 59.472 41.667 0.00 0.00 0.00 2.29
431 451 3.894427 TGTAGACACGGGGTTACTTTACA 59.106 43.478 0.00 0.00 0.00 2.41
432 452 4.519540 TGTAGACACGGGGTTACTTTAC 57.480 45.455 0.00 0.00 0.00 2.01
433 453 5.511202 CCTTTGTAGACACGGGGTTACTTTA 60.511 44.000 0.00 0.00 0.00 1.85
444 467 0.034896 ACAGGCCCTTTGTAGACACG 59.965 55.000 0.00 0.00 0.00 4.49
445 468 2.271944 AACAGGCCCTTTGTAGACAC 57.728 50.000 0.00 0.00 0.00 3.67
452 475 0.961753 GTCTCCAAACAGGCCCTTTG 59.038 55.000 14.20 14.20 37.29 2.77
453 476 0.853530 AGTCTCCAAACAGGCCCTTT 59.146 50.000 0.00 0.00 37.29 3.11
454 477 0.402121 GAGTCTCCAAACAGGCCCTT 59.598 55.000 0.00 0.00 37.29 3.95
455 478 0.474660 AGAGTCTCCAAACAGGCCCT 60.475 55.000 0.00 0.00 37.29 5.19
456 479 0.035915 GAGAGTCTCCAAACAGGCCC 60.036 60.000 9.15 0.00 37.29 5.80
457 480 3.542046 GAGAGTCTCCAAACAGGCC 57.458 57.895 9.15 0.00 37.29 5.19
467 490 2.835895 GGGGAGCGGGAGAGTCTC 60.836 72.222 12.01 12.01 0.00 3.36
468 491 3.239627 TTGGGGAGCGGGAGAGTCT 62.240 63.158 0.00 0.00 0.00 3.24
469 492 2.683933 TTGGGGAGCGGGAGAGTC 60.684 66.667 0.00 0.00 0.00 3.36
470 493 2.685380 CTTGGGGAGCGGGAGAGT 60.685 66.667 0.00 0.00 0.00 3.24
471 494 2.685380 ACTTGGGGAGCGGGAGAG 60.685 66.667 0.00 0.00 0.00 3.20
472 495 2.683933 GACTTGGGGAGCGGGAGA 60.684 66.667 0.00 0.00 0.00 3.71
473 496 3.787001 GGACTTGGGGAGCGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
477 500 4.821589 GAGCGGACTTGGGGAGCG 62.822 72.222 0.00 0.00 0.00 5.03
478 501 4.475135 GGAGCGGACTTGGGGAGC 62.475 72.222 0.00 0.00 0.00 4.70
479 502 3.003173 TGGAGCGGACTTGGGGAG 61.003 66.667 0.00 0.00 0.00 4.30
480 503 3.003173 CTGGAGCGGACTTGGGGA 61.003 66.667 0.00 0.00 0.00 4.81
481 504 4.101448 CCTGGAGCGGACTTGGGG 62.101 72.222 0.00 0.00 0.00 4.96
482 505 3.003173 TCCTGGAGCGGACTTGGG 61.003 66.667 0.00 0.00 0.00 4.12
483 506 1.831652 AACTCCTGGAGCGGACTTGG 61.832 60.000 23.43 0.00 32.04 3.61
484 507 0.671781 CAACTCCTGGAGCGGACTTG 60.672 60.000 23.43 15.28 32.04 3.16
485 508 1.674057 CAACTCCTGGAGCGGACTT 59.326 57.895 23.43 7.14 32.04 3.01
486 509 3.382111 CAACTCCTGGAGCGGACT 58.618 61.111 23.43 0.33 32.04 3.85
495 518 0.976641 TACAGCTCCACCAACTCCTG 59.023 55.000 0.00 0.00 0.00 3.86
496 519 1.270907 CTACAGCTCCACCAACTCCT 58.729 55.000 0.00 0.00 0.00 3.69
497 520 0.391793 GCTACAGCTCCACCAACTCC 60.392 60.000 0.00 0.00 38.21 3.85
498 521 3.145228 GCTACAGCTCCACCAACTC 57.855 57.895 0.00 0.00 38.21 3.01
509 532 4.010349 ACTCCACCATTTTTAGCTACAGC 58.990 43.478 0.00 0.00 42.49 4.40
510 533 4.396166 CCACTCCACCATTTTTAGCTACAG 59.604 45.833 0.00 0.00 0.00 2.74
511 534 4.331968 CCACTCCACCATTTTTAGCTACA 58.668 43.478 0.00 0.00 0.00 2.74
512 535 3.694566 CCCACTCCACCATTTTTAGCTAC 59.305 47.826 0.00 0.00 0.00 3.58
513 536 3.308832 CCCCACTCCACCATTTTTAGCTA 60.309 47.826 0.00 0.00 0.00 3.32
514 537 2.557452 CCCCACTCCACCATTTTTAGCT 60.557 50.000 0.00 0.00 0.00 3.32
515 538 1.824852 CCCCACTCCACCATTTTTAGC 59.175 52.381 0.00 0.00 0.00 3.09
516 539 3.449746 TCCCCACTCCACCATTTTTAG 57.550 47.619 0.00 0.00 0.00 1.85
517 540 3.905493 TTCCCCACTCCACCATTTTTA 57.095 42.857 0.00 0.00 0.00 1.52
518 541 2.785357 TTCCCCACTCCACCATTTTT 57.215 45.000 0.00 0.00 0.00 1.94
519 542 2.785357 TTTCCCCACTCCACCATTTT 57.215 45.000 0.00 0.00 0.00 1.82
520 543 2.608623 CTTTTCCCCACTCCACCATTT 58.391 47.619 0.00 0.00 0.00 2.32
521 544 1.203174 CCTTTTCCCCACTCCACCATT 60.203 52.381 0.00 0.00 0.00 3.16
522 545 0.409484 CCTTTTCCCCACTCCACCAT 59.591 55.000 0.00 0.00 0.00 3.55
523 546 1.850549 CCTTTTCCCCACTCCACCA 59.149 57.895 0.00 0.00 0.00 4.17
524 547 1.606601 GCCTTTTCCCCACTCCACC 60.607 63.158 0.00 0.00 0.00 4.61
525 548 0.895559 CTGCCTTTTCCCCACTCCAC 60.896 60.000 0.00 0.00 0.00 4.02
526 549 1.460255 CTGCCTTTTCCCCACTCCA 59.540 57.895 0.00 0.00 0.00 3.86
527 550 1.979155 GCTGCCTTTTCCCCACTCC 60.979 63.158 0.00 0.00 0.00 3.85
528 551 0.962855 GAGCTGCCTTTTCCCCACTC 60.963 60.000 0.00 0.00 0.00 3.51
529 552 1.075659 GAGCTGCCTTTTCCCCACT 59.924 57.895 0.00 0.00 0.00 4.00
530 553 1.979155 GGAGCTGCCTTTTCCCCAC 60.979 63.158 0.00 0.00 0.00 4.61
531 554 2.440599 GGAGCTGCCTTTTCCCCA 59.559 61.111 0.00 0.00 0.00 4.96
532 555 1.979155 GTGGAGCTGCCTTTTCCCC 60.979 63.158 1.53 0.00 37.63 4.81
533 556 0.827507 TTGTGGAGCTGCCTTTTCCC 60.828 55.000 1.53 0.00 37.63 3.97
534 557 1.039856 TTTGTGGAGCTGCCTTTTCC 58.960 50.000 1.53 0.00 37.63 3.13
535 558 3.006217 AGAATTTGTGGAGCTGCCTTTTC 59.994 43.478 1.53 0.00 37.63 2.29
536 559 2.967887 AGAATTTGTGGAGCTGCCTTTT 59.032 40.909 1.53 0.00 37.63 2.27
537 560 2.560105 GAGAATTTGTGGAGCTGCCTTT 59.440 45.455 1.53 0.00 37.63 3.11
538 561 2.165998 GAGAATTTGTGGAGCTGCCTT 58.834 47.619 1.53 0.00 37.63 4.35
539 562 1.074405 TGAGAATTTGTGGAGCTGCCT 59.926 47.619 1.53 0.00 37.63 4.75
540 563 1.471684 CTGAGAATTTGTGGAGCTGCC 59.528 52.381 1.53 0.00 37.10 4.85
541 564 2.430465 TCTGAGAATTTGTGGAGCTGC 58.570 47.619 0.00 0.00 0.00 5.25
542 565 5.182570 TGAAATCTGAGAATTTGTGGAGCTG 59.817 40.000 0.00 0.00 0.00 4.24
543 566 5.319453 TGAAATCTGAGAATTTGTGGAGCT 58.681 37.500 0.00 0.00 0.00 4.09
544 567 5.392811 CCTGAAATCTGAGAATTTGTGGAGC 60.393 44.000 0.00 0.00 0.00 4.70
545 568 5.125097 CCCTGAAATCTGAGAATTTGTGGAG 59.875 44.000 0.00 0.00 0.00 3.86
546 569 5.012239 CCCTGAAATCTGAGAATTTGTGGA 58.988 41.667 0.00 0.00 0.00 4.02
547 570 5.012239 TCCCTGAAATCTGAGAATTTGTGG 58.988 41.667 0.00 0.00 0.00 4.17
548 571 5.392811 GCTCCCTGAAATCTGAGAATTTGTG 60.393 44.000 0.00 0.00 0.00 3.33
549 572 4.704057 GCTCCCTGAAATCTGAGAATTTGT 59.296 41.667 0.00 0.00 0.00 2.83
550 573 4.948621 AGCTCCCTGAAATCTGAGAATTTG 59.051 41.667 0.00 0.00 0.00 2.32
551 574 4.948621 CAGCTCCCTGAAATCTGAGAATTT 59.051 41.667 0.00 0.00 41.77 1.82
552 575 4.525024 CAGCTCCCTGAAATCTGAGAATT 58.475 43.478 0.00 0.00 41.77 2.17
553 576 3.117963 CCAGCTCCCTGAAATCTGAGAAT 60.118 47.826 0.00 0.00 41.77 2.40
554 577 2.238144 CCAGCTCCCTGAAATCTGAGAA 59.762 50.000 0.00 0.00 41.77 2.87
555 578 1.836166 CCAGCTCCCTGAAATCTGAGA 59.164 52.381 0.00 0.00 41.77 3.27
556 579 1.836166 TCCAGCTCCCTGAAATCTGAG 59.164 52.381 0.00 0.00 41.77 3.35
557 580 1.836166 CTCCAGCTCCCTGAAATCTGA 59.164 52.381 0.00 0.00 41.77 3.27
558 581 1.134159 CCTCCAGCTCCCTGAAATCTG 60.134 57.143 0.00 0.00 41.77 2.90
559 582 1.211456 CCTCCAGCTCCCTGAAATCT 58.789 55.000 0.00 0.00 41.77 2.40
560 583 1.134250 GTCCTCCAGCTCCCTGAAATC 60.134 57.143 0.00 0.00 41.77 2.17
561 584 0.915364 GTCCTCCAGCTCCCTGAAAT 59.085 55.000 0.00 0.00 41.77 2.17
562 585 0.178891 AGTCCTCCAGCTCCCTGAAA 60.179 55.000 0.00 0.00 41.77 2.69
563 586 0.906756 CAGTCCTCCAGCTCCCTGAA 60.907 60.000 0.00 0.00 41.77 3.02
564 587 1.305633 CAGTCCTCCAGCTCCCTGA 60.306 63.158 0.00 0.00 41.77 3.86
565 588 3.028921 GCAGTCCTCCAGCTCCCTG 62.029 68.421 0.00 0.00 38.85 4.45
566 589 2.686835 GCAGTCCTCCAGCTCCCT 60.687 66.667 0.00 0.00 0.00 4.20
567 590 3.791586 GGCAGTCCTCCAGCTCCC 61.792 72.222 0.00 0.00 0.00 4.30
568 591 4.154347 CGGCAGTCCTCCAGCTCC 62.154 72.222 0.00 0.00 0.00 4.70
569 592 2.650116 TTCGGCAGTCCTCCAGCTC 61.650 63.158 0.00 0.00 0.00 4.09
570 593 2.604686 TTCGGCAGTCCTCCAGCT 60.605 61.111 0.00 0.00 0.00 4.24
571 594 2.435059 GTTCGGCAGTCCTCCAGC 60.435 66.667 0.00 0.00 0.00 4.85
572 595 1.079543 CTGTTCGGCAGTCCTCCAG 60.080 63.158 0.00 0.00 40.27 3.86
573 596 3.059982 CTGTTCGGCAGTCCTCCA 58.940 61.111 0.00 0.00 40.27 3.86
574 597 2.435059 GCTGTTCGGCAGTCCTCC 60.435 66.667 9.08 0.00 46.64 4.30
575 598 2.435059 GGCTGTTCGGCAGTCCTC 60.435 66.667 5.97 0.00 43.72 3.71
579 602 3.429372 TTTGGGGCTGTTCGGCAGT 62.429 57.895 5.97 0.00 46.64 4.40
581 604 2.597217 CTTTGGGGCTGTTCGGCA 60.597 61.111 5.97 0.00 40.61 5.69
582 605 2.597510 ACTTTGGGGCTGTTCGGC 60.598 61.111 0.00 0.00 37.49 5.54
583 606 0.821711 TTGACTTTGGGGCTGTTCGG 60.822 55.000 0.00 0.00 0.00 4.30
584 607 1.028905 TTTGACTTTGGGGCTGTTCG 58.971 50.000 0.00 0.00 0.00 3.95
585 608 3.069443 TCATTTTGACTTTGGGGCTGTTC 59.931 43.478 0.00 0.00 0.00 3.18
586 609 3.037549 TCATTTTGACTTTGGGGCTGTT 58.962 40.909 0.00 0.00 0.00 3.16
587 610 2.365293 GTCATTTTGACTTTGGGGCTGT 59.635 45.455 0.45 0.00 43.73 4.40
588 611 2.607771 CGTCATTTTGACTTTGGGGCTG 60.608 50.000 6.13 0.00 44.85 4.85
589 612 1.613437 CGTCATTTTGACTTTGGGGCT 59.387 47.619 6.13 0.00 44.85 5.19
590 613 1.611491 TCGTCATTTTGACTTTGGGGC 59.389 47.619 6.13 0.00 44.85 5.80
591 614 2.884639 ACTCGTCATTTTGACTTTGGGG 59.115 45.455 6.13 0.00 44.85 4.96
592 615 5.468746 TCTTACTCGTCATTTTGACTTTGGG 59.531 40.000 6.13 0.00 44.85 4.12
593 616 6.423905 TCTCTTACTCGTCATTTTGACTTTGG 59.576 38.462 6.13 0.00 44.85 3.28
725 752 4.055654 GCCATGGAAGCGGAGATC 57.944 61.111 18.40 0.00 0.00 2.75
801 863 4.838486 GGCTGCGAGACGAGACCG 62.838 72.222 0.00 0.00 42.50 4.79
846 908 2.552367 GAGGGAAGAGGAGAAAAGGGA 58.448 52.381 0.00 0.00 0.00 4.20
851 913 5.339423 AAAAATGGAGGGAAGAGGAGAAA 57.661 39.130 0.00 0.00 0.00 2.52
894 956 4.410400 GTCTGGGGGTTCTGCGGG 62.410 72.222 0.00 0.00 0.00 6.13
897 959 1.600916 GTGTGTCTGGGGGTTCTGC 60.601 63.158 0.00 0.00 0.00 4.26
899 961 2.516888 CGGTGTGTCTGGGGGTTCT 61.517 63.158 0.00 0.00 0.00 3.01
900 962 2.032071 CGGTGTGTCTGGGGGTTC 59.968 66.667 0.00 0.00 0.00 3.62
1087 1170 2.105006 ACTGACAGCCACATCATGAC 57.895 50.000 1.25 0.00 0.00 3.06
1325 1505 2.352229 CACAGCACCAAACGCACG 60.352 61.111 0.00 0.00 0.00 5.34
1478 1685 4.432741 GGAGCAGGTTGGGGAGCC 62.433 72.222 0.00 0.00 0.00 4.70
1491 1698 1.556911 TCTTCCAACATCCTCTGGAGC 59.443 52.381 0.00 0.00 42.61 4.70
1500 1707 4.730657 CATGAAACTGCTCTTCCAACATC 58.269 43.478 0.00 0.00 0.00 3.06
1519 1726 2.370281 ACGTACCTGTGAAGAGCATG 57.630 50.000 0.00 0.00 0.00 4.06
1699 2101 6.885735 GCGATGGCTGTTTATTTGTTTATT 57.114 33.333 0.00 0.00 35.83 1.40
1783 2205 9.482627 GAAATAGTGCTATGCTTATCAAGTACT 57.517 33.333 0.00 0.00 38.30 2.73
1784 2206 9.261180 TGAAATAGTGCTATGCTTATCAAGTAC 57.739 33.333 0.00 0.00 0.00 2.73
1801 2420 7.607991 ACTTGATAACCTGAACCTGAAATAGTG 59.392 37.037 0.00 0.00 0.00 2.74
2005 2830 4.504461 ACAGTTGATCGAATCGTATCTTGC 59.496 41.667 1.52 0.87 0.00 4.01
2128 2958 5.395324 GCTGCTTGTCTTCCTTGTACCTATA 60.395 44.000 0.00 0.00 0.00 1.31
2133 2963 2.772287 AGCTGCTTGTCTTCCTTGTAC 58.228 47.619 0.00 0.00 0.00 2.90
2142 2972 1.419387 AGGAAGTGAAGCTGCTTGTCT 59.581 47.619 21.25 14.03 0.00 3.41
2206 3036 3.410631 TCAAAGAACATGTAGGGCGAA 57.589 42.857 0.00 0.00 0.00 4.70
2281 3453 2.173569 AGGCAGTGACAAGAGGAAGTTT 59.826 45.455 0.00 0.00 0.00 2.66
2284 3456 1.345741 TGAGGCAGTGACAAGAGGAAG 59.654 52.381 0.00 0.00 0.00 3.46
2410 3592 7.450074 ACTGAACATCCAGTGAAAAGTGTATA 58.550 34.615 0.00 0.00 44.93 1.47
2427 3609 4.400251 CCATTCTGCCATTGTACTGAACAT 59.600 41.667 0.00 0.00 38.10 2.71
2890 4122 9.869757 GGCTAACTATGGAAAACAATAAAATGT 57.130 29.630 0.00 0.00 34.24 2.71
2891 4123 9.019764 CGGCTAACTATGGAAAACAATAAAATG 57.980 33.333 0.00 0.00 0.00 2.32
2892 4124 8.962679 TCGGCTAACTATGGAAAACAATAAAAT 58.037 29.630 0.00 0.00 0.00 1.82
2916 4196 1.784525 AAGGACGAGCTTGTTCTTCG 58.215 50.000 20.52 4.77 31.98 3.79
3036 4502 4.776837 TGTCTGCCAATCCCAAATATGTTT 59.223 37.500 0.00 0.00 0.00 2.83
3038 4504 3.979911 TGTCTGCCAATCCCAAATATGT 58.020 40.909 0.00 0.00 0.00 2.29
3039 4505 5.540400 AATGTCTGCCAATCCCAAATATG 57.460 39.130 0.00 0.00 0.00 1.78
3040 4506 7.860649 AATAATGTCTGCCAATCCCAAATAT 57.139 32.000 0.00 0.00 0.00 1.28
3220 4787 4.593206 AGGAGGTCATACAGTTTTGACTGA 59.407 41.667 13.02 0.00 41.55 3.41
3272 4845 3.311871 GTCAGATTCGAAGTACCGCTAGA 59.688 47.826 3.35 0.00 0.00 2.43
3777 5509 8.182881 GCTGGATATCTTATTTCAGCAATGATC 58.817 37.037 18.73 0.00 44.68 2.92
4139 7438 8.762481 TCAACTGGCTAACTATGATAGAAGTA 57.238 34.615 6.45 0.00 0.00 2.24
4239 8262 3.795101 CGTCAAACTTCTTATACGCGGAT 59.205 43.478 9.74 9.74 0.00 4.18
4331 8360 3.053842 AGGACCTGCATCATTGTTCAGAT 60.054 43.478 0.00 0.00 0.00 2.90
4390 8422 2.677524 ATGTTGTGCGGCCATGCT 60.678 55.556 2.24 0.00 35.36 3.79
4421 8453 4.471904 ACAAAGATCAGCGATGGAACTA 57.528 40.909 0.00 0.00 0.00 2.24
4422 8454 3.340814 ACAAAGATCAGCGATGGAACT 57.659 42.857 0.00 0.00 0.00 3.01
4692 8809 9.646522 AAAACTACCAGAATTCATAAGGCATAT 57.353 29.630 8.44 0.00 0.00 1.78
4701 8818 5.269554 TCCCCAAAACTACCAGAATTCAT 57.730 39.130 8.44 0.00 0.00 2.57
4711 8828 3.826729 AGCAAGTTGATCCCCAAAACTAC 59.173 43.478 7.16 0.00 36.36 2.73
5004 9157 5.248477 ACAGGATAAGAAGTAACAGGAGCAA 59.752 40.000 0.00 0.00 0.00 3.91
5174 9352 2.554032 AGCCTGCACATTGTTAACTGAC 59.446 45.455 7.22 0.00 0.00 3.51
5303 9538 8.340618 TCATGACATAGAAAAGGGAAGAAAAG 57.659 34.615 0.00 0.00 0.00 2.27
5445 9682 7.201652 GGAGCTTAATTGTCAACAGAGGTAATC 60.202 40.741 0.00 0.00 0.00 1.75
5580 9899 6.472163 GGCATTTCAATAATTTGGTACTCACG 59.528 38.462 0.00 0.00 33.44 4.35
5581 9900 6.472163 CGGCATTTCAATAATTTGGTACTCAC 59.528 38.462 0.00 0.00 33.44 3.51
5605 9925 4.766404 AATTGTAACTTTGAAGGAGCCG 57.234 40.909 0.00 0.00 0.00 5.52
5668 9991 3.066621 TGCTGAAATGAAACAAACGCTCT 59.933 39.130 0.00 0.00 0.00 4.09
5699 10022 4.481463 CGTAAAATTGGCTGTCGGAATTT 58.519 39.130 0.00 0.00 32.01 1.82
5778 10101 8.162878 TGAATACTTTACTATGGTAGAGGACG 57.837 38.462 10.87 0.00 35.31 4.79
5866 10195 6.725246 ACAAATTTAGCATATACGGAGCAAC 58.275 36.000 0.00 0.00 0.00 4.17
5874 10203 9.233232 GCAACAGGTAACAAATTTAGCATATAC 57.767 33.333 0.00 0.00 41.41 1.47
5890 10219 6.320164 AGACAAATGTTTACTGCAACAGGTAA 59.680 34.615 0.00 0.00 40.01 2.85
5941 10270 4.006319 GCAAGCCAGATACTCTCTTTTGT 58.994 43.478 0.00 0.00 29.16 2.83
5942 10271 4.005650 TGCAAGCCAGATACTCTCTTTTG 58.994 43.478 0.00 0.00 29.16 2.44
5944 10273 3.604582 GTGCAAGCCAGATACTCTCTTT 58.395 45.455 0.00 0.00 29.16 2.52
5945 10274 2.093235 GGTGCAAGCCAGATACTCTCTT 60.093 50.000 0.00 0.00 29.16 2.85
5946 10275 1.484240 GGTGCAAGCCAGATACTCTCT 59.516 52.381 0.00 0.00 33.14 3.10
5947 10276 1.946745 GGTGCAAGCCAGATACTCTC 58.053 55.000 0.00 0.00 0.00 3.20
6089 10419 7.848223 TCATACTATGACTGAAAATGTGTGG 57.152 36.000 0.00 0.00 33.59 4.17
6167 10497 7.311092 AGCTAGTCTAGTATCTCTTCTGCTA 57.689 40.000 8.68 0.00 0.00 3.49
6186 10516 7.474398 TGTCTAACAGTACGTATGTAGCTAG 57.526 40.000 0.00 4.34 0.00 3.42
6202 10532 6.172630 ACATGTCAGTATTGCATGTCTAACA 58.827 36.000 16.71 0.29 42.75 2.41
6203 10533 6.668541 ACATGTCAGTATTGCATGTCTAAC 57.331 37.500 16.71 0.00 42.75 2.34
6208 10538 3.371898 CGTGACATGTCAGTATTGCATGT 59.628 43.478 28.54 20.11 45.75 3.21
6209 10539 3.786489 GCGTGACATGTCAGTATTGCATG 60.786 47.826 28.54 11.27 40.75 4.06
6210 10540 2.352651 GCGTGACATGTCAGTATTGCAT 59.647 45.455 28.54 0.00 40.75 3.96
6211 10541 1.731709 GCGTGACATGTCAGTATTGCA 59.268 47.619 28.54 1.82 40.75 4.08
6212 10542 1.731709 TGCGTGACATGTCAGTATTGC 59.268 47.619 28.54 23.84 40.75 3.56
6223 10553 2.872245 GCCACTTATACATGCGTGACAT 59.128 45.455 14.17 7.89 40.66 3.06
6224 10554 2.276201 GCCACTTATACATGCGTGACA 58.724 47.619 14.17 0.00 0.00 3.58
6225 10555 2.276201 TGCCACTTATACATGCGTGAC 58.724 47.619 14.17 0.00 0.00 3.67
6226 10556 2.682155 TGCCACTTATACATGCGTGA 57.318 45.000 14.17 0.00 0.00 4.35
6227 10557 2.613595 ACATGCCACTTATACATGCGTG 59.386 45.455 3.82 3.82 43.96 5.34
6228 10558 2.872245 GACATGCCACTTATACATGCGT 59.128 45.455 0.00 0.00 43.96 5.24
6229 10559 2.871633 TGACATGCCACTTATACATGCG 59.128 45.455 0.00 0.00 43.96 4.73
6230 10560 3.303329 CGTGACATGCCACTTATACATGC 60.303 47.826 10.57 0.00 43.96 4.06
6231 10561 3.871006 ACGTGACATGCCACTTATACATG 59.129 43.478 10.57 0.00 45.28 3.21
6232 10562 4.137116 ACGTGACATGCCACTTATACAT 57.863 40.909 10.57 0.00 35.02 2.29
6233 10563 3.603158 ACGTGACATGCCACTTATACA 57.397 42.857 10.57 0.00 35.02 2.29
6234 10564 5.983720 AGAATACGTGACATGCCACTTATAC 59.016 40.000 10.79 0.85 32.53 1.47
6235 10565 6.040504 AGAGAATACGTGACATGCCACTTATA 59.959 38.462 10.79 1.81 32.53 0.98
6236 10566 5.023533 AGAATACGTGACATGCCACTTAT 57.976 39.130 10.57 7.87 34.33 1.73
6237 10567 4.159693 AGAGAATACGTGACATGCCACTTA 59.840 41.667 10.57 5.71 35.02 2.24
6238 10568 3.055819 AGAGAATACGTGACATGCCACTT 60.056 43.478 10.57 3.40 35.02 3.16
6239 10569 2.497675 AGAGAATACGTGACATGCCACT 59.502 45.455 10.57 0.52 35.02 4.00
6240 10570 2.893637 AGAGAATACGTGACATGCCAC 58.106 47.619 1.44 1.44 0.00 5.01
6241 10571 3.610040 AAGAGAATACGTGACATGCCA 57.390 42.857 0.00 0.00 0.00 4.92
6242 10572 4.946784 AAAAGAGAATACGTGACATGCC 57.053 40.909 0.00 0.00 0.00 4.40
6268 10598 9.004231 ACCTCCTAACAATATCTCCTAATGTTT 57.996 33.333 0.00 0.00 35.53 2.83
6269 10599 8.568617 ACCTCCTAACAATATCTCCTAATGTT 57.431 34.615 0.00 0.00 37.28 2.71
6270 10600 8.568617 AACCTCCTAACAATATCTCCTAATGT 57.431 34.615 0.00 0.00 0.00 2.71
6273 10603 9.589461 CTCTAACCTCCTAACAATATCTCCTAA 57.411 37.037 0.00 0.00 0.00 2.69
6274 10604 8.956860 TCTCTAACCTCCTAACAATATCTCCTA 58.043 37.037 0.00 0.00 0.00 2.94
6275 10605 7.827787 TCTCTAACCTCCTAACAATATCTCCT 58.172 38.462 0.00 0.00 0.00 3.69
6276 10606 8.658840 ATCTCTAACCTCCTAACAATATCTCC 57.341 38.462 0.00 0.00 0.00 3.71
6317 10647 9.369672 GGGAGGTTTAGAGAGATAAAGAGATAA 57.630 37.037 0.00 0.00 0.00 1.75
6318 10648 8.738592 AGGGAGGTTTAGAGAGATAAAGAGATA 58.261 37.037 0.00 0.00 0.00 1.98
6319 10649 7.508977 CAGGGAGGTTTAGAGAGATAAAGAGAT 59.491 40.741 0.00 0.00 0.00 2.75
6320 10650 6.836527 CAGGGAGGTTTAGAGAGATAAAGAGA 59.163 42.308 0.00 0.00 0.00 3.10
6321 10651 6.609616 ACAGGGAGGTTTAGAGAGATAAAGAG 59.390 42.308 0.00 0.00 0.00 2.85
6322 10652 6.503944 ACAGGGAGGTTTAGAGAGATAAAGA 58.496 40.000 0.00 0.00 0.00 2.52
6323 10653 6.800072 ACAGGGAGGTTTAGAGAGATAAAG 57.200 41.667 0.00 0.00 0.00 1.85
6324 10654 8.855804 ATTACAGGGAGGTTTAGAGAGATAAA 57.144 34.615 0.00 0.00 0.00 1.40
6325 10655 8.290277 AGATTACAGGGAGGTTTAGAGAGATAA 58.710 37.037 0.00 0.00 0.00 1.75
6326 10656 7.827787 AGATTACAGGGAGGTTTAGAGAGATA 58.172 38.462 0.00 0.00 0.00 1.98
6327 10657 6.688554 AGATTACAGGGAGGTTTAGAGAGAT 58.311 40.000 0.00 0.00 0.00 2.75
6328 10658 6.093617 AGATTACAGGGAGGTTTAGAGAGA 57.906 41.667 0.00 0.00 0.00 3.10
6329 10659 6.609616 AGAAGATTACAGGGAGGTTTAGAGAG 59.390 42.308 0.00 0.00 0.00 3.20
6330 10660 6.503944 AGAAGATTACAGGGAGGTTTAGAGA 58.496 40.000 0.00 0.00 0.00 3.10
6331 10661 6.183360 GGAGAAGATTACAGGGAGGTTTAGAG 60.183 46.154 0.00 0.00 0.00 2.43
6332 10662 5.661759 GGAGAAGATTACAGGGAGGTTTAGA 59.338 44.000 0.00 0.00 0.00 2.10
6333 10663 5.663556 AGGAGAAGATTACAGGGAGGTTTAG 59.336 44.000 0.00 0.00 0.00 1.85
6334 10664 5.600749 AGGAGAAGATTACAGGGAGGTTTA 58.399 41.667 0.00 0.00 0.00 2.01
6335 10665 4.439860 AGGAGAAGATTACAGGGAGGTTT 58.560 43.478 0.00 0.00 0.00 3.27
6336 10666 4.081695 AGGAGAAGATTACAGGGAGGTT 57.918 45.455 0.00 0.00 0.00 3.50
6337 10667 3.786213 AGGAGAAGATTACAGGGAGGT 57.214 47.619 0.00 0.00 0.00 3.85
6338 10668 4.442192 CGAAAGGAGAAGATTACAGGGAGG 60.442 50.000 0.00 0.00 0.00 4.30
6339 10669 4.688021 CGAAAGGAGAAGATTACAGGGAG 58.312 47.826 0.00 0.00 0.00 4.30
6340 10670 4.737855 CGAAAGGAGAAGATTACAGGGA 57.262 45.455 0.00 0.00 0.00 4.20
6356 10686 1.068541 GCACAAAGGGCTAACCGAAAG 60.069 52.381 0.00 0.00 46.96 2.62
6357 10687 0.955905 GCACAAAGGGCTAACCGAAA 59.044 50.000 0.00 0.00 46.96 3.46
6358 10688 0.109723 AGCACAAAGGGCTAACCGAA 59.890 50.000 0.00 0.00 46.96 4.30
6359 10689 0.605319 CAGCACAAAGGGCTAACCGA 60.605 55.000 0.00 0.00 46.96 4.69
6360 10690 1.875963 CAGCACAAAGGGCTAACCG 59.124 57.895 0.00 0.00 46.96 4.44
6361 10691 1.586541 GCAGCACAAAGGGCTAACC 59.413 57.895 0.00 0.00 40.23 2.85
6362 10692 1.586541 GGCAGCACAAAGGGCTAAC 59.413 57.895 0.00 0.00 40.23 2.34
6363 10693 1.971167 CGGCAGCACAAAGGGCTAA 60.971 57.895 0.00 0.00 40.23 3.09
6364 10694 2.359850 CGGCAGCACAAAGGGCTA 60.360 61.111 0.00 0.00 40.23 3.93
6367 10697 2.361610 ATCCGGCAGCACAAAGGG 60.362 61.111 0.00 0.00 0.00 3.95
6368 10698 1.033746 ATGATCCGGCAGCACAAAGG 61.034 55.000 0.00 0.00 0.00 3.11
6369 10699 0.099968 CATGATCCGGCAGCACAAAG 59.900 55.000 0.00 0.00 0.00 2.77
6370 10700 0.608856 ACATGATCCGGCAGCACAAA 60.609 50.000 0.00 0.00 0.00 2.83
6371 10701 0.251634 TACATGATCCGGCAGCACAA 59.748 50.000 0.00 0.00 0.00 3.33
6372 10702 0.469494 ATACATGATCCGGCAGCACA 59.531 50.000 0.00 0.00 0.00 4.57
6373 10703 1.151668 GATACATGATCCGGCAGCAC 58.848 55.000 0.00 0.00 0.00 4.40
6374 10704 0.758123 TGATACATGATCCGGCAGCA 59.242 50.000 0.00 0.00 33.07 4.41
6375 10705 1.532868 GTTGATACATGATCCGGCAGC 59.467 52.381 0.00 0.00 33.07 5.25
6376 10706 2.146342 GGTTGATACATGATCCGGCAG 58.854 52.381 0.00 0.00 33.07 4.85
6377 10707 1.768275 AGGTTGATACATGATCCGGCA 59.232 47.619 0.00 0.00 33.07 5.69
6378 10708 2.037772 AGAGGTTGATACATGATCCGGC 59.962 50.000 0.00 0.00 33.07 6.13
6379 10709 3.306364 GGAGAGGTTGATACATGATCCGG 60.306 52.174 0.00 0.00 33.07 5.14
6380 10710 3.576118 AGGAGAGGTTGATACATGATCCG 59.424 47.826 0.00 0.00 33.07 4.18
6381 10711 6.438741 TGATAGGAGAGGTTGATACATGATCC 59.561 42.308 0.00 0.00 33.07 3.36
6382 10712 7.473735 TGATAGGAGAGGTTGATACATGATC 57.526 40.000 0.00 0.00 34.84 2.92
6383 10713 7.862274 TTGATAGGAGAGGTTGATACATGAT 57.138 36.000 0.00 0.00 0.00 2.45
6384 10714 7.862274 ATTGATAGGAGAGGTTGATACATGA 57.138 36.000 0.00 0.00 0.00 3.07
6394 10724 8.801299 CGCATGATATATATTGATAGGAGAGGT 58.199 37.037 0.00 0.00 0.00 3.85
6395 10725 8.249638 CCGCATGATATATATTGATAGGAGAGG 58.750 40.741 0.00 0.00 0.00 3.69
6399 10729 7.730332 AGACCCGCATGATATATATTGATAGGA 59.270 37.037 0.00 0.00 0.00 2.94
6428 10758 2.025155 AGCGTCTCAATCTCCGTACAT 58.975 47.619 0.00 0.00 0.00 2.29
6450 10780 5.868454 TGTATACCATGTGGAGAATGATGG 58.132 41.667 5.96 0.00 41.11 3.51
6502 10832 1.911357 TGTCGAGAGGTAGGAGGTACA 59.089 52.381 0.00 0.00 32.62 2.90
6525 10855 2.029666 GGACGATGGAGATGGGCG 59.970 66.667 0.00 0.00 0.00 6.13
6532 10862 1.139058 CTTAGGTTGGGGACGATGGAG 59.861 57.143 0.00 0.00 0.00 3.86
6545 10875 2.555448 GGCTGAAGGGAAAGCTTAGGTT 60.555 50.000 0.00 0.00 39.46 3.50
6547 10877 1.683319 GGGCTGAAGGGAAAGCTTAGG 60.683 57.143 0.00 0.00 39.46 2.69
6549 10879 0.035439 CGGGCTGAAGGGAAAGCTTA 60.035 55.000 0.00 0.00 39.46 3.09
6550 10880 1.303643 CGGGCTGAAGGGAAAGCTT 60.304 57.895 0.00 0.00 39.46 3.74
6551 10881 2.352805 CGGGCTGAAGGGAAAGCT 59.647 61.111 0.00 0.00 39.46 3.74
6552 10882 3.443925 GCGGGCTGAAGGGAAAGC 61.444 66.667 0.00 0.00 38.76 3.51
6554 10884 3.575247 TGGCGGGCTGAAGGGAAA 61.575 61.111 0.00 0.00 0.00 3.13
6559 10889 4.431131 ATGGGTGGCGGGCTGAAG 62.431 66.667 0.00 0.00 0.00 3.02
6560 10890 4.424711 GATGGGTGGCGGGCTGAA 62.425 66.667 0.00 0.00 0.00 3.02
6588 10919 0.321653 GCGGTGTTGGAGGAAGACAT 60.322 55.000 0.00 0.00 29.09 3.06
6601 10932 2.284625 TGGAGGAGATGGCGGTGT 60.285 61.111 0.00 0.00 0.00 4.16
6605 10936 2.765807 AGGGTGGAGGAGATGGCG 60.766 66.667 0.00 0.00 0.00 5.69
6608 10939 1.577736 AGTTGAGGGTGGAGGAGATG 58.422 55.000 0.00 0.00 0.00 2.90
6609 10940 2.044492 TGTAGTTGAGGGTGGAGGAGAT 59.956 50.000 0.00 0.00 0.00 2.75
6611 10942 1.938585 TGTAGTTGAGGGTGGAGGAG 58.061 55.000 0.00 0.00 0.00 3.69
6647 10978 0.323957 AAGCTTAGGTTGGGGACGAC 59.676 55.000 0.00 0.00 44.59 4.34
6648 10979 1.002773 GAAAGCTTAGGTTGGGGACGA 59.997 52.381 0.00 0.00 0.00 4.20
6650 10981 1.616187 GGGAAAGCTTAGGTTGGGGAC 60.616 57.143 0.00 0.00 0.00 4.46
6651 10982 0.702316 GGGAAAGCTTAGGTTGGGGA 59.298 55.000 0.00 0.00 0.00 4.81
6653 10984 2.225017 TGAAGGGAAAGCTTAGGTTGGG 60.225 50.000 0.00 0.00 0.00 4.12
6654 10985 3.084786 CTGAAGGGAAAGCTTAGGTTGG 58.915 50.000 0.00 0.00 0.00 3.77
6656 10987 2.555448 GGCTGAAGGGAAAGCTTAGGTT 60.555 50.000 0.00 0.00 39.46 3.50
6658 10989 1.683319 GGGCTGAAGGGAAAGCTTAGG 60.683 57.143 0.00 0.00 39.46 2.69
6662 10993 2.352805 CGGGCTGAAGGGAAAGCT 59.647 61.111 0.00 0.00 39.46 3.74
6664 10995 2.751837 GGCGGGCTGAAGGGAAAG 60.752 66.667 0.00 0.00 0.00 2.62
6666 10997 4.344865 GTGGCGGGCTGAAGGGAA 62.345 66.667 0.00 0.00 0.00 3.97
6670 11001 3.944250 AATGGGTGGCGGGCTGAAG 62.944 63.158 0.00 0.00 0.00 3.02
6671 11002 3.936772 GAATGGGTGGCGGGCTGAA 62.937 63.158 0.00 0.00 0.00 3.02
6672 11003 4.424711 GAATGGGTGGCGGGCTGA 62.425 66.667 0.00 0.00 0.00 4.26
6677 11008 4.506255 GAGGGGAATGGGTGGCGG 62.506 72.222 0.00 0.00 0.00 6.13
6679 11010 4.143301 GGGAGGGGAATGGGTGGC 62.143 72.222 0.00 0.00 0.00 5.01
6680 11011 2.011617 GATGGGAGGGGAATGGGTGG 62.012 65.000 0.00 0.00 0.00 4.61
6681 11012 1.288508 TGATGGGAGGGGAATGGGTG 61.289 60.000 0.00 0.00 0.00 4.61
6682 11013 0.329831 ATGATGGGAGGGGAATGGGT 60.330 55.000 0.00 0.00 0.00 4.51
6683 11014 0.113776 CATGATGGGAGGGGAATGGG 59.886 60.000 0.00 0.00 0.00 4.00
6685 11016 1.779092 AGACATGATGGGAGGGGAATG 59.221 52.381 0.00 0.00 0.00 2.67
6688 11019 1.511613 GAAGACATGATGGGAGGGGA 58.488 55.000 0.00 0.00 0.00 4.81
6691 11022 1.419387 GGAGGAAGACATGATGGGAGG 59.581 57.143 0.00 0.00 0.00 4.30
6695 12884 3.012518 GTGTTGGAGGAAGACATGATGG 58.987 50.000 0.00 0.00 0.00 3.51
6701 12890 1.070786 GCGGTGTTGGAGGAAGACA 59.929 57.895 0.00 0.00 29.09 3.41
6706 12895 1.899437 GAGATGGCGGTGTTGGAGGA 61.899 60.000 0.00 0.00 0.00 3.71
6707 12896 1.450312 GAGATGGCGGTGTTGGAGG 60.450 63.158 0.00 0.00 0.00 4.30
6708 12897 1.450312 GGAGATGGCGGTGTTGGAG 60.450 63.158 0.00 0.00 0.00 3.86
6712 12901 3.728373 GGGGGAGATGGCGGTGTT 61.728 66.667 0.00 0.00 0.00 3.32
6718 12907 3.493303 GAGGGTGGGGGAGATGGC 61.493 72.222 0.00 0.00 0.00 4.40
6719 12908 1.619363 TTGAGGGTGGGGGAGATGG 60.619 63.158 0.00 0.00 0.00 3.51
6722 12911 0.252558 GTAGTTGAGGGTGGGGGAGA 60.253 60.000 0.00 0.00 0.00 3.71
6724 12913 0.104356 TTGTAGTTGAGGGTGGGGGA 60.104 55.000 0.00 0.00 0.00 4.81
6725 12914 0.037734 GTTGTAGTTGAGGGTGGGGG 59.962 60.000 0.00 0.00 0.00 5.40
6727 12916 1.142060 TGTGTTGTAGTTGAGGGTGGG 59.858 52.381 0.00 0.00 0.00 4.61
6728 12917 2.631160 TGTGTTGTAGTTGAGGGTGG 57.369 50.000 0.00 0.00 0.00 4.61
6729 12918 4.008074 AGATGTGTTGTAGTTGAGGGTG 57.992 45.455 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.