Multiple sequence alignment - TraesCS5A01G410900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G410900 chr5A 100.000 6131 0 0 1 6131 599784390 599778260 0.000000e+00 11322.0
1 TraesCS5A01G410900 chr5D 97.268 5563 124 11 530 6089 480605219 480599682 0.000000e+00 9406.0
2 TraesCS5A01G410900 chr5D 90.447 492 19 8 48 531 480605784 480605313 1.880000e-174 623.0
3 TraesCS5A01G410900 chr2A 94.215 5186 219 31 746 5898 1871222 1876359 0.000000e+00 7840.0
4 TraesCS5A01G410900 chr2A 81.564 2723 444 29 977 3652 2321193 2323904 0.000000e+00 2194.0
5 TraesCS5A01G410900 chr2A 89.780 1634 132 16 1557 3157 2986556 2988187 0.000000e+00 2060.0
6 TraesCS5A01G410900 chr2A 80.748 2514 424 35 942 3409 2964357 2966856 0.000000e+00 1906.0
7 TraesCS5A01G410900 chr2A 82.171 1520 223 21 3805 5300 2381071 2382566 0.000000e+00 1262.0
8 TraesCS5A01G410900 chr2A 85.389 1054 133 9 3152 4205 2988338 2989370 0.000000e+00 1074.0
9 TraesCS5A01G410900 chr2A 79.191 1014 166 27 3674 4672 2884019 2885002 0.000000e+00 662.0
10 TraesCS5A01G410900 chr2A 95.018 281 12 2 5762 6041 1906001 1906280 2.030000e-119 440.0
11 TraesCS5A01G410900 chr2A 83.166 499 54 14 5600 6095 2990734 2991205 4.390000e-116 429.0
12 TraesCS5A01G410900 chr2A 81.860 430 68 4 894 1313 2985890 2986319 2.720000e-93 353.0
13 TraesCS5A01G410900 chr2A 75.517 629 101 32 5446 6040 2490013 2489404 6.100000e-65 259.0
14 TraesCS5A01G410900 chr2A 75.381 459 72 29 5600 6040 2383136 2383571 3.770000e-42 183.0
15 TraesCS5A01G410900 chr2A 91.743 109 6 3 100 206 2318194 2318301 1.380000e-31 148.0
16 TraesCS5A01G410900 chr2A 100.000 35 0 0 18 52 2318090 2318124 1.430000e-06 65.8
17 TraesCS5A01G410900 chr2D 95.840 4567 165 9 746 5304 1991388 1995937 0.000000e+00 7358.0
18 TraesCS5A01G410900 chr2D 85.689 2250 282 21 1460 3678 22570846 22568606 0.000000e+00 2335.0
19 TraesCS5A01G410900 chr2D 79.583 960 146 27 3674 4623 2732657 2731738 5.180000e-180 641.0
20 TraesCS5A01G410900 chr2D 89.764 508 41 5 5596 6095 1996231 1996735 1.860000e-179 640.0
21 TraesCS5A01G410900 chr2D 80.887 586 76 13 3674 4247 2678349 2677788 4.390000e-116 429.0
22 TraesCS5A01G410900 chr2D 90.637 267 21 2 5337 5600 1995936 1996201 9.780000e-93 351.0
23 TraesCS5A01G410900 chr2D 83.758 314 51 0 3674 3987 2463174 2463487 1.290000e-76 298.0
24 TraesCS5A01G410900 chr2D 84.806 283 21 12 555 826 1989168 1989439 1.310000e-66 265.0
25 TraesCS5A01G410900 chr2D 74.684 632 103 34 5446 6040 2537702 2537091 1.720000e-55 228.0
26 TraesCS5A01G410900 chr2D 88.889 162 5 7 530 681 1991090 1991248 2.920000e-43 187.0
27 TraesCS5A01G410900 chr5B 96.411 3929 120 11 17 3933 588943622 588939703 0.000000e+00 6455.0
28 TraesCS5A01G410900 chr5B 95.965 1710 50 5 3929 5631 588934473 588932776 0.000000e+00 2758.0
29 TraesCS5A01G410900 chr5B 95.712 653 21 4 5484 6131 588932777 588932127 0.000000e+00 1044.0
30 TraesCS5A01G410900 chr2B 95.233 1846 70 5 2369 4214 470551 472378 0.000000e+00 2905.0
31 TraesCS5A01G410900 chr2B 86.358 2265 253 25 935 3157 8564950 8567200 0.000000e+00 2420.0
32 TraesCS5A01G410900 chr2B 81.991 2682 432 23 1013 3652 8338817 8341489 0.000000e+00 2230.0
33 TraesCS5A01G410900 chr2B 92.334 1448 84 4 760 2181 469102 470548 0.000000e+00 2034.0
34 TraesCS5A01G410900 chr2B 81.778 1586 243 24 3674 5242 8388555 8390111 0.000000e+00 1286.0
35 TraesCS5A01G410900 chr2B 84.586 1064 131 15 3150 4205 8567351 8568389 0.000000e+00 1026.0
36 TraesCS5A01G410900 chr2B 81.693 945 156 11 4433 5370 8596130 8597064 0.000000e+00 771.0
37 TraesCS5A01G410900 chr2B 87.052 502 48 11 5600 6095 8569756 8570246 8.980000e-153 551.0
38 TraesCS5A01G410900 chr2B 92.286 350 19 7 5596 5943 473644 473987 1.990000e-134 490.0
39 TraesCS5A01G410900 chr2B 90.336 238 18 2 5366 5600 473379 473614 2.150000e-79 307.0
40 TraesCS5A01G410900 chr2B 86.486 222 16 7 471 681 468864 469082 1.330000e-56 231.0
41 TraesCS5A01G410900 chr2B 78.481 316 41 10 5444 5736 8999182 8999493 1.360000e-41 182.0
42 TraesCS5A01G410900 chr2B 96.970 33 1 0 604 636 9202317 9202285 8.590000e-04 56.5
43 TraesCS5A01G410900 chrUn 81.972 2241 379 11 1455 3678 330378954 330376722 0.000000e+00 1877.0
44 TraesCS5A01G410900 chrUn 81.883 2241 381 11 1455 3678 330402026 330399794 0.000000e+00 1866.0
45 TraesCS5A01G410900 chrUn 82.000 1650 255 18 3674 5300 15916357 15914727 0.000000e+00 1363.0
46 TraesCS5A01G410900 chrUn 81.738 1588 240 25 3674 5242 15553298 15554854 0.000000e+00 1280.0
47 TraesCS5A01G410900 chrUn 80.852 1666 257 35 3677 5305 15478810 15477170 0.000000e+00 1253.0
48 TraesCS5A01G410900 chrUn 82.249 169 17 8 5720 5883 15953046 15952886 3.860000e-27 134.0
49 TraesCS5A01G410900 chr4B 83.221 1478 211 21 3674 5145 634316167 634317613 0.000000e+00 1321.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G410900 chr5A 599778260 599784390 6130 True 11322.000000 11322 100.000000 1 6131 1 chr5A.!!$R1 6130
1 TraesCS5A01G410900 chr5D 480599682 480605784 6102 True 5014.500000 9406 93.857500 48 6089 2 chr5D.!!$R1 6041
2 TraesCS5A01G410900 chr2A 1871222 1876359 5137 False 7840.000000 7840 94.215000 746 5898 1 chr2A.!!$F1 5152
3 TraesCS5A01G410900 chr2A 2964357 2966856 2499 False 1906.000000 1906 80.748000 942 3409 1 chr2A.!!$F4 2467
4 TraesCS5A01G410900 chr2A 2985890 2991205 5315 False 979.000000 2060 85.048750 894 6095 4 chr2A.!!$F7 5201
5 TraesCS5A01G410900 chr2A 2318090 2323904 5814 False 802.600000 2194 91.102333 18 3652 3 chr2A.!!$F5 3634
6 TraesCS5A01G410900 chr2A 2381071 2383571 2500 False 722.500000 1262 78.776000 3805 6040 2 chr2A.!!$F6 2235
7 TraesCS5A01G410900 chr2A 2884019 2885002 983 False 662.000000 662 79.191000 3674 4672 1 chr2A.!!$F3 998
8 TraesCS5A01G410900 chr2A 2489404 2490013 609 True 259.000000 259 75.517000 5446 6040 1 chr2A.!!$R1 594
9 TraesCS5A01G410900 chr2D 22568606 22570846 2240 True 2335.000000 2335 85.689000 1460 3678 1 chr2D.!!$R4 2218
10 TraesCS5A01G410900 chr2D 1989168 1996735 7567 False 1760.200000 7358 89.987200 530 6095 5 chr2D.!!$F2 5565
11 TraesCS5A01G410900 chr2D 2731738 2732657 919 True 641.000000 641 79.583000 3674 4623 1 chr2D.!!$R3 949
12 TraesCS5A01G410900 chr2D 2677788 2678349 561 True 429.000000 429 80.887000 3674 4247 1 chr2D.!!$R2 573
13 TraesCS5A01G410900 chr2D 2537091 2537702 611 True 228.000000 228 74.684000 5446 6040 1 chr2D.!!$R1 594
14 TraesCS5A01G410900 chr5B 588939703 588943622 3919 True 6455.000000 6455 96.411000 17 3933 1 chr5B.!!$R1 3916
15 TraesCS5A01G410900 chr5B 588932127 588934473 2346 True 1901.000000 2758 95.838500 3929 6131 2 chr5B.!!$R2 2202
16 TraesCS5A01G410900 chr2B 8338817 8341489 2672 False 2230.000000 2230 81.991000 1013 3652 1 chr2B.!!$F1 2639
17 TraesCS5A01G410900 chr2B 8564950 8570246 5296 False 1332.333333 2420 85.998667 935 6095 3 chr2B.!!$F6 5160
18 TraesCS5A01G410900 chr2B 8388555 8390111 1556 False 1286.000000 1286 81.778000 3674 5242 1 chr2B.!!$F2 1568
19 TraesCS5A01G410900 chr2B 468864 473987 5123 False 1193.400000 2905 91.335000 471 5943 5 chr2B.!!$F5 5472
20 TraesCS5A01G410900 chr2B 8596130 8597064 934 False 771.000000 771 81.693000 4433 5370 1 chr2B.!!$F3 937
21 TraesCS5A01G410900 chrUn 330376722 330378954 2232 True 1877.000000 1877 81.972000 1455 3678 1 chrUn.!!$R4 2223
22 TraesCS5A01G410900 chrUn 330399794 330402026 2232 True 1866.000000 1866 81.883000 1455 3678 1 chrUn.!!$R5 2223
23 TraesCS5A01G410900 chrUn 15914727 15916357 1630 True 1363.000000 1363 82.000000 3674 5300 1 chrUn.!!$R2 1626
24 TraesCS5A01G410900 chrUn 15553298 15554854 1556 False 1280.000000 1280 81.738000 3674 5242 1 chrUn.!!$F1 1568
25 TraesCS5A01G410900 chrUn 15477170 15478810 1640 True 1253.000000 1253 80.852000 3677 5305 1 chrUn.!!$R1 1628
26 TraesCS5A01G410900 chr4B 634316167 634317613 1446 False 1321.000000 1321 83.221000 3674 5145 1 chr4B.!!$F1 1471

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
463 524 0.112995 TGCTTTGGCCAGGACAAGAT 59.887 50.000 17.36 0.0 37.74 2.40 F
1126 4679 0.107312 CAACATCCAGGCCCTCAGAG 60.107 60.000 0.00 0.0 0.00 3.35 F
1462 5105 1.059098 AGCATCAGACACCAACCAGA 58.941 50.000 0.00 0.0 0.00 3.86 F
1565 5211 1.580942 GTGGCAATGCGCAAGAAGA 59.419 52.632 17.11 0.0 45.17 2.87 F
2301 5950 2.729028 AATGTCCAGGGGATAAACGG 57.271 50.000 0.00 0.0 32.73 4.44 F
3505 7378 3.319122 GGAAACAATGGTTCTTGAGTGCT 59.681 43.478 11.12 0.0 35.82 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 5105 0.745845 GACATGCATCCGCTGACCTT 60.746 55.000 0.00 0.0 39.64 3.50 R
2301 5950 4.574599 ATCTCCAGTGTCAAGCAAAAAC 57.425 40.909 0.00 0.0 0.00 2.43 R
3426 7296 5.480073 CCAATCCAATGTTAACCTCCTCAAA 59.520 40.000 2.48 0.0 0.00 2.69 R
3551 7424 1.152546 GTTGGACAAGTGGGGCCTT 60.153 57.895 0.84 0.0 0.00 4.35 R
3658 7531 0.622665 AGCTCACAAAGATCCCCCAG 59.377 55.000 0.00 0.0 0.00 4.45 R
5333 9280 1.272490 TGTACAGGAAGGAAGACAGCG 59.728 52.381 0.00 0.0 0.00 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
302 356 1.619669 AGGTCATCCCTTCCCACCC 60.620 63.158 0.00 0.00 42.73 4.61
303 357 2.590092 GTCATCCCTTCCCACCCG 59.410 66.667 0.00 0.00 0.00 5.28
425 486 3.188786 GTCATGTCCACGCTCGCC 61.189 66.667 0.00 0.00 0.00 5.54
463 524 0.112995 TGCTTTGGCCAGGACAAGAT 59.887 50.000 17.36 0.00 37.74 2.40
592 1992 1.134551 CCACCTCTAGCTTTGCTCTCC 60.135 57.143 0.00 0.00 40.44 3.71
772 3538 0.250295 TGGCCAGACTTCTCAAACCG 60.250 55.000 0.00 0.00 0.00 4.44
815 4016 4.636435 ACTCGGCCCAACCCAACG 62.636 66.667 0.00 0.00 33.26 4.10
834 4038 1.253593 GCCCCTTTTGCAGCTAGCTT 61.254 55.000 16.46 0.00 45.94 3.74
895 4379 4.299155 CCATCAAGGTATGTACTAGTGCG 58.701 47.826 5.39 0.00 0.00 5.34
953 4443 6.294508 CCTGTTTACCATCGATTTCCTTTTGT 60.295 38.462 0.00 0.00 0.00 2.83
1126 4679 0.107312 CAACATCCAGGCCCTCAGAG 60.107 60.000 0.00 0.00 0.00 3.35
1462 5105 1.059098 AGCATCAGACACCAACCAGA 58.941 50.000 0.00 0.00 0.00 3.86
1565 5211 1.580942 GTGGCAATGCGCAAGAAGA 59.419 52.632 17.11 0.00 45.17 2.87
1771 5418 5.388654 GGAGGGACCATGTCATGAATAATT 58.611 41.667 14.67 0.00 38.79 1.40
2301 5950 2.729028 AATGTCCAGGGGATAAACGG 57.271 50.000 0.00 0.00 32.73 4.44
3082 6755 3.383505 TGTCCACCTACGATTCCTATGTG 59.616 47.826 0.00 0.00 0.00 3.21
3298 7167 7.449086 AGTTGAAGGTATTTCGGGTCAATAAAA 59.551 33.333 0.00 0.00 38.71 1.52
3505 7378 3.319122 GGAAACAATGGTTCTTGAGTGCT 59.681 43.478 11.12 0.00 35.82 4.40
3658 7531 5.138276 AGGTTTTCCCTTCTTTACAGAACC 58.862 41.667 0.00 0.00 42.73 3.62
3718 7594 0.102481 ATTCTCGTCCGTGATTCCCG 59.898 55.000 0.00 0.00 0.00 5.14
3798 7674 4.813161 AGGTTTGCATACTCAAGATCATCG 59.187 41.667 7.25 0.00 0.00 3.84
3990 7866 0.107800 CAGATGGTCTGGCTGGTCTG 60.108 60.000 0.00 0.00 40.71 3.51
3991 7867 1.222936 GATGGTCTGGCTGGTCTGG 59.777 63.158 0.00 0.00 0.00 3.86
3992 7868 2.883267 GATGGTCTGGCTGGTCTGGC 62.883 65.000 0.00 0.00 0.00 4.85
3993 7869 3.325753 GGTCTGGCTGGTCTGGCT 61.326 66.667 3.46 0.00 0.00 4.75
3994 7870 2.046507 GTCTGGCTGGTCTGGCTG 60.047 66.667 3.46 3.20 0.00 4.85
3995 7871 3.324930 TCTGGCTGGTCTGGCTGG 61.325 66.667 7.96 0.80 33.51 4.85
3996 7872 3.644606 CTGGCTGGTCTGGCTGGT 61.645 66.667 3.46 0.00 0.00 4.00
4079 7955 4.508124 CGAGATCTGCCACTTAAATGGTAC 59.492 45.833 0.00 0.00 42.28 3.34
4247 8141 0.676151 GCAGCAACAGAGGAAGAGGG 60.676 60.000 0.00 0.00 0.00 4.30
5333 9280 0.678048 GGCATGAGGGTCTTGTGGAC 60.678 60.000 0.00 0.00 43.79 4.02
5354 9301 2.672478 CGCTGTCTTCCTTCCTGTACAG 60.672 54.545 16.34 16.34 37.87 2.74
5361 9308 6.667848 TGTCTTCCTTCCTGTACAGATTATCA 59.332 38.462 24.68 8.30 0.00 2.15
5431 9729 3.819564 TCCAGTTATACTCGCTGCAAT 57.180 42.857 0.00 0.00 0.00 3.56
5588 10099 4.808364 GCTAATACCTTCTGCAAGTCTCTG 59.192 45.833 0.00 0.00 33.76 3.35
5594 10105 3.745458 CCTTCTGCAAGTCTCTGTTCTTC 59.255 47.826 0.00 0.00 33.76 2.87
5842 10442 3.505680 GTCAATACCAGGTGTTGATGCAA 59.494 43.478 28.78 8.82 43.29 4.08
5955 10561 3.415212 TCCAAAGCTCATGAAGACTTGG 58.585 45.455 14.86 14.86 0.00 3.61
6086 10697 9.987272 TTGTATCCAATCTACATTCTACTGATG 57.013 33.333 0.00 0.00 0.00 3.07
6106 10717 4.193240 TGCCAGGTATCCAGTCTACATA 57.807 45.455 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.210116 CATGGCGACTACCCATTACAC 58.790 52.381 0.00 0.00 41.02 2.90
1 2 1.834896 ACATGGCGACTACCCATTACA 59.165 47.619 0.00 0.00 41.02 2.41
2 3 2.614829 ACATGGCGACTACCCATTAC 57.385 50.000 0.00 0.00 41.02 1.89
5 6 1.412710 CACTACATGGCGACTACCCAT 59.587 52.381 0.00 0.00 43.70 4.00
6 7 0.821517 CACTACATGGCGACTACCCA 59.178 55.000 0.00 0.00 36.66 4.51
7 8 1.108776 TCACTACATGGCGACTACCC 58.891 55.000 0.00 0.00 0.00 3.69
11 12 1.341531 GCCTATCACTACATGGCGACT 59.658 52.381 0.00 0.00 33.96 4.18
12 13 1.605712 GGCCTATCACTACATGGCGAC 60.606 57.143 0.00 0.00 44.07 5.19
13 14 0.679505 GGCCTATCACTACATGGCGA 59.320 55.000 0.00 0.00 44.07 5.54
14 15 0.320771 GGGCCTATCACTACATGGCG 60.321 60.000 0.84 0.00 44.07 5.69
52 53 1.134580 CCACTCAGGTGCCATGACTAG 60.135 57.143 0.00 0.00 41.75 2.57
195 226 1.744368 CAGGCACAGCAGCTCGAAT 60.744 57.895 0.00 0.00 34.17 3.34
313 367 4.602111 GCATAAGCACAAGCACATGGCA 62.602 50.000 8.58 0.00 45.49 4.92
493 554 7.777095 AGACTAGTCAAGATGATAAGTTGGAC 58.223 38.462 24.44 0.00 28.52 4.02
524 649 1.065551 GCTCCGTCCCAACATATTTGC 59.934 52.381 0.00 0.00 0.00 3.68
574 1974 0.820871 CGGAGAGCAAAGCTAGAGGT 59.179 55.000 0.00 0.00 39.88 3.85
772 3538 3.511934 TGAGAGAGCCCTGAAGTTAAGTC 59.488 47.826 0.00 0.00 0.00 3.01
815 4016 1.253593 AAGCTAGCTGCAAAAGGGGC 61.254 55.000 20.16 0.00 45.94 5.80
895 4379 3.347216 TGCAAATTAAGGAGAGGAGTGC 58.653 45.455 0.00 0.00 0.00 4.40
953 4443 2.342650 GGCGCCTGCATCAAGGAAA 61.343 57.895 22.15 0.00 45.35 3.13
1126 4679 2.035442 GCACCTTCTCCAGTTCCGC 61.035 63.158 0.00 0.00 0.00 5.54
1188 4741 1.078918 CAGCATCTTCTCCGTGGCA 60.079 57.895 0.00 0.00 0.00 4.92
1329 4882 1.977009 ATCACAGGCGAGGTCACGA 60.977 57.895 0.00 0.00 35.09 4.35
1426 5054 1.014044 GCTGAGAACGAATCGCCACA 61.014 55.000 1.15 0.00 0.00 4.17
1462 5105 0.745845 GACATGCATCCGCTGACCTT 60.746 55.000 0.00 0.00 39.64 3.50
1565 5211 4.956075 CCCTATTAAACTCAGGCATTGGTT 59.044 41.667 0.00 0.00 0.00 3.67
1771 5418 4.838423 ACCCTCGGTGATATCATGTATCAA 59.162 41.667 9.02 4.76 35.92 2.57
2301 5950 4.574599 ATCTCCAGTGTCAAGCAAAAAC 57.425 40.909 0.00 0.00 0.00 2.43
3082 6755 7.827729 AGAGATGTTAATTGGTAAACACCCTAC 59.172 37.037 0.00 0.00 38.35 3.18
3298 7167 8.744568 TGCTTTGGTTCAAATCCTTTATTTTT 57.255 26.923 0.00 0.00 35.54 1.94
3426 7296 5.480073 CCAATCCAATGTTAACCTCCTCAAA 59.520 40.000 2.48 0.00 0.00 2.69
3505 7378 6.039270 ACTTCAAGATTTTCATGTGGTCGAAA 59.961 34.615 0.00 0.00 0.00 3.46
3551 7424 1.152546 GTTGGACAAGTGGGGCCTT 60.153 57.895 0.84 0.00 0.00 4.35
3658 7531 0.622665 AGCTCACAAAGATCCCCCAG 59.377 55.000 0.00 0.00 0.00 4.45
3718 7594 2.363683 CAAACTCTCAATCCAGGAGGC 58.636 52.381 0.00 0.00 33.18 4.70
3798 7674 3.507233 TGATTTCCAGTTGTGCTCCATTC 59.493 43.478 0.00 0.00 0.00 2.67
4079 7955 8.341173 GCTCTGTCAATTCATTCCAACTATTAG 58.659 37.037 0.00 0.00 0.00 1.73
5333 9280 1.272490 TGTACAGGAAGGAAGACAGCG 59.728 52.381 0.00 0.00 0.00 5.18
5354 9301 7.439655 GTGAAGTTCCATACTCACCTGATAATC 59.560 40.741 0.00 0.00 35.54 1.75
5361 9308 3.515901 GGAGTGAAGTTCCATACTCACCT 59.484 47.826 18.44 0.00 40.91 4.00
5588 10099 7.976175 AGAACCAAAACAAATGAAGAGAAGAAC 59.024 33.333 0.00 0.00 0.00 3.01
5594 10105 8.137437 ACACATAGAACCAAAACAAATGAAGAG 58.863 33.333 0.00 0.00 0.00 2.85
5801 10399 5.907866 TGACAATAACGTAGAGTGGATGA 57.092 39.130 0.00 0.00 0.00 2.92
5842 10442 5.198965 ACAGCAAGCCATCAGAAATTAGAT 58.801 37.500 0.00 0.00 0.00 1.98
5955 10561 4.642429 ACTGAACTTTCCAGATACACCAC 58.358 43.478 0.00 0.00 35.69 4.16
6069 10680 4.904251 ACCTGGCATCAGTAGAATGTAGAT 59.096 41.667 0.00 0.00 39.31 1.98
6086 10697 4.153411 AGTATGTAGACTGGATACCTGGC 58.847 47.826 0.00 0.00 0.00 4.85
6106 10717 2.315155 ACTGTCCTGGGGTATCAGTAGT 59.685 50.000 0.00 0.00 37.55 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.