Multiple sequence alignment - TraesCS5A01G410200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G410200 chr5A 100.000 2682 0 0 2573 5254 599392951 599390270 0.000000e+00 4953.0
1 TraesCS5A01G410200 chr5A 100.000 2288 0 0 1 2288 599395523 599393236 0.000000e+00 4226.0
2 TraesCS5A01G410200 chr5A 85.467 1273 135 19 1008 2272 599454702 599453472 0.000000e+00 1280.0
3 TraesCS5A01G410200 chr5A 86.923 910 76 18 3850 4731 599452111 599451217 0.000000e+00 981.0
4 TraesCS5A01G410200 chr5A 86.945 766 87 5 2574 3326 599453416 599452651 0.000000e+00 848.0
5 TraesCS5A01G410200 chr5A 87.156 763 56 13 254 986 599257616 599256866 0.000000e+00 828.0
6 TraesCS5A01G410200 chr5A 92.661 436 29 3 985 1418 599256593 599256159 4.470000e-175 625.0
7 TraesCS5A01G410200 chr5A 91.892 259 20 1 1 258 599257920 599257662 1.390000e-95 361.0
8 TraesCS5A01G410200 chr5A 86.885 122 13 3 3324 3445 194319150 194319268 3.300000e-27 134.0
9 TraesCS5A01G410200 chr5A 88.660 97 5 4 32 128 598891790 598891880 4.300000e-21 113.0
10 TraesCS5A01G410200 chr5A 97.297 37 1 0 4778 4814 599451223 599451187 4.390000e-06 63.9
11 TraesCS5A01G410200 chr5B 91.403 1012 48 11 4269 5254 588779051 588778053 0.000000e+00 1351.0
12 TraesCS5A01G410200 chr5B 85.347 1283 142 19 1008 2283 588781968 588780725 0.000000e+00 1286.0
13 TraesCS5A01G410200 chr5B 93.799 758 39 4 2574 3324 588780679 588779923 0.000000e+00 1133.0
14 TraesCS5A01G410200 chr5B 89.750 839 58 12 3431 4263 588779922 588779106 0.000000e+00 1048.0
15 TraesCS5A01G410200 chr5B 88.739 817 74 12 985 1788 588692301 588691490 0.000000e+00 983.0
16 TraesCS5A01G410200 chr5B 88.682 751 74 8 2575 3317 588834778 588834031 0.000000e+00 905.0
17 TraesCS5A01G410200 chr5B 86.417 773 56 16 246 982 588693295 588692536 0.000000e+00 800.0
18 TraesCS5A01G410200 chr5B 86.649 749 58 18 3997 4710 588833540 588832799 0.000000e+00 791.0
19 TraesCS5A01G410200 chr5B 93.255 341 22 1 1948 2288 588835152 588834813 7.850000e-138 501.0
20 TraesCS5A01G410200 chr5B 92.126 254 14 2 5 258 588693582 588693335 2.330000e-93 353.0
21 TraesCS5A01G410200 chr5B 89.744 234 24 0 5021 5254 588832600 588832367 3.080000e-77 300.0
22 TraesCS5A01G410200 chr5B 84.211 152 16 7 716 859 588782397 588782246 1.970000e-29 141.0
23 TraesCS5A01G410200 chr5B 89.333 75 3 2 4740 4814 588832795 588832726 7.250000e-14 89.8
24 TraesCS5A01G410200 chr7D 82.702 1214 140 39 986 2185 199131108 199129951 0.000000e+00 1014.0
25 TraesCS5A01G410200 chr7A 82.598 1224 142 32 986 2195 208527521 208526355 0.000000e+00 1014.0
26 TraesCS5A01G410200 chr5D 89.615 780 61 14 988 1755 480495081 480494310 0.000000e+00 974.0
27 TraesCS5A01G410200 chr5D 87.371 776 54 18 244 986 480496121 480495357 0.000000e+00 850.0
28 TraesCS5A01G410200 chr5D 87.868 272 20 3 1 268 480496409 480496147 1.840000e-79 307.0
29 TraesCS5A01G410200 chr5D 88.462 234 26 1 1189 1421 367433339 367433572 1.110000e-71 281.0
30 TraesCS5A01G410200 chr5D 88.732 142 16 0 983 1124 517707917 517708058 1.940000e-39 174.0
31 TraesCS5A01G410200 chr5D 90.179 112 11 0 3324 3435 299595008 299595119 4.240000e-31 147.0
32 TraesCS5A01G410200 chr5D 90.090 111 9 2 3324 3433 503077628 503077519 5.480000e-30 143.0
33 TraesCS5A01G410200 chr5D 88.172 93 6 3 32 124 480422543 480422630 7.200000e-19 106.0
34 TraesCS5A01G410200 chr7B 88.395 405 31 6 986 1389 163012325 163011936 1.710000e-129 473.0
35 TraesCS5A01G410200 chr7B 83.803 426 62 6 1777 2197 163011388 163010965 1.060000e-106 398.0
36 TraesCS5A01G410200 chr6D 82.302 582 59 16 1314 1889 132305502 132306045 1.030000e-126 464.0
37 TraesCS5A01G410200 chr6D 88.235 119 14 0 3316 3434 203403789 203403671 5.480000e-30 143.0
38 TraesCS5A01G410200 chr6D 88.991 109 12 0 4561 4669 456251758 456251650 9.180000e-28 135.0
39 TraesCS5A01G410200 chr6D 100.000 29 0 0 288 316 63327252 63327280 3.000000e-03 54.7
40 TraesCS5A01G410200 chr4A 85.781 429 55 6 1212 1636 337547513 337547939 2.890000e-122 449.0
41 TraesCS5A01G410200 chr2A 85.504 407 46 6 1495 1889 734968645 734968240 3.790000e-111 412.0
42 TraesCS5A01G410200 chr2A 90.455 220 21 0 5035 5254 5785648 5785429 1.850000e-74 291.0
43 TraesCS5A01G410200 chr2A 89.286 112 12 0 3324 3435 728810470 728810581 1.970000e-29 141.0
44 TraesCS5A01G410200 chrUn 87.671 219 27 0 5036 5254 177132905 177132687 6.750000e-64 255.0
45 TraesCS5A01G410200 chrUn 87.671 219 27 0 5036 5254 306187850 306187632 6.750000e-64 255.0
46 TraesCS5A01G410200 chr2B 87.671 219 27 0 5036 5254 3787559 3787777 6.750000e-64 255.0
47 TraesCS5A01G410200 chr2B 88.601 193 22 0 5062 5254 1317985 1317793 8.800000e-58 235.0
48 TraesCS5A01G410200 chr2B 87.097 93 7 3 32 124 773634434 773634521 3.350000e-17 100.0
49 TraesCS5A01G410200 chr6A 86.316 190 21 5 1 187 80804897 80805084 8.920000e-48 202.0
50 TraesCS5A01G410200 chr6A 100.000 29 0 0 288 316 80805112 80805140 3.000000e-03 54.7
51 TraesCS5A01G410200 chr1D 80.634 284 20 16 246 500 393439871 393440148 2.500000e-43 187.0
52 TraesCS5A01G410200 chr1B 85.795 176 16 7 246 414 529508835 529508662 1.500000e-40 178.0
53 TraesCS5A01G410200 chr1B 83.537 164 17 2 254 413 529576438 529576281 1.520000e-30 145.0
54 TraesCS5A01G410200 chr3B 90.741 108 10 0 3324 3431 22830519 22830626 1.520000e-30 145.0
55 TraesCS5A01G410200 chr3D 90.654 107 10 0 3324 3430 2592554 2592448 5.480000e-30 143.0
56 TraesCS5A01G410200 chr1A 83.237 173 11 11 246 414 492200393 492200235 5.480000e-30 143.0
57 TraesCS5A01G410200 chr1A 89.286 112 12 0 3323 3434 498624219 498624330 1.970000e-29 141.0
58 TraesCS5A01G410200 chr1A 86.885 122 13 3 3324 3445 351107478 351107360 3.300000e-27 134.0
59 TraesCS5A01G410200 chr6B 87.013 77 5 3 34 110 125470563 125470492 1.210000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G410200 chr5A 599390270 599395523 5253 True 4589.500000 4953 100.000000 1 5254 2 chr5A.!!$R2 5253
1 TraesCS5A01G410200 chr5A 599451187 599454702 3515 True 793.225000 1280 89.158000 1008 4814 4 chr5A.!!$R3 3806
2 TraesCS5A01G410200 chr5A 599256159 599257920 1761 True 604.666667 828 90.569667 1 1418 3 chr5A.!!$R1 1417
3 TraesCS5A01G410200 chr5B 588778053 588782397 4344 True 991.800000 1351 88.902000 716 5254 5 chr5B.!!$R2 4538
4 TraesCS5A01G410200 chr5B 588691490 588693582 2092 True 712.000000 983 89.094000 5 1788 3 chr5B.!!$R1 1783
5 TraesCS5A01G410200 chr5B 588832367 588835152 2785 True 517.360000 905 89.532600 1948 5254 5 chr5B.!!$R3 3306
6 TraesCS5A01G410200 chr7D 199129951 199131108 1157 True 1014.000000 1014 82.702000 986 2185 1 chr7D.!!$R1 1199
7 TraesCS5A01G410200 chr7A 208526355 208527521 1166 True 1014.000000 1014 82.598000 986 2195 1 chr7A.!!$R1 1209
8 TraesCS5A01G410200 chr5D 480494310 480496409 2099 True 710.333333 974 88.284667 1 1755 3 chr5D.!!$R2 1754
9 TraesCS5A01G410200 chr7B 163010965 163012325 1360 True 435.500000 473 86.099000 986 2197 2 chr7B.!!$R1 1211
10 TraesCS5A01G410200 chr6D 132305502 132306045 543 False 464.000000 464 82.302000 1314 1889 1 chr6D.!!$F2 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
513 583 0.396435 TCAATCCTGACAACGCCACT 59.604 50.000 0.0 0.0 0.00 4.00 F
880 971 0.968405 GCCATCAAAGAAGTGGGCAA 59.032 50.000 0.0 0.0 41.02 4.52 F
881 972 1.067354 GCCATCAAAGAAGTGGGCAAG 60.067 52.381 0.0 0.0 41.02 4.01 F
882 973 1.067354 CCATCAAAGAAGTGGGCAAGC 60.067 52.381 0.0 0.0 0.00 4.01 F
2683 3326 0.601046 ACGCTGATATGGCACGATGG 60.601 55.000 0.0 0.0 0.00 3.51 F
2807 3462 0.322098 CTGTACGGGTTTGCCATGGA 60.322 55.000 18.4 0.0 36.17 3.41 F
3663 4333 0.033601 AACAAACACTGGACCTGCCA 60.034 50.000 0.0 0.0 46.96 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1839 2476 0.248289 TAGCACACCGGCTAGGAAAC 59.752 55.000 0.00 0.0 43.70 2.78 R
2621 3264 0.238289 GTGCGACCAACTTCCACATG 59.762 55.000 0.00 0.0 0.00 3.21 R
2683 3326 1.337823 ACAGAAGGGTCATGTGCGTAC 60.338 52.381 0.00 0.0 0.00 3.67 R
2797 3452 1.606668 GAACGACAAGTCCATGGCAAA 59.393 47.619 6.96 0.0 0.00 3.68 R
3516 4181 0.038310 CCAAGACCTCCCAAAGACCC 59.962 60.000 0.00 0.0 0.00 4.46 R
3848 4646 1.032114 CGGCCACCCCTGATCTTTTC 61.032 60.000 2.24 0.0 0.00 2.29 R
4818 5697 0.623324 ACCCAGGCCAGGTATAAGCA 60.623 55.000 15.53 0.0 35.24 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
147 152 4.624364 TGTGTGACCTGCCGCTGG 62.624 66.667 14.39 14.39 0.00 4.85
316 372 4.395854 TGTATGCATTGTCTGATTGTCACC 59.604 41.667 3.54 0.00 0.00 4.02
376 433 9.897744 CTTTTGTTAGATTGTTAAGCATTGAGA 57.102 29.630 0.00 0.00 0.00 3.27
415 472 2.825532 TGAGCAACTGGGCTTTATTTCC 59.174 45.455 0.00 0.00 45.99 3.13
423 493 0.758734 GGCTTTATTTCCCATGGGGC 59.241 55.000 30.93 22.39 43.94 5.80
428 498 4.707105 CTTTATTTCCCATGGGGCATTTC 58.293 43.478 30.93 0.00 43.94 2.17
467 537 5.350914 TGCCAAAGTTTTTCAATGTTGACAG 59.649 36.000 0.00 0.00 36.83 3.51
505 575 2.238521 GGGTTTGCTTCAATCCTGACA 58.761 47.619 6.61 0.00 34.63 3.58
506 576 2.627699 GGGTTTGCTTCAATCCTGACAA 59.372 45.455 6.61 0.00 34.63 3.18
513 583 0.396435 TCAATCCTGACAACGCCACT 59.604 50.000 0.00 0.00 0.00 4.00
655 725 1.540363 GGTCTGTGAACTTCGGCTCAA 60.540 52.381 0.00 0.00 0.00 3.02
656 726 2.417719 GTCTGTGAACTTCGGCTCAAT 58.582 47.619 0.00 0.00 0.00 2.57
657 727 3.585862 GTCTGTGAACTTCGGCTCAATA 58.414 45.455 0.00 0.00 0.00 1.90
658 728 3.614616 GTCTGTGAACTTCGGCTCAATAG 59.385 47.826 0.00 0.00 0.00 1.73
659 729 3.509967 TCTGTGAACTTCGGCTCAATAGA 59.490 43.478 0.00 0.00 0.00 1.98
661 731 3.258372 TGTGAACTTCGGCTCAATAGAGT 59.742 43.478 0.00 0.00 44.00 3.24
662 732 4.246458 GTGAACTTCGGCTCAATAGAGTT 58.754 43.478 0.00 0.00 44.00 3.01
663 733 4.092091 GTGAACTTCGGCTCAATAGAGTTG 59.908 45.833 0.00 0.00 44.00 3.16
668 748 2.099921 TCGGCTCAATAGAGTTGAGAGC 59.900 50.000 18.93 9.81 46.57 4.09
675 755 5.265191 TCAATAGAGTTGAGAGCCACTAGT 58.735 41.667 0.00 0.00 0.00 2.57
730 814 6.262601 ACTAGTTATTGTTGTGTGTGTTTGC 58.737 36.000 0.00 0.00 0.00 3.68
819 910 9.774742 GACCAGATATCACAGAAATAAACAAAC 57.225 33.333 5.32 0.00 0.00 2.93
821 912 9.778993 CCAGATATCACAGAAATAAACAAACAG 57.221 33.333 5.32 0.00 0.00 3.16
843 934 8.807667 ACAGTTTCAGTGATTTCATTTCATTC 57.192 30.769 0.00 0.00 0.00 2.67
868 959 7.882791 TCAAACTAACTTCAGATAAGCCATCAA 59.117 33.333 0.00 0.00 35.96 2.57
874 965 6.479884 ACTTCAGATAAGCCATCAAAGAAGT 58.520 36.000 16.78 16.78 41.99 3.01
876 967 5.188434 TCAGATAAGCCATCAAAGAAGTGG 58.812 41.667 0.00 0.00 35.96 4.00
878 969 1.260544 AAGCCATCAAAGAAGTGGGC 58.739 50.000 0.00 0.00 41.65 5.36
880 971 0.968405 GCCATCAAAGAAGTGGGCAA 59.032 50.000 0.00 0.00 41.02 4.52
881 972 1.067354 GCCATCAAAGAAGTGGGCAAG 60.067 52.381 0.00 0.00 41.02 4.01
882 973 1.067354 CCATCAAAGAAGTGGGCAAGC 60.067 52.381 0.00 0.00 0.00 4.01
884 975 1.999648 TCAAAGAAGTGGGCAAGCAT 58.000 45.000 0.00 0.00 0.00 3.79
927 1020 3.243068 GCGCACAACTTAAGGGAATATGG 60.243 47.826 0.30 0.00 0.00 2.74
940 1033 2.959030 GGAATATGGGTCTCCTTTTGGC 59.041 50.000 0.00 0.00 40.12 4.52
1124 1508 5.178797 CCTGGATAAGGTAGTGTGAACTTG 58.821 45.833 0.00 0.00 41.74 3.16
1141 1525 5.647658 TGAACTTGGGTCACATAATCATCAC 59.352 40.000 0.00 0.00 0.00 3.06
1165 1549 5.021033 ACATGCCAAGATTTTGTTCACAA 57.979 34.783 0.00 0.00 32.21 3.33
1209 1594 9.762381 ACCCAATGGTTCTTAAATGTATTTCTA 57.238 29.630 0.00 0.00 44.75 2.10
1313 1699 3.386078 CGGATTCATCTTTCCAGGAGAGA 59.614 47.826 12.10 12.10 31.99 3.10
1396 1782 9.667107 TTAAAGAATGGGAGATGTTACTACTTG 57.333 33.333 0.00 0.00 0.00 3.16
1479 1869 3.057526 GGGTGACTACATTGCTTTTCCAC 60.058 47.826 0.00 0.00 0.00 4.02
1598 1997 4.281182 GCCTTCTTAGTAGTGCCTAGCATA 59.719 45.833 0.00 0.00 41.91 3.14
1627 2026 6.845302 TGATGTGCTTGCATAGAACTAAAAG 58.155 36.000 0.00 0.00 33.07 2.27
1657 2056 6.039382 GGGATTGATATGGTAAGTTTGTCACC 59.961 42.308 0.00 0.00 0.00 4.02
1659 2058 7.201732 GGATTGATATGGTAAGTTTGTCACCTG 60.202 40.741 0.00 0.00 33.28 4.00
1794 2428 1.615392 GATCCAGTTTGCCTTGCTGTT 59.385 47.619 0.00 0.00 0.00 3.16
1826 2463 5.007528 GCTGATTATTTCTCTGGCTCAAGTC 59.992 44.000 0.00 0.00 0.00 3.01
1839 2476 2.731976 GCTCAAGTCGGTAGTCTTGTTG 59.268 50.000 0.00 0.00 41.83 3.33
1870 2507 3.303791 CCGGTGTGCTACTTCTTTTGAAC 60.304 47.826 0.00 0.00 34.31 3.18
1892 2529 7.753580 TGAACGACTCACTGTAAATAGTATGTG 59.246 37.037 0.00 0.00 0.00 3.21
1896 2533 9.302345 CGACTCACTGTAAATAGTATGTGAAAT 57.698 33.333 0.00 0.00 34.64 2.17
1908 2545 9.474313 AATAGTATGTGAAATTTGTACCATGGT 57.526 29.630 23.55 23.55 0.00 3.55
1918 2559 2.778299 TGTACCATGGTTGCACTTCTC 58.222 47.619 25.38 3.64 0.00 2.87
1932 2573 2.346847 CACTTCTCATGTCGCTGTTAGC 59.653 50.000 0.00 0.00 38.02 3.09
1938 2579 2.223144 TCATGTCGCTGTTAGCACAAAC 59.777 45.455 1.45 0.00 42.58 2.93
1946 2587 5.411361 TCGCTGTTAGCACAAACTTTATGAT 59.589 36.000 1.45 0.00 42.58 2.45
1975 2616 8.932791 CGTAATCCGAGGCTTTATACATTTTAT 58.067 33.333 0.00 0.00 39.56 1.40
2005 2646 5.831103 TGCTTAGATTCCCTTCATTTTCCT 58.169 37.500 0.00 0.00 0.00 3.36
2022 2663 5.948742 TTTCCTCATTTTGGACAGGTTTT 57.051 34.783 0.00 0.00 32.65 2.43
2051 2692 4.142160 GGTTATTGATGTTCAGGCCCTTTC 60.142 45.833 0.00 0.00 0.00 2.62
2166 2808 9.860898 GCTAATTGATTTTCAACCTTCTGTAAT 57.139 29.630 0.00 0.00 39.45 1.89
2192 2834 5.163764 CCTTGCTTGAATTCATGCGTACTTA 60.164 40.000 30.08 16.06 46.27 2.24
2232 2875 8.252417 TCAATTTTCATAACATATTGCACTGCT 58.748 29.630 1.98 0.00 0.00 4.24
2621 3264 3.257375 ACCTTATTTGTTTTCTTCCGGGC 59.743 43.478 0.00 0.00 0.00 6.13
2683 3326 0.601046 ACGCTGATATGGCACGATGG 60.601 55.000 0.00 0.00 0.00 3.51
2766 3421 4.287067 TCAGTGAATTCTAAGCCCAAGTCT 59.713 41.667 7.05 0.00 0.00 3.24
2797 3452 1.553704 GGTTGGAGAATCTGTACGGGT 59.446 52.381 0.85 0.00 33.73 5.28
2807 3462 0.322098 CTGTACGGGTTTGCCATGGA 60.322 55.000 18.40 0.00 36.17 3.41
2831 3486 2.167693 TGTCGTTCTCTTCACACCTGTT 59.832 45.455 0.00 0.00 0.00 3.16
2858 3519 3.350833 AGAAATCGGTAGTCGGTACAGT 58.649 45.455 0.00 0.00 39.77 3.55
2911 3574 8.883731 AGGTTGATATTTCATTCAGAGTAAACG 58.116 33.333 0.00 0.00 0.00 3.60
2946 3610 6.763610 GGAAGTGATAGGATAGTGTGGAAAAG 59.236 42.308 0.00 0.00 0.00 2.27
3035 3699 1.663739 GTGGTGGTGCTCGTAGACA 59.336 57.895 0.00 0.00 0.00 3.41
3038 3702 0.601558 GGTGGTGCTCGTAGACAAGA 59.398 55.000 0.00 0.00 0.00 3.02
3134 3798 1.903860 AGGTACCTTGCGACATGGTAA 59.096 47.619 9.21 7.52 42.83 2.85
3155 3819 1.904287 TGCTGGCATTTAAAGACCGT 58.096 45.000 0.00 0.00 0.00 4.83
3215 3879 4.421554 AGCTGCAGCCCCCTCCTA 62.422 66.667 34.39 0.00 43.38 2.94
3308 3973 4.978186 TGTTAGATTCCTAAGACGACACG 58.022 43.478 0.00 0.00 35.69 4.49
3326 3991 3.625764 ACACGCACTGTTTGTTTCATACT 59.374 39.130 0.00 0.00 0.00 2.12
3327 3992 4.211389 CACGCACTGTTTGTTTCATACTC 58.789 43.478 0.00 0.00 0.00 2.59
3328 3993 3.250040 ACGCACTGTTTGTTTCATACTCC 59.750 43.478 0.00 0.00 0.00 3.85
3329 3994 3.364964 CGCACTGTTTGTTTCATACTCCC 60.365 47.826 0.00 0.00 0.00 4.30
3330 3995 3.821033 GCACTGTTTGTTTCATACTCCCT 59.179 43.478 0.00 0.00 0.00 4.20
3331 3996 4.083271 GCACTGTTTGTTTCATACTCCCTC 60.083 45.833 0.00 0.00 0.00 4.30
3332 3997 4.455877 CACTGTTTGTTTCATACTCCCTCC 59.544 45.833 0.00 0.00 0.00 4.30
3333 3998 4.104102 ACTGTTTGTTTCATACTCCCTCCA 59.896 41.667 0.00 0.00 0.00 3.86
3335 4000 5.253330 TGTTTGTTTCATACTCCCTCCATC 58.747 41.667 0.00 0.00 0.00 3.51
3336 4001 4.503714 TTGTTTCATACTCCCTCCATCC 57.496 45.455 0.00 0.00 0.00 3.51
3337 4002 3.459828 TGTTTCATACTCCCTCCATCCA 58.540 45.455 0.00 0.00 0.00 3.41
3338 4003 3.849574 TGTTTCATACTCCCTCCATCCAA 59.150 43.478 0.00 0.00 0.00 3.53
3339 4004 4.290985 TGTTTCATACTCCCTCCATCCAAA 59.709 41.667 0.00 0.00 0.00 3.28
3340 4005 5.222233 TGTTTCATACTCCCTCCATCCAAAA 60.222 40.000 0.00 0.00 0.00 2.44
3341 4006 5.732331 TTCATACTCCCTCCATCCAAAAT 57.268 39.130 0.00 0.00 0.00 1.82
3342 4007 5.732331 TCATACTCCCTCCATCCAAAATT 57.268 39.130 0.00 0.00 0.00 1.82
3343 4008 6.840090 TCATACTCCCTCCATCCAAAATTA 57.160 37.500 0.00 0.00 0.00 1.40
3344 4009 6.601332 TCATACTCCCTCCATCCAAAATTAC 58.399 40.000 0.00 0.00 0.00 1.89
3345 4010 6.389869 TCATACTCCCTCCATCCAAAATTACT 59.610 38.462 0.00 0.00 0.00 2.24
3346 4011 5.536497 ACTCCCTCCATCCAAAATTACTT 57.464 39.130 0.00 0.00 0.00 2.24
3347 4012 5.264395 ACTCCCTCCATCCAAAATTACTTG 58.736 41.667 0.00 0.00 0.00 3.16
3348 4013 5.222337 ACTCCCTCCATCCAAAATTACTTGT 60.222 40.000 0.00 0.00 0.00 3.16
3349 4014 5.261216 TCCCTCCATCCAAAATTACTTGTC 58.739 41.667 0.00 0.00 0.00 3.18
3350 4015 4.096382 CCCTCCATCCAAAATTACTTGTCG 59.904 45.833 0.00 0.00 0.00 4.35
3351 4016 4.438744 CCTCCATCCAAAATTACTTGTCGC 60.439 45.833 0.00 0.00 0.00 5.19
3352 4017 4.075682 TCCATCCAAAATTACTTGTCGCA 58.924 39.130 0.00 0.00 0.00 5.10
3353 4018 4.155826 TCCATCCAAAATTACTTGTCGCAG 59.844 41.667 0.00 0.00 0.00 5.18
3354 4019 4.155826 CCATCCAAAATTACTTGTCGCAGA 59.844 41.667 0.00 0.00 0.00 4.26
3355 4020 5.335583 CCATCCAAAATTACTTGTCGCAGAA 60.336 40.000 0.00 0.00 39.69 3.02
3356 4021 5.759506 TCCAAAATTACTTGTCGCAGAAA 57.240 34.783 0.00 0.00 39.69 2.52
3357 4022 6.325919 TCCAAAATTACTTGTCGCAGAAAT 57.674 33.333 0.00 0.00 39.69 2.17
3358 4023 6.148948 TCCAAAATTACTTGTCGCAGAAATG 58.851 36.000 0.00 0.00 39.69 2.32
3359 4024 5.345741 CCAAAATTACTTGTCGCAGAAATGG 59.654 40.000 0.00 0.00 39.69 3.16
3360 4025 5.957842 AAATTACTTGTCGCAGAAATGGA 57.042 34.783 0.00 0.00 39.69 3.41
3361 4026 6.515272 AAATTACTTGTCGCAGAAATGGAT 57.485 33.333 0.00 0.00 39.69 3.41
3362 4027 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
3363 4028 1.470098 ACTTGTCGCAGAAATGGATGC 59.530 47.619 0.00 0.00 39.69 3.91
3364 4029 1.469703 CTTGTCGCAGAAATGGATGCA 59.530 47.619 0.00 0.00 42.68 3.96
3365 4030 1.753930 TGTCGCAGAAATGGATGCAT 58.246 45.000 0.00 0.00 42.68 3.96
3366 4031 1.672363 TGTCGCAGAAATGGATGCATC 59.328 47.619 18.81 18.81 42.68 3.91
3367 4032 1.945394 GTCGCAGAAATGGATGCATCT 59.055 47.619 25.28 6.25 42.68 2.90
3368 4033 3.133691 GTCGCAGAAATGGATGCATCTA 58.866 45.455 25.28 20.79 42.68 1.98
3369 4034 3.186001 GTCGCAGAAATGGATGCATCTAG 59.814 47.826 25.28 9.06 42.68 2.43
3370 4035 3.070015 TCGCAGAAATGGATGCATCTAGA 59.930 43.478 25.28 9.00 42.68 2.43
3371 4036 3.811497 CGCAGAAATGGATGCATCTAGAA 59.189 43.478 25.28 10.04 42.68 2.10
3372 4037 4.319333 CGCAGAAATGGATGCATCTAGAAC 60.319 45.833 25.28 14.10 42.68 3.01
3373 4038 4.820716 GCAGAAATGGATGCATCTAGAACT 59.179 41.667 25.28 15.90 42.11 3.01
3374 4039 5.994054 GCAGAAATGGATGCATCTAGAACTA 59.006 40.000 25.28 0.00 42.11 2.24
3375 4040 6.484643 GCAGAAATGGATGCATCTAGAACTAA 59.515 38.462 25.28 3.09 42.11 2.24
3376 4041 7.012704 GCAGAAATGGATGCATCTAGAACTAAA 59.987 37.037 25.28 2.12 42.11 1.85
3377 4042 8.896744 CAGAAATGGATGCATCTAGAACTAAAA 58.103 33.333 25.28 0.70 0.00 1.52
3378 4043 9.638176 AGAAATGGATGCATCTAGAACTAAAAT 57.362 29.630 25.28 0.00 0.00 1.82
3381 4046 7.946655 TGGATGCATCTAGAACTAAAATACG 57.053 36.000 25.28 0.00 0.00 3.06
3382 4047 7.497595 TGGATGCATCTAGAACTAAAATACGT 58.502 34.615 25.28 0.00 0.00 3.57
3383 4048 7.652105 TGGATGCATCTAGAACTAAAATACGTC 59.348 37.037 25.28 3.59 0.00 4.34
3384 4049 7.868415 GGATGCATCTAGAACTAAAATACGTCT 59.132 37.037 25.28 0.00 0.00 4.18
3385 4050 9.894783 GATGCATCTAGAACTAAAATACGTCTA 57.105 33.333 19.70 0.00 0.00 2.59
3386 4051 9.900710 ATGCATCTAGAACTAAAATACGTCTAG 57.099 33.333 0.00 0.00 0.00 2.43
3387 4052 9.117183 TGCATCTAGAACTAAAATACGTCTAGA 57.883 33.333 10.27 10.27 38.94 2.43
3400 4065 9.490379 AAAATACGTCTAGATACATCCATTTCC 57.510 33.333 0.00 0.00 0.00 3.13
3401 4066 5.122512 ACGTCTAGATACATCCATTTCCG 57.877 43.478 0.00 0.00 0.00 4.30
3402 4067 4.583489 ACGTCTAGATACATCCATTTCCGT 59.417 41.667 0.00 0.00 0.00 4.69
3403 4068 4.917998 CGTCTAGATACATCCATTTCCGTG 59.082 45.833 0.00 0.00 0.00 4.94
3404 4069 5.230942 GTCTAGATACATCCATTTCCGTGG 58.769 45.833 0.00 0.00 40.76 4.94
3405 4070 2.851195 AGATACATCCATTTCCGTGGC 58.149 47.619 0.00 0.00 39.19 5.01
3406 4071 2.172505 AGATACATCCATTTCCGTGGCA 59.827 45.455 0.00 0.00 39.19 4.92
3407 4072 2.498644 TACATCCATTTCCGTGGCAA 57.501 45.000 0.00 0.00 39.19 4.52
3408 4073 1.176527 ACATCCATTTCCGTGGCAAG 58.823 50.000 0.00 0.00 39.19 4.01
3409 4074 1.176527 CATCCATTTCCGTGGCAAGT 58.823 50.000 0.00 0.00 39.19 3.16
3410 4075 2.290641 ACATCCATTTCCGTGGCAAGTA 60.291 45.455 0.00 0.00 39.19 2.24
3411 4076 2.570415 TCCATTTCCGTGGCAAGTAA 57.430 45.000 0.00 0.00 39.19 2.24
3412 4077 3.080300 TCCATTTCCGTGGCAAGTAAT 57.920 42.857 0.00 0.00 39.19 1.89
3413 4078 3.426615 TCCATTTCCGTGGCAAGTAATT 58.573 40.909 0.00 0.00 39.19 1.40
3414 4079 3.442273 TCCATTTCCGTGGCAAGTAATTC 59.558 43.478 0.00 0.00 39.19 2.17
3415 4080 3.428862 CCATTTCCGTGGCAAGTAATTCC 60.429 47.826 0.00 0.00 31.43 3.01
3416 4081 2.570415 TTCCGTGGCAAGTAATTCCA 57.430 45.000 0.00 0.00 0.00 3.53
3417 4082 2.107950 TCCGTGGCAAGTAATTCCAG 57.892 50.000 0.00 0.00 0.00 3.86
3418 4083 1.626321 TCCGTGGCAAGTAATTCCAGA 59.374 47.619 0.00 0.00 0.00 3.86
3419 4084 1.737793 CCGTGGCAAGTAATTCCAGAC 59.262 52.381 0.00 0.00 0.00 3.51
3420 4085 1.737793 CGTGGCAAGTAATTCCAGACC 59.262 52.381 0.00 0.00 0.00 3.85
3421 4086 1.737793 GTGGCAAGTAATTCCAGACCG 59.262 52.381 0.00 0.00 0.00 4.79
3422 4087 1.626321 TGGCAAGTAATTCCAGACCGA 59.374 47.619 0.00 0.00 0.00 4.69
3423 4088 2.280628 GGCAAGTAATTCCAGACCGAG 58.719 52.381 0.00 0.00 0.00 4.63
3424 4089 2.280628 GCAAGTAATTCCAGACCGAGG 58.719 52.381 0.00 0.00 0.00 4.63
3425 4090 2.906354 CAAGTAATTCCAGACCGAGGG 58.094 52.381 0.00 0.00 0.00 4.30
3426 4091 2.500098 CAAGTAATTCCAGACCGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
3427 4092 2.108970 AGTAATTCCAGACCGAGGGAC 58.891 52.381 0.00 0.00 31.59 4.46
3429 4094 2.544844 AATTCCAGACCGAGGGACTA 57.455 50.000 0.00 0.00 41.55 2.59
3443 4108 4.082949 CGAGGGACTACATGCGTATTATGA 60.083 45.833 0.00 0.00 41.55 2.15
3493 4158 7.094848 GCTTTTGAGCTCCTTATATCCTTGATC 60.095 40.741 12.15 0.00 0.00 2.92
3498 4163 8.099537 TGAGCTCCTTATATCCTTGATCAATTC 58.900 37.037 12.15 0.00 0.00 2.17
3505 4170 4.907879 ATCCTTGATCAATTCGCCTTTC 57.092 40.909 8.96 0.00 0.00 2.62
3507 4172 3.019564 CCTTGATCAATTCGCCTTTCCT 58.980 45.455 8.96 0.00 0.00 3.36
3508 4173 4.080582 TCCTTGATCAATTCGCCTTTCCTA 60.081 41.667 8.96 0.00 0.00 2.94
3509 4174 4.823989 CCTTGATCAATTCGCCTTTCCTAT 59.176 41.667 8.96 0.00 0.00 2.57
3510 4175 5.049129 CCTTGATCAATTCGCCTTTCCTATC 60.049 44.000 8.96 0.00 0.00 2.08
3511 4176 4.058124 TGATCAATTCGCCTTTCCTATCG 58.942 43.478 0.00 0.00 0.00 2.92
3513 4178 2.169769 TCAATTCGCCTTTCCTATCGGT 59.830 45.455 0.00 0.00 0.00 4.69
3514 4179 2.943033 CAATTCGCCTTTCCTATCGGTT 59.057 45.455 0.00 0.00 0.00 4.44
3515 4180 2.773993 TTCGCCTTTCCTATCGGTTT 57.226 45.000 0.00 0.00 0.00 3.27
3516 4181 2.018542 TCGCCTTTCCTATCGGTTTG 57.981 50.000 0.00 0.00 0.00 2.93
3517 4182 1.014352 CGCCTTTCCTATCGGTTTGG 58.986 55.000 0.00 0.00 0.00 3.28
3518 4183 1.389555 GCCTTTCCTATCGGTTTGGG 58.610 55.000 0.00 0.00 0.00 4.12
3519 4184 1.340697 GCCTTTCCTATCGGTTTGGGT 60.341 52.381 0.00 0.00 0.00 4.51
3520 4185 2.640184 CCTTTCCTATCGGTTTGGGTC 58.360 52.381 0.00 0.00 0.00 4.46
3591 4261 9.549078 AGTTTTTGTTAAAAAGTTTGACTTCCA 57.451 25.926 0.12 0.00 40.20 3.53
3598 4268 0.535102 AGTTTGACTTCCAGGTGCCG 60.535 55.000 0.00 0.00 0.00 5.69
3662 4332 0.668535 GAACAAACACTGGACCTGCC 59.331 55.000 0.00 0.00 37.10 4.85
3663 4333 0.033601 AACAAACACTGGACCTGCCA 60.034 50.000 0.00 0.00 46.96 4.92
3727 4397 7.253422 CCTTTTGGTATCACTTGCATTTAGAG 58.747 38.462 0.00 0.00 34.07 2.43
3728 4398 7.121168 CCTTTTGGTATCACTTGCATTTAGAGA 59.879 37.037 0.00 0.00 34.07 3.10
3770 4441 4.509915 TTCAGACAGTTTCGAAAACGTC 57.490 40.909 23.62 23.62 0.00 4.34
3773 4444 4.032445 TCAGACAGTTTCGAAAACGTCAAG 59.968 41.667 28.68 23.00 0.00 3.02
3787 4458 1.877443 CGTCAAGTTTCCGTTTGGGAT 59.123 47.619 0.00 0.00 46.62 3.85
3801 4472 5.637387 CCGTTTGGGATTCAGTTAAAAATGG 59.363 40.000 0.00 0.00 38.47 3.16
3825 4623 0.304705 CTTTCGCCGAAATCCATCCG 59.695 55.000 13.29 0.00 30.85 4.18
3880 4688 2.105993 GGGTGGCCGGTAAGAATCTATT 59.894 50.000 1.90 0.00 0.00 1.73
3881 4689 3.434596 GGGTGGCCGGTAAGAATCTATTT 60.435 47.826 1.90 0.00 0.00 1.40
3914 4722 9.923143 ATTGCTCATCATTATTATGATTTGTGG 57.077 29.630 4.46 0.00 46.88 4.17
3942 4750 9.883142 TTGAGTTCCAAACATTGTTCTTTTTAT 57.117 25.926 1.83 0.00 0.00 1.40
3943 4751 9.883142 TGAGTTCCAAACATTGTTCTTTTTATT 57.117 25.926 1.83 0.00 0.00 1.40
4082 4897 0.247460 CTCCAGCATGTCTCGTCCAA 59.753 55.000 0.00 0.00 0.00 3.53
4121 4936 0.106268 TTGGGGTTCATGTGCACTGT 60.106 50.000 19.41 3.75 0.00 3.55
4138 4953 0.386476 TGTGCCGTACGAAGAAGTGT 59.614 50.000 18.76 0.00 0.00 3.55
4154 4969 1.003112 TGTAAACAAGGCGGCGGAT 60.003 52.632 9.78 0.00 0.00 4.18
4191 5006 1.011333 CGTTCACCACGTTTCTGGTT 58.989 50.000 0.00 0.00 42.29 3.67
4206 5021 3.692406 GTTCCCTCCACGGCGACT 61.692 66.667 16.62 0.00 0.00 4.18
4336 5207 1.754745 GTTGGACACTGGAGAGGCA 59.245 57.895 0.00 0.00 0.00 4.75
4348 5219 1.003580 GGAGAGGCAACATGGAAGACA 59.996 52.381 0.00 0.00 41.41 3.41
4353 5224 1.895131 GGCAACATGGAAGACACCATT 59.105 47.619 0.00 0.00 47.00 3.16
4452 5323 2.092212 CCTCCAAGGTATGCAAGTGGAT 60.092 50.000 0.00 0.00 37.72 3.41
4506 5381 1.237285 ACGCCAAGCAAGTGATGGAC 61.237 55.000 7.52 0.28 36.27 4.02
4510 5385 2.012673 CCAAGCAAGTGATGGACTAGC 58.987 52.381 0.00 0.00 36.27 3.42
4519 5394 4.833390 AGTGATGGACTAGCAAAGGTAAC 58.167 43.478 0.00 0.00 30.86 2.50
4520 5395 4.532521 AGTGATGGACTAGCAAAGGTAACT 59.467 41.667 0.00 0.00 41.37 2.24
4521 5396 5.720041 AGTGATGGACTAGCAAAGGTAACTA 59.280 40.000 0.00 0.00 38.98 2.24
4522 5397 6.127310 AGTGATGGACTAGCAAAGGTAACTAG 60.127 42.308 0.00 0.00 38.98 2.57
4558 5437 3.335786 GCAAGATGCATGTGCTTAGAG 57.664 47.619 19.92 2.56 44.26 2.43
4671 5550 0.393077 ACACAAACTAGCTCCTGCGT 59.607 50.000 0.00 0.00 45.42 5.24
4767 5646 7.401246 AGACTAAATTGATTCTCTTTCCTGCT 58.599 34.615 0.00 0.00 0.00 4.24
4768 5647 8.543774 AGACTAAATTGATTCTCTTTCCTGCTA 58.456 33.333 0.00 0.00 0.00 3.49
4769 5648 8.499403 ACTAAATTGATTCTCTTTCCTGCTAC 57.501 34.615 0.00 0.00 0.00 3.58
4770 5649 6.428385 AAATTGATTCTCTTTCCTGCTACG 57.572 37.500 0.00 0.00 0.00 3.51
4847 5726 2.426414 CCTGGCCTGGGTCTCTATCTAA 60.426 54.545 20.77 0.00 0.00 2.10
4848 5727 3.515562 CTGGCCTGGGTCTCTATCTAAT 58.484 50.000 3.32 0.00 0.00 1.73
4849 5728 4.511112 CCTGGCCTGGGTCTCTATCTAATA 60.511 50.000 20.77 0.00 0.00 0.98
4851 5730 4.838986 TGGCCTGGGTCTCTATCTAATAAC 59.161 45.833 3.32 0.00 0.00 1.89
4852 5731 5.088026 GGCCTGGGTCTCTATCTAATAACT 58.912 45.833 0.00 0.00 0.00 2.24
4854 5733 6.295405 GGCCTGGGTCTCTATCTAATAACTTC 60.295 46.154 0.00 0.00 0.00 3.01
4857 5736 9.589461 CCTGGGTCTCTATCTAATAACTTCTTA 57.411 37.037 0.00 0.00 0.00 2.10
4914 5794 6.709018 TTCCTCTCTTTTCGGAAAACAAAT 57.291 33.333 11.68 0.00 34.10 2.32
4969 5866 7.513091 GGGGCCTAGTGCTATATAAATACCTAT 59.487 40.741 0.84 0.00 40.92 2.57
5122 6019 0.255890 GGTATCTGCTTTGGAGGCCA 59.744 55.000 5.01 0.00 0.00 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
129 134 3.046087 CAGCGGCAGGTCACACAG 61.046 66.667 1.45 0.00 0.00 3.66
171 176 2.973945 AGACCAAATTACCAGCGAGAC 58.026 47.619 0.00 0.00 0.00 3.36
316 372 8.618677 ACATGACAAAGCTACAAATCATCTATG 58.381 33.333 0.00 0.00 0.00 2.23
380 437 7.201857 GCCCAGTTGCTCAATAAATCTAGAATT 60.202 37.037 0.00 0.00 0.00 2.17
415 472 1.763256 CCCCAGAAATGCCCCATGG 60.763 63.158 4.14 4.14 0.00 3.66
423 493 3.129287 GCACTTATGACACCCCAGAAATG 59.871 47.826 0.00 0.00 0.00 2.32
428 498 0.327924 TGGCACTTATGACACCCCAG 59.672 55.000 0.00 0.00 39.72 4.45
467 537 2.237643 ACCCCGGGCCAAATTTATTTTC 59.762 45.455 17.73 0.00 0.00 2.29
513 583 1.302949 GGCACTGTAGGAATGGCCA 59.697 57.895 8.56 8.56 41.02 5.36
518 588 2.186903 CGCCGGCACTGTAGGAAT 59.813 61.111 28.98 0.00 0.00 3.01
564 634 0.385751 TTCATCTCATCCGAGTCGCC 59.614 55.000 7.12 0.00 40.44 5.54
565 635 1.066303 AGTTCATCTCATCCGAGTCGC 59.934 52.381 7.12 0.00 40.44 5.19
576 646 5.382618 AAATTTCCAGTGCAGTTCATCTC 57.617 39.130 0.00 0.00 0.00 2.75
638 708 3.849911 TCTATTGAGCCGAAGTTCACAG 58.150 45.455 3.32 0.00 32.35 3.66
640 710 3.851098 ACTCTATTGAGCCGAAGTTCAC 58.149 45.455 3.93 0.00 43.85 3.18
655 725 4.861196 TCACTAGTGGCTCTCAACTCTAT 58.139 43.478 22.48 0.00 0.00 1.98
656 726 4.263550 ACTCACTAGTGGCTCTCAACTCTA 60.264 45.833 22.48 0.00 33.57 2.43
657 727 3.088532 CTCACTAGTGGCTCTCAACTCT 58.911 50.000 22.48 0.00 0.00 3.24
658 728 2.823154 ACTCACTAGTGGCTCTCAACTC 59.177 50.000 22.48 0.00 33.57 3.01
659 729 2.883026 ACTCACTAGTGGCTCTCAACT 58.117 47.619 22.48 0.00 33.57 3.16
661 731 4.019231 TCTCTACTCACTAGTGGCTCTCAA 60.019 45.833 22.48 0.46 36.36 3.02
662 732 3.519913 TCTCTACTCACTAGTGGCTCTCA 59.480 47.826 22.48 1.21 36.36 3.27
663 733 4.127171 CTCTCTACTCACTAGTGGCTCTC 58.873 52.174 22.48 0.00 36.36 3.20
668 748 7.502696 AGTATACACTCTCTACTCACTAGTGG 58.497 42.308 22.48 15.10 41.43 4.00
715 795 2.158559 ACTCTGCAAACACACACAACA 58.841 42.857 0.00 0.00 0.00 3.33
763 847 0.636101 AATTTGGGGCAGGGCAGATA 59.364 50.000 0.00 0.00 0.00 1.98
765 849 1.610086 CAATTTGGGGCAGGGCAGA 60.610 57.895 0.00 0.00 0.00 4.26
819 910 8.806177 TGAATGAAATGAAATCACTGAAACTG 57.194 30.769 0.00 0.00 0.00 3.16
821 912 9.853921 GTTTGAATGAAATGAAATCACTGAAAC 57.146 29.630 0.00 0.00 0.00 2.78
843 934 7.615582 TGATGGCTTATCTGAAGTTAGTTTG 57.384 36.000 3.76 0.00 36.71 2.93
861 952 0.968405 TTGCCCACTTCTTTGATGGC 59.032 50.000 0.00 0.00 39.33 4.40
868 959 3.843893 AAAAATGCTTGCCCACTTCTT 57.156 38.095 0.00 0.00 0.00 2.52
874 965 5.304101 TCTCTTTTCTAAAAATGCTTGCCCA 59.696 36.000 0.00 0.00 0.00 5.36
876 967 5.347093 GCTCTCTTTTCTAAAAATGCTTGCC 59.653 40.000 0.00 0.00 0.00 4.52
878 969 7.935338 TTGCTCTCTTTTCTAAAAATGCTTG 57.065 32.000 0.00 0.00 0.00 4.01
880 971 8.530269 CATTTGCTCTCTTTTCTAAAAATGCT 57.470 30.769 0.00 0.00 29.95 3.79
881 972 7.232300 GCATTTGCTCTCTTTTCTAAAAATGC 58.768 34.615 12.34 12.34 46.29 3.56
882 973 7.442657 CGCATTTGCTCTCTTTTCTAAAAATG 58.557 34.615 0.51 0.00 39.32 2.32
884 975 5.402270 GCGCATTTGCTCTCTTTTCTAAAAA 59.598 36.000 0.30 0.00 39.32 1.94
910 1003 5.132816 AGGAGACCCATATTCCCTTAAGTTG 59.867 44.000 0.97 0.00 33.88 3.16
927 1020 0.241213 GCTTTCGCCAAAAGGAGACC 59.759 55.000 7.99 0.00 43.90 3.85
940 1033 1.406539 CTGGGGGAATTGATGCTTTCG 59.593 52.381 0.00 0.00 0.00 3.46
947 1040 4.014273 AGAGACTACTGGGGGAATTGAT 57.986 45.455 0.00 0.00 0.00 2.57
955 1048 5.450688 CGAACTGATTAAGAGACTACTGGGG 60.451 48.000 0.00 0.00 0.00 4.96
1124 1508 5.180117 GCATGTAGTGATGATTATGTGACCC 59.820 44.000 0.00 0.00 0.00 4.46
1141 1525 5.771469 TGTGAACAAAATCTTGGCATGTAG 58.229 37.500 0.00 0.00 36.82 2.74
1165 1549 5.789574 TGGGTGGTAAAGAATTCTGGTAT 57.210 39.130 9.17 0.00 0.00 2.73
1209 1594 7.230849 TCAGTGCAATTCCAAACATAGATTT 57.769 32.000 0.00 0.00 0.00 2.17
1215 1600 3.006110 CACCTCAGTGCAATTCCAAACAT 59.994 43.478 0.00 0.00 37.14 2.71
1313 1699 4.627611 TTACTTTATACGTCGAGCAGCT 57.372 40.909 0.00 0.00 0.00 4.24
1380 1766 7.982354 ACAGAATTAGCAAGTAGTAACATCTCC 59.018 37.037 0.00 0.00 0.00 3.71
1479 1869 1.283793 CTGCACAAACAGAAGGGCG 59.716 57.895 0.00 0.00 40.25 6.13
1598 1997 5.593095 AGTTCTATGCAAGCACATCAATCAT 59.407 36.000 0.00 0.00 0.00 2.45
1627 2026 8.311109 ACAAACTTACCATATCAATCCCAAAAC 58.689 33.333 0.00 0.00 0.00 2.43
1642 2041 1.847737 ACCCAGGTGACAAACTTACCA 59.152 47.619 0.00 0.00 36.94 3.25
1714 2345 4.536489 AGGGGAACTACTGCTATTCAAAGT 59.464 41.667 0.00 0.00 0.00 2.66
1794 2428 8.213679 AGCCAGAGAAATAATCAGCATTAACTA 58.786 33.333 0.00 0.00 0.00 2.24
1818 2455 2.726832 ACAAGACTACCGACTTGAGC 57.273 50.000 12.69 0.00 42.80 4.26
1826 2463 3.678548 GCTAGGAAACAACAAGACTACCG 59.321 47.826 0.00 0.00 0.00 4.02
1839 2476 0.248289 TAGCACACCGGCTAGGAAAC 59.752 55.000 0.00 0.00 43.70 2.78
1870 2507 8.683550 TTTCACATACTATTTACAGTGAGTCG 57.316 34.615 0.00 0.00 37.32 4.18
1892 2529 4.881920 AGTGCAACCATGGTACAAATTTC 58.118 39.130 20.12 7.46 39.81 2.17
1896 2533 3.561143 AGAAGTGCAACCATGGTACAAA 58.439 40.909 20.12 1.18 39.81 2.83
1908 2545 1.150827 CAGCGACATGAGAAGTGCAA 58.849 50.000 0.00 0.00 0.00 4.08
1918 2559 2.224079 AGTTTGTGCTAACAGCGACATG 59.776 45.455 0.00 0.00 46.26 3.21
1975 2616 9.425248 AAATGAAGGGAATCTAAGCATGATTTA 57.575 29.630 0.00 0.00 0.00 1.40
2005 2646 6.609616 ACCTAAAGAAAACCTGTCCAAAATGA 59.390 34.615 0.00 0.00 0.00 2.57
2022 2663 5.885912 GGCCTGAACATCAATAACCTAAAGA 59.114 40.000 0.00 0.00 0.00 2.52
2051 2692 2.042433 TCCCAACAATAACCTCCCCAAG 59.958 50.000 0.00 0.00 0.00 3.61
2166 2808 1.473677 CGCATGAATTCAAGCAAGGGA 59.526 47.619 29.03 0.00 40.24 4.20
2232 2875 8.937884 CATGATGAAATTATGAAAAGTTTGCCA 58.062 29.630 0.00 0.00 42.41 4.92
2572 3215 7.118390 CCTTCTCAAAAGTAACTATGTGGACTG 59.882 40.741 0.00 0.00 0.00 3.51
2583 3226 8.847196 ACAAATAAGGTCCTTCTCAAAAGTAAC 58.153 33.333 7.61 0.00 0.00 2.50
2621 3264 0.238289 GTGCGACCAACTTCCACATG 59.762 55.000 0.00 0.00 0.00 3.21
2683 3326 1.337823 ACAGAAGGGTCATGTGCGTAC 60.338 52.381 0.00 0.00 0.00 3.67
2739 3391 4.517285 TGGGCTTAGAATTCACTGACATC 58.483 43.478 8.44 0.00 0.00 3.06
2766 3421 3.830744 TTCTCCAACCAAAGACTCGAA 57.169 42.857 0.00 0.00 0.00 3.71
2797 3452 1.606668 GAACGACAAGTCCATGGCAAA 59.393 47.619 6.96 0.00 0.00 3.68
2807 3462 2.431057 AGGTGTGAAGAGAACGACAAGT 59.569 45.455 0.00 0.00 0.00 3.16
2831 3486 2.947652 CCGACTACCGATTTCTACCTCA 59.052 50.000 0.00 0.00 41.76 3.86
2858 3519 6.872920 TGCATATGCGTGTCCATATCTATAA 58.127 36.000 22.21 0.00 45.83 0.98
2911 3574 8.643324 ACTATCCTATCACTTCCAAGTATGTTC 58.357 37.037 0.00 0.00 37.08 3.18
2946 3610 0.543749 CTCCAGTTGATCAGGGGTCC 59.456 60.000 9.46 0.00 0.00 4.46
3035 3699 2.738643 CGTCGTACATGCCCATCTTCTT 60.739 50.000 0.00 0.00 0.00 2.52
3038 3702 0.535335 ACGTCGTACATGCCCATCTT 59.465 50.000 0.00 0.00 0.00 2.40
3134 3798 2.825532 ACGGTCTTTAAATGCCAGCAAT 59.174 40.909 0.00 0.00 0.00 3.56
3155 3819 1.750018 CATCGGTCCCATGCTGCAA 60.750 57.895 6.36 0.00 0.00 4.08
3287 3952 3.790288 GCGTGTCGTCTTAGGAATCTAAC 59.210 47.826 0.00 0.00 32.53 2.34
3308 3973 3.821033 AGGGAGTATGAAACAAACAGTGC 59.179 43.478 0.00 0.00 0.00 4.40
3326 3991 5.261216 GACAAGTAATTTTGGATGGAGGGA 58.739 41.667 0.00 0.00 32.32 4.20
3327 3992 4.096382 CGACAAGTAATTTTGGATGGAGGG 59.904 45.833 0.00 0.00 32.32 4.30
3328 3993 4.438744 GCGACAAGTAATTTTGGATGGAGG 60.439 45.833 0.00 0.00 32.32 4.30
3329 3994 4.155826 TGCGACAAGTAATTTTGGATGGAG 59.844 41.667 0.00 0.00 32.32 3.86
3330 3995 4.075682 TGCGACAAGTAATTTTGGATGGA 58.924 39.130 0.00 0.00 32.32 3.41
3331 3996 4.155826 TCTGCGACAAGTAATTTTGGATGG 59.844 41.667 0.00 0.00 32.32 3.51
3332 3997 5.295431 TCTGCGACAAGTAATTTTGGATG 57.705 39.130 0.00 0.00 32.32 3.51
3333 3998 5.957842 TTCTGCGACAAGTAATTTTGGAT 57.042 34.783 0.00 0.00 32.32 3.41
3335 4000 5.345741 CCATTTCTGCGACAAGTAATTTTGG 59.654 40.000 0.00 0.00 32.32 3.28
3336 4001 6.148948 TCCATTTCTGCGACAAGTAATTTTG 58.851 36.000 0.00 0.00 0.00 2.44
3337 4002 6.325919 TCCATTTCTGCGACAAGTAATTTT 57.674 33.333 0.00 0.00 0.00 1.82
3338 4003 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
3339 4004 5.677091 GCATCCATTTCTGCGACAAGTAATT 60.677 40.000 0.00 0.00 0.00 1.40
3340 4005 4.201950 GCATCCATTTCTGCGACAAGTAAT 60.202 41.667 0.00 0.00 0.00 1.89
3341 4006 3.126858 GCATCCATTTCTGCGACAAGTAA 59.873 43.478 0.00 0.00 0.00 2.24
3342 4007 2.677836 GCATCCATTTCTGCGACAAGTA 59.322 45.455 0.00 0.00 0.00 2.24
3343 4008 1.470098 GCATCCATTTCTGCGACAAGT 59.530 47.619 0.00 0.00 0.00 3.16
3344 4009 1.469703 TGCATCCATTTCTGCGACAAG 59.530 47.619 0.00 0.00 41.32 3.16
3345 4010 1.532523 TGCATCCATTTCTGCGACAA 58.467 45.000 0.00 0.00 41.32 3.18
3346 4011 1.672363 GATGCATCCATTTCTGCGACA 59.328 47.619 16.23 0.00 41.32 4.35
3347 4012 1.945394 AGATGCATCCATTTCTGCGAC 59.055 47.619 23.06 0.00 41.32 5.19
3348 4013 2.336945 AGATGCATCCATTTCTGCGA 57.663 45.000 23.06 0.00 41.32 5.10
3349 4014 3.396560 TCTAGATGCATCCATTTCTGCG 58.603 45.455 23.06 0.92 41.32 5.18
3350 4015 4.820716 AGTTCTAGATGCATCCATTTCTGC 59.179 41.667 23.06 6.53 38.87 4.26
3351 4016 8.442632 TTTAGTTCTAGATGCATCCATTTCTG 57.557 34.615 23.06 6.03 0.00 3.02
3352 4017 9.638176 ATTTTAGTTCTAGATGCATCCATTTCT 57.362 29.630 23.06 17.09 0.00 2.52
3355 4020 8.993121 CGTATTTTAGTTCTAGATGCATCCATT 58.007 33.333 23.06 7.62 0.00 3.16
3356 4021 8.150945 ACGTATTTTAGTTCTAGATGCATCCAT 58.849 33.333 23.06 8.39 0.00 3.41
3357 4022 7.497595 ACGTATTTTAGTTCTAGATGCATCCA 58.502 34.615 23.06 9.05 0.00 3.41
3358 4023 7.868415 AGACGTATTTTAGTTCTAGATGCATCC 59.132 37.037 23.06 7.42 0.00 3.51
3359 4024 8.804688 AGACGTATTTTAGTTCTAGATGCATC 57.195 34.615 19.37 19.37 0.00 3.91
3360 4025 9.900710 CTAGACGTATTTTAGTTCTAGATGCAT 57.099 33.333 0.00 0.00 0.00 3.96
3361 4026 9.117183 TCTAGACGTATTTTAGTTCTAGATGCA 57.883 33.333 0.00 0.00 32.48 3.96
3374 4039 9.490379 GGAAATGGATGTATCTAGACGTATTTT 57.510 33.333 0.00 0.00 0.00 1.82
3375 4040 7.813148 CGGAAATGGATGTATCTAGACGTATTT 59.187 37.037 0.00 0.00 0.00 1.40
3376 4041 7.039923 ACGGAAATGGATGTATCTAGACGTATT 60.040 37.037 0.00 0.00 0.00 1.89
3377 4042 6.433404 ACGGAAATGGATGTATCTAGACGTAT 59.567 38.462 0.00 0.00 0.00 3.06
3378 4043 5.766670 ACGGAAATGGATGTATCTAGACGTA 59.233 40.000 0.00 0.00 0.00 3.57
3379 4044 4.583489 ACGGAAATGGATGTATCTAGACGT 59.417 41.667 0.00 0.00 0.00 4.34
3380 4045 4.917998 CACGGAAATGGATGTATCTAGACG 59.082 45.833 0.00 0.00 0.00 4.18
3381 4046 5.230942 CCACGGAAATGGATGTATCTAGAC 58.769 45.833 0.00 0.00 43.02 2.59
3382 4047 4.262463 GCCACGGAAATGGATGTATCTAGA 60.262 45.833 0.00 0.00 43.02 2.43
3383 4048 3.997021 GCCACGGAAATGGATGTATCTAG 59.003 47.826 0.00 0.00 43.02 2.43
3384 4049 3.389656 TGCCACGGAAATGGATGTATCTA 59.610 43.478 0.00 0.00 43.02 1.98
3385 4050 2.172505 TGCCACGGAAATGGATGTATCT 59.827 45.455 0.00 0.00 43.02 1.98
3386 4051 2.571212 TGCCACGGAAATGGATGTATC 58.429 47.619 0.00 0.00 43.02 2.24
3387 4052 2.727123 TGCCACGGAAATGGATGTAT 57.273 45.000 0.00 0.00 43.02 2.29
3388 4053 2.290641 ACTTGCCACGGAAATGGATGTA 60.291 45.455 0.00 0.00 43.02 2.29
3389 4054 1.176527 CTTGCCACGGAAATGGATGT 58.823 50.000 0.00 0.00 43.02 3.06
3390 4055 1.176527 ACTTGCCACGGAAATGGATG 58.823 50.000 0.00 0.00 43.02 3.51
3391 4056 2.799126 TACTTGCCACGGAAATGGAT 57.201 45.000 0.00 0.00 43.02 3.41
3392 4057 2.570415 TTACTTGCCACGGAAATGGA 57.430 45.000 0.00 0.00 43.02 3.41
3393 4058 3.428862 GGAATTACTTGCCACGGAAATGG 60.429 47.826 0.00 0.00 43.26 3.16
3394 4059 3.192422 TGGAATTACTTGCCACGGAAATG 59.808 43.478 0.00 0.00 0.00 2.32
3395 4060 3.426615 TGGAATTACTTGCCACGGAAAT 58.573 40.909 0.00 0.00 0.00 2.17
3396 4061 2.817258 CTGGAATTACTTGCCACGGAAA 59.183 45.455 0.00 0.00 0.00 3.13
3397 4062 2.039216 TCTGGAATTACTTGCCACGGAA 59.961 45.455 0.00 0.00 0.00 4.30
3398 4063 1.626321 TCTGGAATTACTTGCCACGGA 59.374 47.619 0.00 0.00 0.00 4.69
3399 4064 1.737793 GTCTGGAATTACTTGCCACGG 59.262 52.381 0.00 0.00 0.00 4.94
3400 4065 1.737793 GGTCTGGAATTACTTGCCACG 59.262 52.381 0.00 0.00 0.00 4.94
3401 4066 1.737793 CGGTCTGGAATTACTTGCCAC 59.262 52.381 0.00 0.00 0.00 5.01
3402 4067 1.626321 TCGGTCTGGAATTACTTGCCA 59.374 47.619 0.00 0.00 0.00 4.92
3403 4068 2.280628 CTCGGTCTGGAATTACTTGCC 58.719 52.381 0.00 0.00 0.00 4.52
3404 4069 2.280628 CCTCGGTCTGGAATTACTTGC 58.719 52.381 0.00 0.00 0.00 4.01
3405 4070 2.500098 TCCCTCGGTCTGGAATTACTTG 59.500 50.000 0.00 0.00 0.00 3.16
3406 4071 2.500504 GTCCCTCGGTCTGGAATTACTT 59.499 50.000 0.00 0.00 31.03 2.24
3407 4072 2.108970 GTCCCTCGGTCTGGAATTACT 58.891 52.381 0.00 0.00 31.03 2.24
3408 4073 2.108970 AGTCCCTCGGTCTGGAATTAC 58.891 52.381 0.00 0.00 31.03 1.89
3409 4074 2.544844 AGTCCCTCGGTCTGGAATTA 57.455 50.000 0.00 0.00 31.03 1.40
3410 4075 2.108970 GTAGTCCCTCGGTCTGGAATT 58.891 52.381 0.00 0.00 30.47 2.17
3411 4076 1.006758 TGTAGTCCCTCGGTCTGGAAT 59.993 52.381 0.00 0.00 32.91 3.01
3412 4077 0.406750 TGTAGTCCCTCGGTCTGGAA 59.593 55.000 0.00 0.00 31.03 3.53
3413 4078 0.629596 ATGTAGTCCCTCGGTCTGGA 59.370 55.000 0.00 0.00 0.00 3.86
3414 4079 0.747255 CATGTAGTCCCTCGGTCTGG 59.253 60.000 0.00 0.00 0.00 3.86
3415 4080 0.103208 GCATGTAGTCCCTCGGTCTG 59.897 60.000 0.00 0.00 0.00 3.51
3416 4081 1.384989 CGCATGTAGTCCCTCGGTCT 61.385 60.000 0.00 0.00 0.00 3.85
3417 4082 1.065928 CGCATGTAGTCCCTCGGTC 59.934 63.158 0.00 0.00 0.00 4.79
3418 4083 0.394762 TACGCATGTAGTCCCTCGGT 60.395 55.000 0.00 0.00 0.00 4.69
3419 4084 0.959553 ATACGCATGTAGTCCCTCGG 59.040 55.000 0.00 0.00 33.17 4.63
3420 4085 2.795175 AATACGCATGTAGTCCCTCG 57.205 50.000 0.00 0.00 33.17 4.63
3421 4086 5.386958 TCATAATACGCATGTAGTCCCTC 57.613 43.478 0.00 0.00 33.17 4.30
3422 4087 6.166279 CAATCATAATACGCATGTAGTCCCT 58.834 40.000 0.00 0.00 33.17 4.20
3423 4088 5.351465 CCAATCATAATACGCATGTAGTCCC 59.649 44.000 0.00 0.00 33.17 4.46
3424 4089 6.163476 TCCAATCATAATACGCATGTAGTCC 58.837 40.000 0.00 0.00 33.17 3.85
3425 4090 7.652300 TTCCAATCATAATACGCATGTAGTC 57.348 36.000 0.00 0.00 33.17 2.59
3426 4091 8.621532 ATTTCCAATCATAATACGCATGTAGT 57.378 30.769 0.00 0.00 33.17 2.73
3427 4092 8.720562 TGATTTCCAATCATAATACGCATGTAG 58.279 33.333 0.00 0.00 33.17 2.74
3428 4093 8.614469 TGATTTCCAATCATAATACGCATGTA 57.386 30.769 0.00 0.00 34.45 2.29
3429 4094 7.509141 TGATTTCCAATCATAATACGCATGT 57.491 32.000 0.00 0.00 0.00 3.21
3443 4108 1.106285 GCCCGAAGCTGATTTCCAAT 58.894 50.000 0.00 0.00 38.99 3.16
3507 4172 1.986631 TCCCAAAGACCCAAACCGATA 59.013 47.619 0.00 0.00 0.00 2.92
3508 4173 0.774908 TCCCAAAGACCCAAACCGAT 59.225 50.000 0.00 0.00 0.00 4.18
3509 4174 0.109723 CTCCCAAAGACCCAAACCGA 59.890 55.000 0.00 0.00 0.00 4.69
3510 4175 0.893727 CCTCCCAAAGACCCAAACCG 60.894 60.000 0.00 0.00 0.00 4.44
3511 4176 0.187606 ACCTCCCAAAGACCCAAACC 59.812 55.000 0.00 0.00 0.00 3.27
3513 4178 1.529744 AGACCTCCCAAAGACCCAAA 58.470 50.000 0.00 0.00 0.00 3.28
3514 4179 1.144913 CAAGACCTCCCAAAGACCCAA 59.855 52.381 0.00 0.00 0.00 4.12
3515 4180 0.771127 CAAGACCTCCCAAAGACCCA 59.229 55.000 0.00 0.00 0.00 4.51
3516 4181 0.038310 CCAAGACCTCCCAAAGACCC 59.962 60.000 0.00 0.00 0.00 4.46
3517 4182 0.038310 CCCAAGACCTCCCAAAGACC 59.962 60.000 0.00 0.00 0.00 3.85
3518 4183 0.771755 ACCCAAGACCTCCCAAAGAC 59.228 55.000 0.00 0.00 0.00 3.01
3519 4184 1.529744 AACCCAAGACCTCCCAAAGA 58.470 50.000 0.00 0.00 0.00 2.52
3520 4185 1.963515 CAAACCCAAGACCTCCCAAAG 59.036 52.381 0.00 0.00 0.00 2.77
3581 4247 1.896660 GCGGCACCTGGAAGTCAAA 60.897 57.895 0.00 0.00 0.00 2.69
3591 4261 1.899142 ACCAATTAATTTGCGGCACCT 59.101 42.857 0.05 0.00 33.73 4.00
3598 4268 7.126726 TGCACATTGTTACCAATTAATTTGC 57.873 32.000 0.00 2.88 39.28 3.68
3655 4325 4.320788 GCTATGCATATCTTTTGGCAGGTC 60.321 45.833 6.92 0.00 39.95 3.85
3770 4441 3.317993 ACTGAATCCCAAACGGAAACTTG 59.682 43.478 0.00 0.00 46.47 3.16
3773 4444 5.441709 TTAACTGAATCCCAAACGGAAAC 57.558 39.130 0.00 0.00 46.47 2.78
3779 4450 7.713073 TCAACCATTTTTAACTGAATCCCAAAC 59.287 33.333 0.00 0.00 0.00 2.93
3787 4458 6.474102 GCGAAAGTCAACCATTTTTAACTGAA 59.526 34.615 0.00 0.00 0.00 3.02
3801 4472 1.533731 TGGATTTCGGCGAAAGTCAAC 59.466 47.619 34.33 22.90 34.92 3.18
3839 4637 7.093509 GCCACCCCTGATCTTTTCTTTATTTTA 60.094 37.037 0.00 0.00 0.00 1.52
3848 4646 1.032114 CGGCCACCCCTGATCTTTTC 61.032 60.000 2.24 0.00 0.00 2.29
3857 4665 1.618447 ATTCTTACCGGCCACCCCT 60.618 57.895 0.00 0.00 0.00 4.79
3914 4722 8.424274 AAAAGAACAATGTTTGGAACTCAATC 57.576 30.769 0.00 0.00 34.98 2.67
3992 4800 7.323656 GCGACCTAACATTCATTGCAATAATAC 59.676 37.037 12.53 0.00 0.00 1.89
4013 4828 3.921021 CGTATGATATTTCTGGAGCGACC 59.079 47.826 0.00 0.00 39.54 4.79
4082 4897 1.613630 AGAAGCCCCGACACCATCT 60.614 57.895 0.00 0.00 0.00 2.90
4121 4936 3.052036 GTTTACACTTCTTCGTACGGCA 58.948 45.455 16.52 1.37 0.00 5.69
4138 4953 2.403378 GCATCCGCCGCCTTGTTTA 61.403 57.895 0.00 0.00 0.00 2.01
4206 5021 2.234661 CTCTGTGTAGGAACTCATGCCA 59.765 50.000 0.00 0.00 41.75 4.92
4336 5207 2.559668 CTGCAATGGTGTCTTCCATGTT 59.440 45.455 0.00 0.00 46.14 2.71
4348 5219 1.033746 CCTTCGATGGCTGCAATGGT 61.034 55.000 4.15 0.00 0.00 3.55
4506 5381 5.010213 CCTCCTAGCTAGTTACCTTTGCTAG 59.990 48.000 19.31 11.87 42.69 3.42
4510 5385 6.980416 ATACCTCCTAGCTAGTTACCTTTG 57.020 41.667 19.31 1.76 0.00 2.77
4519 5394 8.575589 CATCTTGCATATATACCTCCTAGCTAG 58.424 40.741 14.20 14.20 0.00 3.42
4520 5395 7.014711 GCATCTTGCATATATACCTCCTAGCTA 59.985 40.741 0.00 0.00 44.26 3.32
4521 5396 6.183360 GCATCTTGCATATATACCTCCTAGCT 60.183 42.308 0.00 0.00 44.26 3.32
4522 5397 5.988561 GCATCTTGCATATATACCTCCTAGC 59.011 44.000 0.00 0.00 44.26 3.42
4558 5437 1.108132 CCGCTAGAGACCCAGGTACC 61.108 65.000 2.73 2.73 0.00 3.34
4767 5646 5.721876 CACAAGGAAAGTTTGTGTACGTA 57.278 39.130 9.34 0.00 46.37 3.57
4768 5647 4.609691 CACAAGGAAAGTTTGTGTACGT 57.390 40.909 9.34 0.00 46.37 3.57
4818 5697 0.623324 ACCCAGGCCAGGTATAAGCA 60.623 55.000 15.53 0.00 35.24 3.91
4860 5739 3.129287 GCTATGCACACAGCCATAACTTT 59.871 43.478 5.66 0.00 44.83 2.66
4862 5741 2.292267 GCTATGCACACAGCCATAACT 58.708 47.619 5.66 0.00 44.83 2.24
4863 5742 2.763249 GCTATGCACACAGCCATAAC 57.237 50.000 5.66 0.00 44.83 1.89
4895 5774 8.899771 AGTTAGAATTTGTTTTCCGAAAAGAGA 58.100 29.630 6.54 1.73 0.00 3.10
4929 5809 1.607612 GCCCCACTTGCCTAGCTTA 59.392 57.895 0.00 0.00 0.00 3.09
4969 5866 3.449377 TGTTCTCCGGTTGCTGATGTATA 59.551 43.478 0.00 0.00 0.00 1.47
4983 5880 7.905493 GCTTAATTAACTTCTGATTGTTCTCCG 59.095 37.037 0.00 0.00 0.00 4.63
5019 5916 5.112686 GCTCCATGACTCTACTTTTGGTAG 58.887 45.833 0.00 0.00 46.79 3.18
5029 5926 3.643320 CCATGTTAGGCTCCATGACTCTA 59.357 47.826 21.99 0.00 40.70 2.43
5122 6019 1.228228 CCACCTGGCCACAGCATAT 59.772 57.895 0.00 0.00 43.53 1.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.