Multiple sequence alignment - TraesCS5A01G412200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G412200 chr5A 100.000 3522 0 0 1 3522 600505734 600502213 0.000000e+00 6505.0
1 TraesCS5A01G412200 chr5A 84.579 1485 141 43 1631 3094 601256797 601255380 0.000000e+00 1393.0
2 TraesCS5A01G412200 chr5A 87.160 1028 92 22 2088 3108 601341931 601340937 0.000000e+00 1131.0
3 TraesCS5A01G412200 chr5A 82.676 1166 146 27 2034 3188 601086810 601085690 0.000000e+00 983.0
4 TraesCS5A01G412200 chr5A 81.762 976 112 33 2231 3188 600950217 600949290 0.000000e+00 756.0
5 TraesCS5A01G412200 chr5A 91.833 502 39 1 2134 2635 601166999 601166500 0.000000e+00 699.0
6 TraesCS5A01G412200 chr5A 81.446 830 106 22 2258 3067 601483988 601483187 1.380000e-178 636.0
7 TraesCS5A01G412200 chr5A 83.945 436 46 18 826 1246 601258384 601257958 2.550000e-106 396.0
8 TraesCS5A01G412200 chr5A 83.054 478 38 23 816 1279 601343640 601343192 9.160000e-106 394.0
9 TraesCS5A01G412200 chr5A 82.196 337 37 17 2862 3187 601155977 601155653 5.800000e-68 268.0
10 TraesCS5A01G412200 chr5A 77.844 501 53 21 1371 1859 601342394 601341940 1.250000e-64 257.0
11 TraesCS5A01G412200 chr5A 83.513 279 40 6 3241 3517 601340850 601340576 4.510000e-64 255.0
12 TraesCS5A01G412200 chr5A 81.429 280 46 5 3243 3519 601255282 601255006 1.270000e-54 224.0
13 TraesCS5A01G412200 chr5A 81.132 212 25 7 1405 1602 601168401 601168191 4.710000e-34 156.0
14 TraesCS5A01G412200 chr5A 89.474 114 9 3 1371 1482 600895787 600895675 1.320000e-29 141.0
15 TraesCS5A01G412200 chr5A 93.243 74 5 0 1034 1107 601098849 601098776 3.720000e-20 110.0
16 TraesCS5A01G412200 chr5A 80.240 167 14 10 1667 1830 601086971 601086821 1.340000e-19 108.0
17 TraesCS5A01G412200 chr5A 93.617 47 2 1 3192 3237 600502478 600502432 6.310000e-08 69.4
18 TraesCS5A01G412200 chr5A 93.617 47 2 1 3257 3303 600502543 600502498 6.310000e-08 69.4
19 TraesCS5A01G412200 chr5D 90.502 2032 97 29 1365 3354 481565037 481563060 0.000000e+00 2595.0
20 TraesCS5A01G412200 chr5D 87.573 1022 83 19 2092 3098 481761195 481760203 0.000000e+00 1144.0
21 TraesCS5A01G412200 chr5D 84.089 1213 132 24 1684 2873 481643840 481642666 0.000000e+00 1114.0
22 TraesCS5A01G412200 chr5D 88.258 528 23 16 759 1279 481565784 481565289 2.340000e-166 595.0
23 TraesCS5A01G412200 chr5D 83.817 482 35 26 819 1279 481762950 481762491 5.440000e-113 418.0
24 TraesCS5A01G412200 chr5D 82.043 323 56 2 3191 3512 481738880 481738559 1.250000e-69 274.0
25 TraesCS5A01G412200 chr5D 81.672 311 33 17 2862 3159 481749490 481749191 1.630000e-58 237.0
26 TraesCS5A01G412200 chr5D 85.279 197 17 8 1666 1859 481761426 481761239 3.590000e-45 193.0
27 TraesCS5A01G412200 chr5D 89.286 84 9 0 3191 3274 481737562 481737479 4.810000e-19 106.0
28 TraesCS5A01G412200 chr5B 93.976 1245 61 9 2004 3237 590183636 590182395 0.000000e+00 1871.0
29 TraesCS5A01G412200 chr5B 87.043 1011 86 18 2101 3098 590806043 590805065 0.000000e+00 1099.0
30 TraesCS5A01G412200 chr5B 88.417 777 78 8 1786 2556 590256785 590256015 0.000000e+00 926.0
31 TraesCS5A01G412200 chr5B 92.385 499 20 8 759 1245 590184960 590184468 0.000000e+00 695.0
32 TraesCS5A01G412200 chr5B 81.737 668 69 24 1398 2047 590806669 590806037 3.140000e-140 508.0
33 TraesCS5A01G412200 chr5B 85.646 418 39 4 872 1279 590807904 590807498 1.510000e-113 420.0
34 TraesCS5A01G412200 chr5B 95.726 234 9 1 1 233 681011862 681012095 3.320000e-100 375.0
35 TraesCS5A01G412200 chr5B 95.299 234 10 1 1 233 473905936 473905703 1.540000e-98 370.0
36 TraesCS5A01G412200 chr5B 94.872 234 11 1 1 233 6477663 6477896 7.180000e-97 364.0
37 TraesCS5A01G412200 chr5B 85.083 362 44 5 231 589 590185375 590185021 9.290000e-96 361.0
38 TraesCS5A01G412200 chr5B 94.421 233 12 1 1 233 538586740 538586509 1.200000e-94 357.0
39 TraesCS5A01G412200 chr5B 92.050 239 14 2 1748 1982 590184005 590183768 7.290000e-87 331.0
40 TraesCS5A01G412200 chr5B 95.858 169 7 0 3232 3400 590181900 590181732 1.250000e-69 274.0
41 TraesCS5A01G412200 chr5B 91.579 190 16 0 1034 1223 590530762 590530573 2.700000e-66 263.0
42 TraesCS5A01G412200 chr5B 97.902 143 3 0 1365 1507 590184178 590184036 7.550000e-62 248.0
43 TraesCS5A01G412200 chr5B 82.857 280 37 8 3242 3517 590804968 590804696 1.260000e-59 241.0
44 TraesCS5A01G412200 chr5B 88.571 140 16 0 1047 1186 590456604 590456465 1.680000e-38 171.0
45 TraesCS5A01G412200 chr5B 85.841 113 13 3 1371 1482 590391652 590391542 2.220000e-22 117.0
46 TraesCS5A01G412200 chr5B 97.368 38 1 0 3200 3237 590804948 590804911 8.160000e-07 65.8
47 TraesCS5A01G412200 chrUn 94.872 234 11 1 1 233 76092703 76092470 7.180000e-97 364.0
48 TraesCS5A01G412200 chr6A 94.872 234 11 1 1 233 164264928 164265161 7.180000e-97 364.0
49 TraesCS5A01G412200 chr6B 94.850 233 10 2 2 233 123217792 123217561 2.580000e-96 363.0
50 TraesCS5A01G412200 chr2B 94.444 234 12 1 1 233 645829527 645829294 3.340000e-95 359.0
51 TraesCS5A01G412200 chr3A 93.333 240 15 1 1 240 181791182 181791420 1.560000e-93 353.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G412200 chr5A 600502213 600505734 3521 True 2214.60 6505 95.744667 1 3522 3 chr5A.!!$R6 3521
1 TraesCS5A01G412200 chr5A 600949290 600950217 927 True 756.00 756 81.762000 2231 3188 1 chr5A.!!$R2 957
2 TraesCS5A01G412200 chr5A 601255006 601258384 3378 True 671.00 1393 83.317667 826 3519 3 chr5A.!!$R9 2693
3 TraesCS5A01G412200 chr5A 601483187 601483988 801 True 636.00 636 81.446000 2258 3067 1 chr5A.!!$R5 809
4 TraesCS5A01G412200 chr5A 601085690 601086971 1281 True 545.50 983 81.458000 1667 3188 2 chr5A.!!$R7 1521
5 TraesCS5A01G412200 chr5A 601340576 601343640 3064 True 509.25 1131 82.892750 816 3517 4 chr5A.!!$R10 2701
6 TraesCS5A01G412200 chr5A 601166500 601168401 1901 True 427.50 699 86.482500 1405 2635 2 chr5A.!!$R8 1230
7 TraesCS5A01G412200 chr5D 481563060 481565784 2724 True 1595.00 2595 89.380000 759 3354 2 chr5D.!!$R3 2595
8 TraesCS5A01G412200 chr5D 481642666 481643840 1174 True 1114.00 1114 84.089000 1684 2873 1 chr5D.!!$R1 1189
9 TraesCS5A01G412200 chr5D 481760203 481762950 2747 True 585.00 1144 85.556333 819 3098 3 chr5D.!!$R5 2279
10 TraesCS5A01G412200 chr5B 590256015 590256785 770 True 926.00 926 88.417000 1786 2556 1 chr5B.!!$R3 770
11 TraesCS5A01G412200 chr5B 590181732 590185375 3643 True 630.00 1871 92.875667 231 3400 6 chr5B.!!$R7 3169
12 TraesCS5A01G412200 chr5B 590804696 590807904 3208 True 466.76 1099 86.930200 872 3517 5 chr5B.!!$R8 2645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.032403 CGTGACACAAACCGGGACTA 59.968 55.0 6.32 0.00 0.00 2.59 F
1302 1373 0.030773 CCGCGCTCTGCAGAGTTATA 59.969 55.0 37.25 7.96 46.97 0.98 F
1347 1435 1.061799 GAGCGAGCAATGCGTTTGTG 61.062 55.0 0.00 0.00 37.65 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1646 2698 1.066430 GGTCATCGCAGGTGGAACTTA 60.066 52.381 0.00 0.0 36.74 2.24 R
2287 4478 0.039708 GTTGCTGAGCTTCTGTTGCC 60.040 55.000 5.83 0.0 0.00 4.52 R
2637 4844 0.527113 CCATCATGGCGCAAAGTGAA 59.473 50.000 10.83 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.997315 CGAGGTGGACCAGCCTGA 60.997 66.667 20.02 0.00 38.89 3.86
18 19 2.665603 GAGGTGGACCAGCCTGAC 59.334 66.667 20.02 6.10 38.89 3.51
19 20 3.302347 GAGGTGGACCAGCCTGACG 62.302 68.421 20.02 0.00 38.89 4.35
20 21 4.394712 GGTGGACCAGCCTGACGG 62.395 72.222 12.93 0.00 37.63 4.79
63 64 2.202676 GGCGACGAGGAGCAGAAG 60.203 66.667 0.00 0.00 34.54 2.85
64 65 2.202676 GCGACGAGGAGCAGAAGG 60.203 66.667 0.00 0.00 0.00 3.46
65 66 2.202676 CGACGAGGAGCAGAAGGC 60.203 66.667 0.00 0.00 45.30 4.35
81 82 4.430765 GCGTCGGGGCGAGAAGAA 62.431 66.667 0.00 0.00 36.23 2.52
82 83 2.260434 CGTCGGGGCGAGAAGAAA 59.740 61.111 0.00 0.00 36.23 2.52
83 84 2.092882 CGTCGGGGCGAGAAGAAAC 61.093 63.158 0.00 0.00 36.23 2.78
84 85 1.005394 GTCGGGGCGAGAAGAAACA 60.005 57.895 0.00 0.00 36.23 2.83
85 86 1.014564 GTCGGGGCGAGAAGAAACAG 61.015 60.000 0.00 0.00 36.23 3.16
86 87 1.183030 TCGGGGCGAGAAGAAACAGA 61.183 55.000 0.00 0.00 0.00 3.41
87 88 0.108138 CGGGGCGAGAAGAAACAGAT 60.108 55.000 0.00 0.00 0.00 2.90
88 89 1.373570 GGGGCGAGAAGAAACAGATG 58.626 55.000 0.00 0.00 0.00 2.90
89 90 1.066143 GGGGCGAGAAGAAACAGATGA 60.066 52.381 0.00 0.00 0.00 2.92
90 91 2.615493 GGGGCGAGAAGAAACAGATGAA 60.615 50.000 0.00 0.00 0.00 2.57
91 92 3.274288 GGGCGAGAAGAAACAGATGAAT 58.726 45.455 0.00 0.00 0.00 2.57
92 93 3.691609 GGGCGAGAAGAAACAGATGAATT 59.308 43.478 0.00 0.00 0.00 2.17
93 94 4.156739 GGGCGAGAAGAAACAGATGAATTT 59.843 41.667 0.00 0.00 0.00 1.82
94 95 5.335976 GGGCGAGAAGAAACAGATGAATTTT 60.336 40.000 0.00 0.00 0.00 1.82
95 96 5.570589 GGCGAGAAGAAACAGATGAATTTTG 59.429 40.000 0.00 0.00 0.00 2.44
96 97 5.570589 GCGAGAAGAAACAGATGAATTTTGG 59.429 40.000 0.00 0.00 0.00 3.28
97 98 5.570589 CGAGAAGAAACAGATGAATTTTGGC 59.429 40.000 0.00 0.00 0.00 4.52
98 99 5.464168 AGAAGAAACAGATGAATTTTGGCG 58.536 37.500 0.00 0.00 0.00 5.69
99 100 5.241506 AGAAGAAACAGATGAATTTTGGCGA 59.758 36.000 0.00 0.00 0.00 5.54
100 101 5.452078 AGAAACAGATGAATTTTGGCGAA 57.548 34.783 0.00 0.00 0.00 4.70
101 102 5.841810 AGAAACAGATGAATTTTGGCGAAA 58.158 33.333 1.66 1.66 0.00 3.46
102 103 6.279882 AGAAACAGATGAATTTTGGCGAAAA 58.720 32.000 9.15 9.15 35.52 2.29
103 104 5.905480 AACAGATGAATTTTGGCGAAAAC 57.095 34.783 8.90 2.78 33.86 2.43
104 105 5.200368 ACAGATGAATTTTGGCGAAAACT 57.800 34.783 8.90 0.00 33.86 2.66
105 106 4.984161 ACAGATGAATTTTGGCGAAAACTG 59.016 37.500 8.90 12.87 33.86 3.16
106 107 3.989817 AGATGAATTTTGGCGAAAACTGC 59.010 39.130 8.90 2.71 33.86 4.40
107 108 3.170791 TGAATTTTGGCGAAAACTGCA 57.829 38.095 8.90 5.16 33.86 4.41
108 109 3.525537 TGAATTTTGGCGAAAACTGCAA 58.474 36.364 8.90 0.00 33.86 4.08
109 110 3.935203 TGAATTTTGGCGAAAACTGCAAA 59.065 34.783 8.90 0.00 33.86 3.68
110 111 4.033817 TGAATTTTGGCGAAAACTGCAAAG 59.966 37.500 8.90 0.00 33.86 2.77
111 112 2.663826 TTTGGCGAAAACTGCAAAGT 57.336 40.000 0.00 0.00 0.00 2.66
112 113 1.919918 TTGGCGAAAACTGCAAAGTG 58.080 45.000 0.00 0.00 0.00 3.16
113 114 0.814457 TGGCGAAAACTGCAAAGTGT 59.186 45.000 0.00 0.00 0.00 3.55
114 115 1.203523 TGGCGAAAACTGCAAAGTGTT 59.796 42.857 0.00 0.00 0.00 3.32
115 116 1.587946 GGCGAAAACTGCAAAGTGTTG 59.412 47.619 0.00 0.00 37.83 3.33
116 117 2.258755 GCGAAAACTGCAAAGTGTTGT 58.741 42.857 0.00 0.00 37.06 3.32
117 118 2.278875 GCGAAAACTGCAAAGTGTTGTC 59.721 45.455 0.00 0.00 37.06 3.18
118 119 3.758300 CGAAAACTGCAAAGTGTTGTCT 58.242 40.909 5.49 0.00 37.06 3.41
119 120 4.729458 GCGAAAACTGCAAAGTGTTGTCTA 60.729 41.667 5.49 0.00 37.06 2.59
120 121 5.510671 CGAAAACTGCAAAGTGTTGTCTAT 58.489 37.500 5.49 0.00 37.06 1.98
121 122 6.655062 CGAAAACTGCAAAGTGTTGTCTATA 58.345 36.000 5.49 0.00 37.06 1.31
122 123 7.298122 CGAAAACTGCAAAGTGTTGTCTATAT 58.702 34.615 5.49 0.00 37.06 0.86
123 124 8.440059 CGAAAACTGCAAAGTGTTGTCTATATA 58.560 33.333 5.49 0.00 37.06 0.86
124 125 9.760660 GAAAACTGCAAAGTGTTGTCTATATAG 57.239 33.333 3.10 3.10 37.06 1.31
125 126 6.910536 ACTGCAAAGTGTTGTCTATATAGC 57.089 37.500 4.75 1.54 37.06 2.97
126 127 6.406370 ACTGCAAAGTGTTGTCTATATAGCA 58.594 36.000 4.75 4.09 37.06 3.49
127 128 6.878923 ACTGCAAAGTGTTGTCTATATAGCAA 59.121 34.615 4.75 9.59 37.06 3.91
128 129 7.065085 ACTGCAAAGTGTTGTCTATATAGCAAG 59.935 37.037 15.49 7.82 37.06 4.01
129 130 7.102993 TGCAAAGTGTTGTCTATATAGCAAGA 58.897 34.615 15.49 13.00 37.06 3.02
130 131 7.278646 TGCAAAGTGTTGTCTATATAGCAAGAG 59.721 37.037 15.49 7.63 37.06 2.85
131 132 7.625553 CAAAGTGTTGTCTATATAGCAAGAGC 58.374 38.462 15.49 10.98 42.56 4.09
132 133 6.471233 AGTGTTGTCTATATAGCAAGAGCA 57.529 37.500 15.49 10.13 45.49 4.26
133 134 7.060383 AGTGTTGTCTATATAGCAAGAGCAT 57.940 36.000 15.49 5.73 45.49 3.79
134 135 7.504403 AGTGTTGTCTATATAGCAAGAGCATT 58.496 34.615 15.49 8.09 45.49 3.56
135 136 7.440556 AGTGTTGTCTATATAGCAAGAGCATTG 59.559 37.037 15.49 0.00 45.49 2.82
136 137 6.707608 TGTTGTCTATATAGCAAGAGCATTGG 59.292 38.462 15.49 0.00 45.49 3.16
137 138 6.425210 TGTCTATATAGCAAGAGCATTGGT 57.575 37.500 4.75 10.62 45.49 3.67
138 139 6.459066 TGTCTATATAGCAAGAGCATTGGTC 58.541 40.000 7.79 7.79 45.49 4.02
139 140 5.872070 GTCTATATAGCAAGAGCATTGGTCC 59.128 44.000 12.07 0.00 45.49 4.46
140 141 2.355010 ATAGCAAGAGCATTGGTCCC 57.645 50.000 12.07 2.04 45.49 4.46
141 142 0.107703 TAGCAAGAGCATTGGTCCCG 60.108 55.000 12.07 5.17 45.49 5.14
142 143 2.409870 GCAAGAGCATTGGTCCCGG 61.410 63.158 12.07 0.00 41.58 5.73
143 144 1.002134 CAAGAGCATTGGTCCCGGT 60.002 57.895 12.07 0.00 0.00 5.28
144 145 0.609131 CAAGAGCATTGGTCCCGGTT 60.609 55.000 12.07 0.00 0.00 4.44
145 146 0.322546 AAGAGCATTGGTCCCGGTTC 60.323 55.000 12.07 0.00 0.00 3.62
146 147 2.046314 AGCATTGGTCCCGGTTCG 60.046 61.111 0.00 0.00 0.00 3.95
147 148 2.359478 GCATTGGTCCCGGTTCGT 60.359 61.111 0.00 0.00 0.00 3.85
148 149 2.686816 GCATTGGTCCCGGTTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
149 150 1.004320 CATTGGTCCCGGTTCGTGA 60.004 57.895 0.00 0.00 0.00 4.35
150 151 1.004200 ATTGGTCCCGGTTCGTGAC 60.004 57.895 0.00 0.00 33.83 3.67
151 152 1.760479 ATTGGTCCCGGTTCGTGACA 61.760 55.000 0.00 0.00 36.08 3.58
152 153 2.356673 GGTCCCGGTTCGTGACAC 60.357 66.667 0.00 0.00 36.08 3.67
153 154 2.418356 GTCCCGGTTCGTGACACA 59.582 61.111 6.37 0.00 34.65 3.72
154 155 1.227321 GTCCCGGTTCGTGACACAA 60.227 57.895 6.37 0.00 34.65 3.33
155 156 0.810823 GTCCCGGTTCGTGACACAAA 60.811 55.000 6.37 0.00 34.65 2.83
156 157 0.810823 TCCCGGTTCGTGACACAAAC 60.811 55.000 6.37 3.36 0.00 2.93
157 158 1.644913 CCGGTTCGTGACACAAACC 59.355 57.895 17.07 17.07 39.25 3.27
159 160 1.644913 GGTTCGTGACACAAACCGG 59.355 57.895 12.55 0.00 33.68 5.28
160 161 1.644913 GTTCGTGACACAAACCGGG 59.355 57.895 6.32 0.00 0.00 5.73
161 162 0.810823 GTTCGTGACACAAACCGGGA 60.811 55.000 6.32 0.00 0.00 5.14
162 163 0.810823 TTCGTGACACAAACCGGGAC 60.811 55.000 6.32 0.00 0.00 4.46
163 164 1.227438 CGTGACACAAACCGGGACT 60.227 57.895 6.32 0.00 0.00 3.85
164 165 0.032403 CGTGACACAAACCGGGACTA 59.968 55.000 6.32 0.00 0.00 2.59
165 166 1.538634 CGTGACACAAACCGGGACTAA 60.539 52.381 6.32 0.00 0.00 2.24
166 167 2.774687 GTGACACAAACCGGGACTAAT 58.225 47.619 6.32 0.00 0.00 1.73
167 168 2.482721 GTGACACAAACCGGGACTAATG 59.517 50.000 6.32 0.00 0.00 1.90
168 169 1.467342 GACACAAACCGGGACTAATGC 59.533 52.381 6.32 0.00 0.00 3.56
169 170 0.808755 CACAAACCGGGACTAATGCC 59.191 55.000 6.32 0.00 0.00 4.40
170 171 0.323087 ACAAACCGGGACTAATGCCC 60.323 55.000 6.32 0.00 42.41 5.36
171 172 1.035385 CAAACCGGGACTAATGCCCC 61.035 60.000 6.32 0.00 42.92 5.80
172 173 2.219449 AAACCGGGACTAATGCCCCC 62.219 60.000 6.32 0.00 42.92 5.40
186 187 3.830698 CCCCCTTTAGTCCCGGTT 58.169 61.111 0.00 0.00 0.00 4.44
187 188 1.301954 CCCCCTTTAGTCCCGGTTG 59.698 63.158 0.00 0.00 0.00 3.77
188 189 1.202769 CCCCCTTTAGTCCCGGTTGA 61.203 60.000 0.00 0.00 0.00 3.18
189 190 0.916809 CCCCTTTAGTCCCGGTTGAT 59.083 55.000 0.00 0.00 0.00 2.57
190 191 1.408266 CCCCTTTAGTCCCGGTTGATG 60.408 57.143 0.00 0.00 0.00 3.07
191 192 1.379527 CCTTTAGTCCCGGTTGATGC 58.620 55.000 0.00 0.00 0.00 3.91
192 193 1.379527 CTTTAGTCCCGGTTGATGCC 58.620 55.000 0.00 0.00 0.00 4.40
193 194 0.693622 TTTAGTCCCGGTTGATGCCA 59.306 50.000 0.00 0.00 0.00 4.92
194 195 0.035820 TTAGTCCCGGTTGATGCCAC 60.036 55.000 0.00 0.00 0.00 5.01
195 196 1.906105 TAGTCCCGGTTGATGCCACC 61.906 60.000 0.00 0.00 0.00 4.61
196 197 3.253061 TCCCGGTTGATGCCACCA 61.253 61.111 0.00 0.00 0.00 4.17
197 198 2.282816 CCCGGTTGATGCCACCAA 60.283 61.111 0.00 0.00 0.00 3.67
198 199 2.635443 CCCGGTTGATGCCACCAAC 61.635 63.158 0.00 0.00 42.18 3.77
201 202 2.961768 GTTGATGCCACCAACCGG 59.038 61.111 0.00 0.00 38.28 5.28
202 203 2.282816 TTGATGCCACCAACCGGG 60.283 61.111 6.32 0.00 44.81 5.73
203 204 2.835049 TTGATGCCACCAACCGGGA 61.835 57.895 6.32 0.00 41.15 5.14
204 205 2.750237 GATGCCACCAACCGGGAC 60.750 66.667 6.32 0.00 41.15 4.46
205 206 4.360405 ATGCCACCAACCGGGACC 62.360 66.667 6.32 0.00 41.15 4.46
207 208 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
208 209 2.196229 CCACCAACCGGGACCAAA 59.804 61.111 6.32 0.00 41.15 3.28
209 210 1.901464 CCACCAACCGGGACCAAAG 60.901 63.158 6.32 0.00 41.15 2.77
210 211 1.901464 CACCAACCGGGACCAAAGG 60.901 63.158 6.32 0.00 41.15 3.11
211 212 2.989253 CCAACCGGGACCAAAGGC 60.989 66.667 6.32 0.00 40.01 4.35
212 213 2.115266 CAACCGGGACCAAAGGCT 59.885 61.111 6.32 0.00 0.00 4.58
213 214 1.530655 CAACCGGGACCAAAGGCTT 60.531 57.895 6.32 0.00 0.00 4.35
214 215 1.228459 AACCGGGACCAAAGGCTTC 60.228 57.895 6.32 0.00 0.00 3.86
215 216 1.716028 AACCGGGACCAAAGGCTTCT 61.716 55.000 6.32 0.00 0.00 2.85
216 217 1.074951 CCGGGACCAAAGGCTTCTT 59.925 57.895 0.00 0.00 0.00 2.52
217 218 0.539669 CCGGGACCAAAGGCTTCTTT 60.540 55.000 0.00 0.00 41.02 2.52
218 219 1.328279 CGGGACCAAAGGCTTCTTTT 58.672 50.000 0.00 0.00 38.55 2.27
219 220 1.686587 CGGGACCAAAGGCTTCTTTTT 59.313 47.619 0.00 0.00 38.55 1.94
220 221 2.888414 CGGGACCAAAGGCTTCTTTTTA 59.112 45.455 0.00 0.00 38.55 1.52
221 222 3.057526 CGGGACCAAAGGCTTCTTTTTAG 60.058 47.826 0.00 0.00 38.55 1.85
222 223 3.306088 GGGACCAAAGGCTTCTTTTTAGC 60.306 47.826 0.00 0.00 38.55 3.09
223 224 3.320826 GGACCAAAGGCTTCTTTTTAGCA 59.679 43.478 0.00 0.00 38.55 3.49
224 225 4.550422 GACCAAAGGCTTCTTTTTAGCAG 58.450 43.478 0.00 0.00 38.55 4.24
225 226 3.243873 ACCAAAGGCTTCTTTTTAGCAGC 60.244 43.478 0.00 0.00 38.55 5.25
228 229 1.256812 GGCTTCTTTTTAGCAGCCCA 58.743 50.000 4.74 0.00 45.39 5.36
229 230 1.618343 GGCTTCTTTTTAGCAGCCCAA 59.382 47.619 4.74 0.00 45.39 4.12
329 330 1.485066 ACGGGACAACAGAGTGACTTT 59.515 47.619 0.00 0.00 0.00 2.66
341 342 7.055667 ACAGAGTGACTTTGATGAACTTCTA 57.944 36.000 10.32 0.00 0.00 2.10
342 343 7.500992 ACAGAGTGACTTTGATGAACTTCTAA 58.499 34.615 10.32 0.00 0.00 2.10
343 344 7.439655 ACAGAGTGACTTTGATGAACTTCTAAC 59.560 37.037 10.32 0.00 0.00 2.34
344 345 7.439356 CAGAGTGACTTTGATGAACTTCTAACA 59.561 37.037 0.00 0.00 0.00 2.41
345 346 7.987458 AGAGTGACTTTGATGAACTTCTAACAA 59.013 33.333 0.00 0.00 0.00 2.83
346 347 7.920738 AGTGACTTTGATGAACTTCTAACAAC 58.079 34.615 0.00 0.00 0.00 3.32
349 350 8.181573 TGACTTTGATGAACTTCTAACAACAAC 58.818 33.333 0.00 0.00 0.00 3.32
355 356 4.037446 TGAACTTCTAACAACAACATGGCC 59.963 41.667 0.00 0.00 0.00 5.36
357 358 3.569701 ACTTCTAACAACAACATGGCCTG 59.430 43.478 3.32 2.01 0.00 4.85
374 375 3.829026 GGCCTGAGAACCTTTTCATTTCT 59.171 43.478 0.00 0.00 33.72 2.52
378 379 7.433680 GCCTGAGAACCTTTTCATTTCTAAAA 58.566 34.615 0.00 0.00 33.72 1.52
387 388 9.665719 ACCTTTTCATTTCTAAAAAGAAAGCAA 57.334 25.926 8.69 0.19 42.44 3.91
399 400 4.341366 AAGAAAGCAAAAACCATCCCAG 57.659 40.909 0.00 0.00 0.00 4.45
400 401 3.308401 AGAAAGCAAAAACCATCCCAGT 58.692 40.909 0.00 0.00 0.00 4.00
405 406 2.479560 GCAAAAACCATCCCAGTATCGC 60.480 50.000 0.00 0.00 0.00 4.58
407 408 0.179056 AAACCATCCCAGTATCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
408 409 1.335132 AACCATCCCAGTATCGCCGT 61.335 55.000 0.00 0.00 0.00 5.68
438 439 3.391382 GGTCACCACCCTCCCTCG 61.391 72.222 0.00 0.00 36.54 4.63
441 442 4.087892 CACCACCCTCCCTCGCAG 62.088 72.222 0.00 0.00 0.00 5.18
483 484 2.579201 CAATCGAGCCGGTGAGGT 59.421 61.111 1.90 0.00 43.70 3.85
484 485 1.813859 CAATCGAGCCGGTGAGGTA 59.186 57.895 1.90 0.00 43.70 3.08
505 506 4.423764 GGTTCACGTGTTCACCGA 57.576 55.556 16.51 0.00 0.00 4.69
506 507 2.222592 GGTTCACGTGTTCACCGAG 58.777 57.895 16.51 0.00 0.00 4.63
507 508 1.563173 GTTCACGTGTTCACCGAGC 59.437 57.895 16.51 0.00 0.00 5.03
508 509 1.142097 TTCACGTGTTCACCGAGCA 59.858 52.632 16.51 0.00 0.00 4.26
534 535 3.193267 CACCGATTCATTGGTTCATTGGT 59.807 43.478 0.00 0.00 41.90 3.67
543 544 6.279882 TCATTGGTTCATTGGTGAGAAAAAC 58.720 36.000 0.00 0.00 35.39 2.43
544 545 4.664150 TGGTTCATTGGTGAGAAAAACC 57.336 40.909 0.00 0.00 35.39 3.27
596 637 2.893489 ACCTCAAGTCAAATGGAAAGGC 59.107 45.455 0.00 0.00 0.00 4.35
601 642 1.000274 AGTCAAATGGAAAGGCGTTGC 60.000 47.619 0.00 0.00 0.00 4.17
606 647 0.322456 ATGGAAAGGCGTTGCTAGCA 60.322 50.000 14.93 14.93 36.08 3.49
611 652 0.609131 AAGGCGTTGCTAGCATTGGT 60.609 50.000 20.13 0.00 37.22 3.67
612 653 0.609131 AGGCGTTGCTAGCATTGGTT 60.609 50.000 20.13 1.83 36.08 3.67
613 654 0.179163 GGCGTTGCTAGCATTGGTTC 60.179 55.000 20.13 4.93 36.08 3.62
614 655 0.521242 GCGTTGCTAGCATTGGTTCG 60.521 55.000 20.13 16.10 34.19 3.95
615 656 1.075542 CGTTGCTAGCATTGGTTCGA 58.924 50.000 20.13 0.00 0.00 3.71
616 657 1.665679 CGTTGCTAGCATTGGTTCGAT 59.334 47.619 20.13 0.00 0.00 3.59
617 658 2.285834 CGTTGCTAGCATTGGTTCGATC 60.286 50.000 20.13 0.00 0.00 3.69
618 659 1.953559 TGCTAGCATTGGTTCGATCC 58.046 50.000 14.93 5.52 0.00 3.36
619 660 1.230324 GCTAGCATTGGTTCGATCCC 58.770 55.000 10.63 2.41 0.00 3.85
620 661 1.475034 GCTAGCATTGGTTCGATCCCA 60.475 52.381 10.63 5.18 0.00 4.37
621 662 2.487934 CTAGCATTGGTTCGATCCCAG 58.512 52.381 10.02 1.45 32.49 4.45
622 663 0.107017 AGCATTGGTTCGATCCCAGG 60.107 55.000 10.02 2.08 32.49 4.45
623 664 0.394352 GCATTGGTTCGATCCCAGGT 60.394 55.000 10.02 0.00 32.49 4.00
624 665 1.955208 GCATTGGTTCGATCCCAGGTT 60.955 52.381 10.02 0.00 32.49 3.50
625 666 2.446435 CATTGGTTCGATCCCAGGTTT 58.554 47.619 10.02 0.00 32.49 3.27
626 667 3.616219 CATTGGTTCGATCCCAGGTTTA 58.384 45.455 10.02 0.00 32.49 2.01
627 668 2.773993 TGGTTCGATCCCAGGTTTAC 57.226 50.000 10.02 0.00 0.00 2.01
628 669 1.279846 TGGTTCGATCCCAGGTTTACC 59.720 52.381 10.02 0.00 0.00 2.85
629 670 1.279846 GGTTCGATCCCAGGTTTACCA 59.720 52.381 0.63 0.00 38.89 3.25
630 671 2.290450 GGTTCGATCCCAGGTTTACCAA 60.290 50.000 0.63 0.00 38.89 3.67
631 672 2.745821 GTTCGATCCCAGGTTTACCAAC 59.254 50.000 1.13 0.00 38.89 3.77
653 694 9.754382 CCAACCATTTTATGAATATTTCTCTGG 57.246 33.333 0.00 0.00 0.00 3.86
682 723 7.797038 TTTATATTAAAAGACCGGAGAAGGC 57.203 36.000 9.46 0.00 33.69 4.35
683 724 3.713826 ATTAAAAGACCGGAGAAGGCA 57.286 42.857 9.46 0.00 33.69 4.75
684 725 3.713826 TTAAAAGACCGGAGAAGGCAT 57.286 42.857 9.46 0.00 33.69 4.40
685 726 2.115343 AAAAGACCGGAGAAGGCATC 57.885 50.000 9.46 0.00 33.69 3.91
686 727 0.108138 AAAGACCGGAGAAGGCATCG 60.108 55.000 9.46 0.00 33.69 3.84
687 728 1.961180 AAGACCGGAGAAGGCATCGG 61.961 60.000 9.46 0.00 46.95 4.18
689 730 2.584608 CCGGAGAAGGCATCGGTT 59.415 61.111 0.00 0.00 37.92 4.44
690 731 1.521681 CCGGAGAAGGCATCGGTTC 60.522 63.158 0.00 0.00 37.92 3.62
691 732 1.521681 CGGAGAAGGCATCGGTTCC 60.522 63.158 0.00 0.00 0.00 3.62
692 733 1.153147 GGAGAAGGCATCGGTTCCC 60.153 63.158 0.00 0.00 0.00 3.97
693 734 1.153147 GAGAAGGCATCGGTTCCCC 60.153 63.158 0.00 0.00 0.00 4.81
694 735 2.124278 GAAGGCATCGGTTCCCCC 60.124 66.667 0.00 0.00 0.00 5.40
695 736 2.614013 AAGGCATCGGTTCCCCCT 60.614 61.111 0.00 0.00 0.00 4.79
696 737 2.211468 GAAGGCATCGGTTCCCCCTT 62.211 60.000 0.00 0.00 38.54 3.95
697 738 1.800229 AAGGCATCGGTTCCCCCTTT 61.800 55.000 0.00 0.00 32.20 3.11
698 739 1.304962 GGCATCGGTTCCCCCTTTT 60.305 57.895 0.00 0.00 0.00 2.27
699 740 0.902984 GGCATCGGTTCCCCCTTTTT 60.903 55.000 0.00 0.00 0.00 1.94
718 759 1.365699 TTTTTATCAGACCGCTCGGC 58.634 50.000 8.41 1.58 39.32 5.54
719 760 0.461339 TTTTATCAGACCGCTCGGCC 60.461 55.000 8.41 0.00 39.32 6.13
720 761 2.306255 TTTATCAGACCGCTCGGCCC 62.306 60.000 8.41 0.76 39.32 5.80
733 774 2.033911 GGCCCGACCCGGTTTTTA 59.966 61.111 0.00 0.00 46.80 1.52
734 775 1.603171 GGCCCGACCCGGTTTTTAA 60.603 57.895 0.00 0.00 46.80 1.52
735 776 1.177895 GGCCCGACCCGGTTTTTAAA 61.178 55.000 0.00 0.00 46.80 1.52
736 777 0.672889 GCCCGACCCGGTTTTTAAAA 59.327 50.000 0.00 0.00 46.80 1.52
737 778 1.602668 GCCCGACCCGGTTTTTAAAAC 60.603 52.381 11.71 11.71 46.80 2.43
738 779 1.955778 CCCGACCCGGTTTTTAAAACT 59.044 47.619 18.31 0.59 46.80 2.66
739 780 2.030893 CCCGACCCGGTTTTTAAAACTC 60.031 50.000 18.31 8.53 46.80 3.01
740 781 2.880268 CCGACCCGGTTTTTAAAACTCT 59.120 45.455 18.31 1.17 42.73 3.24
741 782 3.304190 CCGACCCGGTTTTTAAAACTCTG 60.304 47.826 18.31 10.20 42.73 3.35
742 783 3.635331 GACCCGGTTTTTAAAACTCTGC 58.365 45.455 18.31 3.12 0.00 4.26
743 784 3.293337 ACCCGGTTTTTAAAACTCTGCT 58.707 40.909 18.31 0.00 0.00 4.24
744 785 3.317149 ACCCGGTTTTTAAAACTCTGCTC 59.683 43.478 18.31 2.16 0.00 4.26
745 786 3.551551 CCGGTTTTTAAAACTCTGCTCG 58.448 45.455 18.31 12.36 0.00 5.03
746 787 3.002965 CCGGTTTTTAAAACTCTGCTCGT 59.997 43.478 18.31 0.00 0.00 4.18
747 788 3.966218 CGGTTTTTAAAACTCTGCTCGTG 59.034 43.478 18.31 0.00 0.00 4.35
748 789 4.287720 GGTTTTTAAAACTCTGCTCGTGG 58.712 43.478 18.31 0.00 0.00 4.94
749 790 4.035909 GGTTTTTAAAACTCTGCTCGTGGA 59.964 41.667 18.31 0.00 0.00 4.02
750 791 5.278315 GGTTTTTAAAACTCTGCTCGTGGAT 60.278 40.000 18.31 0.00 0.00 3.41
751 792 6.206498 GTTTTTAAAACTCTGCTCGTGGATT 58.794 36.000 12.73 0.00 0.00 3.01
752 793 5.607119 TTTAAAACTCTGCTCGTGGATTC 57.393 39.130 0.00 0.00 0.00 2.52
753 794 2.839486 AAACTCTGCTCGTGGATTCA 57.161 45.000 0.00 0.00 0.00 2.57
754 795 2.086054 AACTCTGCTCGTGGATTCAC 57.914 50.000 0.00 0.00 40.36 3.18
755 796 0.247736 ACTCTGCTCGTGGATTCACC 59.752 55.000 0.00 0.00 40.65 4.02
792 833 2.593436 GAACCCACCCACCACACG 60.593 66.667 0.00 0.00 0.00 4.49
870 924 3.775654 CCCACTCACTCGCTCCCC 61.776 72.222 0.00 0.00 0.00 4.81
884 938 0.400670 CTCCCCCTCCCCCTCTTTAG 60.401 65.000 0.00 0.00 0.00 1.85
1014 1084 2.609299 TCAATGGCGGGAGGGTCA 60.609 61.111 0.00 0.00 0.00 4.02
1279 1350 3.473647 CGCCCAGATCTCCCTGCA 61.474 66.667 0.00 0.00 32.97 4.41
1280 1351 3.001514 GCCCAGATCTCCCTGCAA 58.998 61.111 0.00 0.00 32.97 4.08
1281 1352 1.153005 GCCCAGATCTCCCTGCAAG 60.153 63.158 0.00 0.00 32.97 4.01
1282 1353 1.153005 CCCAGATCTCCCTGCAAGC 60.153 63.158 0.00 0.00 32.97 4.01
1299 1370 4.749310 CCCGCGCTCTGCAGAGTT 62.749 66.667 37.25 0.00 46.97 3.01
1300 1371 2.181777 CCGCGCTCTGCAGAGTTA 59.818 61.111 37.25 9.10 46.97 2.24
1301 1372 1.227089 CCGCGCTCTGCAGAGTTAT 60.227 57.895 37.25 0.00 46.97 1.89
1302 1373 0.030773 CCGCGCTCTGCAGAGTTATA 59.969 55.000 37.25 7.96 46.97 0.98
1304 1375 1.268794 CGCGCTCTGCAGAGTTATACT 60.269 52.381 37.25 0.00 46.97 2.12
1305 1376 2.796383 CGCGCTCTGCAGAGTTATACTT 60.796 50.000 37.25 0.00 46.97 2.24
1307 1378 3.244111 GCGCTCTGCAGAGTTATACTTTC 59.756 47.826 37.25 20.23 45.45 2.62
1308 1379 4.677584 CGCTCTGCAGAGTTATACTTTCT 58.322 43.478 37.25 0.00 43.85 2.52
1309 1380 4.502282 CGCTCTGCAGAGTTATACTTTCTG 59.498 45.833 37.25 14.70 43.85 3.02
1311 1382 5.518487 GCTCTGCAGAGTTATACTTTCTGTC 59.482 44.000 37.25 16.76 43.85 3.51
1315 1400 4.266502 GCAGAGTTATACTTTCTGTCTGCG 59.733 45.833 5.73 0.00 44.16 5.18
1320 1406 7.489757 AGAGTTATACTTTCTGTCTGCGATTTC 59.510 37.037 0.00 0.00 0.00 2.17
1323 1409 2.731976 ACTTTCTGTCTGCGATTTCGTC 59.268 45.455 1.55 0.00 42.22 4.20
1324 1410 1.710013 TTCTGTCTGCGATTTCGTCC 58.290 50.000 1.55 0.00 42.22 4.79
1347 1435 1.061799 GAGCGAGCAATGCGTTTGTG 61.062 55.000 0.00 0.00 37.65 3.33
1459 2483 7.032580 AGATGTCTTCAGTTATTCAGAAGTCG 58.967 38.462 0.00 0.00 39.58 4.18
1499 2532 5.475719 TGTAGCCGAGTAATTATGTATGGC 58.524 41.667 8.33 8.33 41.50 4.40
1517 2550 2.284190 GGCCACTGAACAAGATAGAGC 58.716 52.381 0.00 0.00 0.00 4.09
1519 2552 3.133003 GGCCACTGAACAAGATAGAGCTA 59.867 47.826 0.00 0.00 0.00 3.32
1644 2696 5.987777 TGGCAATGTTTGTTCTTTGATTG 57.012 34.783 0.00 0.00 0.00 2.67
1646 2698 5.879223 TGGCAATGTTTGTTCTTTGATTGTT 59.121 32.000 0.00 0.00 0.00 2.83
1658 2710 6.633500 TCTTTGATTGTTAAGTTCCACCTG 57.367 37.500 0.00 0.00 0.00 4.00
1659 2711 4.846779 TTGATTGTTAAGTTCCACCTGC 57.153 40.909 0.00 0.00 0.00 4.85
1661 2713 2.623878 TTGTTAAGTTCCACCTGCGA 57.376 45.000 0.00 0.00 0.00 5.10
1662 2714 2.851263 TGTTAAGTTCCACCTGCGAT 57.149 45.000 0.00 0.00 0.00 4.58
1664 2716 2.037902 TGTTAAGTTCCACCTGCGATGA 59.962 45.455 0.00 0.00 0.00 2.92
1665 2717 2.380084 TAAGTTCCACCTGCGATGAC 57.620 50.000 0.00 0.00 0.00 3.06
1742 3008 8.919145 TCTTATTTATTCTTCTCTCTGGACTCC 58.081 37.037 0.00 0.00 0.00 3.85
1743 3009 8.609617 TTATTTATTCTTCTCTCTGGACTCCA 57.390 34.615 0.00 0.00 0.00 3.86
1744 3010 7.688918 ATTTATTCTTCTCTCTGGACTCCAT 57.311 36.000 0.00 0.00 30.82 3.41
1745 3011 7.502060 TTTATTCTTCTCTCTGGACTCCATT 57.498 36.000 0.00 0.00 30.82 3.16
1746 3012 4.815533 TTCTTCTCTCTGGACTCCATTG 57.184 45.455 0.00 0.00 30.82 2.82
1791 3061 6.419116 CCATGATATACTCTGTTTCGTCAGTG 59.581 42.308 0.00 0.00 36.85 3.66
1792 3062 5.891451 TGATATACTCTGTTTCGTCAGTGG 58.109 41.667 0.00 0.00 36.85 4.00
1793 3063 5.417894 TGATATACTCTGTTTCGTCAGTGGT 59.582 40.000 0.00 0.00 36.85 4.16
1794 3064 2.981859 ACTCTGTTTCGTCAGTGGTT 57.018 45.000 0.00 0.00 36.85 3.67
1795 3065 3.261981 ACTCTGTTTCGTCAGTGGTTT 57.738 42.857 0.00 0.00 36.85 3.27
1797 3067 4.761975 ACTCTGTTTCGTCAGTGGTTTAA 58.238 39.130 0.00 0.00 36.85 1.52
1798 3068 4.809426 ACTCTGTTTCGTCAGTGGTTTAAG 59.191 41.667 0.00 0.00 36.85 1.85
1800 3070 5.904941 TCTGTTTCGTCAGTGGTTTAAGTA 58.095 37.500 0.00 0.00 36.85 2.24
1881 3897 9.471084 GCTACCTCTGAAAGATATTAACTCTTC 57.529 37.037 3.32 0.15 45.62 2.87
1967 3992 5.957842 TTACAAAACCAGTCCATAAGCTG 57.042 39.130 0.00 0.00 0.00 4.24
1969 3994 3.821033 ACAAAACCAGTCCATAAGCTGTC 59.179 43.478 0.00 0.00 0.00 3.51
2047 4185 4.393062 CCTTGTCTGTAAACATAGGCACTG 59.607 45.833 0.00 0.00 41.52 3.66
2287 4478 2.362077 GCTAAAGCAGAGAGAGGAGGAG 59.638 54.545 0.00 0.00 41.59 3.69
2416 4607 4.780021 TGTGAAGAAGCTAGGGAGAAATCT 59.220 41.667 0.00 0.00 0.00 2.40
2499 4690 0.257616 GGATGGAAACCCGGGAATGA 59.742 55.000 32.02 7.00 0.00 2.57
2637 4844 1.843851 TCCAGTTCTGGTGACCTTGTT 59.156 47.619 17.00 0.00 0.00 2.83
2709 4926 7.924358 TGGGTTTGTAGTATATGTCCATAGT 57.076 36.000 0.00 0.00 0.00 2.12
2763 4983 0.973632 TGGCACTCGTCACCTGTAAT 59.026 50.000 0.00 0.00 0.00 1.89
2796 5040 5.333875 GGGTGATCAGTTTCGTAGTTGTTTC 60.334 44.000 0.00 0.00 0.00 2.78
2875 5119 6.128172 GGATAGTTGTTTGATGAGTTGTGAGG 60.128 42.308 0.00 0.00 0.00 3.86
2975 5227 9.553064 GAGATGATATTTTGGTCAAGTGACTAT 57.447 33.333 11.07 1.37 44.20 2.12
2984 5236 7.482169 TTGGTCAAGTGACTATTGTAGAGAT 57.518 36.000 11.07 0.00 44.20 2.75
3031 5285 3.199946 ACAGACTTCTCCAAACCTGTCAA 59.800 43.478 0.00 0.00 29.93 3.18
3173 5468 5.192927 TCAACCTAAGATGCCCACAATAAG 58.807 41.667 0.00 0.00 0.00 1.73
3261 6102 6.818644 TGAACTCTTACATAAACTCCTCATGC 59.181 38.462 0.00 0.00 0.00 4.06
3280 6121 2.289382 TGCTCTTCTTTACCATGTCGCA 60.289 45.455 0.00 0.00 0.00 5.10
3281 6122 2.939103 GCTCTTCTTTACCATGTCGCAT 59.061 45.455 0.00 0.00 0.00 4.73
3299 6140 8.617290 TGTCGCATGTCTTATATAAGTAGAGA 57.383 34.615 19.58 12.72 34.93 3.10
3360 6201 9.448438 TGTATGTTCTAATAATGTTGCTCAAGT 57.552 29.630 0.00 0.00 0.00 3.16
3367 6208 5.772825 ATAATGTTGCTCAAGTGTGTTGT 57.227 34.783 0.00 0.00 0.00 3.32
3406 6249 6.662755 AGATTGTTAGGAATGATAGGCAACA 58.337 36.000 0.00 0.00 41.41 3.33
3407 6250 7.293073 AGATTGTTAGGAATGATAGGCAACAT 58.707 34.615 0.00 0.00 41.41 2.71
3422 6265 2.550606 GCAACATGACTACCGGAAACAA 59.449 45.455 9.46 0.00 0.00 2.83
3423 6266 3.608474 GCAACATGACTACCGGAAACAAC 60.608 47.826 9.46 0.00 0.00 3.32
3426 6269 1.873698 TGACTACCGGAAACAACAGC 58.126 50.000 9.46 0.00 0.00 4.40
3430 6273 0.470766 TACCGGAAACAACAGCTGGT 59.529 50.000 19.93 9.19 43.42 4.00
3431 6274 1.101049 ACCGGAAACAACAGCTGGTG 61.101 55.000 30.07 30.07 39.72 4.17
3432 6275 0.817634 CCGGAAACAACAGCTGGTGA 60.818 55.000 37.55 0.00 35.97 4.02
3433 6276 1.238439 CGGAAACAACAGCTGGTGAT 58.762 50.000 37.55 24.48 35.97 3.06
3436 6279 2.030805 GGAAACAACAGCTGGTGATGAC 60.031 50.000 37.55 21.75 35.97 3.06
3438 6281 2.645838 ACAACAGCTGGTGATGACTT 57.354 45.000 37.55 11.92 35.97 3.01
3444 6289 3.181455 ACAGCTGGTGATGACTTTGTGTA 60.181 43.478 19.93 0.00 33.22 2.90
3471 6316 2.615447 AGTGTTGTGCATGTCAGAGTTG 59.385 45.455 0.00 0.00 0.00 3.16
3477 6322 2.486982 GTGCATGTCAGAGTTGCATCTT 59.513 45.455 9.79 0.00 46.90 2.40
3493 6338 4.877823 TGCATCTTCATGTAACCAAGCTAG 59.122 41.667 0.00 0.00 31.86 3.42
3498 6343 7.949690 TCTTCATGTAACCAAGCTAGTAGTA 57.050 36.000 0.00 0.00 0.00 1.82
3507 6352 5.269991 ACCAAGCTAGTAGTAACATCCAGA 58.730 41.667 0.00 0.00 0.00 3.86
3514 6359 5.283457 AGTAGTAACATCCAGATCCAAGC 57.717 43.478 0.00 0.00 0.00 4.01
3519 6364 3.377253 ACATCCAGATCCAAGCAACAT 57.623 42.857 0.00 0.00 0.00 2.71
3520 6365 3.705051 ACATCCAGATCCAAGCAACATT 58.295 40.909 0.00 0.00 0.00 2.71
3521 6366 4.091549 ACATCCAGATCCAAGCAACATTT 58.908 39.130 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.997315 TCAGGCTGGTCCACCTCG 60.997 66.667 15.73 6.75 37.29 4.63
2 3 3.314331 CGTCAGGCTGGTCCACCT 61.314 66.667 15.73 7.08 37.29 4.00
3 4 4.394712 CCGTCAGGCTGGTCCACC 62.395 72.222 15.73 0.00 37.29 4.61
43 44 4.838486 CTGCTCCTCGTCGCCGTC 62.838 72.222 0.00 0.00 35.01 4.79
45 46 4.116328 TTCTGCTCCTCGTCGCCG 62.116 66.667 0.00 0.00 0.00 6.46
46 47 2.202676 CTTCTGCTCCTCGTCGCC 60.203 66.667 0.00 0.00 0.00 5.54
47 48 2.202676 CCTTCTGCTCCTCGTCGC 60.203 66.667 0.00 0.00 0.00 5.19
48 49 2.202676 GCCTTCTGCTCCTCGTCG 60.203 66.667 0.00 0.00 36.87 5.12
49 50 2.202676 CGCCTTCTGCTCCTCGTC 60.203 66.667 0.00 0.00 38.05 4.20
50 51 2.992114 ACGCCTTCTGCTCCTCGT 60.992 61.111 0.00 0.00 38.05 4.18
51 52 2.202676 GACGCCTTCTGCTCCTCG 60.203 66.667 0.00 0.00 38.05 4.63
52 53 2.202676 CGACGCCTTCTGCTCCTC 60.203 66.667 0.00 0.00 38.05 3.71
53 54 3.764466 CCGACGCCTTCTGCTCCT 61.764 66.667 0.00 0.00 38.05 3.69
54 55 4.821589 CCCGACGCCTTCTGCTCC 62.822 72.222 0.00 0.00 38.05 4.70
55 56 4.821589 CCCCGACGCCTTCTGCTC 62.822 72.222 0.00 0.00 38.05 4.26
64 65 3.927163 TTTCTTCTCGCCCCGACGC 62.927 63.158 0.00 0.00 0.00 5.19
65 66 2.092882 GTTTCTTCTCGCCCCGACG 61.093 63.158 0.00 0.00 0.00 5.12
66 67 1.005394 TGTTTCTTCTCGCCCCGAC 60.005 57.895 0.00 0.00 0.00 4.79
67 68 1.183030 TCTGTTTCTTCTCGCCCCGA 61.183 55.000 0.00 0.00 0.00 5.14
68 69 0.108138 ATCTGTTTCTTCTCGCCCCG 60.108 55.000 0.00 0.00 0.00 5.73
69 70 1.066143 TCATCTGTTTCTTCTCGCCCC 60.066 52.381 0.00 0.00 0.00 5.80
70 71 2.386661 TCATCTGTTTCTTCTCGCCC 57.613 50.000 0.00 0.00 0.00 6.13
71 72 4.954092 AATTCATCTGTTTCTTCTCGCC 57.046 40.909 0.00 0.00 0.00 5.54
72 73 5.570589 CCAAAATTCATCTGTTTCTTCTCGC 59.429 40.000 0.00 0.00 0.00 5.03
73 74 5.570589 GCCAAAATTCATCTGTTTCTTCTCG 59.429 40.000 0.00 0.00 0.00 4.04
74 75 5.570589 CGCCAAAATTCATCTGTTTCTTCTC 59.429 40.000 0.00 0.00 0.00 2.87
75 76 5.241506 TCGCCAAAATTCATCTGTTTCTTCT 59.758 36.000 0.00 0.00 0.00 2.85
76 77 5.460646 TCGCCAAAATTCATCTGTTTCTTC 58.539 37.500 0.00 0.00 0.00 2.87
77 78 5.452078 TCGCCAAAATTCATCTGTTTCTT 57.548 34.783 0.00 0.00 0.00 2.52
78 79 5.452078 TTCGCCAAAATTCATCTGTTTCT 57.548 34.783 0.00 0.00 0.00 2.52
79 80 6.200854 AGTTTTCGCCAAAATTCATCTGTTTC 59.799 34.615 0.00 0.00 33.98 2.78
80 81 6.018832 CAGTTTTCGCCAAAATTCATCTGTTT 60.019 34.615 0.00 0.00 33.98 2.83
81 82 5.463061 CAGTTTTCGCCAAAATTCATCTGTT 59.537 36.000 0.00 0.00 33.98 3.16
82 83 4.984161 CAGTTTTCGCCAAAATTCATCTGT 59.016 37.500 0.00 0.00 33.98 3.41
83 84 4.143263 GCAGTTTTCGCCAAAATTCATCTG 60.143 41.667 0.00 0.00 33.98 2.90
84 85 3.989817 GCAGTTTTCGCCAAAATTCATCT 59.010 39.130 0.00 0.00 33.98 2.90
85 86 3.740321 TGCAGTTTTCGCCAAAATTCATC 59.260 39.130 0.00 0.00 33.98 2.92
86 87 3.726607 TGCAGTTTTCGCCAAAATTCAT 58.273 36.364 0.00 0.00 33.98 2.57
87 88 3.170791 TGCAGTTTTCGCCAAAATTCA 57.829 38.095 0.00 0.00 33.98 2.57
88 89 4.033932 ACTTTGCAGTTTTCGCCAAAATTC 59.966 37.500 0.00 0.00 33.98 2.17
89 90 3.938334 ACTTTGCAGTTTTCGCCAAAATT 59.062 34.783 0.00 0.00 33.98 1.82
90 91 3.309410 CACTTTGCAGTTTTCGCCAAAAT 59.691 39.130 0.00 0.00 33.98 1.82
91 92 2.670414 CACTTTGCAGTTTTCGCCAAAA 59.330 40.909 0.00 0.00 0.00 2.44
92 93 2.266554 CACTTTGCAGTTTTCGCCAAA 58.733 42.857 0.00 0.00 0.00 3.28
93 94 1.203523 ACACTTTGCAGTTTTCGCCAA 59.796 42.857 0.00 0.00 0.00 4.52
94 95 0.814457 ACACTTTGCAGTTTTCGCCA 59.186 45.000 0.00 0.00 0.00 5.69
95 96 1.587946 CAACACTTTGCAGTTTTCGCC 59.412 47.619 0.00 0.00 0.00 5.54
96 97 2.258755 ACAACACTTTGCAGTTTTCGC 58.741 42.857 0.00 0.00 36.00 4.70
97 98 3.758300 AGACAACACTTTGCAGTTTTCG 58.242 40.909 0.00 0.00 36.00 3.46
98 99 9.760660 CTATATAGACAACACTTTGCAGTTTTC 57.239 33.333 3.44 0.00 36.00 2.29
99 100 8.237267 GCTATATAGACAACACTTTGCAGTTTT 58.763 33.333 14.16 0.00 36.00 2.43
100 101 7.390440 TGCTATATAGACAACACTTTGCAGTTT 59.610 33.333 14.16 0.00 36.00 2.66
101 102 6.878923 TGCTATATAGACAACACTTTGCAGTT 59.121 34.615 14.16 0.00 36.00 3.16
102 103 6.406370 TGCTATATAGACAACACTTTGCAGT 58.594 36.000 14.16 0.00 36.00 4.40
103 104 6.908870 TGCTATATAGACAACACTTTGCAG 57.091 37.500 14.16 0.00 36.00 4.41
104 105 7.102993 TCTTGCTATATAGACAACACTTTGCA 58.897 34.615 14.16 0.00 36.00 4.08
105 106 7.539712 TCTTGCTATATAGACAACACTTTGC 57.460 36.000 14.16 0.00 36.00 3.68
106 107 7.278646 TGCTCTTGCTATATAGACAACACTTTG 59.721 37.037 14.16 5.08 40.48 2.77
107 108 7.331026 TGCTCTTGCTATATAGACAACACTTT 58.669 34.615 14.16 0.00 40.48 2.66
108 109 6.878317 TGCTCTTGCTATATAGACAACACTT 58.122 36.000 14.16 0.00 40.48 3.16
109 110 6.471233 TGCTCTTGCTATATAGACAACACT 57.529 37.500 14.16 0.00 40.48 3.55
110 111 7.307632 CCAATGCTCTTGCTATATAGACAACAC 60.308 40.741 14.16 7.62 40.48 3.32
111 112 6.707608 CCAATGCTCTTGCTATATAGACAACA 59.292 38.462 14.16 10.95 40.48 3.33
112 113 6.708054 ACCAATGCTCTTGCTATATAGACAAC 59.292 38.462 14.16 6.52 40.48 3.32
113 114 6.830912 ACCAATGCTCTTGCTATATAGACAA 58.169 36.000 14.16 14.50 40.48 3.18
114 115 6.425210 ACCAATGCTCTTGCTATATAGACA 57.575 37.500 14.16 8.16 40.48 3.41
115 116 5.872070 GGACCAATGCTCTTGCTATATAGAC 59.128 44.000 14.16 5.69 40.48 2.59
116 117 5.046304 GGGACCAATGCTCTTGCTATATAGA 60.046 44.000 14.16 0.00 40.48 1.98
117 118 5.181748 GGGACCAATGCTCTTGCTATATAG 58.818 45.833 5.30 5.30 40.48 1.31
118 119 4.322725 CGGGACCAATGCTCTTGCTATATA 60.323 45.833 0.00 0.00 40.48 0.86
119 120 3.557898 CGGGACCAATGCTCTTGCTATAT 60.558 47.826 0.00 0.00 40.48 0.86
120 121 2.224281 CGGGACCAATGCTCTTGCTATA 60.224 50.000 0.00 0.00 40.48 1.31
121 122 1.475751 CGGGACCAATGCTCTTGCTAT 60.476 52.381 0.00 0.00 40.48 2.97
122 123 0.107703 CGGGACCAATGCTCTTGCTA 60.108 55.000 0.00 0.00 40.48 3.49
123 124 1.377725 CGGGACCAATGCTCTTGCT 60.378 57.895 0.00 0.00 40.48 3.91
124 125 2.409870 CCGGGACCAATGCTCTTGC 61.410 63.158 0.00 0.00 40.20 4.01
125 126 0.609131 AACCGGGACCAATGCTCTTG 60.609 55.000 6.32 0.00 0.00 3.02
126 127 0.322546 GAACCGGGACCAATGCTCTT 60.323 55.000 6.32 0.00 0.00 2.85
127 128 1.299976 GAACCGGGACCAATGCTCT 59.700 57.895 6.32 0.00 0.00 4.09
128 129 2.106683 CGAACCGGGACCAATGCTC 61.107 63.158 6.32 0.00 0.00 4.26
129 130 2.046314 CGAACCGGGACCAATGCT 60.046 61.111 6.32 0.00 0.00 3.79
130 131 2.359478 ACGAACCGGGACCAATGC 60.359 61.111 6.32 0.00 0.00 3.56
131 132 1.004320 TCACGAACCGGGACCAATG 60.004 57.895 6.32 0.00 32.99 2.82
132 133 3.474000 TCACGAACCGGGACCAAT 58.526 55.556 6.32 0.00 32.99 3.16
137 138 0.810823 GTTTGTGTCACGAACCGGGA 60.811 55.000 21.22 0.00 36.68 5.14
138 139 1.644913 GTTTGTGTCACGAACCGGG 59.355 57.895 21.22 0.00 36.68 5.73
142 143 0.810823 TCCCGGTTTGTGTCACGAAC 60.811 55.000 23.01 23.01 40.84 3.95
143 144 0.810823 GTCCCGGTTTGTGTCACGAA 60.811 55.000 0.00 1.17 0.00 3.85
144 145 1.227321 GTCCCGGTTTGTGTCACGA 60.227 57.895 0.00 0.00 0.00 4.35
145 146 0.032403 TAGTCCCGGTTTGTGTCACG 59.968 55.000 0.00 0.00 0.00 4.35
146 147 2.243602 TTAGTCCCGGTTTGTGTCAC 57.756 50.000 0.00 0.00 0.00 3.67
147 148 2.773487 CATTAGTCCCGGTTTGTGTCA 58.227 47.619 0.00 0.00 0.00 3.58
148 149 1.467342 GCATTAGTCCCGGTTTGTGTC 59.533 52.381 0.00 0.00 0.00 3.67
149 150 1.530323 GCATTAGTCCCGGTTTGTGT 58.470 50.000 0.00 0.00 0.00 3.72
150 151 0.808755 GGCATTAGTCCCGGTTTGTG 59.191 55.000 0.00 0.00 0.00 3.33
151 152 0.323087 GGGCATTAGTCCCGGTTTGT 60.323 55.000 0.00 0.00 33.43 2.83
152 153 2.489040 GGGCATTAGTCCCGGTTTG 58.511 57.895 0.00 0.00 33.43 2.93
169 170 1.202769 TCAACCGGGACTAAAGGGGG 61.203 60.000 6.32 0.00 0.00 5.40
170 171 0.916809 ATCAACCGGGACTAAAGGGG 59.083 55.000 6.32 0.00 0.00 4.79
171 172 2.017113 GCATCAACCGGGACTAAAGGG 61.017 57.143 6.32 0.00 0.00 3.95
172 173 1.379527 GCATCAACCGGGACTAAAGG 58.620 55.000 6.32 0.00 0.00 3.11
173 174 1.339631 TGGCATCAACCGGGACTAAAG 60.340 52.381 6.32 0.00 0.00 1.85
174 175 0.693622 TGGCATCAACCGGGACTAAA 59.306 50.000 6.32 0.00 0.00 1.85
175 176 0.035820 GTGGCATCAACCGGGACTAA 60.036 55.000 6.32 0.00 0.00 2.24
176 177 1.600107 GTGGCATCAACCGGGACTA 59.400 57.895 6.32 0.00 0.00 2.59
177 178 2.351276 GTGGCATCAACCGGGACT 59.649 61.111 6.32 0.00 0.00 3.85
178 179 2.750237 GGTGGCATCAACCGGGAC 60.750 66.667 6.32 0.00 0.00 4.46
179 180 2.835049 TTGGTGGCATCAACCGGGA 61.835 57.895 9.58 0.00 0.00 5.14
180 181 2.282816 TTGGTGGCATCAACCGGG 60.283 61.111 9.58 0.00 0.00 5.73
181 182 2.961768 GTTGGTGGCATCAACCGG 59.038 61.111 29.00 0.00 38.71 5.28
184 185 2.635443 CCCGGTTGGTGGCATCAAC 61.635 63.158 30.75 30.75 42.53 3.18
185 186 2.282816 CCCGGTTGGTGGCATCAA 60.283 61.111 9.58 9.58 0.00 2.57
186 187 3.253061 TCCCGGTTGGTGGCATCA 61.253 61.111 0.00 0.00 34.77 3.07
187 188 2.750237 GTCCCGGTTGGTGGCATC 60.750 66.667 0.00 0.00 34.77 3.91
188 189 4.360405 GGTCCCGGTTGGTGGCAT 62.360 66.667 0.00 0.00 34.77 4.40
190 191 4.589675 TTGGTCCCGGTTGGTGGC 62.590 66.667 0.00 0.00 34.77 5.01
191 192 1.901464 CTTTGGTCCCGGTTGGTGG 60.901 63.158 0.00 0.00 34.77 4.61
192 193 1.901464 CCTTTGGTCCCGGTTGGTG 60.901 63.158 0.00 0.00 34.77 4.17
193 194 2.518933 CCTTTGGTCCCGGTTGGT 59.481 61.111 0.00 0.00 34.77 3.67
194 195 2.989253 GCCTTTGGTCCCGGTTGG 60.989 66.667 0.00 0.00 0.00 3.77
195 196 1.524008 GAAGCCTTTGGTCCCGGTTG 61.524 60.000 0.00 0.00 0.00 3.77
196 197 1.228459 GAAGCCTTTGGTCCCGGTT 60.228 57.895 0.00 0.00 0.00 4.44
197 198 1.716028 AAGAAGCCTTTGGTCCCGGT 61.716 55.000 0.00 0.00 0.00 5.28
198 199 0.539669 AAAGAAGCCTTTGGTCCCGG 60.540 55.000 0.00 0.00 40.83 5.73
199 200 1.328279 AAAAGAAGCCTTTGGTCCCG 58.672 50.000 0.00 0.00 41.46 5.14
200 201 3.306088 GCTAAAAAGAAGCCTTTGGTCCC 60.306 47.826 0.00 0.00 41.46 4.46
201 202 3.320826 TGCTAAAAAGAAGCCTTTGGTCC 59.679 43.478 0.00 0.00 41.46 4.46
202 203 4.550422 CTGCTAAAAAGAAGCCTTTGGTC 58.450 43.478 0.00 0.00 41.46 4.02
203 204 3.243873 GCTGCTAAAAAGAAGCCTTTGGT 60.244 43.478 0.00 0.00 41.46 3.67
204 205 3.320626 GCTGCTAAAAAGAAGCCTTTGG 58.679 45.455 0.00 0.00 41.46 3.28
210 211 3.320626 CTTTGGGCTGCTAAAAAGAAGC 58.679 45.455 13.31 0.00 39.73 3.86
211 212 3.573967 TCCTTTGGGCTGCTAAAAAGAAG 59.426 43.478 17.58 7.48 32.53 2.85
212 213 3.571590 TCCTTTGGGCTGCTAAAAAGAA 58.428 40.909 17.58 1.96 32.53 2.52
213 214 3.237268 TCCTTTGGGCTGCTAAAAAGA 57.763 42.857 17.58 8.47 32.53 2.52
214 215 4.248058 CAATCCTTTGGGCTGCTAAAAAG 58.752 43.478 0.00 7.33 0.00 2.27
215 216 4.270245 CAATCCTTTGGGCTGCTAAAAA 57.730 40.909 0.00 0.00 0.00 1.94
216 217 3.959535 CAATCCTTTGGGCTGCTAAAA 57.040 42.857 0.00 0.00 0.00 1.52
227 228 7.880160 TGTTAATATGTCTCCCAATCCTTTG 57.120 36.000 0.00 0.00 0.00 2.77
228 229 7.342026 GGTTGTTAATATGTCTCCCAATCCTTT 59.658 37.037 0.00 0.00 0.00 3.11
229 230 6.833933 GGTTGTTAATATGTCTCCCAATCCTT 59.166 38.462 0.00 0.00 0.00 3.36
241 242 9.745880 CACTTACTCGATAGGTTGTTAATATGT 57.254 33.333 0.00 0.00 0.00 2.29
246 247 6.209192 TGGACACTTACTCGATAGGTTGTTAA 59.791 38.462 0.00 0.00 0.00 2.01
247 248 5.711506 TGGACACTTACTCGATAGGTTGTTA 59.288 40.000 0.00 0.00 0.00 2.41
264 265 4.452455 CGAGCTTCTAAAACAATGGACACT 59.548 41.667 0.00 0.00 0.00 3.55
311 312 3.194005 TCAAAGTCACTCTGTTGTCCC 57.806 47.619 0.00 0.00 0.00 4.46
317 318 5.923204 AGAAGTTCATCAAAGTCACTCTGT 58.077 37.500 5.50 0.00 0.00 3.41
318 319 7.439356 TGTTAGAAGTTCATCAAAGTCACTCTG 59.561 37.037 5.50 0.00 0.00 3.35
319 320 7.500992 TGTTAGAAGTTCATCAAAGTCACTCT 58.499 34.615 5.50 0.00 0.00 3.24
329 330 6.514870 GCCATGTTGTTGTTAGAAGTTCATCA 60.515 38.462 5.50 0.00 0.00 3.07
341 342 2.362077 GTTCTCAGGCCATGTTGTTGTT 59.638 45.455 5.01 0.00 0.00 2.83
342 343 1.956477 GTTCTCAGGCCATGTTGTTGT 59.044 47.619 5.01 0.00 0.00 3.32
343 344 1.270550 GGTTCTCAGGCCATGTTGTTG 59.729 52.381 5.01 0.00 0.00 3.33
344 345 1.145738 AGGTTCTCAGGCCATGTTGTT 59.854 47.619 5.01 0.00 0.00 2.83
345 346 0.773644 AGGTTCTCAGGCCATGTTGT 59.226 50.000 5.01 0.00 0.00 3.32
346 347 1.915141 AAGGTTCTCAGGCCATGTTG 58.085 50.000 5.01 0.00 0.00 3.33
349 350 2.517959 TGAAAAGGTTCTCAGGCCATG 58.482 47.619 5.01 0.00 34.60 3.66
374 375 6.653989 TGGGATGGTTTTTGCTTTCTTTTTA 58.346 32.000 0.00 0.00 0.00 1.52
378 379 3.711190 ACTGGGATGGTTTTTGCTTTCTT 59.289 39.130 0.00 0.00 0.00 2.52
387 388 1.745827 CGGCGATACTGGGATGGTTTT 60.746 52.381 0.00 0.00 0.00 2.43
390 391 0.468585 TACGGCGATACTGGGATGGT 60.469 55.000 16.62 0.00 0.00 3.55
391 392 0.895530 ATACGGCGATACTGGGATGG 59.104 55.000 16.62 0.00 0.00 3.51
399 400 5.106237 ACCAAATCTAGAGATACGGCGATAC 60.106 44.000 16.62 3.69 33.73 2.24
400 401 5.008331 ACCAAATCTAGAGATACGGCGATA 58.992 41.667 16.62 2.29 33.73 2.92
405 406 4.341235 TGGTGACCAAATCTAGAGATACGG 59.659 45.833 0.00 5.86 33.73 4.02
407 408 5.453480 GGGTGGTGACCAAATCTAGAGATAC 60.453 48.000 5.57 0.00 45.25 2.24
408 409 4.654262 GGGTGGTGACCAAATCTAGAGATA 59.346 45.833 5.57 0.00 45.25 1.98
457 458 2.332654 GGCTCGATTGCCGGTTTGT 61.333 57.895 1.90 0.00 43.74 2.83
465 466 2.292794 TACCTCACCGGCTCGATTGC 62.293 60.000 0.00 0.00 35.61 3.56
466 467 0.249073 CTACCTCACCGGCTCGATTG 60.249 60.000 0.00 0.00 35.61 2.67
478 479 0.594602 CACGTGAACCGACTACCTCA 59.405 55.000 10.90 0.00 40.70 3.86
483 484 1.269206 GGTGAACACGTGAACCGACTA 60.269 52.381 25.01 0.00 40.70 2.59
484 485 0.529119 GGTGAACACGTGAACCGACT 60.529 55.000 25.01 0.00 40.70 4.18
505 506 1.033746 CAATGAATCGGTGGCCTGCT 61.034 55.000 3.32 0.00 0.00 4.24
506 507 1.434696 CAATGAATCGGTGGCCTGC 59.565 57.895 3.32 0.00 0.00 4.85
507 508 0.680921 ACCAATGAATCGGTGGCCTG 60.681 55.000 3.32 0.00 35.72 4.85
508 509 0.039618 AACCAATGAATCGGTGGCCT 59.960 50.000 3.32 0.00 35.08 5.19
510 511 1.173043 TGAACCAATGAATCGGTGGC 58.827 50.000 2.34 0.00 35.08 5.01
518 519 6.477053 TTTTCTCACCAATGAACCAATGAA 57.523 33.333 0.00 0.00 33.30 2.57
534 535 9.920946 ATAGCTTAAATATCCTGGTTTTTCTCA 57.079 29.630 0.00 0.00 0.00 3.27
589 592 0.811281 AATGCTAGCAACGCCTTTCC 59.189 50.000 23.54 0.00 0.00 3.13
596 637 1.075542 TCGAACCAATGCTAGCAACG 58.924 50.000 23.54 18.50 0.00 4.10
601 642 2.487934 CTGGGATCGAACCAATGCTAG 58.512 52.381 14.28 0.00 37.59 3.42
606 647 2.899303 AAACCTGGGATCGAACCAAT 57.101 45.000 14.28 2.51 37.59 3.16
611 652 3.062122 GTTGGTAAACCTGGGATCGAA 57.938 47.619 0.00 0.00 36.82 3.71
612 653 2.773993 GTTGGTAAACCTGGGATCGA 57.226 50.000 0.00 0.00 36.82 3.59
627 668 9.754382 CCAGAGAAATATTCATAAAATGGTTGG 57.246 33.333 0.00 0.00 0.00 3.77
656 697 8.680001 GCCTTCTCCGGTCTTTTAATATAAAAA 58.320 33.333 0.00 0.00 0.00 1.94
657 698 7.830201 TGCCTTCTCCGGTCTTTTAATATAAAA 59.170 33.333 0.00 0.00 0.00 1.52
658 699 7.340256 TGCCTTCTCCGGTCTTTTAATATAAA 58.660 34.615 0.00 0.00 0.00 1.40
659 700 6.891388 TGCCTTCTCCGGTCTTTTAATATAA 58.109 36.000 0.00 0.00 0.00 0.98
660 701 6.488769 TGCCTTCTCCGGTCTTTTAATATA 57.511 37.500 0.00 0.00 0.00 0.86
661 702 5.367945 TGCCTTCTCCGGTCTTTTAATAT 57.632 39.130 0.00 0.00 0.00 1.28
662 703 4.829872 TGCCTTCTCCGGTCTTTTAATA 57.170 40.909 0.00 0.00 0.00 0.98
663 704 3.713826 TGCCTTCTCCGGTCTTTTAAT 57.286 42.857 0.00 0.00 0.00 1.40
664 705 3.606687 GATGCCTTCTCCGGTCTTTTAA 58.393 45.455 0.00 0.00 0.00 1.52
665 706 2.418197 CGATGCCTTCTCCGGTCTTTTA 60.418 50.000 0.00 0.00 0.00 1.52
666 707 1.676014 CGATGCCTTCTCCGGTCTTTT 60.676 52.381 0.00 0.00 0.00 2.27
667 708 0.108138 CGATGCCTTCTCCGGTCTTT 60.108 55.000 0.00 0.00 0.00 2.52
668 709 1.517832 CGATGCCTTCTCCGGTCTT 59.482 57.895 0.00 0.00 0.00 3.01
669 710 2.427245 CCGATGCCTTCTCCGGTCT 61.427 63.158 0.00 0.00 37.40 3.85
670 711 2.107141 CCGATGCCTTCTCCGGTC 59.893 66.667 0.00 0.00 37.40 4.79
672 713 1.521681 GAACCGATGCCTTCTCCGG 60.522 63.158 0.00 0.00 46.65 5.14
673 714 1.521681 GGAACCGATGCCTTCTCCG 60.522 63.158 0.00 0.00 0.00 4.63
674 715 1.153147 GGGAACCGATGCCTTCTCC 60.153 63.158 0.00 0.00 40.86 3.71
675 716 4.542075 GGGAACCGATGCCTTCTC 57.458 61.111 0.00 0.00 40.86 2.87
699 740 1.365699 GCCGAGCGGTCTGATAAAAA 58.634 50.000 13.48 0.00 37.65 1.94
700 741 0.461339 GGCCGAGCGGTCTGATAAAA 60.461 55.000 13.48 0.00 36.84 1.52
701 742 1.143183 GGCCGAGCGGTCTGATAAA 59.857 57.895 13.48 0.00 36.84 1.40
702 743 2.792947 GGGCCGAGCGGTCTGATAA 61.793 63.158 13.65 0.00 40.34 1.75
703 744 3.224324 GGGCCGAGCGGTCTGATA 61.224 66.667 13.65 0.00 40.34 2.15
720 761 3.850740 GCAGAGTTTTAAAAACCGGGTCG 60.851 47.826 6.32 0.00 0.00 4.79
721 762 3.317149 AGCAGAGTTTTAAAAACCGGGTC 59.683 43.478 6.32 0.00 0.00 4.46
722 763 3.293337 AGCAGAGTTTTAAAAACCGGGT 58.707 40.909 6.32 0.00 0.00 5.28
723 764 3.608474 CGAGCAGAGTTTTAAAAACCGGG 60.608 47.826 6.32 0.00 0.00 5.73
724 765 3.002965 ACGAGCAGAGTTTTAAAAACCGG 59.997 43.478 0.00 0.00 0.00 5.28
725 766 3.966218 CACGAGCAGAGTTTTAAAAACCG 59.034 43.478 1.31 2.67 0.00 4.44
726 767 4.035909 TCCACGAGCAGAGTTTTAAAAACC 59.964 41.667 1.31 0.00 0.00 3.27
727 768 5.164606 TCCACGAGCAGAGTTTTAAAAAC 57.835 39.130 1.31 0.53 0.00 2.43
728 769 6.038825 TGAATCCACGAGCAGAGTTTTAAAAA 59.961 34.615 1.31 0.00 0.00 1.94
729 770 5.529430 TGAATCCACGAGCAGAGTTTTAAAA 59.471 36.000 0.00 0.00 0.00 1.52
730 771 5.049680 GTGAATCCACGAGCAGAGTTTTAAA 60.050 40.000 0.00 0.00 33.10 1.52
731 772 4.451096 GTGAATCCACGAGCAGAGTTTTAA 59.549 41.667 0.00 0.00 33.10 1.52
732 773 3.994392 GTGAATCCACGAGCAGAGTTTTA 59.006 43.478 0.00 0.00 33.10 1.52
733 774 2.808543 GTGAATCCACGAGCAGAGTTTT 59.191 45.455 0.00 0.00 33.10 2.43
734 775 2.417719 GTGAATCCACGAGCAGAGTTT 58.582 47.619 0.00 0.00 33.10 2.66
735 776 1.338200 GGTGAATCCACGAGCAGAGTT 60.338 52.381 0.00 0.00 44.09 3.01
736 777 0.247736 GGTGAATCCACGAGCAGAGT 59.752 55.000 0.00 0.00 44.09 3.24
737 778 0.247460 TGGTGAATCCACGAGCAGAG 59.753 55.000 0.00 0.00 44.09 3.35
738 779 2.361189 TGGTGAATCCACGAGCAGA 58.639 52.632 0.00 0.00 44.09 4.26
792 833 1.064685 ACCGAATGAAATGGAGGGGAC 60.065 52.381 0.00 0.00 0.00 4.46
851 896 4.803426 GGAGCGAGTGAGTGGGCG 62.803 72.222 0.00 0.00 0.00 6.13
870 924 2.079288 GGGGCTAAAGAGGGGGAGG 61.079 68.421 0.00 0.00 0.00 4.30
990 1060 1.228398 TCCCGCCATTGAGTTTGCA 60.228 52.632 0.00 0.00 0.00 4.08
994 1064 2.198304 GACCCTCCCGCCATTGAGTT 62.198 60.000 0.00 0.00 0.00 3.01
996 1066 1.987807 ATGACCCTCCCGCCATTGAG 61.988 60.000 0.00 0.00 0.00 3.02
997 1067 1.983119 GATGACCCTCCCGCCATTGA 61.983 60.000 0.00 0.00 0.00 2.57
1287 1358 5.415221 ACAGAAAGTATAACTCTGCAGAGC 58.585 41.667 37.78 23.45 45.79 4.09
1288 1359 8.574396 GCAGACAGAAAGTATAACTCTGCAGAG 61.574 44.444 36.57 36.57 44.93 3.35
1289 1360 6.625362 CAGACAGAAAGTATAACTCTGCAGA 58.375 40.000 17.19 17.19 40.23 4.26
1291 1362 5.171476 GCAGACAGAAAGTATAACTCTGCA 58.829 41.667 11.00 0.00 44.93 4.41
1292 1363 4.266502 CGCAGACAGAAAGTATAACTCTGC 59.733 45.833 6.66 6.66 40.23 4.26
1293 1364 5.641709 TCGCAGACAGAAAGTATAACTCTG 58.358 41.667 5.75 5.75 41.93 3.35
1294 1365 5.899120 TCGCAGACAGAAAGTATAACTCT 57.101 39.130 0.00 0.00 0.00 3.24
1295 1366 7.513814 CGAAATCGCAGACAGAAAGTATAACTC 60.514 40.741 0.00 0.00 42.51 3.01
1296 1367 6.253727 CGAAATCGCAGACAGAAAGTATAACT 59.746 38.462 0.00 0.00 42.51 2.24
1297 1368 6.034683 ACGAAATCGCAGACAGAAAGTATAAC 59.965 38.462 2.15 0.00 42.51 1.89
1298 1369 6.097356 ACGAAATCGCAGACAGAAAGTATAA 58.903 36.000 2.15 0.00 42.51 0.98
1299 1370 5.647589 ACGAAATCGCAGACAGAAAGTATA 58.352 37.500 2.15 0.00 42.51 1.47
1300 1371 4.495422 ACGAAATCGCAGACAGAAAGTAT 58.505 39.130 2.15 0.00 42.51 2.12
1301 1372 3.909430 ACGAAATCGCAGACAGAAAGTA 58.091 40.909 2.15 0.00 42.51 2.24
1302 1373 2.731976 GACGAAATCGCAGACAGAAAGT 59.268 45.455 2.15 0.00 42.51 2.66
1304 1375 2.066262 GGACGAAATCGCAGACAGAAA 58.934 47.619 2.15 0.00 42.51 2.52
1305 1376 1.710013 GGACGAAATCGCAGACAGAA 58.290 50.000 2.15 0.00 42.51 3.02
1307 1378 1.991430 CGGACGAAATCGCAGACAG 59.009 57.895 2.15 0.00 42.51 3.51
1308 1379 4.162640 CGGACGAAATCGCAGACA 57.837 55.556 2.15 0.00 42.51 3.41
1355 1443 1.293924 CAGGCTCAGAACGCAATAGG 58.706 55.000 0.00 0.00 0.00 2.57
1499 2532 6.820656 ACATTTAGCTCTATCTTGTTCAGTGG 59.179 38.462 0.00 0.00 0.00 4.00
1517 2550 7.169645 GCCATGGCATGTTTGTTATACATTTAG 59.830 37.037 32.08 5.53 41.49 1.85
1519 2552 5.816777 GCCATGGCATGTTTGTTATACATTT 59.183 36.000 32.08 0.00 41.49 2.32
1615 2667 2.837532 ACAAACATTGCCATTCACCC 57.162 45.000 0.00 0.00 0.00 4.61
1618 2670 5.668471 TCAAAGAACAAACATTGCCATTCA 58.332 33.333 0.00 0.00 0.00 2.57
1627 2679 9.313118 GGAACTTAACAATCAAAGAACAAACAT 57.687 29.630 0.00 0.00 0.00 2.71
1629 2681 8.592155 GTGGAACTTAACAATCAAAGAACAAAC 58.408 33.333 0.00 0.00 0.00 2.93
1644 2696 2.415512 GTCATCGCAGGTGGAACTTAAC 59.584 50.000 0.00 0.00 36.74 2.01
1646 2698 1.066430 GGTCATCGCAGGTGGAACTTA 60.066 52.381 0.00 0.00 36.74 2.24
1658 2710 7.868415 AGACATATTTTAGACTAAGGTCATCGC 59.132 37.037 0.00 0.00 44.36 4.58
1664 2716 9.203163 AGCAGTAGACATATTTTAGACTAAGGT 57.797 33.333 0.00 0.00 0.00 3.50
1665 2717 9.685828 GAGCAGTAGACATATTTTAGACTAAGG 57.314 37.037 0.00 0.00 0.00 2.69
1735 3001 3.524095 ACAATGGAACAATGGAGTCCA 57.476 42.857 15.88 15.88 44.80 4.02
1739 3005 6.748132 ACAAACTAACAATGGAACAATGGAG 58.252 36.000 0.00 0.00 44.80 3.86
1740 3006 6.723298 ACAAACTAACAATGGAACAATGGA 57.277 33.333 0.00 0.00 44.80 3.41
1741 3007 7.759433 GGATACAAACTAACAATGGAACAATGG 59.241 37.037 0.00 0.00 44.80 3.16
1881 3897 6.370994 TGGCAATTTACCATGTTTATTTGCTG 59.629 34.615 15.17 0.00 30.29 4.41
1948 3973 4.074970 AGACAGCTTATGGACTGGTTTTG 58.925 43.478 0.00 0.00 38.25 2.44
2047 4185 9.489084 TGCTTATGATAAGGACATACATAACAC 57.511 33.333 13.60 0.00 32.51 3.32
2287 4478 0.039708 GTTGCTGAGCTTCTGTTGCC 60.040 55.000 5.83 0.00 0.00 4.52
2499 4690 3.297134 ACTGATTCTGGTGTGGTTTGT 57.703 42.857 0.00 0.00 0.00 2.83
2599 4801 6.713731 ACTGGAATCCTTTTTCCTTACCTA 57.286 37.500 0.00 0.00 44.63 3.08
2621 4828 3.279434 AGTGAAACAAGGTCACCAGAAC 58.721 45.455 0.00 0.00 45.39 3.01
2637 4844 0.527113 CCATCATGGCGCAAAGTGAA 59.473 50.000 10.83 0.00 0.00 3.18
2684 4891 8.506196 ACTATGGACATATACTACAAACCCAT 57.494 34.615 0.00 0.00 36.11 4.00
2709 4926 8.028354 CCATCTTAACATAATGCTGACAAACAA 58.972 33.333 0.00 0.00 0.00 2.83
2763 4983 4.515191 CGAAACTGATCACCCTTTCAAGAA 59.485 41.667 12.80 0.00 0.00 2.52
2796 5040 5.982356 TCCTTCTTCACTACCATCATTCAG 58.018 41.667 0.00 0.00 0.00 3.02
2896 5140 5.194432 TCTTCTCAGGTAGTACCATGAGAC 58.806 45.833 30.81 6.66 44.46 3.36
2975 5227 6.837312 TCCCTTTCTTTGACAATCTCTACAA 58.163 36.000 0.00 0.00 0.00 2.41
2984 5236 4.451900 GAGTCACTCCCTTTCTTTGACAA 58.548 43.478 0.00 0.00 39.26 3.18
3031 5285 7.765360 CCATGCACAGTTCAAATGGTAAAATAT 59.235 33.333 0.00 0.00 34.35 1.28
3098 5393 6.011476 AGGAACGTACAGAAGTTCTAGAAC 57.989 41.667 25.24 25.24 44.33 3.01
3173 5468 6.140303 ACATGAACATGGCAGATATTTCAC 57.860 37.500 17.25 0.00 42.91 3.18
3261 6102 3.935203 ACATGCGACATGGTAAAGAAGAG 59.065 43.478 19.30 0.00 0.00 2.85
3299 6140 3.335579 GAGGAAGACGTAGCACCAAAAT 58.664 45.455 0.00 0.00 0.00 1.82
3360 6201 1.107114 ACCATTTTCCGCACAACACA 58.893 45.000 0.00 0.00 0.00 3.72
3367 6208 5.461032 AACAATCTTTACCATTTTCCGCA 57.539 34.783 0.00 0.00 0.00 5.69
3406 6249 2.038557 AGCTGTTGTTTCCGGTAGTCAT 59.961 45.455 0.00 0.00 0.00 3.06
3407 6250 1.414919 AGCTGTTGTTTCCGGTAGTCA 59.585 47.619 0.00 0.00 0.00 3.41
3422 6265 2.224606 CACAAAGTCATCACCAGCTGT 58.775 47.619 13.81 0.00 0.00 4.40
3423 6266 2.224606 ACACAAAGTCATCACCAGCTG 58.775 47.619 6.78 6.78 0.00 4.24
3426 6269 4.126437 TGTGTACACAAAGTCATCACCAG 58.874 43.478 26.07 0.00 38.56 4.00
3454 6299 1.677942 TGCAACTCTGACATGCACAA 58.322 45.000 8.16 0.00 44.52 3.33
3459 6304 4.395231 ACATGAAGATGCAACTCTGACATG 59.605 41.667 22.29 22.29 41.42 3.21
3471 6316 4.878397 ACTAGCTTGGTTACATGAAGATGC 59.122 41.667 0.00 0.00 32.14 3.91
3477 6322 7.470935 TGTTACTACTAGCTTGGTTACATGA 57.529 36.000 0.00 0.00 0.00 3.07
3485 6330 5.854010 TCTGGATGTTACTACTAGCTTGG 57.146 43.478 0.00 0.00 0.00 3.61
3493 6338 5.023533 TGCTTGGATCTGGATGTTACTAC 57.976 43.478 0.00 0.00 0.00 2.73
3498 6343 3.159213 TGTTGCTTGGATCTGGATGTT 57.841 42.857 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.