Multiple sequence alignment - TraesCS5A01G412500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G412500 chr5A 100.000 3071 0 0 1 3071 601210215 601207145 0.000000e+00 5672
1 TraesCS5A01G412500 chr5A 98.714 2177 21 4 896 3071 3991871 3994041 0.000000e+00 3858
2 TraesCS5A01G412500 chr5A 97.321 336 9 0 1 336 601215377 601215042 3.440000e-159 571
3 TraesCS5A01G412500 chr5A 97.015 335 8 1 566 900 3983127 3983459 2.070000e-156 562
4 TraesCS5A01G412500 chr2A 98.629 2480 27 5 593 3071 710248599 710251072 0.000000e+00 4385
5 TraesCS5A01G412500 chr4B 98.224 2477 35 5 596 3071 531077383 531079851 0.000000e+00 4322
6 TraesCS5A01G412500 chr7A 98.143 2477 24 7 597 3071 664221738 664219282 0.000000e+00 4300
7 TraesCS5A01G412500 chr7A 97.590 332 8 0 1 332 670890188 670889857 1.240000e-158 569
8 TraesCS5A01G412500 chr7A 96.726 336 11 0 1 336 670904134 670903799 7.440000e-156 560
9 TraesCS5A01G412500 chr7A 95.152 330 14 2 4 332 609375097 609374769 1.260000e-143 520
10 TraesCS5A01G412500 chr7A 93.994 333 18 2 5 336 609379604 609379273 1.270000e-138 503
11 TraesCS5A01G412500 chr6B 95.642 2478 94 12 597 3071 612965808 612968274 0.000000e+00 3965
12 TraesCS5A01G412500 chr6B 95.212 2193 77 7 903 3071 92572160 92574348 0.000000e+00 3443
13 TraesCS5A01G412500 chr3B 95.556 2498 74 15 602 3071 82368061 82365573 0.000000e+00 3964
14 TraesCS5A01G412500 chr3B 94.112 2191 75 10 908 3071 823328190 823330353 0.000000e+00 3282
15 TraesCS5A01G412500 chr3B 89.944 885 64 9 588 1454 76135576 76134699 0.000000e+00 1118
16 TraesCS5A01G412500 chr4A 97.512 1889 27 4 1200 3071 507909080 507910965 0.000000e+00 3210
17 TraesCS5A01G412500 chr4A 95.722 561 20 3 597 1156 507908525 507909082 0.000000e+00 900
18 TraesCS5A01G412500 chr4A 96.865 319 10 0 1 319 616795265 616795583 4.510000e-148 534
19 TraesCS5A01G412500 chr4A 96.296 324 10 1 9 332 639203222 639203543 5.830000e-147 531
20 TraesCS5A01G412500 chr4A 96.238 319 12 0 1 319 616834286 616834604 9.760000e-145 523
21 TraesCS5A01G412500 chr6A 97.300 1889 33 3 1200 3071 338113284 338115171 0.000000e+00 3190
22 TraesCS5A01G412500 chr6A 95.009 561 22 5 597 1156 338112731 338113286 0.000000e+00 876
23 TraesCS5A01G412500 chr7B 93.167 1800 82 20 597 2364 665248953 665247163 0.000000e+00 2604
24 TraesCS5A01G412500 chr3A 94.578 332 18 0 1 332 80514071 80514402 5.870000e-142 514
25 TraesCS5A01G412500 chr1D 96.759 216 7 0 333 548 24614902 24614687 8.100000e-96 361


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G412500 chr5A 601207145 601210215 3070 True 5672 5672 100.0000 1 3071 1 chr5A.!!$R1 3070
1 TraesCS5A01G412500 chr5A 3991871 3994041 2170 False 3858 3858 98.7140 896 3071 1 chr5A.!!$F2 2175
2 TraesCS5A01G412500 chr2A 710248599 710251072 2473 False 4385 4385 98.6290 593 3071 1 chr2A.!!$F1 2478
3 TraesCS5A01G412500 chr4B 531077383 531079851 2468 False 4322 4322 98.2240 596 3071 1 chr4B.!!$F1 2475
4 TraesCS5A01G412500 chr7A 664219282 664221738 2456 True 4300 4300 98.1430 597 3071 1 chr7A.!!$R3 2474
5 TraesCS5A01G412500 chr6B 612965808 612968274 2466 False 3965 3965 95.6420 597 3071 1 chr6B.!!$F2 2474
6 TraesCS5A01G412500 chr6B 92572160 92574348 2188 False 3443 3443 95.2120 903 3071 1 chr6B.!!$F1 2168
7 TraesCS5A01G412500 chr3B 82365573 82368061 2488 True 3964 3964 95.5560 602 3071 1 chr3B.!!$R2 2469
8 TraesCS5A01G412500 chr3B 823328190 823330353 2163 False 3282 3282 94.1120 908 3071 1 chr3B.!!$F1 2163
9 TraesCS5A01G412500 chr3B 76134699 76135576 877 True 1118 1118 89.9440 588 1454 1 chr3B.!!$R1 866
10 TraesCS5A01G412500 chr4A 507908525 507910965 2440 False 2055 3210 96.6170 597 3071 2 chr4A.!!$F4 2474
11 TraesCS5A01G412500 chr6A 338112731 338115171 2440 False 2033 3190 96.1545 597 3071 2 chr6A.!!$F1 2474
12 TraesCS5A01G412500 chr7B 665247163 665248953 1790 True 2604 2604 93.1670 597 2364 1 chr7B.!!$R1 1767

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
163 164 0.029371 ACCCCACCTAATCCCCTACC 60.029 60.0 0.00 0.0 0.0 3.18 F
313 314 0.035036 GCCGGAATCCTAGCCTAACC 59.965 60.0 5.05 0.0 0.0 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 1524 0.321122 GGGCCGCATGAAGAGATAGG 60.321 60.0 0.0 0.0 0.0 2.57 R
2108 2188 0.393132 GAAAAGGAGGAAGAGGCGGG 60.393 60.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.772622 CCCACCGGGCCCTTAGAT 60.773 66.667 22.43 0.00 35.35 1.98
28 29 2.819284 CCCACCGGGCCCTTAGATC 61.819 68.421 22.43 0.00 35.35 2.75
29 30 2.819284 CCACCGGGCCCTTAGATCC 61.819 68.421 22.43 0.00 0.00 3.36
30 31 2.842936 ACCGGGCCCTTAGATCCG 60.843 66.667 22.43 3.11 41.90 4.18
31 32 2.842936 CCGGGCCCTTAGATCCGT 60.843 66.667 22.43 0.00 40.78 4.69
32 33 2.421739 CGGGCCCTTAGATCCGTG 59.578 66.667 22.43 0.00 37.92 4.94
33 34 2.111251 GGGCCCTTAGATCCGTGC 59.889 66.667 17.04 0.00 0.00 5.34
34 35 2.111251 GGCCCTTAGATCCGTGCC 59.889 66.667 0.00 0.00 0.00 5.01
35 36 2.111251 GCCCTTAGATCCGTGCCC 59.889 66.667 0.00 0.00 0.00 5.36
36 37 2.444256 GCCCTTAGATCCGTGCCCT 61.444 63.158 0.00 0.00 0.00 5.19
37 38 1.447643 CCCTTAGATCCGTGCCCTG 59.552 63.158 0.00 0.00 0.00 4.45
38 39 1.048724 CCCTTAGATCCGTGCCCTGA 61.049 60.000 0.00 0.00 0.00 3.86
39 40 1.051812 CCTTAGATCCGTGCCCTGAT 58.948 55.000 0.00 0.00 0.00 2.90
40 41 1.001406 CCTTAGATCCGTGCCCTGATC 59.999 57.143 0.00 0.00 38.10 2.92
41 42 0.673985 TTAGATCCGTGCCCTGATCG 59.326 55.000 0.00 0.00 41.76 3.69
42 43 1.179174 TAGATCCGTGCCCTGATCGG 61.179 60.000 0.00 0.00 41.76 4.18
51 52 3.083349 CCTGATCGGGGGTGCTCA 61.083 66.667 13.34 0.00 0.00 4.26
52 53 2.669133 CCTGATCGGGGGTGCTCAA 61.669 63.158 13.34 0.00 0.00 3.02
53 54 1.450312 CTGATCGGGGGTGCTCAAC 60.450 63.158 0.00 0.00 0.00 3.18
62 63 3.175133 GGTGCTCAACCCACTATGG 57.825 57.895 0.00 0.00 44.02 2.74
73 74 3.087906 ACTATGGGTGACGGGCCC 61.088 66.667 13.57 13.57 46.26 5.80
74 75 3.873812 CTATGGGTGACGGGCCCC 61.874 72.222 18.66 2.97 45.49 5.80
75 76 4.424867 TATGGGTGACGGGCCCCT 62.425 66.667 18.66 3.90 45.49 4.79
76 77 2.957902 CTATGGGTGACGGGCCCCTA 62.958 65.000 18.66 0.00 45.49 3.53
77 78 2.335134 TATGGGTGACGGGCCCCTAT 62.335 60.000 18.66 7.69 45.49 2.57
78 79 3.557290 GGGTGACGGGCCCCTATC 61.557 72.222 18.66 12.49 40.26 2.08
79 80 2.766651 GGTGACGGGCCCCTATCA 60.767 66.667 18.66 15.26 0.00 2.15
80 81 2.504519 GTGACGGGCCCCTATCAC 59.495 66.667 25.07 25.07 32.80 3.06
81 82 2.766651 TGACGGGCCCCTATCACC 60.767 66.667 18.66 0.00 0.00 4.02
82 83 2.446036 GACGGGCCCCTATCACCT 60.446 66.667 18.66 0.00 0.00 4.00
83 84 2.768344 ACGGGCCCCTATCACCTG 60.768 66.667 18.66 0.08 35.85 4.00
84 85 4.256180 CGGGCCCCTATCACCTGC 62.256 72.222 18.66 0.00 0.00 4.85
85 86 3.096495 GGGCCCCTATCACCTGCA 61.096 66.667 12.23 0.00 0.00 4.41
86 87 2.193248 GGCCCCTATCACCTGCAC 59.807 66.667 0.00 0.00 0.00 4.57
87 88 2.378634 GGCCCCTATCACCTGCACT 61.379 63.158 0.00 0.00 0.00 4.40
88 89 1.054406 GGCCCCTATCACCTGCACTA 61.054 60.000 0.00 0.00 0.00 2.74
89 90 1.059913 GCCCCTATCACCTGCACTAT 58.940 55.000 0.00 0.00 0.00 2.12
90 91 2.257207 GCCCCTATCACCTGCACTATA 58.743 52.381 0.00 0.00 0.00 1.31
91 92 2.840651 GCCCCTATCACCTGCACTATAT 59.159 50.000 0.00 0.00 0.00 0.86
92 93 4.030913 GCCCCTATCACCTGCACTATATA 58.969 47.826 0.00 0.00 0.00 0.86
93 94 4.469945 GCCCCTATCACCTGCACTATATAA 59.530 45.833 0.00 0.00 0.00 0.98
94 95 5.045869 GCCCCTATCACCTGCACTATATAAA 60.046 44.000 0.00 0.00 0.00 1.40
95 96 6.644347 CCCCTATCACCTGCACTATATAAAG 58.356 44.000 0.00 0.00 0.00 1.85
96 97 6.440647 CCCCTATCACCTGCACTATATAAAGA 59.559 42.308 0.00 0.00 0.00 2.52
97 98 7.364232 CCCCTATCACCTGCACTATATAAAGAG 60.364 44.444 0.00 0.00 0.00 2.85
98 99 7.364232 CCCTATCACCTGCACTATATAAAGAGG 60.364 44.444 0.00 0.00 0.00 3.69
99 100 7.179338 CCTATCACCTGCACTATATAAAGAGGT 59.821 40.741 0.00 0.00 32.43 3.85
100 101 6.161855 TCACCTGCACTATATAAAGAGGTG 57.838 41.667 16.73 16.73 46.93 4.00
101 102 5.070446 TCACCTGCACTATATAAAGAGGTGG 59.930 44.000 19.85 9.38 46.01 4.61
102 103 4.348168 ACCTGCACTATATAAAGAGGTGGG 59.652 45.833 0.00 0.00 31.05 4.61
103 104 4.263068 CCTGCACTATATAAAGAGGTGGGG 60.263 50.000 0.00 0.00 0.00 4.96
104 105 3.650942 TGCACTATATAAAGAGGTGGGGG 59.349 47.826 0.00 0.00 0.00 5.40
105 106 3.651423 GCACTATATAAAGAGGTGGGGGT 59.349 47.826 0.00 0.00 0.00 4.95
106 107 4.262938 GCACTATATAAAGAGGTGGGGGTC 60.263 50.000 0.00 0.00 0.00 4.46
107 108 4.021368 CACTATATAAAGAGGTGGGGGTCG 60.021 50.000 0.00 0.00 0.00 4.79
108 109 1.797320 TATAAAGAGGTGGGGGTCGG 58.203 55.000 0.00 0.00 0.00 4.79
109 110 1.632965 ATAAAGAGGTGGGGGTCGGC 61.633 60.000 0.00 0.00 0.00 5.54
153 154 3.069946 CGCCGTACACCCCACCTA 61.070 66.667 0.00 0.00 0.00 3.08
154 155 2.648143 CGCCGTACACCCCACCTAA 61.648 63.158 0.00 0.00 0.00 2.69
155 156 1.909975 GCCGTACACCCCACCTAAT 59.090 57.895 0.00 0.00 0.00 1.73
156 157 0.179065 GCCGTACACCCCACCTAATC 60.179 60.000 0.00 0.00 0.00 1.75
157 158 0.466963 CCGTACACCCCACCTAATCC 59.533 60.000 0.00 0.00 0.00 3.01
158 159 0.466963 CGTACACCCCACCTAATCCC 59.533 60.000 0.00 0.00 0.00 3.85
159 160 0.841961 GTACACCCCACCTAATCCCC 59.158 60.000 0.00 0.00 0.00 4.81
160 161 0.726366 TACACCCCACCTAATCCCCT 59.274 55.000 0.00 0.00 0.00 4.79
161 162 0.726366 ACACCCCACCTAATCCCCTA 59.274 55.000 0.00 0.00 0.00 3.53
162 163 1.137697 CACCCCACCTAATCCCCTAC 58.862 60.000 0.00 0.00 0.00 3.18
163 164 0.029371 ACCCCACCTAATCCCCTACC 60.029 60.000 0.00 0.00 0.00 3.18
164 165 1.125711 CCCCACCTAATCCCCTACCG 61.126 65.000 0.00 0.00 0.00 4.02
165 166 0.105349 CCCACCTAATCCCCTACCGA 60.105 60.000 0.00 0.00 0.00 4.69
166 167 1.484446 CCCACCTAATCCCCTACCGAT 60.484 57.143 0.00 0.00 0.00 4.18
167 168 1.900486 CCACCTAATCCCCTACCGATC 59.100 57.143 0.00 0.00 0.00 3.69
168 169 2.492940 CCACCTAATCCCCTACCGATCT 60.493 54.545 0.00 0.00 0.00 2.75
169 170 3.245514 CCACCTAATCCCCTACCGATCTA 60.246 52.174 0.00 0.00 0.00 1.98
170 171 4.017808 CACCTAATCCCCTACCGATCTAG 58.982 52.174 0.00 0.00 0.00 2.43
171 172 3.011482 ACCTAATCCCCTACCGATCTAGG 59.989 52.174 1.73 1.73 34.04 3.02
177 178 3.522392 CCCTACCGATCTAGGGTTAGT 57.478 52.381 15.95 0.00 45.94 2.24
178 179 3.155501 CCCTACCGATCTAGGGTTAGTG 58.844 54.545 15.95 0.00 45.94 2.74
179 180 3.436180 CCCTACCGATCTAGGGTTAGTGT 60.436 52.174 15.95 0.00 45.94 3.55
180 181 4.202503 CCCTACCGATCTAGGGTTAGTGTA 60.203 50.000 15.95 0.00 45.94 2.90
181 182 5.002516 CCTACCGATCTAGGGTTAGTGTAG 58.997 50.000 0.86 0.00 38.99 2.74
182 183 4.516652 ACCGATCTAGGGTTAGTGTAGT 57.483 45.455 0.00 0.00 32.70 2.73
183 184 4.205587 ACCGATCTAGGGTTAGTGTAGTG 58.794 47.826 0.00 0.00 32.70 2.74
184 185 3.004524 CCGATCTAGGGTTAGTGTAGTGC 59.995 52.174 0.00 0.00 0.00 4.40
185 186 3.884091 CGATCTAGGGTTAGTGTAGTGCT 59.116 47.826 0.00 0.00 0.00 4.40
186 187 4.261238 CGATCTAGGGTTAGTGTAGTGCTG 60.261 50.000 0.00 0.00 0.00 4.41
187 188 4.311520 TCTAGGGTTAGTGTAGTGCTGA 57.688 45.455 0.00 0.00 0.00 4.26
188 189 4.868268 TCTAGGGTTAGTGTAGTGCTGAT 58.132 43.478 0.00 0.00 0.00 2.90
189 190 3.895232 AGGGTTAGTGTAGTGCTGATG 57.105 47.619 0.00 0.00 0.00 3.07
190 191 2.501723 AGGGTTAGTGTAGTGCTGATGG 59.498 50.000 0.00 0.00 0.00 3.51
191 192 2.420129 GGGTTAGTGTAGTGCTGATGGG 60.420 54.545 0.00 0.00 0.00 4.00
192 193 2.500098 GGTTAGTGTAGTGCTGATGGGA 59.500 50.000 0.00 0.00 0.00 4.37
193 194 3.055385 GGTTAGTGTAGTGCTGATGGGAA 60.055 47.826 0.00 0.00 0.00 3.97
194 195 4.184629 GTTAGTGTAGTGCTGATGGGAAG 58.815 47.826 0.00 0.00 0.00 3.46
195 196 1.065854 AGTGTAGTGCTGATGGGAAGC 60.066 52.381 0.00 0.00 41.22 3.86
199 200 2.046023 TGCTGATGGGAAGCACCG 60.046 61.111 0.00 0.00 45.50 4.94
200 201 3.512516 GCTGATGGGAAGCACCGC 61.513 66.667 0.00 0.00 40.52 5.68
201 202 2.825836 CTGATGGGAAGCACCGCC 60.826 66.667 0.00 0.00 40.11 6.13
202 203 3.626996 CTGATGGGAAGCACCGCCA 62.627 63.158 0.00 0.00 40.11 5.69
203 204 3.134127 GATGGGAAGCACCGCCAC 61.134 66.667 0.00 0.00 40.11 5.01
204 205 4.740822 ATGGGAAGCACCGCCACC 62.741 66.667 0.00 0.00 40.11 4.61
208 209 4.947147 GAAGCACCGCCACCACCA 62.947 66.667 0.00 0.00 0.00 4.17
212 213 3.941188 CACCGCCACCACCACTCT 61.941 66.667 0.00 0.00 0.00 3.24
213 214 3.626924 ACCGCCACCACCACTCTC 61.627 66.667 0.00 0.00 0.00 3.20
214 215 3.314331 CCGCCACCACCACTCTCT 61.314 66.667 0.00 0.00 0.00 3.10
215 216 2.047844 CGCCACCACCACTCTCTG 60.048 66.667 0.00 0.00 0.00 3.35
216 217 2.359230 GCCACCACCACTCTCTGC 60.359 66.667 0.00 0.00 0.00 4.26
217 218 2.348998 CCACCACCACTCTCTGCC 59.651 66.667 0.00 0.00 0.00 4.85
218 219 2.519622 CCACCACCACTCTCTGCCA 61.520 63.158 0.00 0.00 0.00 4.92
219 220 1.681666 CACCACCACTCTCTGCCAT 59.318 57.895 0.00 0.00 0.00 4.40
220 221 0.392193 CACCACCACTCTCTGCCATC 60.392 60.000 0.00 0.00 0.00 3.51
221 222 0.837691 ACCACCACTCTCTGCCATCA 60.838 55.000 0.00 0.00 0.00 3.07
222 223 0.392193 CCACCACTCTCTGCCATCAC 60.392 60.000 0.00 0.00 0.00 3.06
223 224 0.738762 CACCACTCTCTGCCATCACG 60.739 60.000 0.00 0.00 0.00 4.35
224 225 1.812922 CCACTCTCTGCCATCACGC 60.813 63.158 0.00 0.00 0.00 5.34
225 226 1.812922 CACTCTCTGCCATCACGCC 60.813 63.158 0.00 0.00 0.00 5.68
226 227 2.584418 CTCTCTGCCATCACGCCG 60.584 66.667 0.00 0.00 0.00 6.46
227 228 4.147449 TCTCTGCCATCACGCCGG 62.147 66.667 0.00 0.00 0.00 6.13
260 261 4.821589 CGGCAACCGGAGCTCCTC 62.822 72.222 29.73 13.09 44.15 3.71
261 262 4.821589 GGCAACCGGAGCTCCTCG 62.822 72.222 29.73 21.16 0.00 4.63
262 263 3.760035 GCAACCGGAGCTCCTCGA 61.760 66.667 29.73 0.00 0.00 4.04
263 264 2.492090 CAACCGGAGCTCCTCGAG 59.508 66.667 29.73 17.54 0.00 4.04
272 273 3.700109 CTCCTCGAGCCACAAGGA 58.300 61.111 6.99 0.00 37.61 3.36
273 274 1.975327 CTCCTCGAGCCACAAGGAA 59.025 57.895 6.99 0.00 38.69 3.36
274 275 0.321671 CTCCTCGAGCCACAAGGAAA 59.678 55.000 6.99 0.00 38.69 3.13
275 276 0.321671 TCCTCGAGCCACAAGGAAAG 59.678 55.000 6.99 0.00 36.27 2.62
276 277 0.674895 CCTCGAGCCACAAGGAAAGG 60.675 60.000 6.99 0.00 36.89 3.11
277 278 0.035458 CTCGAGCCACAAGGAAAGGT 59.965 55.000 0.00 0.00 36.89 3.50
278 279 1.275291 CTCGAGCCACAAGGAAAGGTA 59.725 52.381 0.00 0.00 36.89 3.08
279 280 1.695242 TCGAGCCACAAGGAAAGGTAA 59.305 47.619 0.00 0.00 36.89 2.85
280 281 2.304761 TCGAGCCACAAGGAAAGGTAAT 59.695 45.455 0.00 0.00 36.89 1.89
281 282 3.516300 TCGAGCCACAAGGAAAGGTAATA 59.484 43.478 0.00 0.00 36.89 0.98
282 283 3.621715 CGAGCCACAAGGAAAGGTAATAC 59.378 47.826 0.00 0.00 36.89 1.89
283 284 3.945921 GAGCCACAAGGAAAGGTAATACC 59.054 47.826 0.07 0.07 36.07 2.73
284 285 3.591977 AGCCACAAGGAAAGGTAATACCT 59.408 43.478 6.06 6.06 44.84 3.08
285 286 4.786454 AGCCACAAGGAAAGGTAATACCTA 59.214 41.667 13.03 0.00 42.87 3.08
286 287 5.432060 AGCCACAAGGAAAGGTAATACCTAT 59.568 40.000 13.03 0.51 42.87 2.57
287 288 5.763698 GCCACAAGGAAAGGTAATACCTATC 59.236 44.000 13.03 5.55 42.87 2.08
288 289 6.634039 GCCACAAGGAAAGGTAATACCTATCA 60.634 42.308 13.03 0.00 42.87 2.15
289 290 6.766467 CCACAAGGAAAGGTAATACCTATCAC 59.234 42.308 13.03 4.05 42.87 3.06
290 291 7.365652 CCACAAGGAAAGGTAATACCTATCACT 60.366 40.741 13.03 6.26 42.87 3.41
297 298 4.056050 GGTAATACCTATCACTGTTGCCG 58.944 47.826 1.41 0.00 34.73 5.69
298 299 2.910688 ATACCTATCACTGTTGCCGG 57.089 50.000 0.00 0.00 0.00 6.13
299 300 1.855295 TACCTATCACTGTTGCCGGA 58.145 50.000 5.05 0.00 0.00 5.14
300 301 0.981183 ACCTATCACTGTTGCCGGAA 59.019 50.000 5.05 0.00 0.00 4.30
301 302 1.559682 ACCTATCACTGTTGCCGGAAT 59.440 47.619 5.05 0.00 0.00 3.01
302 303 2.213499 CCTATCACTGTTGCCGGAATC 58.787 52.381 5.05 0.00 0.00 2.52
303 304 2.213499 CTATCACTGTTGCCGGAATCC 58.787 52.381 5.05 0.00 0.00 3.01
304 305 0.620556 ATCACTGTTGCCGGAATCCT 59.379 50.000 5.05 0.00 0.00 3.24
305 306 1.271856 TCACTGTTGCCGGAATCCTA 58.728 50.000 5.05 0.00 0.00 2.94
306 307 1.207089 TCACTGTTGCCGGAATCCTAG 59.793 52.381 5.05 0.00 0.00 3.02
307 308 0.107654 ACTGTTGCCGGAATCCTAGC 60.108 55.000 5.05 0.57 0.00 3.42
308 309 0.815615 CTGTTGCCGGAATCCTAGCC 60.816 60.000 5.05 0.00 0.00 3.93
309 310 1.271840 TGTTGCCGGAATCCTAGCCT 61.272 55.000 5.05 0.00 0.00 4.58
310 311 0.756903 GTTGCCGGAATCCTAGCCTA 59.243 55.000 5.05 0.00 0.00 3.93
311 312 1.140252 GTTGCCGGAATCCTAGCCTAA 59.860 52.381 5.05 0.00 0.00 2.69
312 313 0.756903 TGCCGGAATCCTAGCCTAAC 59.243 55.000 5.05 0.00 0.00 2.34
313 314 0.035036 GCCGGAATCCTAGCCTAACC 59.965 60.000 5.05 0.00 0.00 2.85
314 315 0.317479 CCGGAATCCTAGCCTAACCG 59.683 60.000 0.00 0.00 38.83 4.44
315 316 1.325355 CGGAATCCTAGCCTAACCGA 58.675 55.000 0.00 0.00 41.09 4.69
316 317 1.893801 CGGAATCCTAGCCTAACCGAT 59.106 52.381 0.00 0.00 41.09 4.18
317 318 2.094649 CGGAATCCTAGCCTAACCGATC 60.095 54.545 0.00 0.00 41.09 3.69
318 319 2.234168 GGAATCCTAGCCTAACCGATCC 59.766 54.545 0.00 0.00 0.00 3.36
319 320 2.696526 ATCCTAGCCTAACCGATCCA 57.303 50.000 0.00 0.00 0.00 3.41
320 321 1.700955 TCCTAGCCTAACCGATCCAC 58.299 55.000 0.00 0.00 0.00 4.02
321 322 1.063492 TCCTAGCCTAACCGATCCACA 60.063 52.381 0.00 0.00 0.00 4.17
322 323 1.760613 CCTAGCCTAACCGATCCACAA 59.239 52.381 0.00 0.00 0.00 3.33
323 324 2.169769 CCTAGCCTAACCGATCCACAAA 59.830 50.000 0.00 0.00 0.00 2.83
324 325 2.403252 AGCCTAACCGATCCACAAAG 57.597 50.000 0.00 0.00 0.00 2.77
325 326 1.628846 AGCCTAACCGATCCACAAAGT 59.371 47.619 0.00 0.00 0.00 2.66
326 327 2.007608 GCCTAACCGATCCACAAAGTC 58.992 52.381 0.00 0.00 0.00 3.01
327 328 2.354805 GCCTAACCGATCCACAAAGTCT 60.355 50.000 0.00 0.00 0.00 3.24
328 329 3.118884 GCCTAACCGATCCACAAAGTCTA 60.119 47.826 0.00 0.00 0.00 2.59
329 330 4.443034 GCCTAACCGATCCACAAAGTCTAT 60.443 45.833 0.00 0.00 0.00 1.98
330 331 5.290386 CCTAACCGATCCACAAAGTCTATC 58.710 45.833 0.00 0.00 0.00 2.08
331 332 4.819105 AACCGATCCACAAAGTCTATCA 57.181 40.909 0.00 0.00 0.00 2.15
332 333 5.359194 AACCGATCCACAAAGTCTATCAT 57.641 39.130 0.00 0.00 0.00 2.45
333 334 5.359194 ACCGATCCACAAAGTCTATCATT 57.641 39.130 0.00 0.00 0.00 2.57
334 335 5.118990 ACCGATCCACAAAGTCTATCATTG 58.881 41.667 0.00 0.00 0.00 2.82
335 336 4.512944 CCGATCCACAAAGTCTATCATTGG 59.487 45.833 0.00 0.00 0.00 3.16
336 337 4.024556 CGATCCACAAAGTCTATCATTGGC 60.025 45.833 0.00 0.00 0.00 4.52
337 338 4.299586 TCCACAAAGTCTATCATTGGCA 57.700 40.909 0.00 0.00 0.00 4.92
338 339 4.661222 TCCACAAAGTCTATCATTGGCAA 58.339 39.130 0.68 0.68 0.00 4.52
339 340 4.458989 TCCACAAAGTCTATCATTGGCAAC 59.541 41.667 0.00 0.00 0.00 4.17
340 341 4.460382 CCACAAAGTCTATCATTGGCAACT 59.540 41.667 0.00 0.00 37.61 3.16
341 342 5.392380 CCACAAAGTCTATCATTGGCAACTC 60.392 44.000 0.00 0.00 37.61 3.01
342 343 4.393062 ACAAAGTCTATCATTGGCAACTCG 59.607 41.667 0.00 0.00 37.61 4.18
343 344 2.555199 AGTCTATCATTGGCAACTCGC 58.445 47.619 0.00 0.00 41.28 5.03
352 353 4.272100 GCAACTCGCCGGAAGTTA 57.728 55.556 18.82 0.00 32.94 2.24
353 354 2.079049 GCAACTCGCCGGAAGTTAG 58.921 57.895 18.82 14.70 32.94 2.34
354 355 0.389426 GCAACTCGCCGGAAGTTAGA 60.389 55.000 18.82 2.08 32.94 2.10
355 356 1.630148 CAACTCGCCGGAAGTTAGAG 58.370 55.000 18.82 12.24 35.28 2.43
356 357 0.531200 AACTCGCCGGAAGTTAGAGG 59.469 55.000 18.07 0.00 33.58 3.69
357 358 0.611340 ACTCGCCGGAAGTTAGAGGT 60.611 55.000 5.05 0.00 33.58 3.85
358 359 0.100861 CTCGCCGGAAGTTAGAGGTC 59.899 60.000 5.05 0.00 0.00 3.85
359 360 0.323178 TCGCCGGAAGTTAGAGGTCT 60.323 55.000 5.05 0.00 0.00 3.85
360 361 0.531200 CGCCGGAAGTTAGAGGTCTT 59.469 55.000 5.05 0.00 0.00 3.01
361 362 1.067071 CGCCGGAAGTTAGAGGTCTTT 60.067 52.381 5.05 0.00 0.00 2.52
362 363 2.612221 CGCCGGAAGTTAGAGGTCTTTT 60.612 50.000 5.05 0.00 0.00 2.27
363 364 2.742589 GCCGGAAGTTAGAGGTCTTTTG 59.257 50.000 5.05 0.00 0.00 2.44
364 365 3.335579 CCGGAAGTTAGAGGTCTTTTGG 58.664 50.000 0.00 0.00 0.00 3.28
365 366 3.007614 CCGGAAGTTAGAGGTCTTTTGGA 59.992 47.826 0.00 0.00 0.00 3.53
366 367 3.995048 CGGAAGTTAGAGGTCTTTTGGAC 59.005 47.826 0.00 0.00 43.79 4.02
385 386 2.106477 CCTTCAGAAGGCAGAAGACC 57.894 55.000 16.65 0.00 42.95 3.85
386 387 1.674221 CCTTCAGAAGGCAGAAGACCG 60.674 57.143 16.65 0.00 42.95 4.79
387 388 1.273606 CTTCAGAAGGCAGAAGACCGA 59.726 52.381 1.69 0.00 42.95 4.69
388 389 0.891373 TCAGAAGGCAGAAGACCGAG 59.109 55.000 0.00 0.00 0.00 4.63
389 390 0.891373 CAGAAGGCAGAAGACCGAGA 59.109 55.000 0.00 0.00 0.00 4.04
390 391 0.892063 AGAAGGCAGAAGACCGAGAC 59.108 55.000 0.00 0.00 0.00 3.36
391 392 0.603569 GAAGGCAGAAGACCGAGACA 59.396 55.000 0.00 0.00 0.00 3.41
392 393 1.205893 GAAGGCAGAAGACCGAGACAT 59.794 52.381 0.00 0.00 0.00 3.06
393 394 0.820871 AGGCAGAAGACCGAGACATC 59.179 55.000 0.00 0.00 0.00 3.06
394 395 0.820871 GGCAGAAGACCGAGACATCT 59.179 55.000 0.00 0.00 0.00 2.90
395 396 1.205893 GGCAGAAGACCGAGACATCTT 59.794 52.381 0.00 0.00 37.88 2.40
396 397 2.266554 GCAGAAGACCGAGACATCTTG 58.733 52.381 0.00 0.00 35.29 3.02
397 398 2.353208 GCAGAAGACCGAGACATCTTGT 60.353 50.000 0.00 0.00 35.29 3.16
398 399 3.862642 GCAGAAGACCGAGACATCTTGTT 60.863 47.826 0.00 0.00 35.29 2.83
399 400 4.310769 CAGAAGACCGAGACATCTTGTTT 58.689 43.478 0.00 0.00 35.29 2.83
400 401 4.387256 CAGAAGACCGAGACATCTTGTTTC 59.613 45.833 0.00 0.00 35.29 2.78
401 402 4.282195 AGAAGACCGAGACATCTTGTTTCT 59.718 41.667 0.00 0.43 35.29 2.52
402 403 5.477291 AGAAGACCGAGACATCTTGTTTCTA 59.523 40.000 0.00 0.00 35.29 2.10
403 404 5.923733 AGACCGAGACATCTTGTTTCTAT 57.076 39.130 0.00 0.00 30.18 1.98
404 405 5.897050 AGACCGAGACATCTTGTTTCTATC 58.103 41.667 0.00 0.00 30.18 2.08
405 406 5.654650 AGACCGAGACATCTTGTTTCTATCT 59.345 40.000 0.00 0.00 30.18 1.98
406 407 5.655488 ACCGAGACATCTTGTTTCTATCTG 58.345 41.667 0.00 0.00 30.18 2.90
407 408 5.419155 ACCGAGACATCTTGTTTCTATCTGA 59.581 40.000 0.00 0.00 30.18 3.27
408 409 6.071334 ACCGAGACATCTTGTTTCTATCTGAA 60.071 38.462 0.00 0.00 30.18 3.02
409 410 6.813649 CCGAGACATCTTGTTTCTATCTGAAA 59.186 38.462 0.00 0.00 41.85 2.69
410 411 7.493971 CCGAGACATCTTGTTTCTATCTGAAAT 59.506 37.037 0.00 0.00 45.19 2.17
411 412 9.521503 CGAGACATCTTGTTTCTATCTGAAATA 57.478 33.333 0.00 0.00 45.19 1.40
433 434 7.873739 ATAAAATTGTGTAGTCAAAAGCTGC 57.126 32.000 0.00 0.00 0.00 5.25
434 435 4.916983 AATTGTGTAGTCAAAAGCTGCA 57.083 36.364 1.02 0.00 0.00 4.41
435 436 3.969117 TTGTGTAGTCAAAAGCTGCAG 57.031 42.857 10.11 10.11 29.68 4.41
436 437 1.603802 TGTGTAGTCAAAAGCTGCAGC 59.396 47.619 31.53 31.53 42.49 5.25
453 454 3.676091 GCGTTTTCGGTGGAGATTG 57.324 52.632 0.00 0.00 44.29 2.67
454 455 0.168128 GCGTTTTCGGTGGAGATTGG 59.832 55.000 0.00 0.00 44.29 3.16
455 456 0.802494 CGTTTTCGGTGGAGATTGGG 59.198 55.000 0.00 0.00 39.94 4.12
456 457 1.609580 CGTTTTCGGTGGAGATTGGGA 60.610 52.381 0.00 0.00 39.94 4.37
457 458 1.810755 GTTTTCGGTGGAGATTGGGAC 59.189 52.381 0.00 0.00 0.00 4.46
458 459 1.358152 TTTCGGTGGAGATTGGGACT 58.642 50.000 0.00 0.00 0.00 3.85
459 460 1.358152 TTCGGTGGAGATTGGGACTT 58.642 50.000 0.00 0.00 0.00 3.01
460 461 2.241281 TCGGTGGAGATTGGGACTTA 57.759 50.000 0.00 0.00 0.00 2.24
461 462 1.829222 TCGGTGGAGATTGGGACTTAC 59.171 52.381 0.00 0.00 0.00 2.34
462 463 1.134491 CGGTGGAGATTGGGACTTACC 60.134 57.143 0.00 0.00 38.08 2.85
463 464 1.913419 GGTGGAGATTGGGACTTACCA 59.087 52.381 0.00 0.00 41.20 3.25
478 479 2.672651 CCAACATGTGGGCTCGCA 60.673 61.111 6.26 0.27 44.64 5.10
479 480 2.693762 CCAACATGTGGGCTCGCAG 61.694 63.158 6.26 0.21 44.64 5.18
480 481 3.058160 AACATGTGGGCTCGCAGC 61.058 61.111 5.81 0.11 41.46 5.25
481 482 3.557903 AACATGTGGGCTCGCAGCT 62.558 57.895 5.81 0.00 41.99 4.24
482 483 3.506096 CATGTGGGCTCGCAGCTG 61.506 66.667 10.11 10.11 41.99 4.24
483 484 4.025858 ATGTGGGCTCGCAGCTGT 62.026 61.111 16.64 0.00 41.99 4.40
484 485 4.994471 TGTGGGCTCGCAGCTGTG 62.994 66.667 21.43 21.43 41.99 3.66
485 486 4.687215 GTGGGCTCGCAGCTGTGA 62.687 66.667 27.32 27.32 41.99 3.58
486 487 3.709633 TGGGCTCGCAGCTGTGAT 61.710 61.111 29.02 0.00 41.99 3.06
487 488 3.200593 GGGCTCGCAGCTGTGATG 61.201 66.667 29.02 22.17 41.99 3.07
488 489 3.200593 GGCTCGCAGCTGTGATGG 61.201 66.667 29.02 19.51 41.99 3.51
489 490 2.435586 GCTCGCAGCTGTGATGGT 60.436 61.111 29.02 0.00 38.45 3.55
490 491 1.153568 GCTCGCAGCTGTGATGGTA 60.154 57.895 29.02 7.91 38.45 3.25
491 492 1.150567 GCTCGCAGCTGTGATGGTAG 61.151 60.000 29.02 18.11 38.45 3.18
492 493 0.457443 CTCGCAGCTGTGATGGTAGA 59.543 55.000 29.02 6.42 33.67 2.59
493 494 0.457443 TCGCAGCTGTGATGGTAGAG 59.543 55.000 25.69 0.00 0.00 2.43
494 495 0.529337 CGCAGCTGTGATGGTAGAGG 60.529 60.000 22.94 0.00 0.00 3.69
495 496 0.826715 GCAGCTGTGATGGTAGAGGA 59.173 55.000 16.64 0.00 0.00 3.71
496 497 1.208052 GCAGCTGTGATGGTAGAGGAA 59.792 52.381 16.64 0.00 0.00 3.36
497 498 2.741228 GCAGCTGTGATGGTAGAGGAAG 60.741 54.545 16.64 0.00 0.00 3.46
498 499 2.499289 CAGCTGTGATGGTAGAGGAAGT 59.501 50.000 5.25 0.00 0.00 3.01
499 500 2.499289 AGCTGTGATGGTAGAGGAAGTG 59.501 50.000 0.00 0.00 0.00 3.16
500 501 2.898705 CTGTGATGGTAGAGGAAGTGC 58.101 52.381 0.00 0.00 0.00 4.40
501 502 2.499289 CTGTGATGGTAGAGGAAGTGCT 59.501 50.000 0.00 0.00 0.00 4.40
502 503 2.234661 TGTGATGGTAGAGGAAGTGCTG 59.765 50.000 0.00 0.00 0.00 4.41
503 504 1.833630 TGATGGTAGAGGAAGTGCTGG 59.166 52.381 0.00 0.00 0.00 4.85
504 505 2.111384 GATGGTAGAGGAAGTGCTGGA 58.889 52.381 0.00 0.00 0.00 3.86
505 506 2.024176 TGGTAGAGGAAGTGCTGGAA 57.976 50.000 0.00 0.00 0.00 3.53
506 507 2.551270 TGGTAGAGGAAGTGCTGGAAT 58.449 47.619 0.00 0.00 0.00 3.01
507 508 2.912956 TGGTAGAGGAAGTGCTGGAATT 59.087 45.455 0.00 0.00 0.00 2.17
508 509 3.274288 GGTAGAGGAAGTGCTGGAATTG 58.726 50.000 0.00 0.00 0.00 2.32
509 510 1.831580 AGAGGAAGTGCTGGAATTGC 58.168 50.000 0.00 0.00 0.00 3.56
510 511 1.074405 AGAGGAAGTGCTGGAATTGCA 59.926 47.619 3.62 0.00 38.19 4.08
511 512 1.888512 GAGGAAGTGCTGGAATTGCAA 59.111 47.619 0.00 0.00 42.41 4.08
512 513 2.494870 GAGGAAGTGCTGGAATTGCAAT 59.505 45.455 5.99 5.99 42.41 3.56
513 514 2.232941 AGGAAGTGCTGGAATTGCAATG 59.767 45.455 13.82 1.00 42.41 2.82
514 515 2.028748 GGAAGTGCTGGAATTGCAATGT 60.029 45.455 13.82 3.19 42.41 2.71
515 516 3.555586 GGAAGTGCTGGAATTGCAATGTT 60.556 43.478 13.82 0.00 42.41 2.71
516 517 3.756933 AGTGCTGGAATTGCAATGTTT 57.243 38.095 13.82 0.00 42.41 2.83
517 518 4.075963 AGTGCTGGAATTGCAATGTTTT 57.924 36.364 13.82 0.00 42.41 2.43
518 519 3.810941 AGTGCTGGAATTGCAATGTTTTG 59.189 39.130 13.82 4.21 42.41 2.44
519 520 3.058777 GTGCTGGAATTGCAATGTTTTGG 60.059 43.478 13.82 3.17 42.41 3.28
520 521 3.181457 TGCTGGAATTGCAATGTTTTGGA 60.181 39.130 13.82 1.48 37.51 3.53
521 522 3.434299 GCTGGAATTGCAATGTTTTGGAG 59.566 43.478 13.82 3.92 34.44 3.86
522 523 4.800249 GCTGGAATTGCAATGTTTTGGAGA 60.800 41.667 13.82 0.00 34.44 3.71
523 524 5.287674 TGGAATTGCAATGTTTTGGAGAA 57.712 34.783 13.82 0.00 34.44 2.87
524 525 5.299148 TGGAATTGCAATGTTTTGGAGAAG 58.701 37.500 13.82 0.00 34.44 2.85
525 526 5.163322 TGGAATTGCAATGTTTTGGAGAAGT 60.163 36.000 13.82 0.00 34.44 3.01
526 527 5.178067 GGAATTGCAATGTTTTGGAGAAGTG 59.822 40.000 13.82 0.00 34.44 3.16
527 528 3.731652 TGCAATGTTTTGGAGAAGTGG 57.268 42.857 0.00 0.00 33.22 4.00
528 529 3.030291 TGCAATGTTTTGGAGAAGTGGT 58.970 40.909 0.00 0.00 33.22 4.16
529 530 3.068024 TGCAATGTTTTGGAGAAGTGGTC 59.932 43.478 0.00 0.00 33.22 4.02
530 531 3.319122 GCAATGTTTTGGAGAAGTGGTCT 59.681 43.478 0.00 0.00 34.52 3.85
531 532 4.518970 GCAATGTTTTGGAGAAGTGGTCTA 59.481 41.667 0.00 0.00 32.98 2.59
532 533 5.335191 GCAATGTTTTGGAGAAGTGGTCTAG 60.335 44.000 0.00 0.00 32.98 2.43
533 534 5.825593 ATGTTTTGGAGAAGTGGTCTAGA 57.174 39.130 0.00 0.00 36.41 2.43
534 535 5.825593 TGTTTTGGAGAAGTGGTCTAGAT 57.174 39.130 0.00 0.00 36.41 1.98
535 536 5.551233 TGTTTTGGAGAAGTGGTCTAGATG 58.449 41.667 0.00 0.00 36.41 2.90
536 537 5.071788 TGTTTTGGAGAAGTGGTCTAGATGT 59.928 40.000 0.00 0.00 36.41 3.06
537 538 4.808414 TTGGAGAAGTGGTCTAGATGTG 57.192 45.455 0.00 0.00 36.41 3.21
538 539 3.099905 TGGAGAAGTGGTCTAGATGTGG 58.900 50.000 0.00 0.00 36.41 4.17
539 540 3.245622 TGGAGAAGTGGTCTAGATGTGGA 60.246 47.826 0.00 0.00 36.41 4.02
540 541 3.383185 GGAGAAGTGGTCTAGATGTGGAG 59.617 52.174 0.00 0.00 36.41 3.86
541 542 2.763448 AGAAGTGGTCTAGATGTGGAGC 59.237 50.000 0.00 0.00 33.56 4.70
542 543 2.541233 AGTGGTCTAGATGTGGAGCT 57.459 50.000 6.95 0.00 33.07 4.09
543 544 3.671740 AGTGGTCTAGATGTGGAGCTA 57.328 47.619 6.95 0.00 33.07 3.32
544 545 3.982516 AGTGGTCTAGATGTGGAGCTAA 58.017 45.455 6.95 0.00 33.07 3.09
545 546 4.353777 AGTGGTCTAGATGTGGAGCTAAA 58.646 43.478 6.95 0.00 33.07 1.85
546 547 4.965532 AGTGGTCTAGATGTGGAGCTAAAT 59.034 41.667 6.95 0.00 33.07 1.40
547 548 6.136857 AGTGGTCTAGATGTGGAGCTAAATA 58.863 40.000 6.95 0.00 33.07 1.40
548 549 6.611642 AGTGGTCTAGATGTGGAGCTAAATAA 59.388 38.462 6.95 0.00 33.07 1.40
549 550 6.702282 GTGGTCTAGATGTGGAGCTAAATAAC 59.298 42.308 6.95 0.00 33.07 1.89
550 551 6.611642 TGGTCTAGATGTGGAGCTAAATAACT 59.388 38.462 6.95 0.00 33.07 2.24
551 552 7.783119 TGGTCTAGATGTGGAGCTAAATAACTA 59.217 37.037 6.95 0.00 33.07 2.24
552 553 8.083462 GGTCTAGATGTGGAGCTAAATAACTAC 58.917 40.741 0.00 0.00 0.00 2.73
553 554 8.852135 GTCTAGATGTGGAGCTAAATAACTACT 58.148 37.037 0.00 0.00 0.00 2.57
554 555 9.069082 TCTAGATGTGGAGCTAAATAACTACTC 57.931 37.037 0.00 0.00 0.00 2.59
555 556 7.056844 AGATGTGGAGCTAAATAACTACTCC 57.943 40.000 0.00 0.00 45.87 3.85
563 564 9.998106 GGAGCTAAATAACTACTCCAAATATCA 57.002 33.333 2.54 0.00 45.16 2.15
592 593 8.429641 TCTAACATATAAAGCCTCCTAAAGTGG 58.570 37.037 0.00 0.00 0.00 4.00
593 594 6.576778 ACATATAAAGCCTCCTAAAGTGGT 57.423 37.500 0.00 0.00 0.00 4.16
594 595 7.685849 ACATATAAAGCCTCCTAAAGTGGTA 57.314 36.000 0.00 0.00 0.00 3.25
1102 1143 2.280797 GAGGTGCAGCGTTGACCA 60.281 61.111 10.78 0.52 31.12 4.02
1442 1519 6.119536 TCACCAAATACTCTCTCTCTCTCTC 58.880 44.000 0.00 0.00 0.00 3.20
1447 1524 7.657761 CCAAATACTCTCTCTCTCTCTCTCTAC 59.342 44.444 0.00 0.00 0.00 2.59
2070 2150 5.359860 TGTCGAAGATCTGGTGAAGCTATAA 59.640 40.000 0.00 0.00 40.67 0.98
2108 2188 0.246635 TCTCAACTCCTACTTGCGCC 59.753 55.000 4.18 0.00 0.00 6.53
2494 2574 8.694394 CACTGCTTAAGATTTCTTAACTTTTGC 58.306 33.333 6.67 10.12 41.85 3.68
2635 2718 4.279420 AGTGCACTTCTTTTTGAGGAATCC 59.721 41.667 15.25 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.819284 GGATCTAAGGGCCCGGTGG 61.819 68.421 18.44 11.09 0.00 4.61
12 13 2.829592 GGATCTAAGGGCCCGGTG 59.170 66.667 18.44 10.51 0.00 4.94
13 14 2.842936 CGGATCTAAGGGCCCGGT 60.843 66.667 18.44 11.65 38.42 5.28
14 15 2.842936 ACGGATCTAAGGGCCCGG 60.843 66.667 18.44 11.27 45.63 5.73
15 16 2.421739 CACGGATCTAAGGGCCCG 59.578 66.667 18.44 1.51 46.65 6.13
16 17 2.111251 GCACGGATCTAAGGGCCC 59.889 66.667 16.46 16.46 0.00 5.80
18 19 2.111251 GGGCACGGATCTAAGGGC 59.889 66.667 0.00 0.00 35.73 5.19
19 20 1.048724 TCAGGGCACGGATCTAAGGG 61.049 60.000 0.00 0.00 0.00 3.95
20 21 1.001406 GATCAGGGCACGGATCTAAGG 59.999 57.143 20.31 0.00 42.66 2.69
21 22 1.336332 CGATCAGGGCACGGATCTAAG 60.336 57.143 23.86 7.65 43.43 2.18
22 23 0.673985 CGATCAGGGCACGGATCTAA 59.326 55.000 23.86 0.00 43.43 2.10
23 24 2.341452 CGATCAGGGCACGGATCTA 58.659 57.895 23.86 0.00 43.43 1.98
24 25 3.133014 CGATCAGGGCACGGATCT 58.867 61.111 23.86 0.00 43.43 2.75
34 35 2.669133 TTGAGCACCCCCGATCAGG 61.669 63.158 0.00 0.00 40.63 3.86
35 36 1.450312 GTTGAGCACCCCCGATCAG 60.450 63.158 0.00 0.00 0.00 2.90
36 37 2.668632 GTTGAGCACCCCCGATCA 59.331 61.111 0.00 0.00 0.00 2.92
37 38 2.124695 GGTTGAGCACCCCCGATC 60.125 66.667 0.00 0.00 40.19 3.69
44 45 3.175133 CCATAGTGGGTTGAGCACC 57.825 57.895 0.00 0.00 46.46 5.01
62 63 2.766651 TGATAGGGGCCCGTCACC 60.767 66.667 23.00 11.76 0.00 4.02
63 64 2.504519 GTGATAGGGGCCCGTCAC 59.495 66.667 33.36 33.36 37.07 3.67
64 65 2.766651 GGTGATAGGGGCCCGTCA 60.767 66.667 23.00 24.19 0.00 4.35
65 66 2.446036 AGGTGATAGGGGCCCGTC 60.446 66.667 23.00 19.70 0.00 4.79
66 67 2.768344 CAGGTGATAGGGGCCCGT 60.768 66.667 22.89 22.89 0.00 5.28
67 68 4.256180 GCAGGTGATAGGGGCCCG 62.256 72.222 18.95 0.34 0.00 6.13
68 69 3.096495 TGCAGGTGATAGGGGCCC 61.096 66.667 17.12 17.12 0.00 5.80
69 70 1.054406 TAGTGCAGGTGATAGGGGCC 61.054 60.000 0.00 0.00 0.00 5.80
70 71 1.059913 ATAGTGCAGGTGATAGGGGC 58.940 55.000 0.00 0.00 0.00 5.80
71 72 6.440647 TCTTTATATAGTGCAGGTGATAGGGG 59.559 42.308 0.00 0.00 0.00 4.79
72 73 7.364232 CCTCTTTATATAGTGCAGGTGATAGGG 60.364 44.444 0.00 0.00 0.00 3.53
73 74 7.179338 ACCTCTTTATATAGTGCAGGTGATAGG 59.821 40.741 0.00 0.00 31.37 2.57
74 75 8.128322 ACCTCTTTATATAGTGCAGGTGATAG 57.872 38.462 0.00 0.00 31.37 2.08
78 79 5.300752 CCACCTCTTTATATAGTGCAGGTG 58.699 45.833 16.37 16.37 46.11 4.00
79 80 4.348168 CCCACCTCTTTATATAGTGCAGGT 59.652 45.833 0.00 0.00 32.81 4.00
80 81 4.263068 CCCCACCTCTTTATATAGTGCAGG 60.263 50.000 0.00 0.00 0.00 4.85
81 82 4.263068 CCCCCACCTCTTTATATAGTGCAG 60.263 50.000 0.00 0.00 0.00 4.41
82 83 3.650942 CCCCCACCTCTTTATATAGTGCA 59.349 47.826 0.00 0.00 0.00 4.57
83 84 3.651423 ACCCCCACCTCTTTATATAGTGC 59.349 47.826 0.00 0.00 0.00 4.40
84 85 4.021368 CGACCCCCACCTCTTTATATAGTG 60.021 50.000 0.00 0.00 0.00 2.74
85 86 4.158015 CGACCCCCACCTCTTTATATAGT 58.842 47.826 0.00 0.00 0.00 2.12
86 87 3.514309 CCGACCCCCACCTCTTTATATAG 59.486 52.174 0.00 0.00 0.00 1.31
87 88 3.513517 CCGACCCCCACCTCTTTATATA 58.486 50.000 0.00 0.00 0.00 0.86
88 89 2.335933 CCGACCCCCACCTCTTTATAT 58.664 52.381 0.00 0.00 0.00 0.86
89 90 1.797320 CCGACCCCCACCTCTTTATA 58.203 55.000 0.00 0.00 0.00 0.98
90 91 1.632965 GCCGACCCCCACCTCTTTAT 61.633 60.000 0.00 0.00 0.00 1.40
91 92 2.295602 GCCGACCCCCACCTCTTTA 61.296 63.158 0.00 0.00 0.00 1.85
92 93 3.647771 GCCGACCCCCACCTCTTT 61.648 66.667 0.00 0.00 0.00 2.52
136 137 1.963464 ATTAGGTGGGGTGTACGGCG 61.963 60.000 4.80 4.80 0.00 6.46
137 138 0.179065 GATTAGGTGGGGTGTACGGC 60.179 60.000 0.00 0.00 0.00 5.68
138 139 0.466963 GGATTAGGTGGGGTGTACGG 59.533 60.000 0.00 0.00 0.00 4.02
139 140 0.466963 GGGATTAGGTGGGGTGTACG 59.533 60.000 0.00 0.00 0.00 3.67
140 141 0.841961 GGGGATTAGGTGGGGTGTAC 59.158 60.000 0.00 0.00 0.00 2.90
141 142 0.726366 AGGGGATTAGGTGGGGTGTA 59.274 55.000 0.00 0.00 0.00 2.90
142 143 0.726366 TAGGGGATTAGGTGGGGTGT 59.274 55.000 0.00 0.00 0.00 4.16
143 144 1.137697 GTAGGGGATTAGGTGGGGTG 58.862 60.000 0.00 0.00 0.00 4.61
144 145 0.029371 GGTAGGGGATTAGGTGGGGT 60.029 60.000 0.00 0.00 0.00 4.95
145 146 1.125711 CGGTAGGGGATTAGGTGGGG 61.126 65.000 0.00 0.00 0.00 4.96
146 147 0.105349 TCGGTAGGGGATTAGGTGGG 60.105 60.000 0.00 0.00 0.00 4.61
147 148 1.900486 GATCGGTAGGGGATTAGGTGG 59.100 57.143 0.00 0.00 0.00 4.61
148 149 2.890814 AGATCGGTAGGGGATTAGGTG 58.109 52.381 0.00 0.00 0.00 4.00
149 150 3.011482 CCTAGATCGGTAGGGGATTAGGT 59.989 52.174 0.00 0.00 36.63 3.08
150 151 3.633418 CCTAGATCGGTAGGGGATTAGG 58.367 54.545 0.00 0.00 36.63 2.69
158 159 3.830121 ACACTAACCCTAGATCGGTAGG 58.170 50.000 1.73 1.73 39.62 3.18
159 160 5.469421 CACTACACTAACCCTAGATCGGTAG 59.531 48.000 0.00 0.00 31.69 3.18
160 161 5.371526 CACTACACTAACCCTAGATCGGTA 58.628 45.833 0.00 0.00 31.69 4.02
161 162 4.205587 CACTACACTAACCCTAGATCGGT 58.794 47.826 0.00 0.00 34.07 4.69
162 163 3.004524 GCACTACACTAACCCTAGATCGG 59.995 52.174 0.00 0.00 0.00 4.18
163 164 3.884091 AGCACTACACTAACCCTAGATCG 59.116 47.826 0.00 0.00 0.00 3.69
164 165 4.888239 TCAGCACTACACTAACCCTAGATC 59.112 45.833 0.00 0.00 0.00 2.75
165 166 4.868268 TCAGCACTACACTAACCCTAGAT 58.132 43.478 0.00 0.00 0.00 1.98
166 167 4.311520 TCAGCACTACACTAACCCTAGA 57.688 45.455 0.00 0.00 0.00 2.43
167 168 4.202161 CCATCAGCACTACACTAACCCTAG 60.202 50.000 0.00 0.00 0.00 3.02
168 169 3.704566 CCATCAGCACTACACTAACCCTA 59.295 47.826 0.00 0.00 0.00 3.53
169 170 2.501723 CCATCAGCACTACACTAACCCT 59.498 50.000 0.00 0.00 0.00 4.34
170 171 2.420129 CCCATCAGCACTACACTAACCC 60.420 54.545 0.00 0.00 0.00 4.11
171 172 2.500098 TCCCATCAGCACTACACTAACC 59.500 50.000 0.00 0.00 0.00 2.85
172 173 3.887621 TCCCATCAGCACTACACTAAC 57.112 47.619 0.00 0.00 0.00 2.34
173 174 3.369471 GCTTCCCATCAGCACTACACTAA 60.369 47.826 0.00 0.00 37.22 2.24
174 175 2.168521 GCTTCCCATCAGCACTACACTA 59.831 50.000 0.00 0.00 37.22 2.74
175 176 1.065854 GCTTCCCATCAGCACTACACT 60.066 52.381 0.00 0.00 37.22 3.55
176 177 1.339055 TGCTTCCCATCAGCACTACAC 60.339 52.381 0.00 0.00 42.49 2.90
177 178 0.983467 TGCTTCCCATCAGCACTACA 59.017 50.000 0.00 0.00 42.49 2.74
178 179 3.861341 TGCTTCCCATCAGCACTAC 57.139 52.632 0.00 0.00 42.49 2.73
182 183 2.046023 CGGTGCTTCCCATCAGCA 60.046 61.111 0.00 0.00 45.21 4.41
183 184 3.512516 GCGGTGCTTCCCATCAGC 61.513 66.667 0.00 0.00 37.82 4.26
184 185 2.825836 GGCGGTGCTTCCCATCAG 60.826 66.667 0.00 0.00 0.00 2.90
185 186 3.645660 TGGCGGTGCTTCCCATCA 61.646 61.111 0.00 0.00 0.00 3.07
186 187 3.134127 GTGGCGGTGCTTCCCATC 61.134 66.667 0.00 0.00 0.00 3.51
187 188 4.740822 GGTGGCGGTGCTTCCCAT 62.741 66.667 0.00 0.00 0.00 4.00
191 192 4.947147 TGGTGGTGGCGGTGCTTC 62.947 66.667 0.00 0.00 0.00 3.86
195 196 3.883744 GAGAGTGGTGGTGGCGGTG 62.884 68.421 0.00 0.00 0.00 4.94
196 197 3.626924 GAGAGTGGTGGTGGCGGT 61.627 66.667 0.00 0.00 0.00 5.68
197 198 3.314331 AGAGAGTGGTGGTGGCGG 61.314 66.667 0.00 0.00 0.00 6.13
198 199 2.047844 CAGAGAGTGGTGGTGGCG 60.048 66.667 0.00 0.00 0.00 5.69
199 200 2.359230 GCAGAGAGTGGTGGTGGC 60.359 66.667 0.00 0.00 0.00 5.01
200 201 1.845627 ATGGCAGAGAGTGGTGGTGG 61.846 60.000 0.00 0.00 0.00 4.61
201 202 0.392193 GATGGCAGAGAGTGGTGGTG 60.392 60.000 0.00 0.00 0.00 4.17
202 203 0.837691 TGATGGCAGAGAGTGGTGGT 60.838 55.000 0.00 0.00 0.00 4.16
203 204 0.392193 GTGATGGCAGAGAGTGGTGG 60.392 60.000 0.00 0.00 0.00 4.61
204 205 0.738762 CGTGATGGCAGAGAGTGGTG 60.739 60.000 0.00 0.00 0.00 4.17
205 206 1.593787 CGTGATGGCAGAGAGTGGT 59.406 57.895 0.00 0.00 0.00 4.16
206 207 1.812922 GCGTGATGGCAGAGAGTGG 60.813 63.158 0.00 0.00 0.00 4.00
207 208 1.812922 GGCGTGATGGCAGAGAGTG 60.813 63.158 0.00 0.00 44.08 3.51
208 209 2.581354 GGCGTGATGGCAGAGAGT 59.419 61.111 0.00 0.00 44.08 3.24
209 210 2.584418 CGGCGTGATGGCAGAGAG 60.584 66.667 0.00 0.00 45.16 3.20
210 211 4.147449 CCGGCGTGATGGCAGAGA 62.147 66.667 6.01 0.00 45.16 3.10
244 245 4.821589 CGAGGAGCTCCGGTTGCC 62.822 72.222 26.95 11.74 42.08 4.52
245 246 3.708220 CTCGAGGAGCTCCGGTTGC 62.708 68.421 26.95 13.67 42.08 4.17
246 247 2.492090 CTCGAGGAGCTCCGGTTG 59.508 66.667 26.95 17.17 42.08 3.77
257 258 0.674895 CCTTTCCTTGTGGCTCGAGG 60.675 60.000 15.58 15.41 46.55 4.63
258 259 0.035458 ACCTTTCCTTGTGGCTCGAG 59.965 55.000 8.45 8.45 0.00 4.04
259 260 1.344065 TACCTTTCCTTGTGGCTCGA 58.656 50.000 0.00 0.00 0.00 4.04
260 261 2.178912 TTACCTTTCCTTGTGGCTCG 57.821 50.000 0.00 0.00 0.00 5.03
261 262 3.945921 GGTATTACCTTTCCTTGTGGCTC 59.054 47.826 5.56 0.00 34.73 4.70
262 263 3.964411 GGTATTACCTTTCCTTGTGGCT 58.036 45.455 5.56 0.00 34.73 4.75
275 276 4.056050 CGGCAACAGTGATAGGTATTACC 58.944 47.826 4.57 4.57 38.99 2.85
276 277 4.056050 CCGGCAACAGTGATAGGTATTAC 58.944 47.826 0.00 0.00 0.00 1.89
277 278 3.962063 TCCGGCAACAGTGATAGGTATTA 59.038 43.478 0.00 0.00 0.00 0.98
278 279 2.769663 TCCGGCAACAGTGATAGGTATT 59.230 45.455 0.00 0.00 0.00 1.89
279 280 2.394632 TCCGGCAACAGTGATAGGTAT 58.605 47.619 0.00 0.00 0.00 2.73
280 281 1.855295 TCCGGCAACAGTGATAGGTA 58.145 50.000 0.00 0.00 0.00 3.08
281 282 0.981183 TTCCGGCAACAGTGATAGGT 59.019 50.000 0.00 0.00 0.00 3.08
282 283 2.213499 GATTCCGGCAACAGTGATAGG 58.787 52.381 0.00 0.00 0.00 2.57
283 284 2.158900 AGGATTCCGGCAACAGTGATAG 60.159 50.000 0.00 0.00 0.00 2.08
284 285 1.837439 AGGATTCCGGCAACAGTGATA 59.163 47.619 0.00 0.00 0.00 2.15
285 286 0.620556 AGGATTCCGGCAACAGTGAT 59.379 50.000 0.00 0.00 0.00 3.06
286 287 1.207089 CTAGGATTCCGGCAACAGTGA 59.793 52.381 0.00 0.00 0.00 3.41
287 288 1.656652 CTAGGATTCCGGCAACAGTG 58.343 55.000 0.00 0.00 0.00 3.66
288 289 0.107654 GCTAGGATTCCGGCAACAGT 60.108 55.000 15.45 0.00 0.00 3.55
289 290 0.815615 GGCTAGGATTCCGGCAACAG 60.816 60.000 19.78 5.14 0.00 3.16
290 291 1.223487 GGCTAGGATTCCGGCAACA 59.777 57.895 19.78 0.00 0.00 3.33
291 292 0.756903 TAGGCTAGGATTCCGGCAAC 59.243 55.000 19.78 8.23 0.00 4.17
292 293 1.140252 GTTAGGCTAGGATTCCGGCAA 59.860 52.381 19.78 8.41 0.00 4.52
293 294 0.756903 GTTAGGCTAGGATTCCGGCA 59.243 55.000 19.78 0.00 0.00 5.69
294 295 0.035036 GGTTAGGCTAGGATTCCGGC 59.965 60.000 13.01 13.01 0.00 6.13
295 296 0.317479 CGGTTAGGCTAGGATTCCGG 59.683 60.000 0.00 0.00 34.05 5.14
296 297 1.325355 TCGGTTAGGCTAGGATTCCG 58.675 55.000 13.64 13.64 38.16 4.30
297 298 2.234168 GGATCGGTTAGGCTAGGATTCC 59.766 54.545 0.00 0.00 0.00 3.01
298 299 2.897969 TGGATCGGTTAGGCTAGGATTC 59.102 50.000 0.00 0.00 0.00 2.52
299 300 2.633481 GTGGATCGGTTAGGCTAGGATT 59.367 50.000 0.00 0.00 0.00 3.01
300 301 2.249139 GTGGATCGGTTAGGCTAGGAT 58.751 52.381 0.00 0.00 0.00 3.24
301 302 1.063492 TGTGGATCGGTTAGGCTAGGA 60.063 52.381 0.00 0.00 0.00 2.94
302 303 1.410004 TGTGGATCGGTTAGGCTAGG 58.590 55.000 0.00 0.00 0.00 3.02
303 304 3.118738 ACTTTGTGGATCGGTTAGGCTAG 60.119 47.826 0.00 0.00 0.00 3.42
304 305 2.835764 ACTTTGTGGATCGGTTAGGCTA 59.164 45.455 0.00 0.00 0.00 3.93
305 306 1.628846 ACTTTGTGGATCGGTTAGGCT 59.371 47.619 0.00 0.00 0.00 4.58
306 307 2.007608 GACTTTGTGGATCGGTTAGGC 58.992 52.381 0.00 0.00 0.00 3.93
307 308 3.611766 AGACTTTGTGGATCGGTTAGG 57.388 47.619 0.00 0.00 0.00 2.69
308 309 5.902681 TGATAGACTTTGTGGATCGGTTAG 58.097 41.667 0.00 0.00 0.00 2.34
309 310 5.925506 TGATAGACTTTGTGGATCGGTTA 57.074 39.130 0.00 0.00 0.00 2.85
310 311 4.819105 TGATAGACTTTGTGGATCGGTT 57.181 40.909 0.00 0.00 0.00 4.44
311 312 5.118990 CAATGATAGACTTTGTGGATCGGT 58.881 41.667 0.00 0.00 0.00 4.69
312 313 4.512944 CCAATGATAGACTTTGTGGATCGG 59.487 45.833 0.00 0.00 33.57 4.18
313 314 4.024556 GCCAATGATAGACTTTGTGGATCG 60.025 45.833 0.00 0.00 33.57 3.69
314 315 4.883585 TGCCAATGATAGACTTTGTGGATC 59.116 41.667 0.00 0.00 33.57 3.36
315 316 4.858850 TGCCAATGATAGACTTTGTGGAT 58.141 39.130 0.00 0.00 33.57 3.41
316 317 4.299586 TGCCAATGATAGACTTTGTGGA 57.700 40.909 0.00 0.00 33.57 4.02
317 318 4.460382 AGTTGCCAATGATAGACTTTGTGG 59.540 41.667 0.00 0.00 33.57 4.17
318 319 5.633830 AGTTGCCAATGATAGACTTTGTG 57.366 39.130 0.00 0.00 33.57 3.33
319 320 4.393062 CGAGTTGCCAATGATAGACTTTGT 59.607 41.667 0.00 0.00 33.57 2.83
320 321 4.728882 GCGAGTTGCCAATGATAGACTTTG 60.729 45.833 0.00 0.00 37.76 2.77
321 322 3.375299 GCGAGTTGCCAATGATAGACTTT 59.625 43.478 0.00 0.00 37.76 2.66
322 323 2.939103 GCGAGTTGCCAATGATAGACTT 59.061 45.455 0.00 0.00 37.76 3.01
323 324 2.555199 GCGAGTTGCCAATGATAGACT 58.445 47.619 0.00 0.00 37.76 3.24
335 336 0.389426 TCTAACTTCCGGCGAGTTGC 60.389 55.000 24.62 0.00 45.38 4.17
336 337 1.630148 CTCTAACTTCCGGCGAGTTG 58.370 55.000 24.62 17.07 37.84 3.16
337 338 0.531200 CCTCTAACTTCCGGCGAGTT 59.469 55.000 21.53 21.53 40.28 3.01
338 339 0.611340 ACCTCTAACTTCCGGCGAGT 60.611 55.000 9.30 0.73 0.00 4.18
339 340 0.100861 GACCTCTAACTTCCGGCGAG 59.899 60.000 9.30 0.00 0.00 5.03
340 341 0.323178 AGACCTCTAACTTCCGGCGA 60.323 55.000 9.30 0.00 0.00 5.54
341 342 0.531200 AAGACCTCTAACTTCCGGCG 59.469 55.000 0.00 0.00 0.00 6.46
342 343 2.742589 CAAAAGACCTCTAACTTCCGGC 59.257 50.000 0.00 0.00 0.00 6.13
343 344 3.007614 TCCAAAAGACCTCTAACTTCCGG 59.992 47.826 0.00 0.00 0.00 5.14
344 345 3.995048 GTCCAAAAGACCTCTAACTTCCG 59.005 47.826 0.00 0.00 39.84 4.30
367 368 1.273606 TCGGTCTTCTGCCTTCTGAAG 59.726 52.381 10.46 10.46 44.65 3.02
368 369 1.273606 CTCGGTCTTCTGCCTTCTGAA 59.726 52.381 0.00 0.00 0.00 3.02
369 370 0.891373 CTCGGTCTTCTGCCTTCTGA 59.109 55.000 0.00 0.00 0.00 3.27
370 371 0.891373 TCTCGGTCTTCTGCCTTCTG 59.109 55.000 0.00 0.00 0.00 3.02
371 372 0.892063 GTCTCGGTCTTCTGCCTTCT 59.108 55.000 0.00 0.00 0.00 2.85
372 373 0.603569 TGTCTCGGTCTTCTGCCTTC 59.396 55.000 0.00 0.00 0.00 3.46
373 374 1.205893 GATGTCTCGGTCTTCTGCCTT 59.794 52.381 0.00 0.00 0.00 4.35
374 375 0.820871 GATGTCTCGGTCTTCTGCCT 59.179 55.000 0.00 0.00 0.00 4.75
375 376 0.820871 AGATGTCTCGGTCTTCTGCC 59.179 55.000 0.00 0.00 0.00 4.85
376 377 2.266554 CAAGATGTCTCGGTCTTCTGC 58.733 52.381 0.00 0.00 32.60 4.26
377 378 3.584406 ACAAGATGTCTCGGTCTTCTG 57.416 47.619 0.00 0.00 32.60 3.02
378 379 4.282195 AGAAACAAGATGTCTCGGTCTTCT 59.718 41.667 0.00 0.00 32.60 2.85
379 380 4.561105 AGAAACAAGATGTCTCGGTCTTC 58.439 43.478 0.00 0.00 32.60 2.87
380 381 4.608948 AGAAACAAGATGTCTCGGTCTT 57.391 40.909 0.00 0.00 35.15 3.01
381 382 5.654650 AGATAGAAACAAGATGTCTCGGTCT 59.345 40.000 0.00 0.00 0.00 3.85
382 383 5.746245 CAGATAGAAACAAGATGTCTCGGTC 59.254 44.000 0.00 0.00 0.00 4.79
383 384 5.419155 TCAGATAGAAACAAGATGTCTCGGT 59.581 40.000 0.00 0.00 0.00 4.69
384 385 5.895928 TCAGATAGAAACAAGATGTCTCGG 58.104 41.667 0.00 0.00 0.00 4.63
385 386 7.818493 TTTCAGATAGAAACAAGATGTCTCG 57.182 36.000 0.00 0.00 41.17 4.04
407 408 8.764287 GCAGCTTTTGACTACACAATTTTATTT 58.236 29.630 0.00 0.00 0.00 1.40
408 409 7.925483 TGCAGCTTTTGACTACACAATTTTATT 59.075 29.630 0.00 0.00 0.00 1.40
409 410 7.432869 TGCAGCTTTTGACTACACAATTTTAT 58.567 30.769 0.00 0.00 0.00 1.40
410 411 6.800543 TGCAGCTTTTGACTACACAATTTTA 58.199 32.000 0.00 0.00 0.00 1.52
411 412 5.659463 TGCAGCTTTTGACTACACAATTTT 58.341 33.333 0.00 0.00 0.00 1.82
412 413 5.261209 TGCAGCTTTTGACTACACAATTT 57.739 34.783 0.00 0.00 0.00 1.82
413 414 4.794003 GCTGCAGCTTTTGACTACACAATT 60.794 41.667 31.33 0.00 38.21 2.32
414 415 3.304928 GCTGCAGCTTTTGACTACACAAT 60.305 43.478 31.33 0.00 38.21 2.71
415 416 2.033299 GCTGCAGCTTTTGACTACACAA 59.967 45.455 31.33 0.00 38.21 3.33
416 417 1.603802 GCTGCAGCTTTTGACTACACA 59.396 47.619 31.33 0.00 38.21 3.72
417 418 1.398960 CGCTGCAGCTTTTGACTACAC 60.399 52.381 34.22 3.10 39.32 2.90
418 419 0.867746 CGCTGCAGCTTTTGACTACA 59.132 50.000 34.22 0.00 39.32 2.74
419 420 0.868406 ACGCTGCAGCTTTTGACTAC 59.132 50.000 34.22 3.85 39.32 2.73
420 421 1.593196 AACGCTGCAGCTTTTGACTA 58.407 45.000 34.22 0.00 39.32 2.59
421 422 0.740737 AAACGCTGCAGCTTTTGACT 59.259 45.000 34.27 16.53 40.33 3.41
422 423 1.518515 GAAAACGCTGCAGCTTTTGAC 59.481 47.619 35.07 27.83 40.85 3.18
423 424 1.838913 GAAAACGCTGCAGCTTTTGA 58.161 45.000 35.07 0.00 40.85 2.69
424 425 0.499761 CGAAAACGCTGCAGCTTTTG 59.500 50.000 35.07 27.31 40.85 2.44
425 426 0.594796 CCGAAAACGCTGCAGCTTTT 60.595 50.000 30.96 30.96 43.05 2.27
426 427 1.008538 CCGAAAACGCTGCAGCTTT 60.009 52.632 34.22 28.93 39.32 3.51
427 428 2.186826 ACCGAAAACGCTGCAGCTT 61.187 52.632 34.22 24.68 39.32 3.74
428 429 2.591715 ACCGAAAACGCTGCAGCT 60.592 55.556 34.22 17.66 39.32 4.24
429 430 2.427410 CACCGAAAACGCTGCAGC 60.427 61.111 29.12 29.12 37.78 5.25
430 431 2.175184 CTCCACCGAAAACGCTGCAG 62.175 60.000 10.11 10.11 0.00 4.41
431 432 2.203084 TCCACCGAAAACGCTGCA 60.203 55.556 0.00 0.00 0.00 4.41
432 433 1.298859 ATCTCCACCGAAAACGCTGC 61.299 55.000 0.00 0.00 0.00 5.25
433 434 1.135972 CAATCTCCACCGAAAACGCTG 60.136 52.381 0.00 0.00 0.00 5.18
434 435 1.156736 CAATCTCCACCGAAAACGCT 58.843 50.000 0.00 0.00 0.00 5.07
435 436 0.168128 CCAATCTCCACCGAAAACGC 59.832 55.000 0.00 0.00 0.00 4.84
436 437 0.802494 CCCAATCTCCACCGAAAACG 59.198 55.000 0.00 0.00 0.00 3.60
437 438 1.810755 GTCCCAATCTCCACCGAAAAC 59.189 52.381 0.00 0.00 0.00 2.43
438 439 1.702957 AGTCCCAATCTCCACCGAAAA 59.297 47.619 0.00 0.00 0.00 2.29
439 440 1.358152 AGTCCCAATCTCCACCGAAA 58.642 50.000 0.00 0.00 0.00 3.46
440 441 1.358152 AAGTCCCAATCTCCACCGAA 58.642 50.000 0.00 0.00 0.00 4.30
441 442 1.829222 GTAAGTCCCAATCTCCACCGA 59.171 52.381 0.00 0.00 0.00 4.69
442 443 1.134491 GGTAAGTCCCAATCTCCACCG 60.134 57.143 0.00 0.00 0.00 4.94
443 444 1.913419 TGGTAAGTCCCAATCTCCACC 59.087 52.381 0.00 0.00 34.77 4.61
444 445 3.244770 TGTTGGTAAGTCCCAATCTCCAC 60.245 47.826 0.00 0.00 45.79 4.02
445 446 2.983192 TGTTGGTAAGTCCCAATCTCCA 59.017 45.455 0.00 0.00 45.79 3.86
446 447 3.713826 TGTTGGTAAGTCCCAATCTCC 57.286 47.619 0.00 0.00 45.79 3.71
447 448 4.396166 CACATGTTGGTAAGTCCCAATCTC 59.604 45.833 0.00 0.00 45.79 2.75
448 449 4.335416 CACATGTTGGTAAGTCCCAATCT 58.665 43.478 0.00 0.00 45.79 2.40
449 450 3.443681 CCACATGTTGGTAAGTCCCAATC 59.556 47.826 0.00 0.00 45.79 2.67
450 451 3.430453 CCACATGTTGGTAAGTCCCAAT 58.570 45.455 0.00 0.00 45.79 3.16
451 452 2.489985 CCCACATGTTGGTAAGTCCCAA 60.490 50.000 7.82 0.00 45.25 4.12
452 453 1.074727 CCCACATGTTGGTAAGTCCCA 59.925 52.381 7.82 0.00 45.25 4.37
453 454 1.834188 CCCACATGTTGGTAAGTCCC 58.166 55.000 7.82 0.00 45.25 4.46
454 455 1.173913 GCCCACATGTTGGTAAGTCC 58.826 55.000 16.79 0.00 45.25 3.85
455 456 2.084546 GAGCCCACATGTTGGTAAGTC 58.915 52.381 16.79 6.05 45.25 3.01
456 457 1.610624 CGAGCCCACATGTTGGTAAGT 60.611 52.381 16.79 0.57 45.25 2.24
457 458 1.086696 CGAGCCCACATGTTGGTAAG 58.913 55.000 16.79 5.31 45.25 2.34
458 459 0.958382 GCGAGCCCACATGTTGGTAA 60.958 55.000 16.79 0.00 45.25 2.85
459 460 1.376683 GCGAGCCCACATGTTGGTA 60.377 57.895 16.79 0.00 45.25 3.25
460 461 2.672996 GCGAGCCCACATGTTGGT 60.673 61.111 16.79 7.15 45.25 3.67
461 462 2.672651 TGCGAGCCCACATGTTGG 60.673 61.111 11.64 11.64 46.47 3.77
462 463 2.872557 CTGCGAGCCCACATGTTG 59.127 61.111 0.00 0.00 0.00 3.33
463 464 3.058160 GCTGCGAGCCCACATGTT 61.058 61.111 0.00 0.00 34.48 2.71
464 465 4.025858 AGCTGCGAGCCCACATGT 62.026 61.111 0.00 0.00 43.77 3.21
465 466 3.506096 CAGCTGCGAGCCCACATG 61.506 66.667 0.00 0.00 43.77 3.21
466 467 4.025858 ACAGCTGCGAGCCCACAT 62.026 61.111 15.27 0.00 43.77 3.21
467 468 4.994471 CACAGCTGCGAGCCCACA 62.994 66.667 15.27 0.00 43.77 4.17
468 469 3.965539 ATCACAGCTGCGAGCCCAC 62.966 63.158 15.27 0.00 43.77 4.61
469 470 3.709633 ATCACAGCTGCGAGCCCA 61.710 61.111 15.27 0.00 43.77 5.36
470 471 3.200593 CATCACAGCTGCGAGCCC 61.201 66.667 15.27 0.00 43.77 5.19
471 472 2.578163 TACCATCACAGCTGCGAGCC 62.578 60.000 15.27 0.00 43.77 4.70
472 473 1.150567 CTACCATCACAGCTGCGAGC 61.151 60.000 15.27 0.47 42.84 5.03
473 474 0.457443 TCTACCATCACAGCTGCGAG 59.543 55.000 15.27 4.15 0.00 5.03
474 475 0.457443 CTCTACCATCACAGCTGCGA 59.543 55.000 15.27 10.95 0.00 5.10
475 476 0.529337 CCTCTACCATCACAGCTGCG 60.529 60.000 15.27 3.95 0.00 5.18
476 477 0.826715 TCCTCTACCATCACAGCTGC 59.173 55.000 15.27 0.00 0.00 5.25
477 478 2.499289 ACTTCCTCTACCATCACAGCTG 59.501 50.000 13.48 13.48 0.00 4.24
478 479 2.499289 CACTTCCTCTACCATCACAGCT 59.501 50.000 0.00 0.00 0.00 4.24
479 480 2.898705 CACTTCCTCTACCATCACAGC 58.101 52.381 0.00 0.00 0.00 4.40
480 481 2.499289 AGCACTTCCTCTACCATCACAG 59.501 50.000 0.00 0.00 0.00 3.66
481 482 2.234661 CAGCACTTCCTCTACCATCACA 59.765 50.000 0.00 0.00 0.00 3.58
482 483 2.419297 CCAGCACTTCCTCTACCATCAC 60.419 54.545 0.00 0.00 0.00 3.06
483 484 1.833630 CCAGCACTTCCTCTACCATCA 59.166 52.381 0.00 0.00 0.00 3.07
484 485 2.111384 TCCAGCACTTCCTCTACCATC 58.889 52.381 0.00 0.00 0.00 3.51
485 486 2.254152 TCCAGCACTTCCTCTACCAT 57.746 50.000 0.00 0.00 0.00 3.55
486 487 2.024176 TTCCAGCACTTCCTCTACCA 57.976 50.000 0.00 0.00 0.00 3.25
487 488 3.274288 CAATTCCAGCACTTCCTCTACC 58.726 50.000 0.00 0.00 0.00 3.18
488 489 2.680339 GCAATTCCAGCACTTCCTCTAC 59.320 50.000 0.00 0.00 0.00 2.59
489 490 2.305635 TGCAATTCCAGCACTTCCTCTA 59.694 45.455 0.00 0.00 37.02 2.43
490 491 1.074405 TGCAATTCCAGCACTTCCTCT 59.926 47.619 0.00 0.00 37.02 3.69
491 492 1.538047 TGCAATTCCAGCACTTCCTC 58.462 50.000 0.00 0.00 37.02 3.71
492 493 1.999648 TTGCAATTCCAGCACTTCCT 58.000 45.000 0.00 0.00 42.54 3.36
493 494 2.028748 ACATTGCAATTCCAGCACTTCC 60.029 45.455 9.83 0.00 42.54 3.46
494 495 3.308438 ACATTGCAATTCCAGCACTTC 57.692 42.857 9.83 0.00 42.54 3.01
495 496 3.756933 AACATTGCAATTCCAGCACTT 57.243 38.095 9.83 0.00 42.54 3.16
496 497 3.756933 AAACATTGCAATTCCAGCACT 57.243 38.095 9.83 0.00 42.54 4.40
497 498 3.058777 CCAAAACATTGCAATTCCAGCAC 60.059 43.478 9.83 0.00 42.54 4.40
498 499 3.139850 CCAAAACATTGCAATTCCAGCA 58.860 40.909 9.83 0.00 40.85 4.41
499 500 3.401182 TCCAAAACATTGCAATTCCAGC 58.599 40.909 9.83 0.00 0.00 4.85
500 501 4.885413 TCTCCAAAACATTGCAATTCCAG 58.115 39.130 9.83 0.59 0.00 3.86
501 502 4.952071 TCTCCAAAACATTGCAATTCCA 57.048 36.364 9.83 0.00 0.00 3.53
502 503 5.178067 CACTTCTCCAAAACATTGCAATTCC 59.822 40.000 9.83 0.00 0.00 3.01
503 504 5.178067 CCACTTCTCCAAAACATTGCAATTC 59.822 40.000 9.83 0.00 0.00 2.17
504 505 5.058490 CCACTTCTCCAAAACATTGCAATT 58.942 37.500 9.83 0.00 0.00 2.32
505 506 4.101430 ACCACTTCTCCAAAACATTGCAAT 59.899 37.500 5.99 5.99 0.00 3.56
506 507 3.450457 ACCACTTCTCCAAAACATTGCAA 59.550 39.130 0.00 0.00 0.00 4.08
507 508 3.030291 ACCACTTCTCCAAAACATTGCA 58.970 40.909 0.00 0.00 0.00 4.08
508 509 3.319122 AGACCACTTCTCCAAAACATTGC 59.681 43.478 0.00 0.00 0.00 3.56
509 510 5.997746 TCTAGACCACTTCTCCAAAACATTG 59.002 40.000 0.00 0.00 35.55 2.82
510 511 6.187727 TCTAGACCACTTCTCCAAAACATT 57.812 37.500 0.00 0.00 35.55 2.71
511 512 5.825593 TCTAGACCACTTCTCCAAAACAT 57.174 39.130 0.00 0.00 35.55 2.71
512 513 5.071788 ACATCTAGACCACTTCTCCAAAACA 59.928 40.000 0.00 0.00 35.55 2.83
513 514 5.409826 CACATCTAGACCACTTCTCCAAAAC 59.590 44.000 0.00 0.00 35.55 2.43
514 515 5.513094 CCACATCTAGACCACTTCTCCAAAA 60.513 44.000 0.00 0.00 35.55 2.44
515 516 4.020218 CCACATCTAGACCACTTCTCCAAA 60.020 45.833 0.00 0.00 35.55 3.28
516 517 3.515502 CCACATCTAGACCACTTCTCCAA 59.484 47.826 0.00 0.00 35.55 3.53
517 518 3.099905 CCACATCTAGACCACTTCTCCA 58.900 50.000 0.00 0.00 35.55 3.86
518 519 3.366396 TCCACATCTAGACCACTTCTCC 58.634 50.000 0.00 0.00 35.55 3.71
519 520 3.181480 GCTCCACATCTAGACCACTTCTC 60.181 52.174 0.00 0.00 35.55 2.87
520 521 2.763448 GCTCCACATCTAGACCACTTCT 59.237 50.000 0.00 0.00 38.51 2.85
521 522 2.763448 AGCTCCACATCTAGACCACTTC 59.237 50.000 0.00 0.00 0.00 3.01
522 523 2.826488 AGCTCCACATCTAGACCACTT 58.174 47.619 0.00 0.00 0.00 3.16
523 524 2.541233 AGCTCCACATCTAGACCACT 57.459 50.000 0.00 0.00 0.00 4.00
524 525 4.737855 TTTAGCTCCACATCTAGACCAC 57.262 45.455 0.00 0.00 0.00 4.16
525 526 6.611642 AGTTATTTAGCTCCACATCTAGACCA 59.388 38.462 0.00 0.00 0.00 4.02
526 527 7.056844 AGTTATTTAGCTCCACATCTAGACC 57.943 40.000 0.00 0.00 0.00 3.85
527 528 8.852135 AGTAGTTATTTAGCTCCACATCTAGAC 58.148 37.037 0.00 0.00 0.00 2.59
528 529 8.998277 AGTAGTTATTTAGCTCCACATCTAGA 57.002 34.615 0.00 0.00 0.00 2.43
529 530 8.301002 GGAGTAGTTATTTAGCTCCACATCTAG 58.699 40.741 0.00 0.00 43.70 2.43
530 531 8.179509 GGAGTAGTTATTTAGCTCCACATCTA 57.820 38.462 0.00 0.00 43.70 1.98
531 532 7.056844 GGAGTAGTTATTTAGCTCCACATCT 57.943 40.000 0.00 0.00 43.70 2.90
537 538 9.998106 TGATATTTGGAGTAGTTATTTAGCTCC 57.002 33.333 0.00 0.00 44.31 4.70
566 567 8.429641 CCACTTTAGGAGGCTTTATATGTTAGA 58.570 37.037 0.00 0.00 0.00 2.10
567 568 8.211629 ACCACTTTAGGAGGCTTTATATGTTAG 58.788 37.037 0.00 0.00 0.00 2.34
568 569 8.097791 ACCACTTTAGGAGGCTTTATATGTTA 57.902 34.615 0.00 0.00 0.00 2.41
569 570 6.970191 ACCACTTTAGGAGGCTTTATATGTT 58.030 36.000 0.00 0.00 0.00 2.71
570 571 6.576778 ACCACTTTAGGAGGCTTTATATGT 57.423 37.500 0.00 0.00 0.00 2.29
571 572 7.736893 ACTACCACTTTAGGAGGCTTTATATG 58.263 38.462 0.00 0.00 0.00 1.78
572 573 7.790314 AGACTACCACTTTAGGAGGCTTTATAT 59.210 37.037 0.00 0.00 0.00 0.86
573 574 7.130775 AGACTACCACTTTAGGAGGCTTTATA 58.869 38.462 0.00 0.00 0.00 0.98
574 575 5.965091 AGACTACCACTTTAGGAGGCTTTAT 59.035 40.000 0.00 0.00 0.00 1.40
575 576 5.339477 AGACTACCACTTTAGGAGGCTTTA 58.661 41.667 0.00 0.00 0.00 1.85
576 577 4.168883 AGACTACCACTTTAGGAGGCTTT 58.831 43.478 0.00 0.00 0.00 3.51
577 578 3.792515 AGACTACCACTTTAGGAGGCTT 58.207 45.455 0.00 0.00 0.00 4.35
578 579 3.476485 AGACTACCACTTTAGGAGGCT 57.524 47.619 0.00 0.00 0.00 4.58
579 580 4.465305 TGTTAGACTACCACTTTAGGAGGC 59.535 45.833 0.00 0.00 0.00 4.70
580 581 6.793505 ATGTTAGACTACCACTTTAGGAGG 57.206 41.667 0.00 0.00 0.00 4.30
586 587 8.769359 AGGCTTTATATGTTAGACTACCACTTT 58.231 33.333 0.00 0.00 0.00 2.66
587 588 8.320338 AGGCTTTATATGTTAGACTACCACTT 57.680 34.615 0.00 0.00 0.00 3.16
588 589 7.015389 GGAGGCTTTATATGTTAGACTACCACT 59.985 40.741 0.00 0.00 0.00 4.00
589 590 7.015389 AGGAGGCTTTATATGTTAGACTACCAC 59.985 40.741 0.00 0.00 27.01 4.16
590 591 7.073854 AGGAGGCTTTATATGTTAGACTACCA 58.926 38.462 0.00 0.00 27.01 3.25
591 592 7.541916 AGGAGGCTTTATATGTTAGACTACC 57.458 40.000 0.00 0.00 27.01 3.18
592 593 9.517868 TCTAGGAGGCTTTATATGTTAGACTAC 57.482 37.037 0.00 0.00 0.00 2.73
593 594 9.742144 CTCTAGGAGGCTTTATATGTTAGACTA 57.258 37.037 0.00 0.00 0.00 2.59
594 595 8.228905 ACTCTAGGAGGCTTTATATGTTAGACT 58.771 37.037 0.00 0.00 33.35 3.24
633 634 3.357079 CGTGCGCTCAAGGCCTTT 61.357 61.111 17.61 0.00 37.74 3.11
1139 1180 4.936823 GTGTCGTCGCACACCCGT 62.937 66.667 13.60 0.00 40.84 5.28
1442 1519 3.366883 GCCGCATGAAGAGATAGGTAGAG 60.367 52.174 0.00 0.00 0.00 2.43
1447 1524 0.321122 GGGCCGCATGAAGAGATAGG 60.321 60.000 0.00 0.00 0.00 2.57
1777 1855 8.453238 TGCAGGAAATTAAACTGTAACTTACA 57.547 30.769 1.67 1.67 37.13 2.41
2070 2150 4.889409 TGAGAGTTTTCTTCAATTGCAGGT 59.111 37.500 5.23 0.00 32.53 4.00
2108 2188 0.393132 GAAAAGGAGGAAGAGGCGGG 60.393 60.000 0.00 0.00 0.00 6.13
2494 2574 2.434428 AGCCTCAAGAAAGCATCTGTG 58.566 47.619 0.00 0.00 38.79 3.66
3042 3132 4.701765 AGCAGGATAGTATTTGCTGTCAG 58.298 43.478 17.43 0.00 44.58 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.