Multiple sequence alignment - TraesCS5A01G413000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G413000 chr5A 100.000 6155 0 0 1 6155 601467714 601473868 0.000000e+00 11367.0
1 TraesCS5A01G413000 chr5A 82.216 1164 140 34 4912 6050 601501244 601502365 0.000000e+00 941.0
2 TraesCS5A01G413000 chr5A 93.213 442 29 1 4462 4903 601500732 601501172 0.000000e+00 649.0
3 TraesCS5A01G413000 chr5A 84.746 177 23 3 5678 5853 601459013 601459186 2.280000e-39 174.0
4 TraesCS5A01G413000 chr5B 90.122 3685 202 51 415 4002 591140825 591144444 0.000000e+00 4639.0
5 TraesCS5A01G413000 chr5B 90.962 1029 59 14 5115 6140 591146484 591147481 0.000000e+00 1354.0
6 TraesCS5A01G413000 chr5B 94.295 631 32 3 4467 5094 591144793 591145422 0.000000e+00 963.0
7 TraesCS5A01G413000 chr5B 78.309 544 73 20 4679 5196 591152020 591152544 5.990000e-80 309.0
8 TraesCS5A01G413000 chr5B 96.023 176 7 0 1 176 591140290 591140465 2.810000e-73 287.0
9 TraesCS5A01G413000 chr5B 76.718 524 84 26 5472 5981 591151146 591151645 2.200000e-64 257.0
10 TraesCS5A01G413000 chr5B 84.188 234 27 4 4878 5110 591148404 591148628 1.040000e-52 219.0
11 TraesCS5A01G413000 chr5B 89.205 176 16 1 256 428 591140465 591140640 3.740000e-52 217.0
12 TraesCS5A01G413000 chr5B 87.356 87 11 0 175 261 375802191 375802277 3.930000e-17 100.0
13 TraesCS5A01G413000 chr5B 92.308 52 4 0 4381 4432 591144737 591144788 2.380000e-09 75.0
14 TraesCS5A01G413000 chr5D 93.408 2503 106 18 1562 4024 481948534 481951017 0.000000e+00 3653.0
15 TraesCS5A01G413000 chr5D 95.547 1909 53 15 4246 6140 481951031 481952921 0.000000e+00 3025.0
16 TraesCS5A01G413000 chr5D 88.389 956 47 22 581 1504 481947148 481948071 0.000000e+00 1092.0
17 TraesCS5A01G413000 chr5D 95.977 174 7 0 1 174 481946284 481946457 3.630000e-72 283.0
18 TraesCS5A01G413000 chr5D 87.615 218 26 1 4665 4882 481973742 481973958 1.020000e-62 252.0
19 TraesCS5A01G413000 chr5D 90.556 180 17 0 254 433 481946451 481946630 7.970000e-59 239.0
20 TraesCS5A01G413000 chr7D 75.241 311 62 14 2061 2364 431875071 431875373 3.870000e-27 134.0
21 TraesCS5A01G413000 chr7D 79.070 86 18 0 172 257 101615706 101615791 6.660000e-05 60.2
22 TraesCS5A01G413000 chr7B 75.000 308 63 13 2064 2364 450646464 450646164 5.010000e-26 130.0
23 TraesCS5A01G413000 chr7B 94.000 50 2 1 208 257 587902902 587902950 2.380000e-09 75.0
24 TraesCS5A01G413000 chr7B 81.818 88 13 2 173 257 572047141 572047054 3.080000e-08 71.3
25 TraesCS5A01G413000 chr7A 75.399 313 53 19 2064 2364 501160003 501159703 5.010000e-26 130.0
26 TraesCS5A01G413000 chr1A 91.860 86 7 0 172 257 313908388 313908473 3.010000e-23 121.0
27 TraesCS5A01G413000 chr1A 88.235 85 10 0 173 257 313908473 313908389 1.090000e-17 102.0
28 TraesCS5A01G413000 chr3D 91.463 82 7 0 172 253 112360502 112360421 5.040000e-21 113.0
29 TraesCS5A01G413000 chr2A 90.588 85 8 0 173 257 614574874 614574958 5.040000e-21 113.0
30 TraesCS5A01G413000 chr2B 83.721 86 14 0 172 257 190651257 190651172 1.420000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G413000 chr5A 601467714 601473868 6154 False 11367.000000 11367 100.000000 1 6155 1 chr5A.!!$F2 6154
1 TraesCS5A01G413000 chr5A 601500732 601502365 1633 False 795.000000 941 87.714500 4462 6050 2 chr5A.!!$F3 1588
2 TraesCS5A01G413000 chr5B 591140290 591152544 12254 False 924.444444 4639 88.014444 1 6140 9 chr5B.!!$F2 6139
3 TraesCS5A01G413000 chr5D 481946284 481952921 6637 False 1658.400000 3653 92.775400 1 6140 5 chr5D.!!$F2 6139

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
557 1099 0.111253 CACCCTGCCCAAAGACTTCT 59.889 55.0 0.00 0.0 0.00 2.85 F
1217 1887 0.038021 TTGCTGGCTGCTGGTTGATA 59.962 50.0 17.45 0.0 43.37 2.15 F
1225 1895 0.106708 TGCTGGTTGATATCGCTCCC 59.893 55.0 0.00 0.0 0.00 4.30 F
1540 2225 0.877743 GGTCAGCTCAGCAAAGAACC 59.122 55.0 0.00 0.0 0.00 3.62 F
3353 4476 0.943359 GCAGAGATCGCTCCATTCCG 60.943 60.0 0.00 0.0 42.30 4.30 F
4165 5294 0.108520 ACGTGTGGTTGTCGTCTTGT 60.109 50.0 0.00 0.0 32.26 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1457 2137 1.024579 AACCATAGGCGCGAAACCAG 61.025 55.000 12.10 0.0 0.00 4.00 R
2926 4047 2.846827 AGAGGTTTTTCAGATCCCCGAT 59.153 45.455 0.00 0.0 0.00 4.18 R
3272 4395 2.458951 CTTTGCTAAAACACGCTGCAA 58.541 42.857 0.00 0.0 41.10 4.08 R
3373 4496 2.287427 CCTCTGCACTGCTTCTTTTGTG 60.287 50.000 1.98 0.0 0.00 3.33 R
4231 5360 0.178992 TGCTTTCTGGACCAAGGTGG 60.179 55.000 0.00 0.0 45.02 4.61 R
5482 7799 1.021390 CCTCCATCACCTGCAACGTC 61.021 60.000 0.00 0.0 0.00 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 6.756542 TGCCATCTGATTACGTATGCATATAC 59.243 38.462 10.16 0.00 36.60 1.47
92 93 6.605471 TGTATTACCGAGCTGGATATGAAT 57.395 37.500 8.91 0.00 42.00 2.57
160 161 7.162761 TCTATCAAATTCCGTTACTTTGGTCA 58.837 34.615 0.00 0.00 32.15 4.02
168 169 3.117794 CGTTACTTTGGTCACGTCTCAA 58.882 45.455 0.00 0.00 38.00 3.02
176 177 4.436242 TGGTCACGTCTCAATTCTACTC 57.564 45.455 0.00 0.00 0.00 2.59
177 178 3.192844 TGGTCACGTCTCAATTCTACTCC 59.807 47.826 0.00 0.00 0.00 3.85
178 179 3.429135 GGTCACGTCTCAATTCTACTCCC 60.429 52.174 0.00 0.00 0.00 4.30
179 180 3.444388 GTCACGTCTCAATTCTACTCCCT 59.556 47.826 0.00 0.00 0.00 4.20
180 181 3.695060 TCACGTCTCAATTCTACTCCCTC 59.305 47.826 0.00 0.00 0.00 4.30
181 182 3.025262 ACGTCTCAATTCTACTCCCTCC 58.975 50.000 0.00 0.00 0.00 4.30
182 183 2.033550 CGTCTCAATTCTACTCCCTCCG 59.966 54.545 0.00 0.00 0.00 4.63
183 184 3.025262 GTCTCAATTCTACTCCCTCCGT 58.975 50.000 0.00 0.00 0.00 4.69
184 185 4.205587 GTCTCAATTCTACTCCCTCCGTA 58.794 47.826 0.00 0.00 0.00 4.02
185 186 4.036616 GTCTCAATTCTACTCCCTCCGTAC 59.963 50.000 0.00 0.00 0.00 3.67
186 187 3.294214 TCAATTCTACTCCCTCCGTACC 58.706 50.000 0.00 0.00 0.00 3.34
187 188 3.028850 CAATTCTACTCCCTCCGTACCA 58.971 50.000 0.00 0.00 0.00 3.25
188 189 3.614568 ATTCTACTCCCTCCGTACCAT 57.385 47.619 0.00 0.00 0.00 3.55
189 190 4.736611 ATTCTACTCCCTCCGTACCATA 57.263 45.455 0.00 0.00 0.00 2.74
190 191 4.524802 TTCTACTCCCTCCGTACCATAA 57.475 45.455 0.00 0.00 0.00 1.90
191 192 4.736611 TCTACTCCCTCCGTACCATAAT 57.263 45.455 0.00 0.00 0.00 1.28
192 193 4.404640 TCTACTCCCTCCGTACCATAATG 58.595 47.826 0.00 0.00 0.00 1.90
193 194 3.042059 ACTCCCTCCGTACCATAATGT 57.958 47.619 0.00 0.00 0.00 2.71
194 195 4.188937 ACTCCCTCCGTACCATAATGTA 57.811 45.455 0.00 0.00 0.00 2.29
195 196 4.748701 ACTCCCTCCGTACCATAATGTAT 58.251 43.478 0.00 0.00 0.00 2.29
196 197 4.527038 ACTCCCTCCGTACCATAATGTATG 59.473 45.833 0.00 0.00 35.94 2.39
197 198 4.485875 TCCCTCCGTACCATAATGTATGT 58.514 43.478 0.00 0.00 34.36 2.29
198 199 4.525487 TCCCTCCGTACCATAATGTATGTC 59.475 45.833 0.00 0.00 34.36 3.06
199 200 4.482386 CCTCCGTACCATAATGTATGTCG 58.518 47.826 0.00 0.00 34.36 4.35
200 201 3.904571 TCCGTACCATAATGTATGTCGC 58.095 45.455 0.00 0.00 34.36 5.19
201 202 3.570975 TCCGTACCATAATGTATGTCGCT 59.429 43.478 0.00 0.00 34.36 4.93
202 203 4.038282 TCCGTACCATAATGTATGTCGCTT 59.962 41.667 0.00 0.00 34.36 4.68
203 204 4.748102 CCGTACCATAATGTATGTCGCTTT 59.252 41.667 0.00 0.00 34.36 3.51
204 205 5.921976 CCGTACCATAATGTATGTCGCTTTA 59.078 40.000 0.00 0.00 34.36 1.85
205 206 6.089016 CCGTACCATAATGTATGTCGCTTTAG 59.911 42.308 0.00 0.00 34.36 1.85
206 207 5.924475 ACCATAATGTATGTCGCTTTAGC 57.076 39.130 0.00 0.00 34.36 3.09
207 208 5.364778 ACCATAATGTATGTCGCTTTAGCA 58.635 37.500 2.29 0.00 36.22 3.49
208 209 5.466728 ACCATAATGTATGTCGCTTTAGCAG 59.533 40.000 2.29 0.00 36.22 4.24
209 210 5.466728 CCATAATGTATGTCGCTTTAGCAGT 59.533 40.000 2.29 0.00 36.22 4.40
210 211 6.017934 CCATAATGTATGTCGCTTTAGCAGTT 60.018 38.462 2.29 0.00 36.22 3.16
211 212 5.470845 AATGTATGTCGCTTTAGCAGTTC 57.529 39.130 2.29 0.00 42.21 3.01
212 213 3.920446 TGTATGTCGCTTTAGCAGTTCA 58.080 40.909 2.29 0.00 42.21 3.18
213 214 4.311606 TGTATGTCGCTTTAGCAGTTCAA 58.688 39.130 2.29 0.00 42.21 2.69
214 215 4.935205 TGTATGTCGCTTTAGCAGTTCAAT 59.065 37.500 2.29 0.00 42.21 2.57
215 216 5.411361 TGTATGTCGCTTTAGCAGTTCAATT 59.589 36.000 2.29 0.00 42.21 2.32
216 217 4.829064 TGTCGCTTTAGCAGTTCAATTT 57.171 36.364 2.29 0.00 42.21 1.82
217 218 5.933187 TGTCGCTTTAGCAGTTCAATTTA 57.067 34.783 2.29 0.00 42.21 1.40
218 219 6.307031 TGTCGCTTTAGCAGTTCAATTTAA 57.693 33.333 2.29 0.00 42.21 1.52
219 220 6.730175 TGTCGCTTTAGCAGTTCAATTTAAA 58.270 32.000 2.29 0.00 42.21 1.52
220 221 6.635239 TGTCGCTTTAGCAGTTCAATTTAAAC 59.365 34.615 2.29 0.00 42.21 2.01
221 222 6.856426 GTCGCTTTAGCAGTTCAATTTAAACT 59.144 34.615 2.29 0.00 42.21 2.66
231 232 8.555166 CAGTTCAATTTAAACTGCTAAAACGA 57.445 30.769 14.40 0.00 44.94 3.85
232 233 8.469125 CAGTTCAATTTAAACTGCTAAAACGAC 58.531 33.333 14.40 0.00 44.94 4.34
233 234 8.185505 AGTTCAATTTAAACTGCTAAAACGACA 58.814 29.630 2.85 0.00 35.68 4.35
234 235 8.964150 GTTCAATTTAAACTGCTAAAACGACAT 58.036 29.630 0.00 0.00 0.00 3.06
244 245 9.555727 AACTGCTAAAACGACATATATTATGGT 57.444 29.630 0.00 0.00 0.00 3.55
266 267 3.034635 ACAGAGGGAGTACTAGGCAATG 58.965 50.000 0.00 0.00 0.00 2.82
277 278 6.481643 AGTACTAGGCAATGGTTACACAATT 58.518 36.000 0.00 0.00 0.00 2.32
279 280 5.570320 ACTAGGCAATGGTTACACAATTCT 58.430 37.500 0.00 0.00 0.00 2.40
303 304 9.878667 TCTTAATTTATCTGTACAATTCACGGA 57.121 29.630 0.00 1.64 35.81 4.69
439 642 1.533731 CCGCATACGTTCCAACAAAGT 59.466 47.619 0.00 0.00 37.70 2.66
445 648 1.400494 ACGTTCCAACAAAGTGTCTGC 59.600 47.619 0.00 0.00 0.00 4.26
446 649 1.670811 CGTTCCAACAAAGTGTCTGCT 59.329 47.619 0.00 0.00 0.00 4.24
447 650 2.539547 CGTTCCAACAAAGTGTCTGCTG 60.540 50.000 0.00 0.00 0.00 4.41
448 651 2.418368 TCCAACAAAGTGTCTGCTGT 57.582 45.000 0.00 0.00 0.00 4.40
454 657 2.061773 CAAAGTGTCTGCTGTAGGTCG 58.938 52.381 0.00 0.00 0.00 4.79
462 665 1.982938 GCTGTAGGTCGGGTCAGGT 60.983 63.158 0.00 0.00 0.00 4.00
486 689 4.202182 GCGTCCCATAGAACTACCACATTA 60.202 45.833 0.00 0.00 0.00 1.90
494 697 5.950544 AGAACTACCACATTACAGGCATA 57.049 39.130 0.00 0.00 0.00 3.14
509 712 2.143122 GGCATACATATGTGTCCCACG 58.857 52.381 18.81 0.77 39.77 4.94
557 1099 0.111253 CACCCTGCCCAAAGACTTCT 59.889 55.000 0.00 0.00 0.00 2.85
718 1332 0.605589 ACGCTTGGAGAAGGAGTGAG 59.394 55.000 0.00 0.00 0.00 3.51
723 1337 1.554836 TGGAGAAGGAGTGAGCAGAG 58.445 55.000 0.00 0.00 0.00 3.35
724 1338 0.175531 GGAGAAGGAGTGAGCAGAGC 59.824 60.000 0.00 0.00 0.00 4.09
725 1339 0.179140 GAGAAGGAGTGAGCAGAGCG 60.179 60.000 0.00 0.00 0.00 5.03
726 1340 0.897863 AGAAGGAGTGAGCAGAGCGT 60.898 55.000 0.00 0.00 0.00 5.07
778 1409 8.979574 CGATTCTAGTAAACTCCATTATTCACC 58.020 37.037 0.00 0.00 0.00 4.02
952 1587 2.287308 TGAGAAACGCCGGTCAAAAATG 60.287 45.455 1.90 0.00 0.00 2.32
961 1596 2.097304 CCGGTCAAAAATGATGCATCGA 59.903 45.455 21.34 11.23 0.00 3.59
982 1617 2.113910 GACCGTTTGTCGTTGCATTT 57.886 45.000 0.00 0.00 37.94 2.32
1005 1640 2.496070 TGTGACTACATGTAGCTGGGTC 59.504 50.000 28.88 20.19 36.66 4.46
1046 1685 3.556843 CCGGCCACAAAAGATTTTCCATT 60.557 43.478 2.24 0.00 0.00 3.16
1087 1726 0.929734 TCCTAGCTAGTCCCAGGGGT 60.930 60.000 19.31 0.00 36.47 4.95
1103 1742 2.747686 GTGGAACCGAGGCAGGAA 59.252 61.111 6.03 0.00 34.73 3.36
1104 1743 1.072505 GTGGAACCGAGGCAGGAAA 59.927 57.895 6.03 0.00 34.73 3.13
1108 1778 0.391793 GAACCGAGGCAGGAAAGGAG 60.392 60.000 6.03 0.00 34.73 3.69
1152 1822 2.764314 CCATCGCCAAGGCTTTCGG 61.764 63.158 15.72 8.67 39.32 4.30
1208 1878 1.930908 GACCATCTGTTGCTGGCTGC 61.931 60.000 9.67 9.67 43.25 5.25
1210 1880 1.506718 CATCTGTTGCTGGCTGCTG 59.493 57.895 17.45 2.46 43.37 4.41
1212 1882 2.421923 ATCTGTTGCTGGCTGCTGGT 62.422 55.000 17.45 0.00 43.37 4.00
1213 1883 2.123769 TGTTGCTGGCTGCTGGTT 60.124 55.556 17.45 0.00 43.37 3.67
1214 1884 2.337532 GTTGCTGGCTGCTGGTTG 59.662 61.111 17.45 0.00 43.37 3.77
1215 1885 2.195411 TTGCTGGCTGCTGGTTGA 59.805 55.556 17.45 0.00 43.37 3.18
1216 1886 1.228644 TTGCTGGCTGCTGGTTGAT 60.229 52.632 17.45 0.00 43.37 2.57
1217 1887 0.038021 TTGCTGGCTGCTGGTTGATA 59.962 50.000 17.45 0.00 43.37 2.15
1218 1888 0.256752 TGCTGGCTGCTGGTTGATAT 59.743 50.000 17.45 0.00 43.37 1.63
1219 1889 0.950116 GCTGGCTGCTGGTTGATATC 59.050 55.000 9.31 0.00 38.95 1.63
1220 1890 1.224075 CTGGCTGCTGGTTGATATCG 58.776 55.000 0.00 0.00 0.00 2.92
1221 1891 0.815213 TGGCTGCTGGTTGATATCGC 60.815 55.000 0.00 0.00 0.00 4.58
1222 1892 0.533755 GGCTGCTGGTTGATATCGCT 60.534 55.000 0.00 0.00 0.00 4.93
1223 1893 0.864455 GCTGCTGGTTGATATCGCTC 59.136 55.000 0.00 0.00 0.00 5.03
1224 1894 1.506493 CTGCTGGTTGATATCGCTCC 58.494 55.000 0.00 1.38 0.00 4.70
1225 1895 0.106708 TGCTGGTTGATATCGCTCCC 59.893 55.000 0.00 0.00 0.00 4.30
1257 1927 4.814294 GGAGATGCCGCCGTCGTT 62.814 66.667 0.00 0.00 32.12 3.85
1267 1940 2.572284 CCGTCGTTGTCCTCCTCC 59.428 66.667 0.00 0.00 0.00 4.30
1361 2034 2.507944 GCGATCCAGGGTGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
1441 2121 3.179830 ACTCTGATTAGCAAACGCTACG 58.820 45.455 0.00 0.00 41.69 3.51
1457 2137 2.285660 GCTACGTTTCTGCGGCTTAATC 60.286 50.000 0.00 0.00 35.98 1.75
1481 2162 1.022451 TTCGCGCCTATGGTTTGTCC 61.022 55.000 0.00 0.00 0.00 4.02
1540 2225 0.877743 GGTCAGCTCAGCAAAGAACC 59.122 55.000 0.00 0.00 0.00 3.62
1550 2636 3.118038 TCAGCAAAGAACCACCAAGTACT 60.118 43.478 0.00 0.00 0.00 2.73
1581 2667 6.067263 TGCTGTTATCAGTTTGTTGTAACC 57.933 37.500 2.85 0.00 43.05 2.85
1697 2783 2.420022 GCTCTCACGGTAAGTACGGTTA 59.580 50.000 0.00 0.00 37.61 2.85
1699 2785 4.439289 GCTCTCACGGTAAGTACGGTTAAT 60.439 45.833 0.00 0.00 37.61 1.40
1700 2786 5.643379 TCTCACGGTAAGTACGGTTAATT 57.357 39.130 0.00 0.00 37.61 1.40
1701 2787 6.024552 TCTCACGGTAAGTACGGTTAATTT 57.975 37.500 0.00 0.00 37.61 1.82
1702 2788 5.863397 TCTCACGGTAAGTACGGTTAATTTG 59.137 40.000 0.00 0.00 37.61 2.32
1711 2797 9.373750 GTAAGTACGGTTAATTTGAAACTGAAC 57.626 33.333 5.59 0.00 36.82 3.18
1736 2822 6.857964 CACTTTGGTGTATGAATTTGACTCAC 59.142 38.462 0.00 0.00 38.54 3.51
1754 2840 6.013725 TGACTCACCAACTATTATTCTGTGGT 60.014 38.462 0.00 0.00 0.00 4.16
1762 2848 5.784177 ACTATTATTCTGTGGTCTATGCCG 58.216 41.667 0.00 0.00 0.00 5.69
1851 2958 6.714810 AGTTGTTTCTGTATTTGATAGCCACA 59.285 34.615 0.00 0.00 0.00 4.17
1930 3037 5.094812 TGACGCATGAACATATTTTCTTGC 58.905 37.500 22.97 22.97 46.03 4.01
1949 3056 3.169908 TGCAGTGATGTAGTAACCTGGA 58.830 45.455 0.00 0.00 0.00 3.86
1967 3074 4.885907 CCTGGAAATGCATTACATCACTCT 59.114 41.667 13.39 0.00 38.34 3.24
1969 3076 6.543465 CCTGGAAATGCATTACATCACTCTAA 59.457 38.462 13.39 0.00 38.34 2.10
2129 3237 0.997932 GCATGTTGCTGAGAGAGACG 59.002 55.000 0.00 0.00 40.96 4.18
2170 3278 9.668497 GTGAAGATAGTAAAGAAAAGGGTATGT 57.332 33.333 0.00 0.00 0.00 2.29
2187 3295 6.010219 GGGTATGTATATGGGCAGTTCAAAT 58.990 40.000 0.00 0.00 0.00 2.32
2553 3674 3.496130 CCAATATTTACTCCTGCGCAGAG 59.504 47.826 38.06 30.56 0.00 3.35
2601 3722 3.693382 TACGCGATGCTGACCACGG 62.693 63.158 15.93 0.00 0.00 4.94
2707 3828 8.777865 TTAACTACTGGACTGAAGATCAAATG 57.222 34.615 0.00 0.00 0.00 2.32
2903 4024 7.068702 TCTATTCCCATGAAAATATTGCTGGT 58.931 34.615 0.00 0.00 33.32 4.00
2923 4044 2.742053 GTGCAAAAATCTAGCGAGTCCA 59.258 45.455 0.00 0.00 0.00 4.02
2926 4047 4.181578 GCAAAAATCTAGCGAGTCCAGTA 58.818 43.478 0.00 0.00 0.00 2.74
2938 4059 1.499438 AGTCCAGTATCGGGGATCTGA 59.501 52.381 0.00 0.00 35.25 3.27
3107 4230 3.120095 TGTCAACAGTACCTCGTATGTCG 60.120 47.826 0.00 0.00 41.41 4.35
3137 4260 1.565156 CGCAGGCGCTTTAAGTGTCA 61.565 55.000 12.74 0.00 31.65 3.58
3272 4395 6.295462 CCAGGGTCTTTGTTTGAATGATGATT 60.295 38.462 0.00 0.00 0.00 2.57
3292 4415 2.118228 TGCAGCGTGTTTTAGCAAAG 57.882 45.000 0.00 0.00 35.48 2.77
3353 4476 0.943359 GCAGAGATCGCTCCATTCCG 60.943 60.000 0.00 0.00 42.30 4.30
3486 4609 6.966021 TCAAAAACTACATGTGCTTCCTAAC 58.034 36.000 9.11 0.00 0.00 2.34
3489 4612 7.582667 AAAACTACATGTGCTTCCTAACTTT 57.417 32.000 9.11 0.00 0.00 2.66
3524 4647 6.385033 CCTTAATTTTTCAGGTCTTCAGCAG 58.615 40.000 0.00 0.00 0.00 4.24
3589 4718 0.178767 TTCCTGCACCTCCATCATCG 59.821 55.000 0.00 0.00 0.00 3.84
3602 4731 2.098607 CCATCATCGAGCAGTGCAAAAT 59.901 45.455 19.20 4.05 0.00 1.82
3604 4733 2.425539 TCATCGAGCAGTGCAAAATCA 58.574 42.857 19.20 0.00 0.00 2.57
3784 4913 2.295909 TGCTGCCAACAATAGAAACCAC 59.704 45.455 0.00 0.00 0.00 4.16
3803 4932 3.003689 CCACAACCAGCTTACAAACTCTG 59.996 47.826 0.00 0.00 0.00 3.35
3845 4974 1.999634 AAACCCTGCTCCAGTGCACT 62.000 55.000 15.25 15.25 38.12 4.40
3859 4988 1.273606 GTGCACTCTACTCTGCCTCAA 59.726 52.381 10.32 0.00 31.97 3.02
3880 5009 7.176690 CCTCAACAACCCACTACTTATTCAAAT 59.823 37.037 0.00 0.00 0.00 2.32
3883 5012 5.185056 ACAACCCACTACTTATTCAAATGGC 59.815 40.000 0.00 0.00 0.00 4.40
3886 5015 4.638421 CCCACTACTTATTCAAATGGCGAA 59.362 41.667 0.00 0.00 0.00 4.70
3910 5039 6.137126 AATCGTACCTTACGGTCAACAATCC 61.137 44.000 5.94 0.00 46.18 3.01
3964 5093 2.856222 CCTGCTTATGGAGTGGATTCC 58.144 52.381 0.00 0.00 37.77 3.01
4024 5153 7.706607 TCTCAGTACACAATAGCATTATGTGTC 59.293 37.037 17.15 11.13 41.95 3.67
4025 5154 7.555965 TCAGTACACAATAGCATTATGTGTCT 58.444 34.615 17.15 12.60 41.95 3.41
4027 5156 9.481340 CAGTACACAATAGCATTATGTGTCTAT 57.519 33.333 17.15 6.06 41.95 1.98
4056 5185 8.931385 TCAGAAATTATAGGCAAATTGCTTTC 57.069 30.769 18.04 16.62 44.28 2.62
4057 5186 8.752187 TCAGAAATTATAGGCAAATTGCTTTCT 58.248 29.630 18.04 18.37 44.28 2.52
4058 5187 8.814235 CAGAAATTATAGGCAAATTGCTTTCTG 58.186 33.333 27.52 27.52 44.14 3.02
4059 5188 8.534496 AGAAATTATAGGCAAATTGCTTTCTGT 58.466 29.630 21.60 11.55 44.28 3.41
4060 5189 9.801873 GAAATTATAGGCAAATTGCTTTCTGTA 57.198 29.630 18.04 6.52 44.28 2.74
4062 5191 9.971922 AATTATAGGCAAATTGCTTTCTGTATC 57.028 29.630 18.04 0.00 44.28 2.24
4063 5192 8.752005 TTATAGGCAAATTGCTTTCTGTATCT 57.248 30.769 18.04 5.47 44.28 1.98
4064 5193 5.990120 AGGCAAATTGCTTTCTGTATCTT 57.010 34.783 18.04 0.00 44.28 2.40
4065 5194 5.958955 AGGCAAATTGCTTTCTGTATCTTC 58.041 37.500 18.04 0.00 44.28 2.87
4066 5195 5.477984 AGGCAAATTGCTTTCTGTATCTTCA 59.522 36.000 18.04 0.00 44.28 3.02
4067 5196 6.015180 AGGCAAATTGCTTTCTGTATCTTCAA 60.015 34.615 18.04 0.00 44.28 2.69
4068 5197 6.815142 GGCAAATTGCTTTCTGTATCTTCAAT 59.185 34.615 18.04 0.00 44.28 2.57
4069 5198 7.009907 GGCAAATTGCTTTCTGTATCTTCAATC 59.990 37.037 18.04 0.00 44.28 2.67
4070 5199 7.009907 GCAAATTGCTTTCTGTATCTTCAATCC 59.990 37.037 11.19 0.00 40.96 3.01
4071 5200 7.707624 AATTGCTTTCTGTATCTTCAATCCA 57.292 32.000 0.00 0.00 0.00 3.41
4072 5201 7.893124 ATTGCTTTCTGTATCTTCAATCCAT 57.107 32.000 0.00 0.00 0.00 3.41
4073 5202 6.688637 TGCTTTCTGTATCTTCAATCCATG 57.311 37.500 0.00 0.00 0.00 3.66
4074 5203 5.591472 TGCTTTCTGTATCTTCAATCCATGG 59.409 40.000 4.97 4.97 0.00 3.66
4075 5204 5.824624 GCTTTCTGTATCTTCAATCCATGGA 59.175 40.000 18.88 18.88 0.00 3.41
4076 5205 6.489361 GCTTTCTGTATCTTCAATCCATGGAT 59.511 38.462 22.15 22.15 36.23 3.41
4077 5206 7.014038 GCTTTCTGTATCTTCAATCCATGGATT 59.986 37.037 30.64 30.64 44.73 3.01
4078 5207 9.565090 CTTTCTGTATCTTCAATCCATGGATTA 57.435 33.333 34.23 21.95 42.30 1.75
4098 5227 9.528489 TGGATTATATATTTTTGAAGTAGGGCC 57.472 33.333 0.00 0.00 0.00 5.80
4099 5228 9.755122 GGATTATATATTTTTGAAGTAGGGCCT 57.245 33.333 12.58 12.58 0.00 5.19
4109 5238 6.709018 TTGAAGTAGGGCCTATAAAAATGC 57.291 37.500 17.90 0.62 0.00 3.56
4110 5239 5.761205 TGAAGTAGGGCCTATAAAAATGCA 58.239 37.500 17.90 0.00 0.00 3.96
4111 5240 5.592688 TGAAGTAGGGCCTATAAAAATGCAC 59.407 40.000 17.90 1.70 0.00 4.57
4112 5241 5.388599 AGTAGGGCCTATAAAAATGCACT 57.611 39.130 17.90 4.36 41.18 4.40
4113 5242 6.509523 AGTAGGGCCTATAAAAATGCACTA 57.490 37.500 17.90 0.00 38.64 2.74
4115 5244 5.388599 AGGGCCTATAAAAATGCACTACT 57.611 39.130 2.82 0.00 35.26 2.57
4116 5245 6.509523 AGGGCCTATAAAAATGCACTACTA 57.490 37.500 2.82 0.00 35.26 1.82
4117 5246 6.534634 AGGGCCTATAAAAATGCACTACTAG 58.465 40.000 2.82 0.00 35.26 2.57
4118 5247 5.705905 GGGCCTATAAAAATGCACTACTAGG 59.294 44.000 0.84 0.00 0.00 3.02
4119 5248 5.181433 GGCCTATAAAAATGCACTACTAGGC 59.819 44.000 18.52 18.52 45.90 3.93
4120 5249 5.107065 GCCTATAAAAATGCACTACTAGGCG 60.107 44.000 14.39 0.00 40.24 5.52
4121 5250 5.989777 CCTATAAAAATGCACTACTAGGCGT 59.010 40.000 0.00 0.00 0.00 5.68
4122 5251 5.734855 ATAAAAATGCACTACTAGGCGTG 57.265 39.130 8.76 8.76 0.00 5.34
4123 5252 3.328382 AAAATGCACTACTAGGCGTGA 57.672 42.857 15.33 4.02 33.04 4.35
4124 5253 3.328382 AAATGCACTACTAGGCGTGAA 57.672 42.857 15.33 7.22 33.04 3.18
4125 5254 3.328382 AATGCACTACTAGGCGTGAAA 57.672 42.857 15.33 5.33 33.04 2.69
4126 5255 2.074547 TGCACTACTAGGCGTGAAAC 57.925 50.000 15.33 1.85 33.04 2.78
4127 5256 1.341852 TGCACTACTAGGCGTGAAACA 59.658 47.619 15.33 3.98 35.74 2.83
4128 5257 2.028476 TGCACTACTAGGCGTGAAACAT 60.028 45.455 15.33 0.00 35.74 2.71
4129 5258 3.000727 GCACTACTAGGCGTGAAACATT 58.999 45.455 15.33 0.00 35.74 2.71
4130 5259 3.062234 GCACTACTAGGCGTGAAACATTC 59.938 47.826 15.33 0.00 35.74 2.67
4131 5260 4.495422 CACTACTAGGCGTGAAACATTCT 58.505 43.478 7.65 0.00 35.74 2.40
4132 5261 4.563184 CACTACTAGGCGTGAAACATTCTC 59.437 45.833 7.65 0.00 35.74 2.87
4133 5262 3.678056 ACTAGGCGTGAAACATTCTCA 57.322 42.857 0.00 0.00 35.74 3.27
4134 5263 3.326747 ACTAGGCGTGAAACATTCTCAC 58.673 45.455 0.00 0.00 39.89 3.51
4140 5269 3.878086 GTGAAACATTCTCACGCTGAA 57.122 42.857 0.00 0.00 34.32 3.02
4141 5270 3.545633 GTGAAACATTCTCACGCTGAAC 58.454 45.455 0.00 0.00 34.32 3.18
4142 5271 3.002246 GTGAAACATTCTCACGCTGAACA 59.998 43.478 0.00 0.00 34.32 3.18
4143 5272 3.814842 TGAAACATTCTCACGCTGAACAT 59.185 39.130 0.00 0.00 0.00 2.71
4144 5273 3.818961 AACATTCTCACGCTGAACATG 57.181 42.857 0.00 0.00 0.00 3.21
4145 5274 3.044235 ACATTCTCACGCTGAACATGA 57.956 42.857 0.00 0.00 0.00 3.07
4151 5280 0.581529 CACGCTGAACATGAACGTGT 59.418 50.000 16.51 0.00 46.56 4.49
4159 5288 0.934496 ACATGAACGTGTGGTTGTCG 59.066 50.000 0.00 0.00 39.50 4.35
4162 5291 0.173935 TGAACGTGTGGTTGTCGTCT 59.826 50.000 0.00 0.00 39.50 4.18
4165 5294 0.108520 ACGTGTGGTTGTCGTCTTGT 60.109 50.000 0.00 0.00 32.26 3.16
4166 5295 1.003851 CGTGTGGTTGTCGTCTTGTT 58.996 50.000 0.00 0.00 0.00 2.83
4176 5305 5.333111 GGTTGTCGTCTTGTTGATGTAGTTC 60.333 44.000 0.00 0.00 33.55 3.01
4177 5306 3.978855 TGTCGTCTTGTTGATGTAGTTCG 59.021 43.478 0.00 0.00 33.55 3.95
4182 5311 5.004440 CGTCTTGTTGATGTAGTTCGGTATG 59.996 44.000 0.00 0.00 0.00 2.39
4184 5313 7.031372 GTCTTGTTGATGTAGTTCGGTATGTA 58.969 38.462 0.00 0.00 0.00 2.29
4185 5314 7.543172 GTCTTGTTGATGTAGTTCGGTATGTAA 59.457 37.037 0.00 0.00 0.00 2.41
4186 5315 8.255206 TCTTGTTGATGTAGTTCGGTATGTAAT 58.745 33.333 0.00 0.00 0.00 1.89
4187 5316 8.780846 TTGTTGATGTAGTTCGGTATGTAATT 57.219 30.769 0.00 0.00 0.00 1.40
4188 5317 9.872721 TTGTTGATGTAGTTCGGTATGTAATTA 57.127 29.630 0.00 0.00 0.00 1.40
4189 5318 9.524106 TGTTGATGTAGTTCGGTATGTAATTAG 57.476 33.333 0.00 0.00 0.00 1.73
4190 5319 9.740239 GTTGATGTAGTTCGGTATGTAATTAGA 57.260 33.333 0.00 0.00 0.00 2.10
4225 5354 7.916077 ACTACACTACTAGGGCTAATTCATT 57.084 36.000 0.00 0.00 0.00 2.57
4226 5355 7.727181 ACTACACTACTAGGGCTAATTCATTG 58.273 38.462 0.00 0.00 0.00 2.82
4227 5356 6.561519 ACACTACTAGGGCTAATTCATTGT 57.438 37.500 0.00 0.00 0.00 2.71
4229 5358 8.086143 ACACTACTAGGGCTAATTCATTGTTA 57.914 34.615 0.00 0.00 0.00 2.41
4230 5359 8.545472 ACACTACTAGGGCTAATTCATTGTTAA 58.455 33.333 0.00 0.00 0.00 2.01
4231 5360 8.827677 CACTACTAGGGCTAATTCATTGTTAAC 58.172 37.037 0.00 0.00 0.00 2.01
4232 5361 7.991460 ACTACTAGGGCTAATTCATTGTTAACC 59.009 37.037 2.48 0.00 0.00 2.85
4233 5362 6.727394 ACTAGGGCTAATTCATTGTTAACCA 58.273 36.000 2.48 0.00 0.00 3.67
4234 5363 5.914898 AGGGCTAATTCATTGTTAACCAC 57.085 39.130 2.48 0.00 0.00 4.16
4235 5364 4.709886 AGGGCTAATTCATTGTTAACCACC 59.290 41.667 2.48 0.00 0.00 4.61
4260 5395 2.035066 GTCCAGAAAGCATGTGCACTTT 59.965 45.455 19.41 9.99 45.16 2.66
4261 5396 2.694628 TCCAGAAAGCATGTGCACTTTT 59.305 40.909 19.41 12.74 45.16 2.27
4262 5397 3.132646 TCCAGAAAGCATGTGCACTTTTT 59.867 39.130 19.41 10.01 45.16 1.94
4303 5438 3.948851 CTCCATGAGCATTTGACATTCG 58.051 45.455 0.00 0.00 0.00 3.34
4347 5482 0.322008 GAACAGAGGCCTTCCACCAG 60.322 60.000 6.77 0.00 33.74 4.00
4561 5756 4.841441 GGGCATGAACTCCCAACA 57.159 55.556 0.00 0.00 42.18 3.33
5005 6264 4.743644 GCACGGATACATACTGGAAAGTAC 59.256 45.833 0.00 0.00 0.00 2.73
5216 7519 6.752351 GCTCTCACATCGACTGTTTTAAGATA 59.248 38.462 0.00 0.00 35.29 1.98
5217 7520 7.253817 GCTCTCACATCGACTGTTTTAAGATAC 60.254 40.741 0.00 0.00 35.29 2.24
5218 7521 7.827701 TCTCACATCGACTGTTTTAAGATACT 58.172 34.615 0.00 0.00 35.29 2.12
5301 7607 5.136816 TGTACAAGTATCCAAGCACGTAA 57.863 39.130 0.00 0.00 0.00 3.18
5302 7608 5.539979 TGTACAAGTATCCAAGCACGTAAA 58.460 37.500 0.00 0.00 0.00 2.01
5350 7656 6.257411 TCAATTAACTAAACCACGTCGAAACA 59.743 34.615 0.00 0.00 0.00 2.83
5377 7683 6.237901 ACACATGGCTCACAAATCTAAACTA 58.762 36.000 0.00 0.00 0.00 2.24
5452 7766 5.473846 TGCCATTGAAACGTCATTAGGTAAA 59.526 36.000 0.00 0.00 32.48 2.01
5482 7799 9.825972 CAAGTACCTACAGTGTTGATTATTTTG 57.174 33.333 0.00 1.51 0.00 2.44
5486 7803 6.708949 ACCTACAGTGTTGATTATTTTGACGT 59.291 34.615 0.00 0.00 0.00 4.34
5524 7841 3.554259 CAGTACGAGCTACTGTCAACA 57.446 47.619 6.92 0.00 45.30 3.33
5548 7865 1.865340 GGAATTACGCGTTGAGGATCC 59.135 52.381 20.78 13.33 0.00 3.36
5706 8023 1.750778 GGGCAACAATGACGGAATGAT 59.249 47.619 0.00 0.00 34.32 2.45
5707 8024 2.223572 GGGCAACAATGACGGAATGATC 60.224 50.000 0.00 0.00 34.32 2.92
5708 8025 2.423185 GGCAACAATGACGGAATGATCA 59.577 45.455 0.00 0.00 0.00 2.92
5857 8174 5.103000 GTGCTCGAGTAATAGTGTTGATGT 58.897 41.667 15.13 0.00 0.00 3.06
5858 8175 5.577164 GTGCTCGAGTAATAGTGTTGATGTT 59.423 40.000 15.13 0.00 0.00 2.71
5966 8286 9.398538 ACGTAGTAAGAGATTGAACTCTATTCT 57.601 33.333 0.00 0.00 45.08 2.40
6036 8357 8.474025 TGTTTGGTTGAAGACTTGAATTGTTAT 58.526 29.630 0.00 0.00 0.00 1.89
6140 8476 3.635373 CCCGTCATACTTGCTACCTCTTA 59.365 47.826 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.386049 GCATACGTAATCAGATGGCAGTAC 59.614 45.833 0.00 0.00 0.00 2.73
60 61 5.291128 CCAGCTCGGTAATACAAAGTACTTG 59.709 44.000 9.34 6.22 41.19 3.16
92 93 1.303724 CCGCACCCCATTTGGTACA 60.304 57.895 0.00 0.00 36.67 2.90
160 161 3.025262 GGAGGGAGTAGAATTGAGACGT 58.975 50.000 0.00 0.00 0.00 4.34
168 169 3.614568 ATGGTACGGAGGGAGTAGAAT 57.385 47.619 0.00 0.00 0.00 2.40
176 177 4.617530 CGACATACATTATGGTACGGAGGG 60.618 50.000 0.00 0.00 40.47 4.30
177 178 4.482386 CGACATACATTATGGTACGGAGG 58.518 47.826 0.00 0.00 40.47 4.30
178 179 3.918591 GCGACATACATTATGGTACGGAG 59.081 47.826 0.00 0.00 40.47 4.63
179 180 3.570975 AGCGACATACATTATGGTACGGA 59.429 43.478 0.00 0.00 40.47 4.69
180 181 3.909430 AGCGACATACATTATGGTACGG 58.091 45.455 0.00 0.00 40.47 4.02
181 182 5.900339 AAAGCGACATACATTATGGTACG 57.100 39.130 0.00 0.00 40.47 3.67
182 183 6.422701 TGCTAAAGCGACATACATTATGGTAC 59.577 38.462 0.00 0.00 45.83 3.34
183 184 6.517605 TGCTAAAGCGACATACATTATGGTA 58.482 36.000 0.00 0.00 45.83 3.25
184 185 5.364778 TGCTAAAGCGACATACATTATGGT 58.635 37.500 0.00 0.00 45.83 3.55
185 186 5.466728 ACTGCTAAAGCGACATACATTATGG 59.533 40.000 0.00 0.00 45.83 2.74
186 187 6.530913 ACTGCTAAAGCGACATACATTATG 57.469 37.500 0.00 0.00 45.83 1.90
187 188 6.761242 TGAACTGCTAAAGCGACATACATTAT 59.239 34.615 0.00 0.00 45.83 1.28
188 189 6.103330 TGAACTGCTAAAGCGACATACATTA 58.897 36.000 0.00 0.00 45.83 1.90
189 190 4.935205 TGAACTGCTAAAGCGACATACATT 59.065 37.500 0.00 0.00 45.83 2.71
190 191 4.503910 TGAACTGCTAAAGCGACATACAT 58.496 39.130 0.00 0.00 45.83 2.29
191 192 3.920446 TGAACTGCTAAAGCGACATACA 58.080 40.909 0.00 0.00 45.83 2.29
192 193 4.921470 TTGAACTGCTAAAGCGACATAC 57.079 40.909 0.00 0.00 45.83 2.39
193 194 6.494893 AAATTGAACTGCTAAAGCGACATA 57.505 33.333 0.00 0.00 45.83 2.29
194 195 5.376854 AAATTGAACTGCTAAAGCGACAT 57.623 34.783 0.00 0.00 45.83 3.06
195 196 4.829064 AAATTGAACTGCTAAAGCGACA 57.171 36.364 0.00 0.00 45.83 4.35
196 197 6.856426 AGTTTAAATTGAACTGCTAAAGCGAC 59.144 34.615 2.22 0.00 45.83 5.19
197 198 6.855914 CAGTTTAAATTGAACTGCTAAAGCGA 59.144 34.615 15.89 0.00 45.02 4.93
198 199 7.026568 CAGTTTAAATTGAACTGCTAAAGCG 57.973 36.000 15.89 0.00 45.02 4.68
207 208 8.185505 TGTCGTTTTAGCAGTTTAAATTGAACT 58.814 29.630 14.30 5.66 37.82 3.01
208 209 8.330302 TGTCGTTTTAGCAGTTTAAATTGAAC 57.670 30.769 14.30 8.43 0.00 3.18
218 219 9.555727 ACCATAATATATGTCGTTTTAGCAGTT 57.444 29.630 0.00 0.00 0.00 3.16
221 222 9.984190 TGTACCATAATATATGTCGTTTTAGCA 57.016 29.630 0.00 0.00 0.00 3.49
225 226 9.706691 CCTCTGTACCATAATATATGTCGTTTT 57.293 33.333 0.00 0.00 0.00 2.43
226 227 8.311836 CCCTCTGTACCATAATATATGTCGTTT 58.688 37.037 0.00 0.00 0.00 3.60
227 228 7.672660 TCCCTCTGTACCATAATATATGTCGTT 59.327 37.037 0.00 0.00 0.00 3.85
228 229 7.179966 TCCCTCTGTACCATAATATATGTCGT 58.820 38.462 0.00 0.00 0.00 4.34
229 230 7.339721 ACTCCCTCTGTACCATAATATATGTCG 59.660 40.741 0.00 0.00 0.00 4.35
230 231 8.596781 ACTCCCTCTGTACCATAATATATGTC 57.403 38.462 0.00 0.00 0.00 3.06
231 232 9.476928 GTACTCCCTCTGTACCATAATATATGT 57.523 37.037 0.00 0.00 35.52 2.29
232 233 9.702253 AGTACTCCCTCTGTACCATAATATATG 57.298 37.037 0.00 0.00 40.61 1.78
235 236 8.337739 CCTAGTACTCCCTCTGTACCATAATAT 58.662 40.741 0.00 0.00 40.61 1.28
236 237 7.696981 CCTAGTACTCCCTCTGTACCATAATA 58.303 42.308 0.00 0.00 40.61 0.98
237 238 6.553857 CCTAGTACTCCCTCTGTACCATAAT 58.446 44.000 0.00 0.00 40.61 1.28
238 239 5.692242 GCCTAGTACTCCCTCTGTACCATAA 60.692 48.000 0.00 0.00 40.61 1.90
239 240 4.202545 GCCTAGTACTCCCTCTGTACCATA 60.203 50.000 0.00 0.00 40.61 2.74
240 241 3.436761 GCCTAGTACTCCCTCTGTACCAT 60.437 52.174 0.00 0.00 40.61 3.55
241 242 2.091994 GCCTAGTACTCCCTCTGTACCA 60.092 54.545 0.00 0.00 40.61 3.25
242 243 2.091994 TGCCTAGTACTCCCTCTGTACC 60.092 54.545 0.00 0.00 40.61 3.34
243 244 3.294038 TGCCTAGTACTCCCTCTGTAC 57.706 52.381 0.00 0.00 40.19 2.90
244 245 4.215908 CATTGCCTAGTACTCCCTCTGTA 58.784 47.826 0.00 0.00 0.00 2.74
245 246 2.921834 TTGCCTAGTACTCCCTCTGT 57.078 50.000 0.00 0.00 0.00 3.41
246 247 2.366916 CCATTGCCTAGTACTCCCTCTG 59.633 54.545 0.00 0.00 0.00 3.35
247 248 2.022918 ACCATTGCCTAGTACTCCCTCT 60.023 50.000 0.00 0.00 0.00 3.69
248 249 2.399580 ACCATTGCCTAGTACTCCCTC 58.600 52.381 0.00 0.00 0.00 4.30
249 250 2.570386 ACCATTGCCTAGTACTCCCT 57.430 50.000 0.00 0.00 0.00 4.20
250 251 3.453353 TGTAACCATTGCCTAGTACTCCC 59.547 47.826 0.00 0.00 0.00 4.30
251 252 4.081309 TGTGTAACCATTGCCTAGTACTCC 60.081 45.833 0.00 0.00 34.36 3.85
252 253 5.080969 TGTGTAACCATTGCCTAGTACTC 57.919 43.478 0.00 0.00 34.36 2.59
253 254 5.492855 TTGTGTAACCATTGCCTAGTACT 57.507 39.130 0.00 0.00 34.36 2.73
254 255 6.598064 AGAATTGTGTAACCATTGCCTAGTAC 59.402 38.462 0.00 0.00 31.63 2.73
255 256 6.717289 AGAATTGTGTAACCATTGCCTAGTA 58.283 36.000 0.00 0.00 31.63 1.82
277 278 9.878667 TCCGTGAATTGTACAGATAAATTAAGA 57.121 29.630 0.00 0.00 0.00 2.10
279 280 9.661563 ACTCCGTGAATTGTACAGATAAATTAA 57.338 29.630 0.00 0.00 0.00 1.40
290 291 7.696453 CCAAATATTTGACTCCGTGAATTGTAC 59.304 37.037 26.32 0.00 40.55 2.90
300 301 1.400142 TGCGCCAAATATTTGACTCCG 59.600 47.619 26.32 21.28 40.55 4.63
303 304 3.189285 GCAATGCGCCAAATATTTGACT 58.811 40.909 26.32 0.00 40.55 3.41
348 349 7.417570 CCCATAGAAACTACTCCGTCAACTAAT 60.418 40.741 0.00 0.00 0.00 1.73
357 358 3.491104 GCTGTCCCATAGAAACTACTCCG 60.491 52.174 0.00 0.00 0.00 4.63
421 624 3.250040 AGACACTTTGTTGGAACGTATGC 59.750 43.478 0.00 0.00 0.00 3.14
428 631 2.722094 ACAGCAGACACTTTGTTGGAA 58.278 42.857 0.00 0.00 31.92 3.53
439 642 1.228769 ACCCGACCTACAGCAGACA 60.229 57.895 0.00 0.00 0.00 3.41
445 648 1.890894 CACCTGACCCGACCTACAG 59.109 63.158 0.00 0.00 0.00 2.74
446 649 2.280552 GCACCTGACCCGACCTACA 61.281 63.158 0.00 0.00 0.00 2.74
447 650 2.577593 GCACCTGACCCGACCTAC 59.422 66.667 0.00 0.00 0.00 3.18
448 651 3.066190 CGCACCTGACCCGACCTA 61.066 66.667 0.00 0.00 0.00 3.08
454 657 2.311688 CTATGGGACGCACCTGACCC 62.312 65.000 0.00 0.00 42.37 4.46
462 665 1.479323 GTGGTAGTTCTATGGGACGCA 59.521 52.381 0.00 0.00 0.00 5.24
486 689 2.777114 TGGGACACATATGTATGCCTGT 59.223 45.455 23.18 9.81 39.95 4.00
509 712 9.413048 GTGACAAAGTATATATAGCTGAAGTCC 57.587 37.037 0.00 0.00 0.00 3.85
586 1199 9.567848 GAAAAAGGAAAATCGCACTTATTGATA 57.432 29.630 0.00 0.00 0.00 2.15
778 1409 3.748048 CGGCCATGACTAGGACAAATATG 59.252 47.826 2.24 0.00 31.91 1.78
882 1517 7.506114 TGGAGTATGTTTGTTATGTCCTATCC 58.494 38.462 0.00 0.00 0.00 2.59
952 1587 1.665679 ACAAACGGTCATCGATGCATC 59.334 47.619 20.81 17.10 42.43 3.91
982 1617 3.326588 ACCCAGCTACATGTAGTCACAAA 59.673 43.478 28.95 0.00 38.42 2.83
1046 1685 1.841556 AGGAACGTGGAGCCAAGGA 60.842 57.895 7.35 0.00 0.00 3.36
1087 1726 1.374947 CTTTCCTGCCTCGGTTCCA 59.625 57.895 0.00 0.00 0.00 3.53
1102 1741 3.321968 GCCACAAGAATTTGTCCTCCTTT 59.678 43.478 0.00 0.00 45.53 3.11
1103 1742 2.893489 GCCACAAGAATTTGTCCTCCTT 59.107 45.455 0.00 0.00 45.53 3.36
1104 1743 2.519013 GCCACAAGAATTTGTCCTCCT 58.481 47.619 0.00 0.00 45.53 3.69
1108 1778 1.000843 GGTGGCCACAAGAATTTGTCC 59.999 52.381 35.78 11.58 45.53 4.02
1146 1816 3.971032 ACAAGAAAGCTTCACCGAAAG 57.029 42.857 0.00 0.00 30.14 2.62
1152 1822 2.866156 GCCCAAAACAAGAAAGCTTCAC 59.134 45.455 0.00 0.00 30.14 3.18
1188 1858 1.001641 AGCCAGCAACAGATGGTCC 60.002 57.895 1.49 0.00 40.89 4.46
1190 1860 1.975407 GCAGCCAGCAACAGATGGT 60.975 57.895 1.49 0.00 40.89 3.55
1208 1878 3.428180 CGATAGGGAGCGATATCAACCAG 60.428 52.174 3.12 0.00 36.26 4.00
1210 1880 2.492484 ACGATAGGGAGCGATATCAACC 59.508 50.000 3.12 2.71 38.04 3.77
1212 1882 3.945921 CCTACGATAGGGAGCGATATCAA 59.054 47.826 3.12 0.00 42.42 2.57
1213 1883 3.542648 CCTACGATAGGGAGCGATATCA 58.457 50.000 3.12 0.00 42.42 2.15
1224 1894 4.052229 CCGCGCCCCTACGATAGG 62.052 72.222 0.00 0.00 45.81 2.57
1225 1895 2.979197 CTCCGCGCCCCTACGATAG 61.979 68.421 0.00 0.00 46.19 2.08
1257 1927 2.273179 CGTTGGACGGAGGAGGACA 61.273 63.158 0.00 0.00 38.08 4.02
1315 1988 0.452184 TGTCGCAGATCTCGAGGTTC 59.548 55.000 13.56 10.20 40.67 3.62
1361 2034 1.079197 AGATGGCAATCGTCGTGCA 60.079 52.632 9.68 0.00 44.07 4.57
1441 2121 2.084546 ACCAGATTAAGCCGCAGAAAC 58.915 47.619 0.00 0.00 0.00 2.78
1457 2137 1.024579 AACCATAGGCGCGAAACCAG 61.025 55.000 12.10 0.00 0.00 4.00
1481 2162 3.119708 AGCTCGCAAAGATTTAAGCCTTG 60.120 43.478 0.00 0.00 0.00 3.61
1509 2190 3.476552 TGAGCTGACCAAAAGGTACAAG 58.523 45.455 0.00 0.00 0.00 3.16
1527 2212 2.301346 ACTTGGTGGTTCTTTGCTGAG 58.699 47.619 0.00 0.00 0.00 3.35
1540 2225 6.072112 ACAGCATAACAAAAGTACTTGGTG 57.928 37.500 9.34 13.23 37.20 4.17
1550 2636 9.029243 CAACAAACTGATAACAGCATAACAAAA 57.971 29.630 0.00 0.00 46.95 2.44
1581 2667 7.755822 GCCTAGGAATATAACAGTACGAAGATG 59.244 40.741 14.75 0.00 0.00 2.90
1697 2783 6.966435 CACCAAAGTGTTCAGTTTCAAATT 57.034 33.333 3.05 0.00 39.30 1.82
1736 2822 6.428159 GGCATAGACCACAGAATAATAGTTGG 59.572 42.308 0.00 0.00 0.00 3.77
1746 2832 1.557099 AGTCGGCATAGACCACAGAA 58.443 50.000 0.00 0.00 41.83 3.02
1796 2882 2.572290 AGTGCAAAGGTACAGGTCAAC 58.428 47.619 0.00 0.00 31.27 3.18
1851 2958 3.482156 ACAGTCAGAACACAGCTCATT 57.518 42.857 0.00 0.00 0.00 2.57
1930 3037 5.065218 GCATTTCCAGGTTACTACATCACTG 59.935 44.000 0.00 0.00 0.00 3.66
1949 3056 8.579850 TCCTTTTAGAGTGATGTAATGCATTT 57.420 30.769 18.75 0.00 38.06 2.32
1967 3074 6.855763 AATGTGCCAATCATCTTCCTTTTA 57.144 33.333 0.00 0.00 0.00 1.52
1969 3076 5.750352 AAATGTGCCAATCATCTTCCTTT 57.250 34.783 0.00 0.00 0.00 3.11
2062 3170 7.615582 TTTAATCATTGTCTCCAGCAACTAG 57.384 36.000 0.00 0.00 0.00 2.57
2129 3237 6.812160 ACTATCTTCACCATTTCACGAAGTAC 59.188 38.462 0.00 0.00 41.61 2.73
2171 3279 9.816354 GTACATAAAAATTTGAACTGCCCATAT 57.184 29.630 0.00 0.00 0.00 1.78
2213 3321 7.753132 CACCACACACATACATACATTAAAACC 59.247 37.037 0.00 0.00 0.00 3.27
2226 3334 4.277423 AGGCTAAAAACACCACACACATAC 59.723 41.667 0.00 0.00 0.00 2.39
2553 3674 5.346181 AGGATAGTTTTGTAGAGGCTGAC 57.654 43.478 0.00 0.00 0.00 3.51
2601 3722 4.844420 CTGACGATTCAGGAGCCC 57.156 61.111 0.00 0.00 45.06 5.19
2675 3796 5.483685 TCAGTCCAGTAGTTAAGCATGTT 57.516 39.130 0.00 0.00 0.00 2.71
2676 3797 5.246203 TCTTCAGTCCAGTAGTTAAGCATGT 59.754 40.000 0.00 0.00 0.00 3.21
2903 4024 3.002791 CTGGACTCGCTAGATTTTTGCA 58.997 45.455 0.00 0.00 0.00 4.08
2923 4044 3.780850 AGGTTTTTCAGATCCCCGATACT 59.219 43.478 0.00 0.00 0.00 2.12
2926 4047 2.846827 AGAGGTTTTTCAGATCCCCGAT 59.153 45.455 0.00 0.00 0.00 4.18
3272 4395 2.458951 CTTTGCTAAAACACGCTGCAA 58.541 42.857 0.00 0.00 41.10 4.08
3292 4415 4.575245 GCGGCAATAGCGTCGTGC 62.575 66.667 0.00 0.00 43.41 5.34
3310 4433 4.171103 ACCGGAACCGCTATGCCC 62.171 66.667 9.46 0.00 38.24 5.36
3373 4496 2.287427 CCTCTGCACTGCTTCTTTTGTG 60.287 50.000 1.98 0.00 0.00 3.33
3459 4582 6.006449 AGGAAGCACATGTAGTTTTTGAGAT 58.994 36.000 0.00 0.00 0.00 2.75
3493 4616 8.950007 AAGACCTGAAAAATTAAGGGAATGTA 57.050 30.769 0.00 0.00 35.24 2.29
3494 4617 7.508977 TGAAGACCTGAAAAATTAAGGGAATGT 59.491 33.333 0.00 0.00 35.24 2.71
3496 4619 7.310052 GCTGAAGACCTGAAAAATTAAGGGAAT 60.310 37.037 0.00 0.00 35.24 3.01
3498 4621 5.476945 GCTGAAGACCTGAAAAATTAAGGGA 59.523 40.000 0.00 0.00 35.24 4.20
3499 4622 5.243730 TGCTGAAGACCTGAAAAATTAAGGG 59.756 40.000 0.00 0.00 35.24 3.95
3501 4624 5.860716 GCTGCTGAAGACCTGAAAAATTAAG 59.139 40.000 0.00 0.00 0.00 1.85
3503 4626 5.072741 AGCTGCTGAAGACCTGAAAAATTA 58.927 37.500 0.00 0.00 0.00 1.40
3524 4647 2.413371 GCTTGCTTGCACTTGTAGTAGC 60.413 50.000 0.00 0.00 0.00 3.58
3589 4718 3.360249 ACAACTGATTTTGCACTGCTC 57.640 42.857 1.98 0.00 0.00 4.26
3602 4731 1.727511 GCTGGTGCTGCAACAACTGA 61.728 55.000 22.12 0.00 36.03 3.41
3604 4733 3.122850 GCTGGTGCTGCAACAACT 58.877 55.556 22.12 0.00 36.03 3.16
3784 4913 4.900635 AACAGAGTTTGTAAGCTGGTTG 57.099 40.909 1.72 0.00 39.73 3.77
3803 4932 3.134458 CTCGAGATGCAGGGGAAATAAC 58.866 50.000 6.58 0.00 0.00 1.89
3845 4974 1.623811 GGGTTGTTGAGGCAGAGTAGA 59.376 52.381 0.00 0.00 0.00 2.59
3859 4988 5.185056 GCCATTTGAATAAGTAGTGGGTTGT 59.815 40.000 0.00 0.00 0.00 3.32
3910 5039 1.101049 ACCTTGTGGCGTTCAGTTGG 61.101 55.000 0.00 0.00 36.63 3.77
3964 5093 2.723124 AATTTAGTGCTTGCCGTTGG 57.277 45.000 0.00 0.00 0.00 3.77
4030 5159 9.538508 GAAAGCAATTTGCCTATAATTTCTGAT 57.461 29.630 17.51 0.00 46.52 2.90
4031 5160 8.752187 AGAAAGCAATTTGCCTATAATTTCTGA 58.248 29.630 22.70 0.00 46.52 3.27
4032 5161 8.814235 CAGAAAGCAATTTGCCTATAATTTCTG 58.186 33.333 28.15 28.15 46.52 3.02
4033 5162 8.534496 ACAGAAAGCAATTTGCCTATAATTTCT 58.466 29.630 19.91 19.91 46.52 2.52
4034 5163 8.707938 ACAGAAAGCAATTTGCCTATAATTTC 57.292 30.769 17.51 17.33 46.52 2.17
4036 5165 9.971922 GATACAGAAAGCAATTTGCCTATAATT 57.028 29.630 17.51 1.80 46.52 1.40
4037 5166 9.359653 AGATACAGAAAGCAATTTGCCTATAAT 57.640 29.630 17.51 3.78 46.52 1.28
4038 5167 8.752005 AGATACAGAAAGCAATTTGCCTATAA 57.248 30.769 17.51 0.00 46.52 0.98
4039 5168 8.752005 AAGATACAGAAAGCAATTTGCCTATA 57.248 30.769 17.51 2.54 46.52 1.31
4040 5169 7.340232 TGAAGATACAGAAAGCAATTTGCCTAT 59.660 33.333 17.51 4.42 46.52 2.57
4041 5170 6.658816 TGAAGATACAGAAAGCAATTTGCCTA 59.341 34.615 17.51 0.00 46.52 3.93
4042 5171 5.477984 TGAAGATACAGAAAGCAATTTGCCT 59.522 36.000 17.51 1.76 46.52 4.75
4043 5172 5.713025 TGAAGATACAGAAAGCAATTTGCC 58.287 37.500 17.51 3.02 46.52 4.52
4044 5173 7.009907 GGATTGAAGATACAGAAAGCAATTTGC 59.990 37.037 13.55 13.55 45.46 3.68
4045 5174 8.030692 TGGATTGAAGATACAGAAAGCAATTTG 58.969 33.333 0.00 0.00 0.00 2.32
4046 5175 8.125978 TGGATTGAAGATACAGAAAGCAATTT 57.874 30.769 0.00 0.00 0.00 1.82
4047 5176 7.707624 TGGATTGAAGATACAGAAAGCAATT 57.292 32.000 0.00 0.00 0.00 2.32
4048 5177 7.201884 CCATGGATTGAAGATACAGAAAGCAAT 60.202 37.037 5.56 0.00 0.00 3.56
4049 5178 6.095860 CCATGGATTGAAGATACAGAAAGCAA 59.904 38.462 5.56 0.00 0.00 3.91
4050 5179 5.591472 CCATGGATTGAAGATACAGAAAGCA 59.409 40.000 5.56 0.00 0.00 3.91
4051 5180 5.824624 TCCATGGATTGAAGATACAGAAAGC 59.175 40.000 11.44 0.00 0.00 3.51
4052 5181 8.461249 AATCCATGGATTGAAGATACAGAAAG 57.539 34.615 34.28 0.00 42.55 2.62
4072 5201 9.528489 GGCCCTACTTCAAAAATATATAATCCA 57.472 33.333 0.00 0.00 0.00 3.41
4073 5202 9.755122 AGGCCCTACTTCAAAAATATATAATCC 57.245 33.333 0.00 0.00 0.00 3.01
4083 5212 8.038351 GCATTTTTATAGGCCCTACTTCAAAAA 58.962 33.333 0.00 12.67 31.98 1.94
4084 5213 7.179338 TGCATTTTTATAGGCCCTACTTCAAAA 59.821 33.333 0.00 0.00 0.00 2.44
4085 5214 6.665680 TGCATTTTTATAGGCCCTACTTCAAA 59.334 34.615 0.00 0.00 0.00 2.69
4086 5215 6.096282 GTGCATTTTTATAGGCCCTACTTCAA 59.904 38.462 0.00 0.00 0.00 2.69
4087 5216 5.592688 GTGCATTTTTATAGGCCCTACTTCA 59.407 40.000 0.00 0.00 0.00 3.02
4088 5217 5.828328 AGTGCATTTTTATAGGCCCTACTTC 59.172 40.000 0.00 0.00 0.00 3.01
4089 5218 5.766590 AGTGCATTTTTATAGGCCCTACTT 58.233 37.500 0.00 0.00 0.00 2.24
4090 5219 5.388599 AGTGCATTTTTATAGGCCCTACT 57.611 39.130 0.00 0.00 0.00 2.57
4091 5220 6.296803 AGTAGTGCATTTTTATAGGCCCTAC 58.703 40.000 0.00 0.00 37.45 3.18
4092 5221 6.509523 AGTAGTGCATTTTTATAGGCCCTA 57.490 37.500 0.00 0.00 0.00 3.53
4093 5222 5.388599 AGTAGTGCATTTTTATAGGCCCT 57.611 39.130 0.00 0.00 0.00 5.19
4094 5223 5.705905 CCTAGTAGTGCATTTTTATAGGCCC 59.294 44.000 0.00 0.00 0.00 5.80
4095 5224 5.181433 GCCTAGTAGTGCATTTTTATAGGCC 59.819 44.000 19.08 0.00 45.33 5.19
4096 5225 5.107065 CGCCTAGTAGTGCATTTTTATAGGC 60.107 44.000 19.52 19.52 46.79 3.93
4097 5226 5.989777 ACGCCTAGTAGTGCATTTTTATAGG 59.010 40.000 10.14 0.00 33.24 2.57
4098 5227 6.700081 TCACGCCTAGTAGTGCATTTTTATAG 59.300 38.462 9.26 0.00 38.19 1.31
4099 5228 6.575267 TCACGCCTAGTAGTGCATTTTTATA 58.425 36.000 9.26 0.00 38.19 0.98
4100 5229 5.424757 TCACGCCTAGTAGTGCATTTTTAT 58.575 37.500 9.26 0.00 38.19 1.40
4101 5230 4.823157 TCACGCCTAGTAGTGCATTTTTA 58.177 39.130 9.26 0.00 38.19 1.52
4102 5231 3.670625 TCACGCCTAGTAGTGCATTTTT 58.329 40.909 9.26 0.00 38.19 1.94
4103 5232 3.328382 TCACGCCTAGTAGTGCATTTT 57.672 42.857 9.26 0.00 38.19 1.82
4104 5233 3.328382 TTCACGCCTAGTAGTGCATTT 57.672 42.857 9.26 0.00 38.19 2.32
4105 5234 3.000727 GTTTCACGCCTAGTAGTGCATT 58.999 45.455 9.26 0.00 38.19 3.56
4106 5235 2.028476 TGTTTCACGCCTAGTAGTGCAT 60.028 45.455 9.26 0.00 38.19 3.96
4107 5236 1.341852 TGTTTCACGCCTAGTAGTGCA 59.658 47.619 9.26 0.00 38.19 4.57
4108 5237 2.074547 TGTTTCACGCCTAGTAGTGC 57.925 50.000 9.26 0.00 38.19 4.40
4109 5238 4.495422 AGAATGTTTCACGCCTAGTAGTG 58.505 43.478 8.12 8.12 39.55 2.74
4110 5239 4.219944 TGAGAATGTTTCACGCCTAGTAGT 59.780 41.667 0.00 0.00 0.00 2.73
4111 5240 4.563184 GTGAGAATGTTTCACGCCTAGTAG 59.437 45.833 0.00 0.00 36.01 2.57
4112 5241 4.491676 GTGAGAATGTTTCACGCCTAGTA 58.508 43.478 0.00 0.00 36.01 1.82
4113 5242 3.326747 GTGAGAATGTTTCACGCCTAGT 58.673 45.455 0.00 0.00 36.01 2.57
4114 5243 3.999229 GTGAGAATGTTTCACGCCTAG 57.001 47.619 0.00 0.00 36.01 3.02
4120 5249 3.002246 TGTTCAGCGTGAGAATGTTTCAC 59.998 43.478 0.00 0.00 41.14 3.18
4121 5250 3.202097 TGTTCAGCGTGAGAATGTTTCA 58.798 40.909 0.00 0.00 0.00 2.69
4122 5251 3.878086 TGTTCAGCGTGAGAATGTTTC 57.122 42.857 0.00 0.00 0.00 2.78
4123 5252 3.814842 TCATGTTCAGCGTGAGAATGTTT 59.185 39.130 0.00 0.00 38.14 2.83
4124 5253 3.402110 TCATGTTCAGCGTGAGAATGTT 58.598 40.909 0.00 0.00 38.14 2.71
4125 5254 3.044235 TCATGTTCAGCGTGAGAATGT 57.956 42.857 0.00 0.00 38.14 2.71
4126 5255 3.722957 CGTTCATGTTCAGCGTGAGAATG 60.723 47.826 0.00 0.00 43.29 2.67
4127 5256 2.413112 CGTTCATGTTCAGCGTGAGAAT 59.587 45.455 0.00 0.00 43.29 2.40
4128 5257 1.792367 CGTTCATGTTCAGCGTGAGAA 59.208 47.619 0.00 0.00 43.29 2.87
4129 5258 1.269569 ACGTTCATGTTCAGCGTGAGA 60.270 47.619 0.00 0.00 43.29 3.27
4130 5259 1.139989 ACGTTCATGTTCAGCGTGAG 58.860 50.000 0.00 0.00 43.29 3.51
4131 5260 3.282557 ACGTTCATGTTCAGCGTGA 57.717 47.368 0.00 0.00 41.04 4.35
4132 5261 3.349972 CACGTTCATGTTCAGCGTG 57.650 52.632 7.64 7.64 44.88 5.34
4133 5262 0.581529 CACACGTTCATGTTCAGCGT 59.418 50.000 0.00 0.00 36.13 5.07
4134 5263 0.110688 CCACACGTTCATGTTCAGCG 60.111 55.000 0.00 0.00 0.00 5.18
4135 5264 0.944386 ACCACACGTTCATGTTCAGC 59.056 50.000 0.00 0.00 0.00 4.26
4136 5265 2.354510 ACAACCACACGTTCATGTTCAG 59.645 45.455 0.00 0.00 29.93 3.02
4137 5266 2.353269 GACAACCACACGTTCATGTTCA 59.647 45.455 0.00 0.00 29.93 3.18
4138 5267 2.598907 CGACAACCACACGTTCATGTTC 60.599 50.000 0.00 0.00 29.93 3.18
4139 5268 1.329292 CGACAACCACACGTTCATGTT 59.671 47.619 0.00 0.00 29.93 2.71
4140 5269 0.934496 CGACAACCACACGTTCATGT 59.066 50.000 0.00 0.00 29.93 3.21
4141 5270 0.934496 ACGACAACCACACGTTCATG 59.066 50.000 0.00 0.00 36.91 3.07
4142 5271 1.202486 AGACGACAACCACACGTTCAT 60.202 47.619 0.00 0.00 40.29 2.57
4143 5272 0.173935 AGACGACAACCACACGTTCA 59.826 50.000 0.00 0.00 40.29 3.18
4144 5273 1.005347 CAAGACGACAACCACACGTTC 60.005 52.381 0.00 0.00 40.29 3.95
4145 5274 1.003851 CAAGACGACAACCACACGTT 58.996 50.000 0.00 0.00 40.29 3.99
4151 5280 2.912771 ACATCAACAAGACGACAACCA 58.087 42.857 0.00 0.00 0.00 3.67
4159 5288 5.867716 ACATACCGAACTACATCAACAAGAC 59.132 40.000 0.00 0.00 0.00 3.01
4162 5291 8.780846 AATTACATACCGAACTACATCAACAA 57.219 30.769 0.00 0.00 0.00 2.83
4200 5329 8.857098 CAATGAATTAGCCCTAGTAGTGTAGTA 58.143 37.037 0.00 0.00 0.00 1.82
4210 5339 6.039382 GGTGGTTAACAATGAATTAGCCCTAG 59.961 42.308 8.10 0.00 33.26 3.02
4231 5360 0.178992 TGCTTTCTGGACCAAGGTGG 60.179 55.000 0.00 0.00 45.02 4.61
4232 5361 1.542915 CATGCTTTCTGGACCAAGGTG 59.457 52.381 0.00 0.00 0.00 4.00
4233 5362 1.145738 ACATGCTTTCTGGACCAAGGT 59.854 47.619 0.00 0.00 0.00 3.50
4234 5363 1.542915 CACATGCTTTCTGGACCAAGG 59.457 52.381 0.00 0.00 0.00 3.61
4235 5364 1.068055 GCACATGCTTTCTGGACCAAG 60.068 52.381 0.00 0.00 38.21 3.61
4241 5376 2.806608 AAAGTGCACATGCTTTCTGG 57.193 45.000 21.04 0.00 42.66 3.86
4303 5438 3.031736 TCCTCTACACCTGTGAATAGGC 58.968 50.000 3.94 0.00 41.75 3.93
4347 5482 0.899717 TGCTGAATTTCCCAGGGTGC 60.900 55.000 5.01 0.97 32.51 5.01
5005 6264 6.410942 TCATACAGGAATCATACAGTCCAG 57.589 41.667 0.00 0.00 42.25 3.86
5231 7534 5.132502 TCACTTTCTGGTCATGTTGATGTT 58.867 37.500 0.00 0.00 0.00 2.71
5350 7656 3.759581 AGATTTGTGAGCCATGTGTCTT 58.240 40.909 0.00 0.00 0.00 3.01
5452 7766 2.025636 ACACTGTAGGTACTTGGGCT 57.974 50.000 0.00 0.00 41.75 5.19
5482 7799 1.021390 CCTCCATCACCTGCAACGTC 61.021 60.000 0.00 0.00 0.00 4.34
5486 7803 1.133181 TGGTCCTCCATCACCTGCAA 61.133 55.000 0.00 0.00 39.03 4.08
5524 7841 1.663695 CTCAACGCGTAATTCCCCAT 58.336 50.000 14.46 0.00 0.00 4.00
5548 7865 2.815647 GCGTCCCTCTTTCAGCGG 60.816 66.667 0.00 0.00 0.00 5.52
5552 7869 1.209504 CCTAATGGCGTCCCTCTTTCA 59.790 52.381 0.00 0.00 0.00 2.69
5706 8023 2.299013 ACATAGCTCGTTGTTCAGGTGA 59.701 45.455 0.00 0.00 0.00 4.02
5707 8024 2.688507 ACATAGCTCGTTGTTCAGGTG 58.311 47.619 0.00 0.00 0.00 4.00
5708 8025 3.762288 TCTACATAGCTCGTTGTTCAGGT 59.238 43.478 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.