Multiple sequence alignment - TraesCS5A01G411700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G411700 chr5A 100.000 3358 0 0 1 3358 600235882 600239239 0.000000e+00 6202.0
1 TraesCS5A01G411700 chr5A 88.724 1348 71 26 1003 2313 600361474 600362777 0.000000e+00 1572.0
2 TraesCS5A01G411700 chr5A 83.500 1703 125 67 655 2303 600437965 600439565 0.000000e+00 1445.0
3 TraesCS5A01G411700 chr5A 75.140 358 71 15 2519 2868 600209957 600210304 5.800000e-33 152.0
4 TraesCS5A01G411700 chr5A 89.320 103 7 4 2605 2705 600362949 600363049 3.520000e-25 126.0
5 TraesCS5A01G411700 chr5B 88.743 1670 128 29 1363 2985 589677262 589678918 0.000000e+00 1988.0
6 TraesCS5A01G411700 chr5B 85.773 1462 115 36 1003 2431 589894272 589895673 0.000000e+00 1461.0
7 TraesCS5A01G411700 chr5B 84.453 1087 106 34 681 1742 589998031 589999079 0.000000e+00 1013.0
8 TraesCS5A01G411700 chr5B 92.405 632 38 6 624 1252 589676472 589677096 0.000000e+00 893.0
9 TraesCS5A01G411700 chr5B 83.877 552 44 18 1748 2286 589999115 589999634 5.040000e-133 484.0
10 TraesCS5A01G411700 chr5B 87.413 143 9 6 2559 2694 589895731 589895871 4.490000e-34 156.0
11 TraesCS5A01G411700 chr5B 87.850 107 13 0 685 791 589893984 589894090 3.520000e-25 126.0
12 TraesCS5A01G411700 chr5D 90.205 1266 71 17 1743 2980 481184408 481185648 0.000000e+00 1602.0
13 TraesCS5A01G411700 chr5D 85.672 1340 106 32 1003 2313 481302941 481304223 0.000000e+00 1332.0
14 TraesCS5A01G411700 chr5D 97.537 609 15 0 654 1262 481183324 481183932 0.000000e+00 1042.0
15 TraesCS5A01G411700 chr5D 89.278 457 24 14 1293 1742 481183933 481184371 1.760000e-152 549.0
16 TraesCS5A01G411700 chr5D 89.189 444 32 6 1301 1742 481425928 481426357 1.060000e-149 540.0
17 TraesCS5A01G411700 chr5D 82.187 567 53 15 1747 2303 481426392 481426920 8.550000e-121 444.0
18 TraesCS5A01G411700 chr5D 92.164 268 14 4 1003 1266 481425509 481425773 4.090000e-99 372.0
19 TraesCS5A01G411700 chr5D 82.129 263 39 6 685 944 481302685 481302942 5.640000e-53 219.0
20 TraesCS5A01G411700 chr5D 77.410 363 51 18 2519 2868 481164428 481164772 1.590000e-43 187.0
21 TraesCS5A01G411700 chr5D 87.097 155 10 9 2559 2705 481304376 481304528 2.070000e-37 167.0
22 TraesCS5A01G411700 chr5D 79.339 242 18 12 655 865 481425151 481425391 1.260000e-29 141.0
23 TraesCS5A01G411700 chr5D 86.517 89 6 1 2349 2431 481304229 481304317 3.570000e-15 93.5
24 TraesCS5A01G411700 chr6D 88.057 628 64 7 1 622 414470920 414471542 0.000000e+00 734.0
25 TraesCS5A01G411700 chr6D 87.460 622 68 8 1 620 413041245 413041858 0.000000e+00 708.0
26 TraesCS5A01G411700 chr6D 96.377 138 5 0 3011 3148 421801527 421801390 9.370000e-56 228.0
27 TraesCS5A01G411700 chr4B 87.864 618 64 8 4 617 94105686 94105076 0.000000e+00 715.0
28 TraesCS5A01G411700 chr4B 82.296 514 64 10 1774 2284 663941330 663940841 1.440000e-113 420.0
29 TraesCS5A01G411700 chr3A 87.805 615 70 3 1 615 154026995 154026386 0.000000e+00 715.0
30 TraesCS5A01G411700 chr7A 87.338 616 72 4 1 615 183646069 183645459 0.000000e+00 701.0
31 TraesCS5A01G411700 chr7A 97.778 135 3 0 3013 3147 17879022 17878888 2.010000e-57 233.0
32 TraesCS5A01G411700 chr1A 86.893 618 76 5 1 617 493972372 493972985 0.000000e+00 688.0
33 TraesCS5A01G411700 chr1A 95.745 141 6 0 3007 3147 213589095 213588955 9.370000e-56 228.0
34 TraesCS5A01G411700 chr1D 86.851 616 76 3 1 615 468238388 468237777 0.000000e+00 684.0
35 TraesCS5A01G411700 chr3B 86.851 616 74 7 1 615 490602482 490603091 0.000000e+00 682.0
36 TraesCS5A01G411700 chr3D 86.753 619 69 8 1 617 575931623 575931016 0.000000e+00 676.0
37 TraesCS5A01G411700 chr3D 95.745 141 6 0 3007 3147 603715166 603715026 9.370000e-56 228.0
38 TraesCS5A01G411700 chr4A 97.143 140 4 0 3011 3150 195105812 195105673 1.560000e-58 237.0
39 TraesCS5A01G411700 chr4A 96.429 140 5 0 3007 3146 645773892 645773753 7.250000e-57 231.0
40 TraesCS5A01G411700 chr1B 96.479 142 5 0 3006 3147 668867919 668867778 5.600000e-58 235.0
41 TraesCS5A01G411700 chr2A 96.479 142 4 1 3004 3145 54690031 54689891 2.010000e-57 233.0
42 TraesCS5A01G411700 chr2B 95.775 142 5 1 3006 3146 550157374 550157515 9.370000e-56 228.0
43 TraesCS5A01G411700 chr7B 85.345 116 14 3 3243 3356 68864925 68865039 2.120000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G411700 chr5A 600235882 600239239 3357 False 6202.000000 6202 100.00000 1 3358 1 chr5A.!!$F2 3357
1 TraesCS5A01G411700 chr5A 600437965 600439565 1600 False 1445.000000 1445 83.50000 655 2303 1 chr5A.!!$F3 1648
2 TraesCS5A01G411700 chr5A 600361474 600363049 1575 False 849.000000 1572 89.02200 1003 2705 2 chr5A.!!$F4 1702
3 TraesCS5A01G411700 chr5B 589676472 589678918 2446 False 1440.500000 1988 90.57400 624 2985 2 chr5B.!!$F1 2361
4 TraesCS5A01G411700 chr5B 589998031 589999634 1603 False 748.500000 1013 84.16500 681 2286 2 chr5B.!!$F3 1605
5 TraesCS5A01G411700 chr5B 589893984 589895871 1887 False 581.000000 1461 87.01200 685 2694 3 chr5B.!!$F2 2009
6 TraesCS5A01G411700 chr5D 481183324 481185648 2324 False 1064.333333 1602 92.34000 654 2980 3 chr5D.!!$F2 2326
7 TraesCS5A01G411700 chr5D 481302685 481304528 1843 False 452.875000 1332 85.35375 685 2705 4 chr5D.!!$F3 2020
8 TraesCS5A01G411700 chr5D 481425151 481426920 1769 False 374.250000 540 85.71975 655 2303 4 chr5D.!!$F4 1648
9 TraesCS5A01G411700 chr6D 414470920 414471542 622 False 734.000000 734 88.05700 1 622 1 chr6D.!!$F2 621
10 TraesCS5A01G411700 chr6D 413041245 413041858 613 False 708.000000 708 87.46000 1 620 1 chr6D.!!$F1 619
11 TraesCS5A01G411700 chr4B 94105076 94105686 610 True 715.000000 715 87.86400 4 617 1 chr4B.!!$R1 613
12 TraesCS5A01G411700 chr3A 154026386 154026995 609 True 715.000000 715 87.80500 1 615 1 chr3A.!!$R1 614
13 TraesCS5A01G411700 chr7A 183645459 183646069 610 True 701.000000 701 87.33800 1 615 1 chr7A.!!$R2 614
14 TraesCS5A01G411700 chr1A 493972372 493972985 613 False 688.000000 688 86.89300 1 617 1 chr1A.!!$F1 616
15 TraesCS5A01G411700 chr1D 468237777 468238388 611 True 684.000000 684 86.85100 1 615 1 chr1D.!!$R1 614
16 TraesCS5A01G411700 chr3B 490602482 490603091 609 False 682.000000 682 86.85100 1 615 1 chr3B.!!$F1 614
17 TraesCS5A01G411700 chr3D 575931016 575931623 607 True 676.000000 676 86.75300 1 617 1 chr3D.!!$R1 616

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
565 575 0.102844 CCATTTTTGCCCGCATCGAT 59.897 50.000 0.00 0.00 0.00 3.59 F
1285 1408 1.083209 CATCATTCATCGTGCGCCG 60.083 57.895 4.18 8.64 38.13 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1907 2235 0.322277 ACGACTCGAAGCTCCCTGTA 60.322 55.0 5.20 0.00 0.0 2.74 R
3129 3552 0.037734 CCCCTAAGGCCTTGTTCGTT 59.962 55.0 28.77 1.45 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 183 2.356278 CCCTTGGCCTTGCTGCTA 59.644 61.111 3.32 0.00 0.00 3.49
220 228 2.906897 GCTGTGGTGGTGGTGGTG 60.907 66.667 0.00 0.00 0.00 4.17
221 229 2.203337 CTGTGGTGGTGGTGGTGG 60.203 66.667 0.00 0.00 0.00 4.61
222 230 4.514585 TGTGGTGGTGGTGGTGGC 62.515 66.667 0.00 0.00 0.00 5.01
271 280 1.804372 GCTTGCTAGATGTGGAGGACG 60.804 57.143 0.00 0.00 0.00 4.79
481 491 2.810439 TTTGAGACGCAAATTTGGGG 57.190 45.000 31.28 17.61 44.44 4.96
482 492 1.698506 TTGAGACGCAAATTTGGGGT 58.301 45.000 31.28 21.33 44.44 4.95
561 571 1.296068 CCACCATTTTTGCCCGCAT 59.704 52.632 0.00 0.00 0.00 4.73
565 575 0.102844 CCATTTTTGCCCGCATCGAT 59.897 50.000 0.00 0.00 0.00 3.59
618 628 3.376546 GCCTCATTGGAGTTGCTCTAAAG 59.623 47.826 0.00 0.00 39.64 1.85
620 630 5.435291 CCTCATTGGAGTTGCTCTAAAGAT 58.565 41.667 0.00 0.00 39.64 2.40
621 631 5.884792 CCTCATTGGAGTTGCTCTAAAGATT 59.115 40.000 0.00 0.00 39.64 2.40
622 632 6.038050 CCTCATTGGAGTTGCTCTAAAGATTC 59.962 42.308 0.00 0.00 39.64 2.52
623 633 6.475504 TCATTGGAGTTGCTCTAAAGATTCA 58.524 36.000 0.00 0.00 34.82 2.57
624 634 6.942005 TCATTGGAGTTGCTCTAAAGATTCAA 59.058 34.615 0.00 0.00 34.82 2.69
625 635 6.808008 TTGGAGTTGCTCTAAAGATTCAAG 57.192 37.500 0.00 0.00 28.38 3.02
626 636 5.248640 TGGAGTTGCTCTAAAGATTCAAGG 58.751 41.667 0.00 0.00 0.00 3.61
627 637 4.637977 GGAGTTGCTCTAAAGATTCAAGGG 59.362 45.833 0.00 0.00 0.00 3.95
628 638 5.491982 GAGTTGCTCTAAAGATTCAAGGGA 58.508 41.667 0.00 0.00 0.00 4.20
629 639 6.072199 AGTTGCTCTAAAGATTCAAGGGAT 57.928 37.500 0.00 0.00 0.00 3.85
630 640 6.488715 AGTTGCTCTAAAGATTCAAGGGATT 58.511 36.000 0.00 0.00 0.00 3.01
636 646 6.595682 TCTAAAGATTCAAGGGATTGGCTAG 58.404 40.000 0.00 0.00 0.00 3.42
642 652 4.591321 TCAAGGGATTGGCTAGAAATGT 57.409 40.909 0.00 0.00 0.00 2.71
648 658 8.571336 CAAGGGATTGGCTAGAAATGTTATTAG 58.429 37.037 0.00 0.00 0.00 1.73
650 660 8.673251 AGGGATTGGCTAGAAATGTTATTAGAT 58.327 33.333 0.00 0.00 0.00 1.98
742 763 1.543802 AGAGAAGTCAGACCAAGCGAG 59.456 52.381 0.00 0.00 0.00 5.03
770 792 5.990668 ACTGGAATTATGTCACCTCCTTAC 58.009 41.667 0.00 0.00 0.00 2.34
865 925 9.650714 TCCTACCCTATATATACAACGCATATT 57.349 33.333 0.00 0.00 0.00 1.28
1269 1392 1.509373 AGCTCCTTCTCTCCATGCAT 58.491 50.000 0.00 0.00 0.00 3.96
1270 1393 1.417145 AGCTCCTTCTCTCCATGCATC 59.583 52.381 0.00 0.00 0.00 3.91
1271 1394 1.140452 GCTCCTTCTCTCCATGCATCA 59.860 52.381 0.00 0.00 0.00 3.07
1272 1395 2.224572 GCTCCTTCTCTCCATGCATCAT 60.225 50.000 0.00 0.00 0.00 2.45
1285 1408 1.083209 CATCATTCATCGTGCGCCG 60.083 57.895 4.18 8.64 38.13 6.46
1334 1583 8.940397 TTTCTGGGACAAAGATTTTCTATCTT 57.060 30.769 0.00 0.00 38.70 2.40
1360 1625 2.132740 GCAATCGTCCACTTGCAAAA 57.867 45.000 0.00 0.00 45.50 2.44
1887 2215 4.854924 CATCCGCCGCCATCACCA 62.855 66.667 0.00 0.00 0.00 4.17
1907 2235 1.153823 CGCCGACTCGAACTCCAAT 60.154 57.895 0.00 0.00 0.00 3.16
1910 2238 1.135199 GCCGACTCGAACTCCAATACA 60.135 52.381 0.00 0.00 0.00 2.29
2075 2430 1.340889 GACACCATGCACAACCAACAT 59.659 47.619 0.00 0.00 0.00 2.71
2084 2439 1.047801 ACAACCAACATTTCCAGGGC 58.952 50.000 0.00 0.00 0.00 5.19
2097 2461 2.044946 AGGGCCAATGGAACGCTC 60.045 61.111 6.18 0.00 0.00 5.03
2099 2463 3.508840 GGCCAATGGAACGCTCCG 61.509 66.667 2.05 0.00 45.85 4.63
2101 2465 2.436646 CCAATGGAACGCTCCGCT 60.437 61.111 0.00 0.00 45.85 5.52
2102 2466 2.753966 CCAATGGAACGCTCCGCTG 61.754 63.158 0.00 0.00 45.85 5.18
2261 2634 0.031314 CGAGGATGATGGAGGTGACG 59.969 60.000 0.00 0.00 0.00 4.35
2308 2681 1.939974 TCATACGGTTCATCAGCAGC 58.060 50.000 0.00 0.00 0.00 5.25
2321 2701 2.282745 GCAGCAAACAGAGGGCCT 60.283 61.111 5.25 5.25 0.00 5.19
2346 2726 2.682494 TACGCACCCTCCACTCCC 60.682 66.667 0.00 0.00 0.00 4.30
2347 2727 3.233919 TACGCACCCTCCACTCCCT 62.234 63.158 0.00 0.00 0.00 4.20
2598 2992 0.943673 TTACTGTTCCGACGTCGACA 59.056 50.000 37.65 30.51 43.02 4.35
2600 2994 0.317603 ACTGTTCCGACGTCGACAAG 60.318 55.000 37.65 27.51 43.02 3.16
2602 2996 1.008079 GTTCCGACGTCGACAAGGT 60.008 57.895 37.65 5.22 43.02 3.50
2603 2997 0.238289 GTTCCGACGTCGACAAGGTA 59.762 55.000 37.65 12.63 43.02 3.08
2723 3134 2.667536 AAGCAGCGGCAGTCACTG 60.668 61.111 12.44 0.00 44.61 3.66
2747 3158 1.995626 AGCAGCCGTAATCCCCTGT 60.996 57.895 0.00 0.00 0.00 4.00
2780 3195 5.257108 GTCGAGACGAACAGTATACAAGAG 58.743 45.833 5.50 0.00 37.72 2.85
2790 3205 6.945938 ACAGTATACAAGAGAACGATAGCT 57.054 37.500 5.50 0.00 42.67 3.32
2793 3208 7.148052 ACAGTATACAAGAGAACGATAGCTGTT 60.148 37.037 5.50 0.00 42.67 3.16
2858 3278 7.209475 ACTTGTGGTTGAACTAAATCATTTGG 58.791 34.615 0.00 0.00 0.00 3.28
2893 3313 6.650807 TCTTGTCCTTGTGAACATGTATCTTC 59.349 38.462 0.00 0.00 0.00 2.87
2904 3325 9.102757 GTGAACATGTATCTTCATAATGTCACT 57.897 33.333 0.00 0.00 32.60 3.41
2917 3338 9.904198 TTCATAATGTCACTGAAATCCTAATCA 57.096 29.630 0.00 0.00 0.00 2.57
2928 3351 6.575267 TGAAATCCTAATCATGTGCAATTGG 58.425 36.000 7.72 0.00 0.00 3.16
2934 3357 5.981315 CCTAATCATGTGCAATTGGAATGAC 59.019 40.000 19.22 3.48 30.53 3.06
2989 3412 2.887790 GGGGCTCCCAAAACTGATC 58.112 57.895 7.34 0.00 44.65 2.92
2990 3413 0.684479 GGGGCTCCCAAAACTGATCC 60.684 60.000 7.34 0.00 44.65 3.36
2991 3414 0.332972 GGGCTCCCAAAACTGATCCT 59.667 55.000 0.00 0.00 35.81 3.24
2992 3415 1.683319 GGGCTCCCAAAACTGATCCTC 60.683 57.143 0.00 0.00 35.81 3.71
2993 3416 1.373570 GCTCCCAAAACTGATCCTCG 58.626 55.000 0.00 0.00 0.00 4.63
2994 3417 1.066143 GCTCCCAAAACTGATCCTCGA 60.066 52.381 0.00 0.00 0.00 4.04
2995 3418 2.420687 GCTCCCAAAACTGATCCTCGAT 60.421 50.000 0.00 0.00 0.00 3.59
2996 3419 3.462021 CTCCCAAAACTGATCCTCGATC 58.538 50.000 0.00 0.00 39.31 3.69
2997 3420 2.170607 TCCCAAAACTGATCCTCGATCC 59.829 50.000 0.00 0.00 38.20 3.36
2998 3421 2.565841 CCAAAACTGATCCTCGATCCC 58.434 52.381 0.00 0.00 38.20 3.85
2999 3422 2.565841 CAAAACTGATCCTCGATCCCC 58.434 52.381 0.00 0.00 38.20 4.81
3000 3423 2.171448 CAAAACTGATCCTCGATCCCCT 59.829 50.000 0.00 0.00 38.20 4.79
3001 3424 1.418334 AACTGATCCTCGATCCCCTG 58.582 55.000 0.00 0.00 38.20 4.45
3002 3425 0.558220 ACTGATCCTCGATCCCCTGA 59.442 55.000 0.00 0.00 38.20 3.86
3003 3426 1.062886 ACTGATCCTCGATCCCCTGAA 60.063 52.381 0.00 0.00 38.20 3.02
3004 3427 1.617850 CTGATCCTCGATCCCCTGAAG 59.382 57.143 0.00 0.00 38.20 3.02
3005 3428 1.217942 TGATCCTCGATCCCCTGAAGA 59.782 52.381 0.00 0.00 38.20 2.87
3006 3429 2.158249 TGATCCTCGATCCCCTGAAGAT 60.158 50.000 0.00 0.00 38.20 2.40
3007 3430 2.002505 TCCTCGATCCCCTGAAGATC 57.997 55.000 0.00 0.00 37.39 2.75
3008 3431 0.972883 CCTCGATCCCCTGAAGATCC 59.027 60.000 0.00 0.00 37.45 3.36
3009 3432 1.482177 CCTCGATCCCCTGAAGATCCT 60.482 57.143 0.00 0.00 37.45 3.24
3010 3433 2.324541 CTCGATCCCCTGAAGATCCTT 58.675 52.381 0.00 0.00 37.45 3.36
3011 3434 2.703007 CTCGATCCCCTGAAGATCCTTT 59.297 50.000 0.00 0.00 37.45 3.11
3012 3435 3.898123 CTCGATCCCCTGAAGATCCTTTA 59.102 47.826 0.00 0.00 37.45 1.85
3013 3436 3.898123 TCGATCCCCTGAAGATCCTTTAG 59.102 47.826 0.00 0.00 37.45 1.85
3014 3437 3.007398 CGATCCCCTGAAGATCCTTTAGG 59.993 52.174 9.73 9.73 37.45 2.69
3015 3438 2.127708 TCCCCTGAAGATCCTTTAGGC 58.872 52.381 10.88 0.00 34.44 3.93
3016 3439 1.143889 CCCCTGAAGATCCTTTAGGCC 59.856 57.143 10.88 0.00 34.44 5.19
3017 3440 2.131023 CCCTGAAGATCCTTTAGGCCT 58.869 52.381 11.78 11.78 34.44 5.19
3018 3441 2.511637 CCCTGAAGATCCTTTAGGCCTT 59.488 50.000 12.58 0.00 33.00 4.35
3019 3442 3.549794 CCTGAAGATCCTTTAGGCCTTG 58.450 50.000 12.58 1.17 31.39 3.61
3020 3443 3.054065 CCTGAAGATCCTTTAGGCCTTGT 60.054 47.826 12.58 0.00 31.39 3.16
3021 3444 4.568592 CCTGAAGATCCTTTAGGCCTTGTT 60.569 45.833 12.58 0.00 31.39 2.83
3022 3445 4.589908 TGAAGATCCTTTAGGCCTTGTTC 58.410 43.478 12.58 6.70 31.39 3.18
3023 3446 3.268023 AGATCCTTTAGGCCTTGTTCG 57.732 47.619 12.58 0.00 34.44 3.95
3024 3447 2.092914 AGATCCTTTAGGCCTTGTTCGG 60.093 50.000 12.58 5.17 34.44 4.30
3025 3448 1.061546 TCCTTTAGGCCTTGTTCGGT 58.938 50.000 12.58 0.00 34.44 4.69
3026 3449 1.422402 TCCTTTAGGCCTTGTTCGGTT 59.578 47.619 12.58 0.00 34.44 4.44
3027 3450 1.539827 CCTTTAGGCCTTGTTCGGTTG 59.460 52.381 12.58 0.00 0.00 3.77
3028 3451 2.500229 CTTTAGGCCTTGTTCGGTTGA 58.500 47.619 12.58 0.00 0.00 3.18
3029 3452 2.178912 TTAGGCCTTGTTCGGTTGAG 57.821 50.000 12.58 0.00 0.00 3.02
3030 3453 0.323629 TAGGCCTTGTTCGGTTGAGG 59.676 55.000 12.58 0.00 0.00 3.86
3031 3454 1.228154 GGCCTTGTTCGGTTGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
3032 3455 1.515521 GGCCTTGTTCGGTTGAGGTG 61.516 60.000 0.00 0.00 0.00 4.00
3033 3456 1.515521 GCCTTGTTCGGTTGAGGTGG 61.516 60.000 0.00 0.00 0.00 4.61
3034 3457 0.179029 CCTTGTTCGGTTGAGGTGGT 60.179 55.000 0.00 0.00 0.00 4.16
3035 3458 1.675552 CTTGTTCGGTTGAGGTGGTT 58.324 50.000 0.00 0.00 0.00 3.67
3036 3459 2.021457 CTTGTTCGGTTGAGGTGGTTT 58.979 47.619 0.00 0.00 0.00 3.27
3037 3460 2.131776 TGTTCGGTTGAGGTGGTTTT 57.868 45.000 0.00 0.00 0.00 2.43
3038 3461 2.448453 TGTTCGGTTGAGGTGGTTTTT 58.552 42.857 0.00 0.00 0.00 1.94
3039 3462 2.164624 TGTTCGGTTGAGGTGGTTTTTG 59.835 45.455 0.00 0.00 0.00 2.44
3040 3463 2.421751 TCGGTTGAGGTGGTTTTTGA 57.578 45.000 0.00 0.00 0.00 2.69
3041 3464 2.724454 TCGGTTGAGGTGGTTTTTGAA 58.276 42.857 0.00 0.00 0.00 2.69
3042 3465 2.685897 TCGGTTGAGGTGGTTTTTGAAG 59.314 45.455 0.00 0.00 0.00 3.02
3043 3466 2.223711 CGGTTGAGGTGGTTTTTGAAGG 60.224 50.000 0.00 0.00 0.00 3.46
3044 3467 2.102420 GGTTGAGGTGGTTTTTGAAGGG 59.898 50.000 0.00 0.00 0.00 3.95
3045 3468 2.080654 TGAGGTGGTTTTTGAAGGGG 57.919 50.000 0.00 0.00 0.00 4.79
3046 3469 1.571457 TGAGGTGGTTTTTGAAGGGGA 59.429 47.619 0.00 0.00 0.00 4.81
3047 3470 2.023888 TGAGGTGGTTTTTGAAGGGGAA 60.024 45.455 0.00 0.00 0.00 3.97
3048 3471 3.239449 GAGGTGGTTTTTGAAGGGGAAT 58.761 45.455 0.00 0.00 0.00 3.01
3049 3472 2.972021 AGGTGGTTTTTGAAGGGGAATG 59.028 45.455 0.00 0.00 0.00 2.67
3050 3473 2.038426 GGTGGTTTTTGAAGGGGAATGG 59.962 50.000 0.00 0.00 0.00 3.16
3051 3474 1.696884 TGGTTTTTGAAGGGGAATGGC 59.303 47.619 0.00 0.00 0.00 4.40
3052 3475 1.696884 GGTTTTTGAAGGGGAATGGCA 59.303 47.619 0.00 0.00 0.00 4.92
3053 3476 2.289631 GGTTTTTGAAGGGGAATGGCAG 60.290 50.000 0.00 0.00 0.00 4.85
3054 3477 1.643310 TTTTGAAGGGGAATGGCAGG 58.357 50.000 0.00 0.00 0.00 4.85
3055 3478 0.252193 TTTGAAGGGGAATGGCAGGG 60.252 55.000 0.00 0.00 0.00 4.45
3056 3479 1.442886 TTGAAGGGGAATGGCAGGGT 61.443 55.000 0.00 0.00 0.00 4.34
3057 3480 1.388133 GAAGGGGAATGGCAGGGTT 59.612 57.895 0.00 0.00 0.00 4.11
3058 3481 0.252239 GAAGGGGAATGGCAGGGTTT 60.252 55.000 0.00 0.00 0.00 3.27
3059 3482 0.545071 AAGGGGAATGGCAGGGTTTG 60.545 55.000 0.00 0.00 0.00 2.93
3060 3483 1.078347 GGGGAATGGCAGGGTTTGA 59.922 57.895 0.00 0.00 0.00 2.69
3061 3484 0.972471 GGGGAATGGCAGGGTTTGAG 60.972 60.000 0.00 0.00 0.00 3.02
3062 3485 0.039618 GGGAATGGCAGGGTTTGAGA 59.960 55.000 0.00 0.00 0.00 3.27
3063 3486 1.467920 GGAATGGCAGGGTTTGAGAG 58.532 55.000 0.00 0.00 0.00 3.20
3064 3487 1.467920 GAATGGCAGGGTTTGAGAGG 58.532 55.000 0.00 0.00 0.00 3.69
3065 3488 0.040204 AATGGCAGGGTTTGAGAGGG 59.960 55.000 0.00 0.00 0.00 4.30
3066 3489 0.846427 ATGGCAGGGTTTGAGAGGGA 60.846 55.000 0.00 0.00 0.00 4.20
3067 3490 0.846427 TGGCAGGGTTTGAGAGGGAT 60.846 55.000 0.00 0.00 0.00 3.85
3068 3491 0.332972 GGCAGGGTTTGAGAGGGATT 59.667 55.000 0.00 0.00 0.00 3.01
3069 3492 1.564348 GGCAGGGTTTGAGAGGGATTA 59.436 52.381 0.00 0.00 0.00 1.75
3070 3493 2.422093 GGCAGGGTTTGAGAGGGATTAG 60.422 54.545 0.00 0.00 0.00 1.73
3071 3494 2.505819 GCAGGGTTTGAGAGGGATTAGA 59.494 50.000 0.00 0.00 0.00 2.10
3072 3495 3.137360 GCAGGGTTTGAGAGGGATTAGAT 59.863 47.826 0.00 0.00 0.00 1.98
3073 3496 4.745172 GCAGGGTTTGAGAGGGATTAGATC 60.745 50.000 0.00 0.00 0.00 2.75
3085 3508 4.706842 GGATTAGATCCCTTACAAGGCA 57.293 45.455 2.22 0.00 45.10 4.75
3086 3509 5.048846 GGATTAGATCCCTTACAAGGCAA 57.951 43.478 2.22 0.00 45.10 4.52
3087 3510 5.445964 GGATTAGATCCCTTACAAGGCAAA 58.554 41.667 2.22 0.00 45.10 3.68
3088 3511 5.891551 GGATTAGATCCCTTACAAGGCAAAA 59.108 40.000 2.22 0.00 45.10 2.44
3089 3512 6.551227 GGATTAGATCCCTTACAAGGCAAAAT 59.449 38.462 2.22 0.00 45.10 1.82
3090 3513 7.255625 GGATTAGATCCCTTACAAGGCAAAATC 60.256 40.741 2.22 6.80 45.10 2.17
3091 3514 4.281657 AGATCCCTTACAAGGCAAAATCC 58.718 43.478 2.22 0.00 45.10 3.01
3092 3515 3.825908 TCCCTTACAAGGCAAAATCCT 57.174 42.857 2.22 0.00 45.10 3.24
3093 3516 3.697166 TCCCTTACAAGGCAAAATCCTC 58.303 45.455 2.22 0.00 45.10 3.71
3094 3517 3.333680 TCCCTTACAAGGCAAAATCCTCT 59.666 43.478 2.22 0.00 45.10 3.69
3095 3518 3.696548 CCCTTACAAGGCAAAATCCTCTC 59.303 47.826 2.22 0.00 45.10 3.20
3096 3519 3.696548 CCTTACAAGGCAAAATCCTCTCC 59.303 47.826 0.00 0.00 39.76 3.71
3097 3520 2.978156 ACAAGGCAAAATCCTCTCCA 57.022 45.000 0.00 0.00 34.82 3.86
3098 3521 3.243359 ACAAGGCAAAATCCTCTCCAA 57.757 42.857 0.00 0.00 34.82 3.53
3099 3522 3.782992 ACAAGGCAAAATCCTCTCCAAT 58.217 40.909 0.00 0.00 34.82 3.16
3100 3523 3.766051 ACAAGGCAAAATCCTCTCCAATC 59.234 43.478 0.00 0.00 34.82 2.67
3101 3524 3.023939 AGGCAAAATCCTCTCCAATCC 57.976 47.619 0.00 0.00 0.00 3.01
3102 3525 2.312741 AGGCAAAATCCTCTCCAATCCA 59.687 45.455 0.00 0.00 0.00 3.41
3103 3526 2.428530 GGCAAAATCCTCTCCAATCCAC 59.571 50.000 0.00 0.00 0.00 4.02
3104 3527 3.359950 GCAAAATCCTCTCCAATCCACT 58.640 45.455 0.00 0.00 0.00 4.00
3105 3528 3.379688 GCAAAATCCTCTCCAATCCACTC 59.620 47.826 0.00 0.00 0.00 3.51
3106 3529 3.941704 AAATCCTCTCCAATCCACTCC 57.058 47.619 0.00 0.00 0.00 3.85
3107 3530 2.575921 ATCCTCTCCAATCCACTCCA 57.424 50.000 0.00 0.00 0.00 3.86
3108 3531 2.342406 TCCTCTCCAATCCACTCCAA 57.658 50.000 0.00 0.00 0.00 3.53
3109 3532 2.850833 TCCTCTCCAATCCACTCCAAT 58.149 47.619 0.00 0.00 0.00 3.16
3110 3533 2.774234 TCCTCTCCAATCCACTCCAATC 59.226 50.000 0.00 0.00 0.00 2.67
3111 3534 2.158696 CCTCTCCAATCCACTCCAATCC 60.159 54.545 0.00 0.00 0.00 3.01
3112 3535 1.846439 TCTCCAATCCACTCCAATCCC 59.154 52.381 0.00 0.00 0.00 3.85
3113 3536 0.926293 TCCAATCCACTCCAATCCCC 59.074 55.000 0.00 0.00 0.00 4.81
3114 3537 0.929244 CCAATCCACTCCAATCCCCT 59.071 55.000 0.00 0.00 0.00 4.79
3115 3538 1.288932 CCAATCCACTCCAATCCCCTT 59.711 52.381 0.00 0.00 0.00 3.95
3116 3539 2.381911 CAATCCACTCCAATCCCCTTG 58.618 52.381 0.00 0.00 34.42 3.61
3131 3554 3.298686 CCCTTGGGAGGAGGATTAAAC 57.701 52.381 0.00 0.00 46.74 2.01
3132 3555 2.421529 CCCTTGGGAGGAGGATTAAACG 60.422 54.545 0.00 0.00 46.74 3.60
3133 3556 2.504175 CCTTGGGAGGAGGATTAAACGA 59.496 50.000 0.00 0.00 46.74 3.85
3134 3557 3.054655 CCTTGGGAGGAGGATTAAACGAA 60.055 47.826 0.00 0.00 46.74 3.85
3135 3558 3.622166 TGGGAGGAGGATTAAACGAAC 57.378 47.619 0.00 0.00 0.00 3.95
3136 3559 2.907696 TGGGAGGAGGATTAAACGAACA 59.092 45.455 0.00 0.00 0.00 3.18
3137 3560 3.328343 TGGGAGGAGGATTAAACGAACAA 59.672 43.478 0.00 0.00 0.00 2.83
3138 3561 3.939592 GGGAGGAGGATTAAACGAACAAG 59.060 47.826 0.00 0.00 0.00 3.16
3139 3562 3.939592 GGAGGAGGATTAAACGAACAAGG 59.060 47.826 0.00 0.00 0.00 3.61
3140 3563 3.344515 AGGAGGATTAAACGAACAAGGC 58.655 45.455 0.00 0.00 0.00 4.35
3141 3564 2.422479 GGAGGATTAAACGAACAAGGCC 59.578 50.000 0.00 0.00 0.00 5.19
3142 3565 3.344515 GAGGATTAAACGAACAAGGCCT 58.655 45.455 0.00 0.00 0.00 5.19
3143 3566 3.756963 GAGGATTAAACGAACAAGGCCTT 59.243 43.478 13.78 13.78 0.00 4.35
3144 3567 4.913784 AGGATTAAACGAACAAGGCCTTA 58.086 39.130 20.00 0.00 0.00 2.69
3145 3568 4.941873 AGGATTAAACGAACAAGGCCTTAG 59.058 41.667 20.00 15.05 0.00 2.18
3146 3569 4.095932 GGATTAAACGAACAAGGCCTTAGG 59.904 45.833 20.00 9.74 0.00 2.69
3147 3570 1.905637 AAACGAACAAGGCCTTAGGG 58.094 50.000 20.00 8.91 0.00 3.53
3148 3571 0.037734 AACGAACAAGGCCTTAGGGG 59.962 55.000 20.00 8.49 38.36 4.79
3149 3572 1.077716 CGAACAAGGCCTTAGGGGG 60.078 63.158 20.00 8.06 35.12 5.40
3160 3583 2.945456 CCTTAGGGGGCATTTCTAACC 58.055 52.381 0.00 0.00 0.00 2.85
3161 3584 2.572290 CTTAGGGGGCATTTCTAACCG 58.428 52.381 0.00 0.00 0.00 4.44
3162 3585 1.882308 TAGGGGGCATTTCTAACCGA 58.118 50.000 0.00 0.00 0.00 4.69
3163 3586 1.222567 AGGGGGCATTTCTAACCGAT 58.777 50.000 0.00 0.00 0.00 4.18
3164 3587 1.143073 AGGGGGCATTTCTAACCGATC 59.857 52.381 0.00 0.00 0.00 3.69
3165 3588 1.605753 GGGGCATTTCTAACCGATCC 58.394 55.000 0.00 0.00 0.00 3.36
3166 3589 1.605753 GGGCATTTCTAACCGATCCC 58.394 55.000 0.00 0.00 0.00 3.85
3167 3590 1.143073 GGGCATTTCTAACCGATCCCT 59.857 52.381 0.00 0.00 0.00 4.20
3168 3591 2.222027 GGCATTTCTAACCGATCCCTG 58.778 52.381 0.00 0.00 0.00 4.45
3169 3592 2.158813 GGCATTTCTAACCGATCCCTGA 60.159 50.000 0.00 0.00 0.00 3.86
3170 3593 3.496870 GGCATTTCTAACCGATCCCTGAT 60.497 47.826 0.00 0.00 0.00 2.90
3171 3594 3.748568 GCATTTCTAACCGATCCCTGATC 59.251 47.826 0.00 0.00 35.88 2.92
3172 3595 4.319177 CATTTCTAACCGATCCCTGATCC 58.681 47.826 0.00 0.00 35.83 3.36
3173 3596 1.617322 TCTAACCGATCCCTGATCCG 58.383 55.000 0.00 0.00 35.83 4.18
3174 3597 0.603569 CTAACCGATCCCTGATCCGG 59.396 60.000 0.00 0.00 38.08 5.14
3175 3598 1.469335 TAACCGATCCCTGATCCGGC 61.469 60.000 0.00 0.00 36.75 6.13
3176 3599 4.363990 CCGATCCCTGATCCGGCG 62.364 72.222 0.00 0.00 35.83 6.46
3177 3600 3.606662 CGATCCCTGATCCGGCGT 61.607 66.667 6.01 0.00 35.83 5.68
3178 3601 2.822399 GATCCCTGATCCGGCGTT 59.178 61.111 6.01 0.00 33.37 4.84
3179 3602 1.802337 CGATCCCTGATCCGGCGTTA 61.802 60.000 6.01 0.00 35.83 3.18
3180 3603 0.038159 GATCCCTGATCCGGCGTTAG 60.038 60.000 6.01 0.00 33.37 2.34
3181 3604 0.469331 ATCCCTGATCCGGCGTTAGA 60.469 55.000 6.01 0.00 0.00 2.10
3182 3605 1.107538 TCCCTGATCCGGCGTTAGAG 61.108 60.000 6.01 0.00 0.00 2.43
3183 3606 1.107538 CCCTGATCCGGCGTTAGAGA 61.108 60.000 6.01 0.00 0.00 3.10
3184 3607 0.744874 CCTGATCCGGCGTTAGAGAA 59.255 55.000 6.01 0.00 0.00 2.87
3185 3608 1.269309 CCTGATCCGGCGTTAGAGAAG 60.269 57.143 6.01 0.00 0.00 2.85
3186 3609 1.405821 CTGATCCGGCGTTAGAGAAGT 59.594 52.381 6.01 0.00 0.00 3.01
3187 3610 2.617308 CTGATCCGGCGTTAGAGAAGTA 59.383 50.000 6.01 0.00 0.00 2.24
3188 3611 3.018856 TGATCCGGCGTTAGAGAAGTAA 58.981 45.455 6.01 0.00 0.00 2.24
3189 3612 3.635373 TGATCCGGCGTTAGAGAAGTAAT 59.365 43.478 6.01 0.00 0.00 1.89
3190 3613 4.098960 TGATCCGGCGTTAGAGAAGTAATT 59.901 41.667 6.01 0.00 0.00 1.40
3191 3614 4.460948 TCCGGCGTTAGAGAAGTAATTT 57.539 40.909 6.01 0.00 0.00 1.82
3192 3615 4.427312 TCCGGCGTTAGAGAAGTAATTTC 58.573 43.478 6.01 0.00 35.97 2.17
3193 3616 3.242248 CCGGCGTTAGAGAAGTAATTTCG 59.758 47.826 6.01 0.00 40.86 3.46
3194 3617 3.242248 CGGCGTTAGAGAAGTAATTTCGG 59.758 47.826 0.00 0.00 40.86 4.30
3195 3618 4.179298 GGCGTTAGAGAAGTAATTTCGGT 58.821 43.478 0.00 0.00 40.86 4.69
3196 3619 4.628766 GGCGTTAGAGAAGTAATTTCGGTT 59.371 41.667 0.00 0.00 40.86 4.44
3197 3620 5.121298 GGCGTTAGAGAAGTAATTTCGGTTT 59.879 40.000 0.00 0.00 40.86 3.27
3198 3621 6.347969 GGCGTTAGAGAAGTAATTTCGGTTTT 60.348 38.462 0.00 0.00 40.86 2.43
3199 3622 7.148590 GGCGTTAGAGAAGTAATTTCGGTTTTA 60.149 37.037 0.00 0.00 40.86 1.52
3200 3623 7.685712 GCGTTAGAGAAGTAATTTCGGTTTTAC 59.314 37.037 0.00 0.00 40.86 2.01
3201 3624 8.919661 CGTTAGAGAAGTAATTTCGGTTTTACT 58.080 33.333 0.00 0.00 40.86 2.24
3203 3626 9.985730 TTAGAGAAGTAATTTCGGTTTTACTCA 57.014 29.630 0.00 0.00 40.86 3.41
3205 3628 9.152595 AGAGAAGTAATTTCGGTTTTACTCATC 57.847 33.333 0.00 6.82 40.86 2.92
3206 3629 9.152595 GAGAAGTAATTTCGGTTTTACTCATCT 57.847 33.333 5.64 6.04 40.86 2.90
3211 3634 9.845305 GTAATTTCGGTTTTACTCATCTAATCG 57.155 33.333 0.00 0.00 0.00 3.34
3212 3635 6.897259 TTTCGGTTTTACTCATCTAATCGG 57.103 37.500 0.00 0.00 0.00 4.18
3213 3636 4.365723 TCGGTTTTACTCATCTAATCGGC 58.634 43.478 0.00 0.00 0.00 5.54
3214 3637 4.116961 CGGTTTTACTCATCTAATCGGCA 58.883 43.478 0.00 0.00 0.00 5.69
3215 3638 4.025979 CGGTTTTACTCATCTAATCGGCAC 60.026 45.833 0.00 0.00 0.00 5.01
3216 3639 4.272748 GGTTTTACTCATCTAATCGGCACC 59.727 45.833 0.00 0.00 0.00 5.01
3217 3640 3.746045 TTACTCATCTAATCGGCACCC 57.254 47.619 0.00 0.00 0.00 4.61
3235 3658 4.299796 GGCCAAGCCCCTGAACCA 62.300 66.667 0.00 0.00 44.06 3.67
3236 3659 2.203625 GCCAAGCCCCTGAACCAA 60.204 61.111 0.00 0.00 0.00 3.67
3237 3660 1.836604 GCCAAGCCCCTGAACCAAA 60.837 57.895 0.00 0.00 0.00 3.28
3238 3661 1.194121 GCCAAGCCCCTGAACCAAAT 61.194 55.000 0.00 0.00 0.00 2.32
3239 3662 1.351076 CCAAGCCCCTGAACCAAATT 58.649 50.000 0.00 0.00 0.00 1.82
3240 3663 1.002315 CCAAGCCCCTGAACCAAATTG 59.998 52.381 0.00 0.00 0.00 2.32
3241 3664 1.969923 CAAGCCCCTGAACCAAATTGA 59.030 47.619 0.00 0.00 0.00 2.57
3242 3665 1.928868 AGCCCCTGAACCAAATTGAG 58.071 50.000 0.00 0.00 0.00 3.02
3243 3666 1.428912 AGCCCCTGAACCAAATTGAGA 59.571 47.619 0.00 0.00 0.00 3.27
3244 3667 2.158325 AGCCCCTGAACCAAATTGAGAA 60.158 45.455 0.00 0.00 0.00 2.87
3245 3668 2.232208 GCCCCTGAACCAAATTGAGAAG 59.768 50.000 0.00 0.00 0.00 2.85
3246 3669 2.827921 CCCCTGAACCAAATTGAGAAGG 59.172 50.000 0.00 0.00 0.00 3.46
3247 3670 3.500289 CCCCTGAACCAAATTGAGAAGGA 60.500 47.826 0.00 0.00 0.00 3.36
3248 3671 4.347607 CCCTGAACCAAATTGAGAAGGAT 58.652 43.478 0.00 0.00 0.00 3.24
3249 3672 5.509498 CCCTGAACCAAATTGAGAAGGATA 58.491 41.667 0.00 0.00 0.00 2.59
3250 3673 5.951747 CCCTGAACCAAATTGAGAAGGATAA 59.048 40.000 0.00 0.00 0.00 1.75
3251 3674 6.608808 CCCTGAACCAAATTGAGAAGGATAAT 59.391 38.462 0.00 0.00 0.00 1.28
3252 3675 7.124750 CCCTGAACCAAATTGAGAAGGATAATT 59.875 37.037 0.00 0.00 0.00 1.40
3253 3676 8.534496 CCTGAACCAAATTGAGAAGGATAATTT 58.466 33.333 0.00 0.00 35.14 1.82
3273 3696 6.607004 ATTTATCCTCCACTACTTATCCCG 57.393 41.667 0.00 0.00 0.00 5.14
3274 3697 1.700955 TCCTCCACTACTTATCCCGC 58.299 55.000 0.00 0.00 0.00 6.13
3275 3698 0.680061 CCTCCACTACTTATCCCGCC 59.320 60.000 0.00 0.00 0.00 6.13
3276 3699 0.680061 CTCCACTACTTATCCCGCCC 59.320 60.000 0.00 0.00 0.00 6.13
3277 3700 0.761702 TCCACTACTTATCCCGCCCC 60.762 60.000 0.00 0.00 0.00 5.80
3278 3701 0.763223 CCACTACTTATCCCGCCCCT 60.763 60.000 0.00 0.00 0.00 4.79
3279 3702 1.481802 CCACTACTTATCCCGCCCCTA 60.482 57.143 0.00 0.00 0.00 3.53
3280 3703 2.537143 CACTACTTATCCCGCCCCTAT 58.463 52.381 0.00 0.00 0.00 2.57
3281 3704 3.565010 CCACTACTTATCCCGCCCCTATA 60.565 52.174 0.00 0.00 0.00 1.31
3282 3705 4.287552 CACTACTTATCCCGCCCCTATAT 58.712 47.826 0.00 0.00 0.00 0.86
3283 3706 4.715297 CACTACTTATCCCGCCCCTATATT 59.285 45.833 0.00 0.00 0.00 1.28
3284 3707 5.189145 CACTACTTATCCCGCCCCTATATTT 59.811 44.000 0.00 0.00 0.00 1.40
3285 3708 4.569719 ACTTATCCCGCCCCTATATTTG 57.430 45.455 0.00 0.00 0.00 2.32
3286 3709 3.279434 CTTATCCCGCCCCTATATTTGC 58.721 50.000 0.00 0.00 0.00 3.68
3287 3710 1.372501 ATCCCGCCCCTATATTTGCT 58.627 50.000 0.00 0.00 0.00 3.91
3288 3711 0.690762 TCCCGCCCCTATATTTGCTC 59.309 55.000 0.00 0.00 0.00 4.26
3289 3712 0.673644 CCCGCCCCTATATTTGCTCG 60.674 60.000 0.00 0.00 0.00 5.03
3290 3713 0.673644 CCGCCCCTATATTTGCTCGG 60.674 60.000 0.00 0.00 0.00 4.63
3291 3714 1.298859 CGCCCCTATATTTGCTCGGC 61.299 60.000 0.00 0.00 0.00 5.54
3292 3715 0.960861 GCCCCTATATTTGCTCGGCC 60.961 60.000 0.00 0.00 0.00 6.13
3293 3716 0.673644 CCCCTATATTTGCTCGGCCG 60.674 60.000 22.12 22.12 0.00 6.13
3294 3717 1.298859 CCCTATATTTGCTCGGCCGC 61.299 60.000 23.51 8.23 0.00 6.53
3295 3718 0.320771 CCTATATTTGCTCGGCCGCT 60.321 55.000 23.51 2.75 0.00 5.52
3296 3719 1.067142 CCTATATTTGCTCGGCCGCTA 60.067 52.381 23.51 2.44 0.00 4.26
3297 3720 1.993370 CTATATTTGCTCGGCCGCTAC 59.007 52.381 23.51 12.86 0.00 3.58
3298 3721 0.393077 ATATTTGCTCGGCCGCTACT 59.607 50.000 23.51 5.09 0.00 2.57
3299 3722 0.529773 TATTTGCTCGGCCGCTACTG 60.530 55.000 23.51 8.87 0.00 2.74
3300 3723 2.521958 ATTTGCTCGGCCGCTACTGT 62.522 55.000 23.51 1.63 0.00 3.55
3301 3724 2.725203 TTTGCTCGGCCGCTACTGTT 62.725 55.000 23.51 0.00 0.00 3.16
3302 3725 2.434359 GCTCGGCCGCTACTGTTT 60.434 61.111 23.51 0.00 0.00 2.83
3303 3726 2.740714 GCTCGGCCGCTACTGTTTG 61.741 63.158 23.51 2.59 0.00 2.93
3304 3727 2.047655 TCGGCCGCTACTGTTTGG 60.048 61.111 23.51 0.00 0.00 3.28
3305 3728 2.047655 CGGCCGCTACTGTTTGGA 60.048 61.111 14.67 0.00 0.00 3.53
3306 3729 2.100631 CGGCCGCTACTGTTTGGAG 61.101 63.158 14.67 0.00 0.00 3.86
3307 3730 1.745489 GGCCGCTACTGTTTGGAGG 60.745 63.158 0.00 0.00 0.00 4.30
3308 3731 1.295423 GCCGCTACTGTTTGGAGGA 59.705 57.895 0.00 0.00 0.00 3.71
3309 3732 0.321298 GCCGCTACTGTTTGGAGGAA 60.321 55.000 0.00 0.00 0.00 3.36
3310 3733 1.880646 GCCGCTACTGTTTGGAGGAAA 60.881 52.381 0.00 0.00 0.00 3.13
3311 3734 2.500229 CCGCTACTGTTTGGAGGAAAA 58.500 47.619 0.00 0.00 0.00 2.29
3312 3735 2.882137 CCGCTACTGTTTGGAGGAAAAA 59.118 45.455 0.00 0.00 0.00 1.94
3327 3750 3.231133 AAAAATCCCCTCCCCTCCA 57.769 52.632 0.00 0.00 0.00 3.86
3328 3751 1.711684 AAAAATCCCCTCCCCTCCAT 58.288 50.000 0.00 0.00 0.00 3.41
3329 3752 1.711684 AAAATCCCCTCCCCTCCATT 58.288 50.000 0.00 0.00 0.00 3.16
3330 3753 0.936691 AAATCCCCTCCCCTCCATTG 59.063 55.000 0.00 0.00 0.00 2.82
3331 3754 1.659035 AATCCCCTCCCCTCCATTGC 61.659 60.000 0.00 0.00 0.00 3.56
3332 3755 3.825623 CCCCTCCCCTCCATTGCC 61.826 72.222 0.00 0.00 0.00 4.52
3333 3756 2.697644 CCCTCCCCTCCATTGCCT 60.698 66.667 0.00 0.00 0.00 4.75
3334 3757 2.761465 CCCTCCCCTCCATTGCCTC 61.761 68.421 0.00 0.00 0.00 4.70
3335 3758 2.002977 CCTCCCCTCCATTGCCTCA 61.003 63.158 0.00 0.00 0.00 3.86
3336 3759 1.225704 CTCCCCTCCATTGCCTCAC 59.774 63.158 0.00 0.00 0.00 3.51
3337 3760 2.276309 CTCCCCTCCATTGCCTCACC 62.276 65.000 0.00 0.00 0.00 4.02
3338 3761 2.276740 CCCTCCATTGCCTCACCC 59.723 66.667 0.00 0.00 0.00 4.61
3339 3762 2.615465 CCCTCCATTGCCTCACCCA 61.615 63.158 0.00 0.00 0.00 4.51
3340 3763 1.379044 CCTCCATTGCCTCACCCAC 60.379 63.158 0.00 0.00 0.00 4.61
3341 3764 1.379044 CTCCATTGCCTCACCCACC 60.379 63.158 0.00 0.00 0.00 4.61
3342 3765 2.362889 CCATTGCCTCACCCACCC 60.363 66.667 0.00 0.00 0.00 4.61
3343 3766 2.440147 CATTGCCTCACCCACCCA 59.560 61.111 0.00 0.00 0.00 4.51
3344 3767 1.978617 CATTGCCTCACCCACCCAC 60.979 63.158 0.00 0.00 0.00 4.61
3345 3768 2.162906 ATTGCCTCACCCACCCACT 61.163 57.895 0.00 0.00 0.00 4.00
3346 3769 2.142292 ATTGCCTCACCCACCCACTC 62.142 60.000 0.00 0.00 0.00 3.51
3347 3770 2.930562 GCCTCACCCACCCACTCT 60.931 66.667 0.00 0.00 0.00 3.24
3348 3771 2.960688 GCCTCACCCACCCACTCTC 61.961 68.421 0.00 0.00 0.00 3.20
3349 3772 2.650116 CCTCACCCACCCACTCTCG 61.650 68.421 0.00 0.00 0.00 4.04
3350 3773 3.302347 CTCACCCACCCACTCTCGC 62.302 68.421 0.00 0.00 0.00 5.03
3351 3774 4.742201 CACCCACCCACTCTCGCG 62.742 72.222 0.00 0.00 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 131 1.076438 CCCTTTCCCCTTGGAGTTCT 58.924 55.000 0.00 0.00 43.07 3.01
176 183 3.764466 CTCTTCTCCGGCGCCAGT 61.764 66.667 28.98 0.00 0.00 4.00
221 229 4.770874 TCGCCGGCAAACCCTAGC 62.771 66.667 28.98 0.00 0.00 3.42
222 230 2.818274 GTCGCCGGCAAACCCTAG 60.818 66.667 28.98 7.38 0.00 3.02
267 275 0.317938 CGTCCTCATCCGAATCGTCC 60.318 60.000 0.82 0.00 0.00 4.79
271 280 1.301009 GGCCGTCCTCATCCGAATC 60.301 63.158 0.00 0.00 0.00 2.52
317 326 4.796231 GTCAGCGACGGCGGTCAT 62.796 66.667 14.98 8.96 46.64 3.06
411 420 4.373116 GCGCCTTCTCGGTGTCCA 62.373 66.667 0.00 0.00 45.36 4.02
618 628 5.595952 ACATTTCTAGCCAATCCCTTGAATC 59.404 40.000 0.00 0.00 34.04 2.52
620 630 4.934356 ACATTTCTAGCCAATCCCTTGAA 58.066 39.130 0.00 0.00 34.04 2.69
621 631 4.591321 ACATTTCTAGCCAATCCCTTGA 57.409 40.909 0.00 0.00 34.04 3.02
622 632 6.966534 ATAACATTTCTAGCCAATCCCTTG 57.033 37.500 0.00 0.00 0.00 3.61
623 633 8.502738 TCTAATAACATTTCTAGCCAATCCCTT 58.497 33.333 0.00 0.00 0.00 3.95
624 634 8.045720 TCTAATAACATTTCTAGCCAATCCCT 57.954 34.615 0.00 0.00 0.00 4.20
625 635 8.734386 CATCTAATAACATTTCTAGCCAATCCC 58.266 37.037 0.00 0.00 0.00 3.85
626 636 8.734386 CCATCTAATAACATTTCTAGCCAATCC 58.266 37.037 0.00 0.00 0.00 3.01
627 637 9.289782 ACCATCTAATAACATTTCTAGCCAATC 57.710 33.333 0.00 0.00 0.00 2.67
629 639 9.555727 GTACCATCTAATAACATTTCTAGCCAA 57.444 33.333 0.00 0.00 0.00 4.52
630 640 8.710239 TGTACCATCTAATAACATTTCTAGCCA 58.290 33.333 0.00 0.00 0.00 4.75
636 646 8.620416 TGCATGTGTACCATCTAATAACATTTC 58.380 33.333 0.00 0.00 0.00 2.17
642 652 6.038161 GTGCTTGCATGTGTACCATCTAATAA 59.962 38.462 0.00 0.00 0.00 1.40
648 658 1.811965 TGTGCTTGCATGTGTACCATC 59.188 47.619 0.00 0.00 0.00 3.51
650 660 1.685148 TTGTGCTTGCATGTGTACCA 58.315 45.000 0.00 0.00 0.00 3.25
742 763 6.049790 GGAGGTGACATAATTCCAGTCTAAC 58.950 44.000 0.00 0.00 33.56 2.34
770 792 1.449246 CGAGGGCTCTGCAAGAAGG 60.449 63.158 0.00 0.00 46.34 3.46
865 925 4.347876 TGGATCTTCTTCCTTGTGTTGAGA 59.652 41.667 0.00 0.00 36.68 3.27
867 927 4.705110 TGGATCTTCTTCCTTGTGTTGA 57.295 40.909 0.00 0.00 36.68 3.18
1285 1408 1.089920 ATTGCACTTGATCGAGCCAC 58.910 50.000 10.09 0.48 0.00 5.01
1887 2215 3.745803 GGAGTTCGAGTCGGCGGT 61.746 66.667 13.54 0.00 0.00 5.68
1907 2235 0.322277 ACGACTCGAAGCTCCCTGTA 60.322 55.000 5.20 0.00 0.00 2.74
1910 2238 2.400158 CGACGACTCGAAGCTCCCT 61.400 63.158 5.20 0.00 43.06 4.20
2030 2382 3.503363 TGTAGAAGAAATTGCTGGTGCTG 59.497 43.478 0.00 0.00 40.48 4.41
2031 2383 3.754965 TGTAGAAGAAATTGCTGGTGCT 58.245 40.909 0.00 0.00 40.48 4.40
2032 2384 3.119708 CCTGTAGAAGAAATTGCTGGTGC 60.120 47.826 0.00 0.00 40.20 5.01
2035 2390 3.691609 GTCCCTGTAGAAGAAATTGCTGG 59.308 47.826 0.00 0.00 0.00 4.85
2114 2487 2.951475 TTTGCGGTTTCTGCTCCGGT 62.951 55.000 0.00 0.00 45.85 5.28
2261 2634 1.093496 CGTAAAACCCTGCCGGATCC 61.093 60.000 5.05 0.00 34.64 3.36
2308 2681 1.743996 GAAGCTAGGCCCTCTGTTTG 58.256 55.000 0.00 0.00 0.00 2.93
2321 2701 1.660560 GGAGGGTGCGTACGAAGCTA 61.661 60.000 23.80 0.00 35.28 3.32
2346 2726 3.541713 GGGAGCCTACGGAGCCAG 61.542 72.222 0.00 0.00 0.00 4.85
2598 2992 2.022934 GCAGCCGAGTACTACTACCTT 58.977 52.381 0.00 0.00 0.00 3.50
2600 2994 1.677942 AGCAGCCGAGTACTACTACC 58.322 55.000 0.00 0.00 0.00 3.18
2602 2996 2.486191 GGGTAGCAGCCGAGTACTACTA 60.486 54.545 0.00 0.00 36.19 1.82
2603 2997 1.677942 GGTAGCAGCCGAGTACTACT 58.322 55.000 0.00 0.00 36.19 2.57
2631 3031 4.330074 CGATTCAACCAATCCACTAGACAC 59.670 45.833 0.00 0.00 38.17 3.67
2632 3032 4.503910 CGATTCAACCAATCCACTAGACA 58.496 43.478 0.00 0.00 38.17 3.41
2633 3033 3.871594 CCGATTCAACCAATCCACTAGAC 59.128 47.826 0.00 0.00 38.17 2.59
2634 3034 3.118408 CCCGATTCAACCAATCCACTAGA 60.118 47.826 0.00 0.00 38.17 2.43
2694 3095 2.190578 CTGCTTCCCCGGACCATC 59.809 66.667 0.73 0.00 0.00 3.51
2695 3096 4.115199 GCTGCTTCCCCGGACCAT 62.115 66.667 0.73 0.00 0.00 3.55
2713 3124 2.740055 CTGCCGTCAGTGACTGCC 60.740 66.667 29.53 16.24 41.00 4.85
2760 3175 5.733572 CGTTCTCTTGTATACTGTTCGTCTC 59.266 44.000 4.17 0.00 0.00 3.36
2780 3195 2.159517 CCAGGCAAAACAGCTATCGTTC 60.160 50.000 0.00 0.00 34.17 3.95
2827 3247 2.561569 AGTTCAACCACAAGTTCCTCG 58.438 47.619 0.00 0.00 36.18 4.63
2858 3278 2.162681 CAAGGACAAGATGGACCCAAC 58.837 52.381 0.00 0.00 0.00 3.77
2904 3325 6.380560 TCCAATTGCACATGATTAGGATTTCA 59.619 34.615 0.00 0.00 0.00 2.69
2917 3338 3.940209 AACGTCATTCCAATTGCACAT 57.060 38.095 0.00 0.00 0.00 3.21
2964 3387 3.699538 CAGTTTTGGGAGCCCCTTATTAC 59.300 47.826 11.10 3.70 45.70 1.89
2980 3403 2.171448 CAGGGGATCGAGGATCAGTTTT 59.829 50.000 7.80 0.00 40.50 2.43
2984 3407 1.617850 CTTCAGGGGATCGAGGATCAG 59.382 57.143 7.80 0.00 40.50 2.90
2985 3408 1.217942 TCTTCAGGGGATCGAGGATCA 59.782 52.381 7.80 0.00 40.50 2.92
2986 3409 2.002505 TCTTCAGGGGATCGAGGATC 57.997 55.000 0.00 0.00 38.25 3.36
2987 3410 2.534990 GATCTTCAGGGGATCGAGGAT 58.465 52.381 0.00 0.00 31.30 3.24
2988 3411 1.481428 GGATCTTCAGGGGATCGAGGA 60.481 57.143 0.00 0.00 40.11 3.71
2989 3412 0.972883 GGATCTTCAGGGGATCGAGG 59.027 60.000 0.00 0.00 40.11 4.63
2990 3413 2.008242 AGGATCTTCAGGGGATCGAG 57.992 55.000 0.00 0.00 40.11 4.04
2991 3414 2.478872 AAGGATCTTCAGGGGATCGA 57.521 50.000 0.00 0.00 40.11 3.59
2992 3415 3.007398 CCTAAAGGATCTTCAGGGGATCG 59.993 52.174 0.00 0.00 40.11 3.69
2993 3416 3.244735 GCCTAAAGGATCTTCAGGGGATC 60.245 52.174 0.00 0.00 38.92 3.36
2994 3417 2.713708 GCCTAAAGGATCTTCAGGGGAT 59.286 50.000 0.00 0.00 37.39 3.85
2995 3418 2.127708 GCCTAAAGGATCTTCAGGGGA 58.872 52.381 0.00 0.00 37.39 4.81
2996 3419 1.143889 GGCCTAAAGGATCTTCAGGGG 59.856 57.143 0.00 0.00 37.39 4.79
2997 3420 2.131023 AGGCCTAAAGGATCTTCAGGG 58.869 52.381 1.29 0.48 37.39 4.45
2998 3421 3.054065 ACAAGGCCTAAAGGATCTTCAGG 60.054 47.826 5.16 0.00 37.39 3.86
2999 3422 4.227864 ACAAGGCCTAAAGGATCTTCAG 57.772 45.455 5.16 0.00 37.39 3.02
3000 3423 4.589908 GAACAAGGCCTAAAGGATCTTCA 58.410 43.478 5.16 0.00 37.39 3.02
3001 3424 3.623510 CGAACAAGGCCTAAAGGATCTTC 59.376 47.826 5.16 0.00 37.39 2.87
3002 3425 3.610911 CGAACAAGGCCTAAAGGATCTT 58.389 45.455 5.16 0.00 37.39 2.40
3003 3426 2.092914 CCGAACAAGGCCTAAAGGATCT 60.093 50.000 5.16 0.00 37.39 2.75
3004 3427 2.289565 CCGAACAAGGCCTAAAGGATC 58.710 52.381 5.16 0.00 37.39 3.36
3005 3428 1.633945 ACCGAACAAGGCCTAAAGGAT 59.366 47.619 5.16 0.00 36.78 3.24
3006 3429 1.061546 ACCGAACAAGGCCTAAAGGA 58.938 50.000 5.16 0.00 36.78 3.36
3007 3430 1.539827 CAACCGAACAAGGCCTAAAGG 59.460 52.381 5.16 8.46 38.53 3.11
3008 3431 2.484264 CTCAACCGAACAAGGCCTAAAG 59.516 50.000 5.16 1.10 33.69 1.85
3009 3432 2.500229 CTCAACCGAACAAGGCCTAAA 58.500 47.619 5.16 0.00 33.69 1.85
3010 3433 1.271163 CCTCAACCGAACAAGGCCTAA 60.271 52.381 5.16 0.00 33.69 2.69
3011 3434 0.323629 CCTCAACCGAACAAGGCCTA 59.676 55.000 5.16 0.00 33.69 3.93
3012 3435 1.073199 CCTCAACCGAACAAGGCCT 59.927 57.895 0.00 0.00 33.69 5.19
3013 3436 1.228154 ACCTCAACCGAACAAGGCC 60.228 57.895 0.00 0.00 31.79 5.19
3014 3437 1.515521 CCACCTCAACCGAACAAGGC 61.516 60.000 0.00 0.00 31.79 4.35
3015 3438 0.179029 ACCACCTCAACCGAACAAGG 60.179 55.000 0.00 0.00 34.94 3.61
3016 3439 1.675552 AACCACCTCAACCGAACAAG 58.324 50.000 0.00 0.00 0.00 3.16
3017 3440 2.131776 AAACCACCTCAACCGAACAA 57.868 45.000 0.00 0.00 0.00 2.83
3018 3441 2.131776 AAAACCACCTCAACCGAACA 57.868 45.000 0.00 0.00 0.00 3.18
3019 3442 2.424246 TCAAAAACCACCTCAACCGAAC 59.576 45.455 0.00 0.00 0.00 3.95
3020 3443 2.724454 TCAAAAACCACCTCAACCGAA 58.276 42.857 0.00 0.00 0.00 4.30
3021 3444 2.421751 TCAAAAACCACCTCAACCGA 57.578 45.000 0.00 0.00 0.00 4.69
3022 3445 2.223711 CCTTCAAAAACCACCTCAACCG 60.224 50.000 0.00 0.00 0.00 4.44
3023 3446 2.102420 CCCTTCAAAAACCACCTCAACC 59.898 50.000 0.00 0.00 0.00 3.77
3024 3447 2.102420 CCCCTTCAAAAACCACCTCAAC 59.898 50.000 0.00 0.00 0.00 3.18
3025 3448 2.023888 TCCCCTTCAAAAACCACCTCAA 60.024 45.455 0.00 0.00 0.00 3.02
3026 3449 1.571457 TCCCCTTCAAAAACCACCTCA 59.429 47.619 0.00 0.00 0.00 3.86
3027 3450 2.375014 TCCCCTTCAAAAACCACCTC 57.625 50.000 0.00 0.00 0.00 3.85
3028 3451 2.858787 TTCCCCTTCAAAAACCACCT 57.141 45.000 0.00 0.00 0.00 4.00
3029 3452 2.038426 CCATTCCCCTTCAAAAACCACC 59.962 50.000 0.00 0.00 0.00 4.61
3030 3453 2.549992 GCCATTCCCCTTCAAAAACCAC 60.550 50.000 0.00 0.00 0.00 4.16
3031 3454 1.696884 GCCATTCCCCTTCAAAAACCA 59.303 47.619 0.00 0.00 0.00 3.67
3032 3455 1.696884 TGCCATTCCCCTTCAAAAACC 59.303 47.619 0.00 0.00 0.00 3.27
3033 3456 2.289631 CCTGCCATTCCCCTTCAAAAAC 60.290 50.000 0.00 0.00 0.00 2.43
3034 3457 1.977129 CCTGCCATTCCCCTTCAAAAA 59.023 47.619 0.00 0.00 0.00 1.94
3035 3458 1.643310 CCTGCCATTCCCCTTCAAAA 58.357 50.000 0.00 0.00 0.00 2.44
3036 3459 0.252193 CCCTGCCATTCCCCTTCAAA 60.252 55.000 0.00 0.00 0.00 2.69
3037 3460 1.387737 CCCTGCCATTCCCCTTCAA 59.612 57.895 0.00 0.00 0.00 2.69
3038 3461 1.442886 AACCCTGCCATTCCCCTTCA 61.443 55.000 0.00 0.00 0.00 3.02
3039 3462 0.252239 AAACCCTGCCATTCCCCTTC 60.252 55.000 0.00 0.00 0.00 3.46
3040 3463 0.545071 CAAACCCTGCCATTCCCCTT 60.545 55.000 0.00 0.00 0.00 3.95
3041 3464 1.079073 CAAACCCTGCCATTCCCCT 59.921 57.895 0.00 0.00 0.00 4.79
3042 3465 0.972471 CTCAAACCCTGCCATTCCCC 60.972 60.000 0.00 0.00 0.00 4.81
3043 3466 0.039618 TCTCAAACCCTGCCATTCCC 59.960 55.000 0.00 0.00 0.00 3.97
3044 3467 1.467920 CTCTCAAACCCTGCCATTCC 58.532 55.000 0.00 0.00 0.00 3.01
3045 3468 1.467920 CCTCTCAAACCCTGCCATTC 58.532 55.000 0.00 0.00 0.00 2.67
3046 3469 0.040204 CCCTCTCAAACCCTGCCATT 59.960 55.000 0.00 0.00 0.00 3.16
3047 3470 0.846427 TCCCTCTCAAACCCTGCCAT 60.846 55.000 0.00 0.00 0.00 4.40
3048 3471 0.846427 ATCCCTCTCAAACCCTGCCA 60.846 55.000 0.00 0.00 0.00 4.92
3049 3472 0.332972 AATCCCTCTCAAACCCTGCC 59.667 55.000 0.00 0.00 0.00 4.85
3050 3473 2.505819 TCTAATCCCTCTCAAACCCTGC 59.494 50.000 0.00 0.00 0.00 4.85
3051 3474 4.202409 GGATCTAATCCCTCTCAAACCCTG 60.202 50.000 0.00 0.00 43.88 4.45
3052 3475 3.977326 GGATCTAATCCCTCTCAAACCCT 59.023 47.826 0.00 0.00 43.88 4.34
3053 3476 4.359434 GGATCTAATCCCTCTCAAACCC 57.641 50.000 0.00 0.00 43.88 4.11
3064 3487 4.706842 TGCCTTGTAAGGGATCTAATCC 57.293 45.455 12.32 0.00 46.56 3.01
3065 3488 7.255625 GGATTTTGCCTTGTAAGGGATCTAATC 60.256 40.741 12.32 15.43 46.44 1.75
3066 3489 6.551227 GGATTTTGCCTTGTAAGGGATCTAAT 59.449 38.462 12.32 9.25 46.44 1.73
3067 3490 5.891551 GGATTTTGCCTTGTAAGGGATCTAA 59.108 40.000 12.32 5.38 46.44 2.10
3068 3491 5.193728 AGGATTTTGCCTTGTAAGGGATCTA 59.806 40.000 12.32 0.00 46.44 1.98
3069 3492 4.017130 AGGATTTTGCCTTGTAAGGGATCT 60.017 41.667 12.32 0.00 46.44 2.75
3070 3493 4.281657 AGGATTTTGCCTTGTAAGGGATC 58.718 43.478 12.32 4.58 46.44 3.36
3071 3494 4.017130 AGAGGATTTTGCCTTGTAAGGGAT 60.017 41.667 12.32 0.00 46.44 3.85
3072 3495 3.333680 AGAGGATTTTGCCTTGTAAGGGA 59.666 43.478 12.32 6.78 46.56 4.20
3073 3496 3.696548 GAGAGGATTTTGCCTTGTAAGGG 59.303 47.826 12.32 0.00 46.56 3.95
3075 3498 4.335416 TGGAGAGGATTTTGCCTTGTAAG 58.665 43.478 0.00 0.00 38.73 2.34
3076 3499 4.380843 TGGAGAGGATTTTGCCTTGTAA 57.619 40.909 0.00 0.00 38.73 2.41
3077 3500 4.380843 TTGGAGAGGATTTTGCCTTGTA 57.619 40.909 0.00 0.00 38.73 2.41
3078 3501 2.978156 TGGAGAGGATTTTGCCTTGT 57.022 45.000 0.00 0.00 38.73 3.16
3079 3502 3.131755 GGATTGGAGAGGATTTTGCCTTG 59.868 47.826 0.00 0.00 38.73 3.61
3080 3503 3.245730 TGGATTGGAGAGGATTTTGCCTT 60.246 43.478 0.00 0.00 38.73 4.35
3081 3504 2.312741 TGGATTGGAGAGGATTTTGCCT 59.687 45.455 0.00 0.00 42.17 4.75
3082 3505 2.428530 GTGGATTGGAGAGGATTTTGCC 59.571 50.000 0.00 0.00 0.00 4.52
3083 3506 3.359950 AGTGGATTGGAGAGGATTTTGC 58.640 45.455 0.00 0.00 0.00 3.68
3084 3507 3.950395 GGAGTGGATTGGAGAGGATTTTG 59.050 47.826 0.00 0.00 0.00 2.44
3085 3508 3.593328 TGGAGTGGATTGGAGAGGATTTT 59.407 43.478 0.00 0.00 0.00 1.82
3086 3509 3.192944 TGGAGTGGATTGGAGAGGATTT 58.807 45.455 0.00 0.00 0.00 2.17
3087 3510 2.850833 TGGAGTGGATTGGAGAGGATT 58.149 47.619 0.00 0.00 0.00 3.01
3088 3511 2.575921 TGGAGTGGATTGGAGAGGAT 57.424 50.000 0.00 0.00 0.00 3.24
3089 3512 2.342406 TTGGAGTGGATTGGAGAGGA 57.658 50.000 0.00 0.00 0.00 3.71
3090 3513 2.158696 GGATTGGAGTGGATTGGAGAGG 60.159 54.545 0.00 0.00 0.00 3.69
3091 3514 2.158696 GGGATTGGAGTGGATTGGAGAG 60.159 54.545 0.00 0.00 0.00 3.20
3092 3515 1.846439 GGGATTGGAGTGGATTGGAGA 59.154 52.381 0.00 0.00 0.00 3.71
3093 3516 1.133668 GGGGATTGGAGTGGATTGGAG 60.134 57.143 0.00 0.00 0.00 3.86
3094 3517 0.926293 GGGGATTGGAGTGGATTGGA 59.074 55.000 0.00 0.00 0.00 3.53
3095 3518 0.929244 AGGGGATTGGAGTGGATTGG 59.071 55.000 0.00 0.00 0.00 3.16
3096 3519 2.381911 CAAGGGGATTGGAGTGGATTG 58.618 52.381 0.00 0.00 35.08 2.67
3097 3520 2.834638 CAAGGGGATTGGAGTGGATT 57.165 50.000 0.00 0.00 35.08 3.01
3110 3533 1.907240 TTAATCCTCCTCCCAAGGGG 58.093 55.000 5.08 0.00 43.63 4.79
3111 3534 2.421529 CGTTTAATCCTCCTCCCAAGGG 60.422 54.545 0.00 0.00 43.56 3.95
3112 3535 2.504175 TCGTTTAATCCTCCTCCCAAGG 59.496 50.000 0.00 0.00 44.89 3.61
3113 3536 3.906720 TCGTTTAATCCTCCTCCCAAG 57.093 47.619 0.00 0.00 0.00 3.61
3114 3537 3.328343 TGTTCGTTTAATCCTCCTCCCAA 59.672 43.478 0.00 0.00 0.00 4.12
3115 3538 2.907696 TGTTCGTTTAATCCTCCTCCCA 59.092 45.455 0.00 0.00 0.00 4.37
3116 3539 3.622166 TGTTCGTTTAATCCTCCTCCC 57.378 47.619 0.00 0.00 0.00 4.30
3117 3540 3.939592 CCTTGTTCGTTTAATCCTCCTCC 59.060 47.826 0.00 0.00 0.00 4.30
3118 3541 3.374367 GCCTTGTTCGTTTAATCCTCCTC 59.626 47.826 0.00 0.00 0.00 3.71
3119 3542 3.344515 GCCTTGTTCGTTTAATCCTCCT 58.655 45.455 0.00 0.00 0.00 3.69
3120 3543 2.422479 GGCCTTGTTCGTTTAATCCTCC 59.578 50.000 0.00 0.00 0.00 4.30
3121 3544 3.344515 AGGCCTTGTTCGTTTAATCCTC 58.655 45.455 0.00 0.00 0.00 3.71
3122 3545 3.434940 AGGCCTTGTTCGTTTAATCCT 57.565 42.857 0.00 0.00 0.00 3.24
3123 3546 4.095932 CCTAAGGCCTTGTTCGTTTAATCC 59.904 45.833 28.77 0.00 0.00 3.01
3124 3547 4.095932 CCCTAAGGCCTTGTTCGTTTAATC 59.904 45.833 28.77 0.00 0.00 1.75
3125 3548 4.014406 CCCTAAGGCCTTGTTCGTTTAAT 58.986 43.478 28.77 0.00 0.00 1.40
3126 3549 3.414269 CCCTAAGGCCTTGTTCGTTTAA 58.586 45.455 28.77 3.22 0.00 1.52
3127 3550 2.290450 CCCCTAAGGCCTTGTTCGTTTA 60.290 50.000 28.77 4.02 0.00 2.01
3128 3551 1.546998 CCCCTAAGGCCTTGTTCGTTT 60.547 52.381 28.77 0.57 0.00 3.60
3129 3552 0.037734 CCCCTAAGGCCTTGTTCGTT 59.962 55.000 28.77 1.45 0.00 3.85
3130 3553 1.683441 CCCCTAAGGCCTTGTTCGT 59.317 57.895 28.77 2.32 0.00 3.85
3131 3554 1.077716 CCCCCTAAGGCCTTGTTCG 60.078 63.158 28.77 12.33 0.00 3.95
3140 3563 2.748465 CGGTTAGAAATGCCCCCTAAGG 60.748 54.545 0.00 0.00 0.00 2.69
3141 3564 2.171870 TCGGTTAGAAATGCCCCCTAAG 59.828 50.000 0.00 0.00 0.00 2.18
3142 3565 2.198336 TCGGTTAGAAATGCCCCCTAA 58.802 47.619 0.00 0.00 0.00 2.69
3143 3566 1.882308 TCGGTTAGAAATGCCCCCTA 58.118 50.000 0.00 0.00 0.00 3.53
3144 3567 1.143073 GATCGGTTAGAAATGCCCCCT 59.857 52.381 0.00 0.00 0.00 4.79
3145 3568 1.605753 GATCGGTTAGAAATGCCCCC 58.394 55.000 0.00 0.00 0.00 5.40
3146 3569 1.605753 GGATCGGTTAGAAATGCCCC 58.394 55.000 0.00 0.00 0.00 5.80
3147 3570 1.143073 AGGGATCGGTTAGAAATGCCC 59.857 52.381 0.00 0.00 31.74 5.36
3148 3571 2.158813 TCAGGGATCGGTTAGAAATGCC 60.159 50.000 0.00 0.00 0.00 4.40
3149 3572 3.194005 TCAGGGATCGGTTAGAAATGC 57.806 47.619 0.00 0.00 0.00 3.56
3150 3573 4.319177 GGATCAGGGATCGGTTAGAAATG 58.681 47.826 0.00 0.00 39.72 2.32
3151 3574 3.006967 CGGATCAGGGATCGGTTAGAAAT 59.993 47.826 0.00 0.00 39.72 2.17
3152 3575 2.364324 CGGATCAGGGATCGGTTAGAAA 59.636 50.000 0.00 0.00 39.72 2.52
3153 3576 1.961394 CGGATCAGGGATCGGTTAGAA 59.039 52.381 0.00 0.00 39.72 2.10
3154 3577 1.617322 CGGATCAGGGATCGGTTAGA 58.383 55.000 0.00 0.00 39.72 2.10
3155 3578 0.603569 CCGGATCAGGGATCGGTTAG 59.396 60.000 3.59 0.00 39.72 2.34
3156 3579 1.469335 GCCGGATCAGGGATCGGTTA 61.469 60.000 14.13 0.00 39.72 2.85
3157 3580 2.808206 GCCGGATCAGGGATCGGTT 61.808 63.158 14.13 0.00 39.72 4.44
3158 3581 3.234730 GCCGGATCAGGGATCGGT 61.235 66.667 14.13 0.00 39.72 4.69
3159 3582 4.363990 CGCCGGATCAGGGATCGG 62.364 72.222 14.13 7.70 39.72 4.18
3160 3583 1.802337 TAACGCCGGATCAGGGATCG 61.802 60.000 14.13 10.94 39.72 3.69
3161 3584 0.038159 CTAACGCCGGATCAGGGATC 60.038 60.000 14.13 0.00 38.25 3.36
3162 3585 0.469331 TCTAACGCCGGATCAGGGAT 60.469 55.000 14.13 1.75 0.00 3.85
3163 3586 1.076559 TCTAACGCCGGATCAGGGA 60.077 57.895 14.13 0.00 0.00 4.20
3164 3587 1.107538 TCTCTAACGCCGGATCAGGG 61.108 60.000 14.13 5.85 0.00 4.45
3165 3588 0.744874 TTCTCTAACGCCGGATCAGG 59.255 55.000 5.05 7.64 0.00 3.86
3166 3589 1.405821 ACTTCTCTAACGCCGGATCAG 59.594 52.381 5.05 0.00 0.00 2.90
3167 3590 1.471119 ACTTCTCTAACGCCGGATCA 58.529 50.000 5.05 0.00 0.00 2.92
3168 3591 3.705043 TTACTTCTCTAACGCCGGATC 57.295 47.619 5.05 0.00 0.00 3.36
3169 3592 4.667519 AATTACTTCTCTAACGCCGGAT 57.332 40.909 5.05 0.00 0.00 4.18
3170 3593 4.427312 GAAATTACTTCTCTAACGCCGGA 58.573 43.478 5.05 0.00 0.00 5.14
3171 3594 3.242248 CGAAATTACTTCTCTAACGCCGG 59.758 47.826 0.00 0.00 31.20 6.13
3172 3595 3.242248 CCGAAATTACTTCTCTAACGCCG 59.758 47.826 0.00 0.00 31.20 6.46
3173 3596 4.179298 ACCGAAATTACTTCTCTAACGCC 58.821 43.478 0.00 0.00 31.20 5.68
3174 3597 5.774878 AACCGAAATTACTTCTCTAACGC 57.225 39.130 0.00 0.00 31.20 4.84
3175 3598 8.919661 AGTAAAACCGAAATTACTTCTCTAACG 58.080 33.333 0.00 0.00 38.81 3.18
3177 3600 9.985730 TGAGTAAAACCGAAATTACTTCTCTAA 57.014 29.630 7.73 0.00 41.23 2.10
3179 3602 9.152595 GATGAGTAAAACCGAAATTACTTCTCT 57.847 33.333 7.73 0.00 41.23 3.10
3180 3603 9.152595 AGATGAGTAAAACCGAAATTACTTCTC 57.847 33.333 7.73 7.77 41.23 2.87
3185 3608 9.845305 CGATTAGATGAGTAAAACCGAAATTAC 57.155 33.333 0.00 0.00 33.25 1.89
3186 3609 9.037737 CCGATTAGATGAGTAAAACCGAAATTA 57.962 33.333 0.00 0.00 0.00 1.40
3187 3610 7.466860 GCCGATTAGATGAGTAAAACCGAAATT 60.467 37.037 0.00 0.00 0.00 1.82
3188 3611 6.018180 GCCGATTAGATGAGTAAAACCGAAAT 60.018 38.462 0.00 0.00 0.00 2.17
3189 3612 5.292589 GCCGATTAGATGAGTAAAACCGAAA 59.707 40.000 0.00 0.00 0.00 3.46
3190 3613 4.807304 GCCGATTAGATGAGTAAAACCGAA 59.193 41.667 0.00 0.00 0.00 4.30
3191 3614 4.142116 TGCCGATTAGATGAGTAAAACCGA 60.142 41.667 0.00 0.00 0.00 4.69
3192 3615 4.025979 GTGCCGATTAGATGAGTAAAACCG 60.026 45.833 0.00 0.00 0.00 4.44
3193 3616 4.272748 GGTGCCGATTAGATGAGTAAAACC 59.727 45.833 0.00 0.00 0.00 3.27
3194 3617 4.272748 GGGTGCCGATTAGATGAGTAAAAC 59.727 45.833 0.00 0.00 0.00 2.43
3195 3618 4.448210 GGGTGCCGATTAGATGAGTAAAA 58.552 43.478 0.00 0.00 0.00 1.52
3196 3619 4.067972 GGGTGCCGATTAGATGAGTAAA 57.932 45.455 0.00 0.00 0.00 2.01
3197 3620 3.746045 GGGTGCCGATTAGATGAGTAA 57.254 47.619 0.00 0.00 0.00 2.24
3219 3642 1.194121 ATTTGGTTCAGGGGCTTGGC 61.194 55.000 0.00 0.00 0.00 4.52
3220 3643 1.002315 CAATTTGGTTCAGGGGCTTGG 59.998 52.381 0.00 0.00 0.00 3.61
3221 3644 1.969923 TCAATTTGGTTCAGGGGCTTG 59.030 47.619 0.00 0.00 0.00 4.01
3222 3645 2.158325 TCTCAATTTGGTTCAGGGGCTT 60.158 45.455 0.00 0.00 0.00 4.35
3223 3646 1.428912 TCTCAATTTGGTTCAGGGGCT 59.571 47.619 0.00 0.00 0.00 5.19
3224 3647 1.923356 TCTCAATTTGGTTCAGGGGC 58.077 50.000 0.00 0.00 0.00 5.80
3225 3648 2.827921 CCTTCTCAATTTGGTTCAGGGG 59.172 50.000 0.00 0.00 0.00 4.79
3226 3649 3.766545 TCCTTCTCAATTTGGTTCAGGG 58.233 45.455 0.00 0.00 0.00 4.45
3227 3650 7.651027 ATTATCCTTCTCAATTTGGTTCAGG 57.349 36.000 0.00 0.00 0.00 3.86
3247 3670 8.759782 CGGGATAAGTAGTGGAGGATAAATTAT 58.240 37.037 0.00 0.00 0.00 1.28
3248 3671 7.310237 GCGGGATAAGTAGTGGAGGATAAATTA 60.310 40.741 0.00 0.00 0.00 1.40
3249 3672 6.520231 GCGGGATAAGTAGTGGAGGATAAATT 60.520 42.308 0.00 0.00 0.00 1.82
3250 3673 5.046520 GCGGGATAAGTAGTGGAGGATAAAT 60.047 44.000 0.00 0.00 0.00 1.40
3251 3674 4.282703 GCGGGATAAGTAGTGGAGGATAAA 59.717 45.833 0.00 0.00 0.00 1.40
3252 3675 3.830755 GCGGGATAAGTAGTGGAGGATAA 59.169 47.826 0.00 0.00 0.00 1.75
3253 3676 3.428532 GCGGGATAAGTAGTGGAGGATA 58.571 50.000 0.00 0.00 0.00 2.59
3254 3677 2.249139 GCGGGATAAGTAGTGGAGGAT 58.751 52.381 0.00 0.00 0.00 3.24
3255 3678 1.700955 GCGGGATAAGTAGTGGAGGA 58.299 55.000 0.00 0.00 0.00 3.71
3256 3679 0.680061 GGCGGGATAAGTAGTGGAGG 59.320 60.000 0.00 0.00 0.00 4.30
3257 3680 0.680061 GGGCGGGATAAGTAGTGGAG 59.320 60.000 0.00 0.00 0.00 3.86
3258 3681 0.761702 GGGGCGGGATAAGTAGTGGA 60.762 60.000 0.00 0.00 0.00 4.02
3259 3682 0.763223 AGGGGCGGGATAAGTAGTGG 60.763 60.000 0.00 0.00 0.00 4.00
3260 3683 2.005370 TAGGGGCGGGATAAGTAGTG 57.995 55.000 0.00 0.00 0.00 2.74
3261 3684 4.621797 ATATAGGGGCGGGATAAGTAGT 57.378 45.455 0.00 0.00 0.00 2.73
3262 3685 5.671493 CAAATATAGGGGCGGGATAAGTAG 58.329 45.833 0.00 0.00 0.00 2.57
3263 3686 4.080751 GCAAATATAGGGGCGGGATAAGTA 60.081 45.833 0.00 0.00 0.00 2.24
3264 3687 3.308188 GCAAATATAGGGGCGGGATAAGT 60.308 47.826 0.00 0.00 0.00 2.24
3265 3688 3.054361 AGCAAATATAGGGGCGGGATAAG 60.054 47.826 0.00 0.00 0.00 1.73
3266 3689 2.916934 AGCAAATATAGGGGCGGGATAA 59.083 45.455 0.00 0.00 0.00 1.75
3267 3690 2.504175 GAGCAAATATAGGGGCGGGATA 59.496 50.000 0.00 0.00 0.00 2.59
3268 3691 1.282157 GAGCAAATATAGGGGCGGGAT 59.718 52.381 0.00 0.00 0.00 3.85
3269 3692 0.690762 GAGCAAATATAGGGGCGGGA 59.309 55.000 0.00 0.00 0.00 5.14
3270 3693 0.673644 CGAGCAAATATAGGGGCGGG 60.674 60.000 0.00 0.00 0.00 6.13
3271 3694 0.673644 CCGAGCAAATATAGGGGCGG 60.674 60.000 0.00 0.00 0.00 6.13
3272 3695 1.298859 GCCGAGCAAATATAGGGGCG 61.299 60.000 0.00 0.00 0.00 6.13
3273 3696 0.960861 GGCCGAGCAAATATAGGGGC 60.961 60.000 0.00 0.00 38.34 5.80
3274 3697 0.673644 CGGCCGAGCAAATATAGGGG 60.674 60.000 24.07 0.00 0.00 4.79
3275 3698 1.298859 GCGGCCGAGCAAATATAGGG 61.299 60.000 33.48 0.00 37.05 3.53
3276 3699 0.320771 AGCGGCCGAGCAAATATAGG 60.321 55.000 33.48 0.00 40.15 2.57
3277 3700 1.993370 GTAGCGGCCGAGCAAATATAG 59.007 52.381 33.48 0.00 40.15 1.31
3278 3701 1.616865 AGTAGCGGCCGAGCAAATATA 59.383 47.619 33.48 4.51 40.15 0.86
3279 3702 0.393077 AGTAGCGGCCGAGCAAATAT 59.607 50.000 33.48 5.55 40.15 1.28
3280 3703 0.529773 CAGTAGCGGCCGAGCAAATA 60.530 55.000 33.48 7.94 40.15 1.40
3281 3704 1.815421 CAGTAGCGGCCGAGCAAAT 60.815 57.895 33.48 6.45 40.15 2.32
3282 3705 2.434185 CAGTAGCGGCCGAGCAAA 60.434 61.111 33.48 5.12 40.15 3.68
3283 3706 2.725203 AAACAGTAGCGGCCGAGCAA 62.725 55.000 33.48 7.27 40.15 3.91
3284 3707 3.234630 AAACAGTAGCGGCCGAGCA 62.235 57.895 33.48 9.91 40.15 4.26
3285 3708 2.434359 AAACAGTAGCGGCCGAGC 60.434 61.111 33.48 17.75 37.41 5.03
3286 3709 2.100631 CCAAACAGTAGCGGCCGAG 61.101 63.158 33.48 14.77 0.00 4.63
3287 3710 2.047655 CCAAACAGTAGCGGCCGA 60.048 61.111 33.48 5.65 0.00 5.54
3288 3711 2.047655 TCCAAACAGTAGCGGCCG 60.048 61.111 24.05 24.05 0.00 6.13
3289 3712 1.745489 CCTCCAAACAGTAGCGGCC 60.745 63.158 0.00 0.00 0.00 6.13
3290 3713 0.321298 TTCCTCCAAACAGTAGCGGC 60.321 55.000 0.00 0.00 0.00 6.53
3291 3714 2.178912 TTTCCTCCAAACAGTAGCGG 57.821 50.000 0.00 0.00 0.00 5.52
3309 3732 1.711684 ATGGAGGGGAGGGGATTTTT 58.288 50.000 0.00 0.00 0.00 1.94
3310 3733 1.291939 CAATGGAGGGGAGGGGATTTT 59.708 52.381 0.00 0.00 0.00 1.82
3311 3734 0.936691 CAATGGAGGGGAGGGGATTT 59.063 55.000 0.00 0.00 0.00 2.17
3312 3735 1.659035 GCAATGGAGGGGAGGGGATT 61.659 60.000 0.00 0.00 0.00 3.01
3313 3736 2.087461 GCAATGGAGGGGAGGGGAT 61.087 63.158 0.00 0.00 0.00 3.85
3314 3737 2.696125 GCAATGGAGGGGAGGGGA 60.696 66.667 0.00 0.00 0.00 4.81
3315 3738 3.825623 GGCAATGGAGGGGAGGGG 61.826 72.222 0.00 0.00 0.00 4.79
3316 3739 2.697644 AGGCAATGGAGGGGAGGG 60.698 66.667 0.00 0.00 0.00 4.30
3317 3740 2.002977 TGAGGCAATGGAGGGGAGG 61.003 63.158 0.00 0.00 0.00 4.30
3318 3741 1.225704 GTGAGGCAATGGAGGGGAG 59.774 63.158 0.00 0.00 0.00 4.30
3319 3742 2.308722 GGTGAGGCAATGGAGGGGA 61.309 63.158 0.00 0.00 0.00 4.81
3320 3743 2.276740 GGTGAGGCAATGGAGGGG 59.723 66.667 0.00 0.00 0.00 4.79
3321 3744 2.276740 GGGTGAGGCAATGGAGGG 59.723 66.667 0.00 0.00 0.00 4.30
3322 3745 1.379044 GTGGGTGAGGCAATGGAGG 60.379 63.158 0.00 0.00 0.00 4.30
3323 3746 1.379044 GGTGGGTGAGGCAATGGAG 60.379 63.158 0.00 0.00 0.00 3.86
3324 3747 2.763215 GGTGGGTGAGGCAATGGA 59.237 61.111 0.00 0.00 0.00 3.41
3325 3748 2.362889 GGGTGGGTGAGGCAATGG 60.363 66.667 0.00 0.00 0.00 3.16
3326 3749 1.978617 GTGGGTGGGTGAGGCAATG 60.979 63.158 0.00 0.00 0.00 2.82
3327 3750 2.142292 GAGTGGGTGGGTGAGGCAAT 62.142 60.000 0.00 0.00 0.00 3.56
3328 3751 2.776526 AGTGGGTGGGTGAGGCAA 60.777 61.111 0.00 0.00 0.00 4.52
3329 3752 3.249189 GAGTGGGTGGGTGAGGCA 61.249 66.667 0.00 0.00 0.00 4.75
3330 3753 2.930562 AGAGTGGGTGGGTGAGGC 60.931 66.667 0.00 0.00 0.00 4.70
3331 3754 2.650116 CGAGAGTGGGTGGGTGAGG 61.650 68.421 0.00 0.00 0.00 3.86
3332 3755 2.973899 CGAGAGTGGGTGGGTGAG 59.026 66.667 0.00 0.00 0.00 3.51
3333 3756 3.311110 GCGAGAGTGGGTGGGTGA 61.311 66.667 0.00 0.00 0.00 4.02
3334 3757 4.742201 CGCGAGAGTGGGTGGGTG 62.742 72.222 0.00 0.00 38.12 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.