Multiple sequence alignment - TraesCS5A01G409800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G409800 chr5A 100.000 3905 0 0 1 3905 599225482 599221578 0.000000e+00 7212.0
1 TraesCS5A01G409800 chr5A 90.558 1451 122 5 1664 3107 602003643 602005085 0.000000e+00 1906.0
2 TraesCS5A01G409800 chr5A 88.000 175 13 2 3214 3384 602005092 602005262 2.380000e-47 200.0
3 TraesCS5A01G409800 chr5A 97.297 37 1 0 3827 3863 652059404 652059440 3.260000e-06 63.9
4 TraesCS5A01G409800 chr5B 94.394 2087 66 11 1390 3461 588683673 588681623 0.000000e+00 3158.0
5 TraesCS5A01G409800 chr5B 90.497 1389 116 7 1736 3113 591653549 591654932 0.000000e+00 1820.0
6 TraesCS5A01G409800 chr5B 91.850 1092 57 15 14 1105 588684738 588683679 0.000000e+00 1495.0
7 TraesCS5A01G409800 chr5B 98.276 290 3 2 1102 1391 473663160 473662873 1.250000e-139 507.0
8 TraesCS5A01G409800 chr5B 86.996 223 8 9 3214 3436 591654933 591655134 8.440000e-57 231.0
9 TraesCS5A01G409800 chr5B 90.278 72 6 1 3686 3757 588681583 588681513 4.150000e-15 93.5
10 TraesCS5A01G409800 chr5D 96.269 1742 54 1 1390 3131 480481227 480479497 0.000000e+00 2846.0
11 TraesCS5A01G409800 chr5D 90.391 1457 116 10 1664 3107 482298740 482300185 0.000000e+00 1893.0
12 TraesCS5A01G409800 chr5D 92.772 1093 46 18 14 1105 480482293 480481233 0.000000e+00 1550.0
13 TraesCS5A01G409800 chr5D 86.768 461 28 9 3131 3585 480479524 480479091 2.110000e-132 483.0
14 TraesCS5A01G409800 chr5D 85.268 224 15 10 3214 3437 482300192 482300397 8.500000e-52 215.0
15 TraesCS5A01G409800 chr5D 90.000 90 2 4 3496 3585 482300490 482300572 4.130000e-20 110.0
16 TraesCS5A01G409800 chr5D 89.362 47 0 2 3770 3816 467421321 467421280 2.000000e-03 54.7
17 TraesCS5A01G409800 chr5D 100.000 28 0 0 3791 3818 527187665 527187692 7.000000e-03 52.8
18 TraesCS5A01G409800 chr4B 79.304 1179 221 21 1749 2915 538999089 538997922 0.000000e+00 804.0
19 TraesCS5A01G409800 chr4B 98.983 295 1 1 1097 1391 78822189 78822481 9.610000e-146 527.0
20 TraesCS5A01G409800 chr4D 78.885 1184 217 26 1749 2915 437028936 437027769 0.000000e+00 771.0
21 TraesCS5A01G409800 chr4D 94.286 35 2 0 3788 3822 508423870 508423904 2.000000e-03 54.7
22 TraesCS5A01G409800 chr4A 78.360 1183 218 26 1749 2915 31414055 31415215 0.000000e+00 732.0
23 TraesCS5A01G409800 chr4A 97.288 295 6 2 1097 1391 677309771 677309479 2.100000e-137 499.0
24 TraesCS5A01G409800 chrUn 99.322 295 1 1 1097 1391 404958224 404958517 2.070000e-147 532.0
25 TraesCS5A01G409800 chrUn 98.305 295 3 1 1097 1391 53261649 53261357 2.080000e-142 516.0
26 TraesCS5A01G409800 chr3B 98.644 295 2 1 1097 1391 201506566 201506858 4.470000e-144 521.0
27 TraesCS5A01G409800 chr2D 97.627 295 5 1 1097 1391 334225910 334226202 4.500000e-139 505.0
28 TraesCS5A01G409800 chr2D 88.679 53 1 2 3770 3822 98711732 98711685 4.210000e-05 60.2
29 TraesCS5A01G409800 chr2A 97.627 295 6 1 1097 1391 335826267 335826560 4.500000e-139 505.0
30 TraesCS5A01G409800 chr2A 100.000 34 0 0 3789 3822 185729119 185729152 3.260000e-06 63.9
31 TraesCS5A01G409800 chr2A 100.000 29 0 0 3786 3814 71661366 71661394 2.000000e-03 54.7
32 TraesCS5A01G409800 chr1A 97.288 295 7 1 1097 1391 256026179 256025886 2.100000e-137 499.0
33 TraesCS5A01G409800 chr7A 100.000 36 0 0 3771 3806 736516287 736516322 2.520000e-07 67.6
34 TraesCS5A01G409800 chr7A 95.000 40 2 0 3827 3866 157459199 157459160 3.260000e-06 63.9
35 TraesCS5A01G409800 chr7B 100.000 35 0 0 3829 3863 436753298 436753332 9.060000e-07 65.8
36 TraesCS5A01G409800 chr3A 89.091 55 1 2 3766 3820 522272634 522272585 3.260000e-06 63.9
37 TraesCS5A01G409800 chr3D 97.059 34 0 1 3789 3822 27668397 27668429 5.450000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G409800 chr5A 599221578 599225482 3904 True 7212.000000 7212 100.000000 1 3905 1 chr5A.!!$R1 3904
1 TraesCS5A01G409800 chr5A 602003643 602005262 1619 False 1053.000000 1906 89.279000 1664 3384 2 chr5A.!!$F2 1720
2 TraesCS5A01G409800 chr5B 588681513 588684738 3225 True 1582.166667 3158 92.174000 14 3757 3 chr5B.!!$R2 3743
3 TraesCS5A01G409800 chr5B 591653549 591655134 1585 False 1025.500000 1820 88.746500 1736 3436 2 chr5B.!!$F1 1700
4 TraesCS5A01G409800 chr5D 480479091 480482293 3202 True 1626.333333 2846 91.936333 14 3585 3 chr5D.!!$R2 3571
5 TraesCS5A01G409800 chr5D 482298740 482300572 1832 False 739.333333 1893 88.553000 1664 3585 3 chr5D.!!$F2 1921
6 TraesCS5A01G409800 chr4B 538997922 538999089 1167 True 804.000000 804 79.304000 1749 2915 1 chr4B.!!$R1 1166
7 TraesCS5A01G409800 chr4D 437027769 437028936 1167 True 771.000000 771 78.885000 1749 2915 1 chr4D.!!$R1 1166
8 TraesCS5A01G409800 chr4A 31414055 31415215 1160 False 732.000000 732 78.360000 1749 2915 1 chr4A.!!$F1 1166

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
378 379 0.178953 AGCCTGAAGCCACCAATGTT 60.179 50.000 0.00 0.0 45.47 2.71 F
408 409 0.320374 CGGCGGGGTGTATACATGAT 59.680 55.000 9.18 0.0 0.00 2.45 F
893 895 1.072331 TCCTTCCTTGGCTTCTGTGAC 59.928 52.381 0.00 0.0 0.00 3.67 F
1099 1101 1.534729 AGCAGAAAATGGACGGTTCC 58.465 50.000 0.00 0.0 43.19 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1777 1779 0.033504 TGCTTCAAGTCTCCCGTGTC 59.966 55.0 0.00 0.0 0.00 3.67 R
2330 2338 0.393537 AACCTCATGGCTAGCAGCAC 60.394 55.0 18.24 0.0 44.75 4.40 R
2364 2372 1.132500 CCTCCCCAGGTCTTATGTCC 58.868 60.0 0.00 0.0 34.60 4.02 R
3056 3089 0.514691 CTGAACCGACAAGCAGAAGC 59.485 55.0 0.00 0.0 42.56 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 3.118075 TGGTTGCTATTGGCTATGCTGTA 60.118 43.478 0.00 0.00 42.39 2.74
54 55 3.499918 GGTTGCTATTGGCTATGCTGTAG 59.500 47.826 0.00 0.00 42.39 2.74
84 85 3.073274 AGACAACTAAAGTGGGGATGC 57.927 47.619 0.00 0.00 0.00 3.91
89 90 4.653801 ACAACTAAAGTGGGGATGCTTTTT 59.346 37.500 0.00 0.00 0.00 1.94
112 113 4.893424 TTTCTTTCTTTCTGGAACACGG 57.107 40.909 0.00 0.00 0.00 4.94
121 122 2.331451 GGAACACGGCTGCAACAC 59.669 61.111 0.50 0.00 0.00 3.32
256 257 6.868339 CCTAAAAGCAAACTGGGAATAAAGTG 59.132 38.462 0.00 0.00 0.00 3.16
273 274 3.356529 AGTGGAGCCTAAATTGACCAG 57.643 47.619 0.00 0.00 0.00 4.00
363 364 1.457346 GCAGACTTATGCACAAGCCT 58.543 50.000 4.21 0.00 45.77 4.58
364 365 1.131883 GCAGACTTATGCACAAGCCTG 59.868 52.381 15.84 15.84 45.77 4.85
373 374 1.529010 CACAAGCCTGAAGCCACCA 60.529 57.895 0.00 0.00 45.47 4.17
378 379 0.178953 AGCCTGAAGCCACCAATGTT 60.179 50.000 0.00 0.00 45.47 2.71
388 389 0.616371 CACCAATGTTCGGTAGGGGA 59.384 55.000 0.00 0.00 34.02 4.81
391 392 0.461339 CAATGTTCGGTAGGGGACGG 60.461 60.000 0.00 0.00 0.00 4.79
402 403 2.839162 GGGACGGCGGGGTGTATA 60.839 66.667 13.24 0.00 0.00 1.47
403 404 2.418777 GGACGGCGGGGTGTATAC 59.581 66.667 13.24 0.00 0.00 1.47
404 405 2.425569 GGACGGCGGGGTGTATACA 61.426 63.158 13.24 0.08 0.00 2.29
405 406 1.744014 GACGGCGGGGTGTATACAT 59.256 57.895 13.24 0.00 0.00 2.29
406 407 0.599204 GACGGCGGGGTGTATACATG 60.599 60.000 13.24 1.27 0.00 3.21
407 408 1.044231 ACGGCGGGGTGTATACATGA 61.044 55.000 13.24 0.00 0.00 3.07
408 409 0.320374 CGGCGGGGTGTATACATGAT 59.680 55.000 9.18 0.00 0.00 2.45
431 432 2.442236 ATGGTGGAACTATGGCCTTG 57.558 50.000 3.32 0.00 36.33 3.61
542 544 7.781548 TTCCTTTATCTAATAACCTGCGTTC 57.218 36.000 0.00 0.00 33.17 3.95
565 567 4.614284 CAGTCTGTTTGATTCGCAATTGTC 59.386 41.667 7.40 0.00 36.15 3.18
618 620 3.831333 TGGCAAGAAAGCATATGGTGAAA 59.169 39.130 8.44 0.00 35.83 2.69
632 634 7.433425 GCATATGGTGAAATTGCTTCTTCTTAC 59.567 37.037 4.56 0.00 34.86 2.34
708 710 8.785329 ACACTGTTTGGTCAACAATTAAATTT 57.215 26.923 0.00 0.00 45.11 1.82
766 768 7.613585 TGAACATATGGTCTTCATTGCATTTT 58.386 30.769 21.11 0.00 37.30 1.82
841 843 6.560253 ATTGATGTGAGTTCAGGTGTTAAC 57.440 37.500 0.00 0.00 0.00 2.01
853 855 8.695456 AGTTCAGGTGTTAACTTCAAAATTGAT 58.305 29.630 7.22 0.00 37.00 2.57
884 886 2.223900 GCTTATGCATTCCTTCCTTGGC 60.224 50.000 3.54 0.00 39.41 4.52
893 895 1.072331 TCCTTCCTTGGCTTCTGTGAC 59.928 52.381 0.00 0.00 0.00 3.67
902 904 2.158623 TGGCTTCTGTGACTTTGATGGT 60.159 45.455 0.00 0.00 0.00 3.55
903 905 2.227388 GGCTTCTGTGACTTTGATGGTG 59.773 50.000 0.00 0.00 0.00 4.17
904 906 2.880890 GCTTCTGTGACTTTGATGGTGT 59.119 45.455 0.00 0.00 0.00 4.16
905 907 3.304257 GCTTCTGTGACTTTGATGGTGTG 60.304 47.826 0.00 0.00 0.00 3.82
906 908 2.221169 TCTGTGACTTTGATGGTGTGC 58.779 47.619 0.00 0.00 0.00 4.57
907 909 1.948834 CTGTGACTTTGATGGTGTGCA 59.051 47.619 0.00 0.00 0.00 4.57
908 910 1.948834 TGTGACTTTGATGGTGTGCAG 59.051 47.619 0.00 0.00 0.00 4.41
909 911 1.949525 GTGACTTTGATGGTGTGCAGT 59.050 47.619 0.00 0.00 0.00 4.40
910 912 2.358898 GTGACTTTGATGGTGTGCAGTT 59.641 45.455 0.00 0.00 0.00 3.16
911 913 2.358582 TGACTTTGATGGTGTGCAGTTG 59.641 45.455 0.00 0.00 0.00 3.16
912 914 2.618241 GACTTTGATGGTGTGCAGTTGA 59.382 45.455 0.00 0.00 0.00 3.18
919 921 2.358957 TGGTGTGCAGTTGATGATAGC 58.641 47.619 0.00 0.00 0.00 2.97
1099 1101 1.534729 AGCAGAAAATGGACGGTTCC 58.465 50.000 0.00 0.00 43.19 3.62
1138 1140 9.868160 ATCAGTTAAAATAAGAAGGAATAGGGG 57.132 33.333 0.00 0.00 0.00 4.79
1139 1141 9.064602 TCAGTTAAAATAAGAAGGAATAGGGGA 57.935 33.333 0.00 0.00 0.00 4.81
1140 1142 9.695155 CAGTTAAAATAAGAAGGAATAGGGGAA 57.305 33.333 0.00 0.00 0.00 3.97
1146 1148 9.740710 AAATAAGAAGGAATAGGGGAATATTCG 57.259 33.333 9.32 0.00 41.24 3.34
1147 1149 8.680820 ATAAGAAGGAATAGGGGAATATTCGA 57.319 34.615 9.32 0.00 41.24 3.71
1148 1150 7.575499 AAGAAGGAATAGGGGAATATTCGAT 57.425 36.000 9.32 0.78 41.24 3.59
1149 1151 7.189079 AGAAGGAATAGGGGAATATTCGATC 57.811 40.000 9.32 2.09 41.24 3.69
1150 1152 5.599999 AGGAATAGGGGAATATTCGATCG 57.400 43.478 9.36 9.36 41.24 3.69
1151 1153 5.024118 AGGAATAGGGGAATATTCGATCGT 58.976 41.667 15.94 0.00 41.24 3.73
1152 1154 5.484290 AGGAATAGGGGAATATTCGATCGTT 59.516 40.000 15.94 6.78 41.24 3.85
1153 1155 5.811100 GGAATAGGGGAATATTCGATCGTTC 59.189 44.000 15.94 11.08 41.24 3.95
1154 1156 5.995565 ATAGGGGAATATTCGATCGTTCA 57.004 39.130 15.94 0.68 0.00 3.18
1155 1157 3.991367 AGGGGAATATTCGATCGTTCAC 58.009 45.455 15.94 12.15 0.00 3.18
1156 1158 3.641906 AGGGGAATATTCGATCGTTCACT 59.358 43.478 15.94 10.16 0.00 3.41
1157 1159 3.988517 GGGGAATATTCGATCGTTCACTC 59.011 47.826 15.94 7.73 0.00 3.51
1158 1160 3.988517 GGGAATATTCGATCGTTCACTCC 59.011 47.826 15.94 15.55 0.00 3.85
1159 1161 4.500887 GGGAATATTCGATCGTTCACTCCA 60.501 45.833 15.94 0.00 0.00 3.86
1160 1162 5.047847 GGAATATTCGATCGTTCACTCCAA 58.952 41.667 15.94 0.00 0.00 3.53
1161 1163 5.522460 GGAATATTCGATCGTTCACTCCAAA 59.478 40.000 15.94 0.00 0.00 3.28
1162 1164 6.036735 GGAATATTCGATCGTTCACTCCAAAA 59.963 38.462 15.94 0.00 0.00 2.44
1163 1165 6.978343 ATATTCGATCGTTCACTCCAAAAA 57.022 33.333 15.94 0.00 0.00 1.94
1164 1166 4.725556 TTCGATCGTTCACTCCAAAAAG 57.274 40.909 15.94 0.00 0.00 2.27
1165 1167 3.985008 TCGATCGTTCACTCCAAAAAGA 58.015 40.909 15.94 0.00 0.00 2.52
1166 1168 3.987868 TCGATCGTTCACTCCAAAAAGAG 59.012 43.478 15.94 0.00 39.91 2.85
1167 1169 3.123621 CGATCGTTCACTCCAAAAAGAGG 59.876 47.826 7.03 0.00 38.26 3.69
1168 1170 2.846193 TCGTTCACTCCAAAAAGAGGG 58.154 47.619 0.00 0.00 38.75 4.30
1169 1171 2.171870 TCGTTCACTCCAAAAAGAGGGT 59.828 45.455 0.00 0.00 38.51 4.34
1170 1172 2.548480 CGTTCACTCCAAAAAGAGGGTC 59.452 50.000 0.00 0.00 38.51 4.46
1171 1173 2.885266 GTTCACTCCAAAAAGAGGGTCC 59.115 50.000 0.00 0.00 38.51 4.46
1172 1174 2.418669 TCACTCCAAAAAGAGGGTCCT 58.581 47.619 0.00 0.00 38.51 3.85
1173 1175 3.593942 TCACTCCAAAAAGAGGGTCCTA 58.406 45.455 0.00 0.00 38.51 2.94
1174 1176 4.175962 TCACTCCAAAAAGAGGGTCCTAT 58.824 43.478 0.00 0.00 38.51 2.57
1175 1177 4.601857 TCACTCCAAAAAGAGGGTCCTATT 59.398 41.667 0.00 0.00 38.51 1.73
1176 1178 4.702131 CACTCCAAAAAGAGGGTCCTATTG 59.298 45.833 0.00 0.00 38.26 1.90
1177 1179 4.601857 ACTCCAAAAAGAGGGTCCTATTGA 59.398 41.667 0.00 0.00 38.26 2.57
1178 1180 5.074515 ACTCCAAAAAGAGGGTCCTATTGAA 59.925 40.000 0.00 0.00 38.26 2.69
1179 1181 5.959512 TCCAAAAAGAGGGTCCTATTGAAA 58.040 37.500 0.00 0.00 0.00 2.69
1180 1182 6.377912 TCCAAAAAGAGGGTCCTATTGAAAA 58.622 36.000 0.00 0.00 0.00 2.29
1181 1183 6.841755 TCCAAAAAGAGGGTCCTATTGAAAAA 59.158 34.615 0.00 0.00 0.00 1.94
1182 1184 7.015195 TCCAAAAAGAGGGTCCTATTGAAAAAG 59.985 37.037 0.00 0.00 0.00 2.27
1183 1185 7.015195 CCAAAAAGAGGGTCCTATTGAAAAAGA 59.985 37.037 0.00 0.00 0.00 2.52
1184 1186 8.421002 CAAAAAGAGGGTCCTATTGAAAAAGAA 58.579 33.333 0.00 0.00 0.00 2.52
1185 1187 8.547481 AAAAGAGGGTCCTATTGAAAAAGAAA 57.453 30.769 0.00 0.00 0.00 2.52
1186 1188 8.727100 AAAGAGGGTCCTATTGAAAAAGAAAT 57.273 30.769 0.00 0.00 0.00 2.17
1187 1189 8.727100 AAGAGGGTCCTATTGAAAAAGAAATT 57.273 30.769 0.00 0.00 0.00 1.82
1188 1190 9.822727 AAGAGGGTCCTATTGAAAAAGAAATTA 57.177 29.630 0.00 0.00 0.00 1.40
1189 1191 9.997172 AGAGGGTCCTATTGAAAAAGAAATTAT 57.003 29.630 0.00 0.00 0.00 1.28
1191 1193 9.201989 AGGGTCCTATTGAAAAAGAAATTATCC 57.798 33.333 0.00 0.00 0.00 2.59
1192 1194 8.977412 GGGTCCTATTGAAAAAGAAATTATCCA 58.023 33.333 0.00 0.00 0.00 3.41
1298 1300 7.789202 TTTTTCATTCAATGGGGTTAGATGA 57.211 32.000 0.00 0.00 0.00 2.92
1299 1301 7.976414 TTTTCATTCAATGGGGTTAGATGAT 57.024 32.000 0.00 0.00 0.00 2.45
1300 1302 7.587037 TTTCATTCAATGGGGTTAGATGATC 57.413 36.000 0.00 0.00 0.00 2.92
1301 1303 6.520021 TCATTCAATGGGGTTAGATGATCT 57.480 37.500 0.00 0.00 0.00 2.75
1302 1304 7.631510 TCATTCAATGGGGTTAGATGATCTA 57.368 36.000 0.00 0.00 0.00 1.98
1303 1305 7.683578 TCATTCAATGGGGTTAGATGATCTAG 58.316 38.462 2.03 0.00 29.56 2.43
1304 1306 7.293299 TCATTCAATGGGGTTAGATGATCTAGT 59.707 37.037 2.03 0.00 29.56 2.57
1305 1307 7.451731 TTCAATGGGGTTAGATGATCTAGTT 57.548 36.000 2.03 0.00 29.56 2.24
1306 1308 7.067496 TCAATGGGGTTAGATGATCTAGTTC 57.933 40.000 2.03 0.00 29.56 3.01
1307 1309 6.846505 TCAATGGGGTTAGATGATCTAGTTCT 59.153 38.462 2.03 0.00 29.56 3.01
1308 1310 7.348274 TCAATGGGGTTAGATGATCTAGTTCTT 59.652 37.037 2.03 0.00 29.56 2.52
1309 1311 8.651389 CAATGGGGTTAGATGATCTAGTTCTTA 58.349 37.037 2.03 0.00 29.56 2.10
1310 1312 8.798975 ATGGGGTTAGATGATCTAGTTCTTAA 57.201 34.615 2.03 0.00 29.56 1.85
1311 1313 8.798975 TGGGGTTAGATGATCTAGTTCTTAAT 57.201 34.615 2.03 0.00 29.56 1.40
1312 1314 9.892444 TGGGGTTAGATGATCTAGTTCTTAATA 57.108 33.333 2.03 0.00 29.56 0.98
1342 1344 9.959749 TTACTTTACTCAATTGACAAATTCCAC 57.040 29.630 3.38 0.00 33.59 4.02
1343 1345 8.006298 ACTTTACTCAATTGACAAATTCCACA 57.994 30.769 3.38 0.00 33.59 4.17
1344 1346 8.474025 ACTTTACTCAATTGACAAATTCCACAA 58.526 29.630 3.38 0.00 33.59 3.33
1345 1347 8.641499 TTTACTCAATTGACAAATTCCACAAC 57.359 30.769 3.38 0.00 33.59 3.32
1346 1348 6.219417 ACTCAATTGACAAATTCCACAACA 57.781 33.333 3.38 0.00 33.59 3.33
1347 1349 6.638610 ACTCAATTGACAAATTCCACAACAA 58.361 32.000 3.38 0.00 33.59 2.83
1348 1350 7.102346 ACTCAATTGACAAATTCCACAACAAA 58.898 30.769 3.38 0.00 33.59 2.83
1349 1351 7.769970 ACTCAATTGACAAATTCCACAACAAAT 59.230 29.630 3.38 0.00 33.59 2.32
1350 1352 8.140677 TCAATTGACAAATTCCACAACAAATC 57.859 30.769 3.38 0.00 33.59 2.17
1351 1353 7.986320 TCAATTGACAAATTCCACAACAAATCT 59.014 29.630 3.38 0.00 33.59 2.40
1352 1354 7.951530 ATTGACAAATTCCACAACAAATCTC 57.048 32.000 0.00 0.00 0.00 2.75
1353 1355 6.713762 TGACAAATTCCACAACAAATCTCT 57.286 33.333 0.00 0.00 0.00 3.10
1354 1356 7.111247 TGACAAATTCCACAACAAATCTCTT 57.889 32.000 0.00 0.00 0.00 2.85
1355 1357 6.979817 TGACAAATTCCACAACAAATCTCTTG 59.020 34.615 0.00 0.00 0.00 3.02
1356 1358 7.111247 ACAAATTCCACAACAAATCTCTTGA 57.889 32.000 0.00 0.00 0.00 3.02
1357 1359 7.729116 ACAAATTCCACAACAAATCTCTTGAT 58.271 30.769 0.00 0.00 33.70 2.57
1358 1360 8.206189 ACAAATTCCACAACAAATCTCTTGATT 58.794 29.630 0.00 0.00 44.08 2.57
1359 1361 8.706035 CAAATTCCACAACAAATCTCTTGATTC 58.294 33.333 0.00 0.00 41.62 2.52
1360 1362 5.611796 TCCACAACAAATCTCTTGATTCG 57.388 39.130 0.00 0.00 41.62 3.34
1361 1363 4.455533 TCCACAACAAATCTCTTGATTCGG 59.544 41.667 0.00 0.00 41.62 4.30
1362 1364 4.455533 CCACAACAAATCTCTTGATTCGGA 59.544 41.667 0.00 0.00 41.62 4.55
1363 1365 5.048782 CCACAACAAATCTCTTGATTCGGAA 60.049 40.000 0.00 0.00 41.62 4.30
1364 1366 6.349611 CCACAACAAATCTCTTGATTCGGAAT 60.350 38.462 2.19 2.19 41.62 3.01
1365 1367 7.086376 CACAACAAATCTCTTGATTCGGAATT 58.914 34.615 4.47 0.00 41.62 2.17
1366 1368 8.236586 CACAACAAATCTCTTGATTCGGAATTA 58.763 33.333 4.47 0.00 41.62 1.40
1367 1369 8.454106 ACAACAAATCTCTTGATTCGGAATTAG 58.546 33.333 4.47 6.14 41.62 1.73
1368 1370 7.559590 ACAAATCTCTTGATTCGGAATTAGG 57.440 36.000 4.47 1.48 41.62 2.69
1369 1371 6.543831 ACAAATCTCTTGATTCGGAATTAGGG 59.456 38.462 4.47 6.09 41.62 3.53
1370 1372 6.500589 AATCTCTTGATTCGGAATTAGGGA 57.499 37.500 14.74 14.74 38.42 4.20
1371 1373 5.277857 TCTCTTGATTCGGAATTAGGGAC 57.722 43.478 4.47 0.00 0.00 4.46
1372 1374 4.962995 TCTCTTGATTCGGAATTAGGGACT 59.037 41.667 4.47 0.00 46.37 3.85
1373 1375 5.069251 TCTCTTGATTCGGAATTAGGGACTC 59.931 44.000 4.47 0.00 41.75 3.36
1374 1376 4.714802 TCTTGATTCGGAATTAGGGACTCA 59.285 41.667 4.47 0.00 41.75 3.41
1375 1377 5.366768 TCTTGATTCGGAATTAGGGACTCAT 59.633 40.000 4.47 0.00 41.75 2.90
1376 1378 4.960938 TGATTCGGAATTAGGGACTCATG 58.039 43.478 4.47 0.00 41.75 3.07
1377 1379 4.408921 TGATTCGGAATTAGGGACTCATGT 59.591 41.667 4.47 0.00 41.75 3.21
1378 1380 5.600898 TGATTCGGAATTAGGGACTCATGTA 59.399 40.000 4.47 0.00 41.75 2.29
1379 1381 6.270000 TGATTCGGAATTAGGGACTCATGTAT 59.730 38.462 4.47 0.00 41.75 2.29
1380 1382 5.723672 TCGGAATTAGGGACTCATGTATC 57.276 43.478 0.00 0.00 41.75 2.24
1381 1383 5.144832 TCGGAATTAGGGACTCATGTATCA 58.855 41.667 0.00 0.00 41.75 2.15
1382 1384 5.780282 TCGGAATTAGGGACTCATGTATCAT 59.220 40.000 0.00 0.00 41.75 2.45
1383 1385 6.071334 TCGGAATTAGGGACTCATGTATCATC 60.071 42.308 0.00 0.00 41.75 2.92
1384 1386 6.071108 CGGAATTAGGGACTCATGTATCATCT 60.071 42.308 0.00 0.00 41.75 2.90
1385 1387 7.102346 GGAATTAGGGACTCATGTATCATCTG 58.898 42.308 0.00 0.00 41.75 2.90
1386 1388 7.038729 GGAATTAGGGACTCATGTATCATCTGA 60.039 40.741 0.00 0.00 41.75 3.27
1387 1389 8.446714 AATTAGGGACTCATGTATCATCTGAT 57.553 34.615 0.00 0.00 41.75 2.90
1388 1390 5.741962 AGGGACTCATGTATCATCTGATG 57.258 43.478 11.42 11.42 36.05 3.07
1494 1496 3.192466 CTGCACACTCGAATCATCATCA 58.808 45.455 0.00 0.00 0.00 3.07
1521 1523 6.374417 AATGGTGTTTATCCTACACAGAGT 57.626 37.500 8.22 0.00 45.95 3.24
1524 1526 4.863131 GGTGTTTATCCTACACAGAGTTCG 59.137 45.833 8.22 0.00 45.95 3.95
1777 1779 2.892852 TGGAGACAGCTTTTGGGAATTG 59.107 45.455 0.00 0.00 35.01 2.32
1782 1784 2.034558 ACAGCTTTTGGGAATTGACACG 59.965 45.455 0.00 0.00 0.00 4.49
1999 2007 4.023707 CCTTGAAGTGCAAAGAACCTACAG 60.024 45.833 0.00 0.00 35.74 2.74
2330 2338 3.558505 CCTTTGAGTTCAATGCTGTTCG 58.441 45.455 0.00 0.00 35.55 3.95
2364 2372 6.349115 GCCATGAGGTTTATATTCAGCATCTG 60.349 42.308 0.00 0.00 37.19 2.90
2465 2473 0.394352 AATCACCGGGACAGGATTGC 60.394 55.000 6.32 0.00 34.73 3.56
2576 2584 7.069877 ACTTGGAGACTCTCGACTACTATAT 57.930 40.000 1.74 0.00 0.00 0.86
2940 2948 2.207590 AGCTCATGTCATGTATGTGCG 58.792 47.619 21.83 11.13 44.99 5.34
2953 2961 3.917380 TGTATGTGCGCTGTTTTTATTGC 59.083 39.130 9.73 0.00 0.00 3.56
3004 3019 8.064222 GTGTTATGTTGATCCACGATATTTCTG 58.936 37.037 0.00 0.00 0.00 3.02
3056 3089 4.349342 AGATGGAACCTGAGCTTATAAGGG 59.651 45.833 14.28 8.95 35.24 3.95
3057 3090 2.172717 TGGAACCTGAGCTTATAAGGGC 59.827 50.000 14.28 1.64 35.24 5.19
3058 3091 2.439880 GGAACCTGAGCTTATAAGGGCT 59.560 50.000 14.28 6.76 41.88 5.19
3059 3092 3.117851 GGAACCTGAGCTTATAAGGGCTT 60.118 47.826 14.28 4.46 39.05 4.35
3060 3093 3.847671 ACCTGAGCTTATAAGGGCTTC 57.152 47.619 14.28 0.00 39.05 3.86
3061 3094 3.388913 ACCTGAGCTTATAAGGGCTTCT 58.611 45.455 14.28 2.18 39.05 2.85
3062 3095 3.135530 ACCTGAGCTTATAAGGGCTTCTG 59.864 47.826 14.28 5.70 39.05 3.02
3063 3096 3.137533 CTGAGCTTATAAGGGCTTCTGC 58.862 50.000 14.28 0.00 39.05 4.26
3064 3097 2.774234 TGAGCTTATAAGGGCTTCTGCT 59.226 45.455 14.28 3.12 39.05 4.24
3065 3098 3.200825 TGAGCTTATAAGGGCTTCTGCTT 59.799 43.478 14.28 0.00 39.05 3.91
3066 3099 3.549794 AGCTTATAAGGGCTTCTGCTTG 58.450 45.455 14.28 0.00 39.59 4.01
3113 3147 3.620488 TGGCCATCTAATTCACTGGAAC 58.380 45.455 0.00 0.00 35.46 3.62
3114 3148 2.952310 GGCCATCTAATTCACTGGAACC 59.048 50.000 0.00 0.00 35.46 3.62
3115 3149 3.372025 GGCCATCTAATTCACTGGAACCT 60.372 47.826 0.00 0.00 35.46 3.50
3116 3150 3.629398 GCCATCTAATTCACTGGAACCTG 59.371 47.826 4.69 0.00 35.46 4.00
3117 3151 4.626287 GCCATCTAATTCACTGGAACCTGA 60.626 45.833 4.82 0.00 35.46 3.86
3118 3152 5.121811 CCATCTAATTCACTGGAACCTGAG 58.878 45.833 4.82 0.00 35.46 3.35
3119 3153 4.207891 TCTAATTCACTGGAACCTGAGC 57.792 45.455 4.82 0.00 35.46 4.26
3120 3154 3.840666 TCTAATTCACTGGAACCTGAGCT 59.159 43.478 4.82 0.00 35.46 4.09
3121 3155 3.515602 AATTCACTGGAACCTGAGCTT 57.484 42.857 4.82 0.00 35.46 3.74
3122 3156 2.260844 TTCACTGGAACCTGAGCTTG 57.739 50.000 4.82 0.00 0.00 4.01
3123 3157 1.423584 TCACTGGAACCTGAGCTTGA 58.576 50.000 4.82 0.00 0.00 3.02
3124 3158 1.345741 TCACTGGAACCTGAGCTTGAG 59.654 52.381 4.82 0.00 0.00 3.02
3125 3159 1.071385 CACTGGAACCTGAGCTTGAGT 59.929 52.381 4.82 0.00 0.00 3.41
3126 3160 1.071385 ACTGGAACCTGAGCTTGAGTG 59.929 52.381 4.82 0.00 0.00 3.51
3127 3161 1.345741 CTGGAACCTGAGCTTGAGTGA 59.654 52.381 0.00 0.00 0.00 3.41
3128 3162 1.980765 TGGAACCTGAGCTTGAGTGAT 59.019 47.619 0.00 0.00 0.00 3.06
3129 3163 2.373169 TGGAACCTGAGCTTGAGTGATT 59.627 45.455 0.00 0.00 0.00 2.57
3130 3164 3.181440 TGGAACCTGAGCTTGAGTGATTT 60.181 43.478 0.00 0.00 0.00 2.17
3131 3165 3.823304 GGAACCTGAGCTTGAGTGATTTT 59.177 43.478 0.00 0.00 0.00 1.82
3132 3166 4.083057 GGAACCTGAGCTTGAGTGATTTTC 60.083 45.833 0.00 0.00 0.00 2.29
3160 3194 3.144506 ACCTGAGCTTGAGTGATTTGTG 58.855 45.455 0.00 0.00 0.00 3.33
3194 3228 4.412796 TCAGATGGAACCTGAGCTTATG 57.587 45.455 0.00 0.00 35.89 1.90
3255 3292 0.103572 AATACCGCGACAGCCGTAAT 59.896 50.000 8.23 0.00 39.68 1.89
3263 3300 1.852895 CGACAGCCGTAATGTAGAAGC 59.147 52.381 0.00 0.00 0.00 3.86
3273 3310 3.611766 AATGTAGAAGCAGGCGTAGTT 57.388 42.857 0.00 0.00 0.00 2.24
3280 3317 7.270047 TGTAGAAGCAGGCGTAGTTATTAAAT 58.730 34.615 0.00 0.00 0.00 1.40
3281 3318 8.415553 TGTAGAAGCAGGCGTAGTTATTAAATA 58.584 33.333 0.00 0.00 0.00 1.40
3282 3319 9.252962 GTAGAAGCAGGCGTAGTTATTAAATAA 57.747 33.333 0.00 0.00 0.00 1.40
3283 3320 8.726870 AGAAGCAGGCGTAGTTATTAAATAAA 57.273 30.769 0.00 0.00 0.00 1.40
3366 3406 8.285394 GGATTGACATGCTTGTAATATACTGTG 58.715 37.037 5.05 0.00 35.79 3.66
3414 3464 0.529378 AAAGCTATGCAGGCACAAGC 59.471 50.000 17.94 17.94 38.09 4.01
3461 3511 5.163893 ACCGTCGTTGATTTGTGTAATGATC 60.164 40.000 0.00 0.00 0.00 2.92
3462 3512 5.163903 CCGTCGTTGATTTGTGTAATGATCA 60.164 40.000 0.00 0.00 0.00 2.92
3463 3513 5.953777 CGTCGTTGATTTGTGTAATGATCAG 59.046 40.000 0.09 0.00 30.92 2.90
3464 3514 6.250819 GTCGTTGATTTGTGTAATGATCAGG 58.749 40.000 0.09 0.00 30.92 3.86
3466 3516 5.343249 GTTGATTTGTGTAATGATCAGGCC 58.657 41.667 0.09 0.00 30.92 5.19
3467 3517 4.858850 TGATTTGTGTAATGATCAGGCCT 58.141 39.130 0.00 0.00 0.00 5.19
3469 3519 2.715749 TGTGTAATGATCAGGCCTGG 57.284 50.000 32.23 14.13 0.00 4.45
3470 3520 1.915489 TGTGTAATGATCAGGCCTGGT 59.085 47.619 32.23 27.57 0.00 4.00
3471 3521 3.111484 TGTGTAATGATCAGGCCTGGTA 58.889 45.455 32.23 18.63 0.00 3.25
3472 3522 3.521531 TGTGTAATGATCAGGCCTGGTAA 59.478 43.478 32.23 20.64 0.00 2.85
3474 3524 4.516698 GTGTAATGATCAGGCCTGGTAATG 59.483 45.833 32.23 7.03 0.00 1.90
3476 3526 4.736611 AATGATCAGGCCTGGTAATGAT 57.263 40.909 32.23 17.48 35.16 2.45
3503 3587 6.148811 ACGTGATGGTTTATTGTAACCTCTTG 59.851 38.462 7.03 3.04 46.28 3.02
3553 3637 8.622948 ACTACAGTACTGAATATCATCGATCA 57.377 34.615 29.30 0.00 0.00 2.92
3554 3638 9.237187 ACTACAGTACTGAATATCATCGATCAT 57.763 33.333 29.30 3.40 0.00 2.45
3555 3639 9.715123 CTACAGTACTGAATATCATCGATCATC 57.285 37.037 29.30 0.00 0.00 2.92
3585 3669 6.671779 ACTGATTCAGGAGAAAAGTCTAGGAT 59.328 38.462 17.66 0.00 37.29 3.24
3586 3670 7.118496 TGATTCAGGAGAAAAGTCTAGGATC 57.882 40.000 0.00 0.00 37.29 3.36
3587 3671 5.584253 TTCAGGAGAAAAGTCTAGGATCG 57.416 43.478 0.00 0.00 32.80 3.69
3588 3672 4.601084 TCAGGAGAAAAGTCTAGGATCGT 58.399 43.478 0.00 0.00 32.80 3.73
3589 3673 4.399618 TCAGGAGAAAAGTCTAGGATCGTG 59.600 45.833 0.00 0.00 32.80 4.35
3590 3674 3.702045 AGGAGAAAAGTCTAGGATCGTGG 59.298 47.826 0.00 0.00 32.80 4.94
3591 3675 3.181474 GGAGAAAAGTCTAGGATCGTGGG 60.181 52.174 0.00 0.00 32.80 4.61
3592 3676 3.700038 GAGAAAAGTCTAGGATCGTGGGA 59.300 47.826 0.00 0.00 32.80 4.37
3593 3677 3.447944 AGAAAAGTCTAGGATCGTGGGAC 59.552 47.826 12.37 12.37 29.93 4.46
3594 3678 2.830651 AAGTCTAGGATCGTGGGACT 57.169 50.000 15.34 15.34 38.66 3.85
3595 3679 2.351706 AGTCTAGGATCGTGGGACTC 57.648 55.000 15.34 0.59 32.66 3.36
3597 3681 0.818445 TCTAGGATCGTGGGACTCGC 60.818 60.000 0.00 0.00 45.51 5.03
3598 3682 0.820074 CTAGGATCGTGGGACTCGCT 60.820 60.000 0.00 0.00 45.51 4.93
3599 3683 0.395311 TAGGATCGTGGGACTCGCTT 60.395 55.000 0.00 0.00 45.51 4.68
3600 3684 1.227002 GGATCGTGGGACTCGCTTC 60.227 63.158 0.00 0.00 45.51 3.86
3601 3685 1.511305 GATCGTGGGACTCGCTTCA 59.489 57.895 0.00 0.00 45.51 3.02
3602 3686 0.103208 GATCGTGGGACTCGCTTCAT 59.897 55.000 0.00 0.00 45.51 2.57
3603 3687 0.103208 ATCGTGGGACTCGCTTCATC 59.897 55.000 0.00 0.00 45.51 2.92
3604 3688 1.519455 CGTGGGACTCGCTTCATCC 60.519 63.158 0.00 0.00 38.81 3.51
3605 3689 1.901085 GTGGGACTCGCTTCATCCT 59.099 57.895 0.00 0.00 32.70 3.24
3606 3690 0.250513 GTGGGACTCGCTTCATCCTT 59.749 55.000 0.00 0.00 32.70 3.36
3607 3691 0.537188 TGGGACTCGCTTCATCCTTC 59.463 55.000 0.00 0.00 32.70 3.46
3608 3692 0.537188 GGGACTCGCTTCATCCTTCA 59.463 55.000 0.00 0.00 32.70 3.02
3609 3693 1.139853 GGGACTCGCTTCATCCTTCAT 59.860 52.381 0.00 0.00 32.70 2.57
3610 3694 2.478831 GGACTCGCTTCATCCTTCATC 58.521 52.381 0.00 0.00 0.00 2.92
3611 3695 2.123342 GACTCGCTTCATCCTTCATCG 58.877 52.381 0.00 0.00 0.00 3.84
3612 3696 1.478510 ACTCGCTTCATCCTTCATCGT 59.521 47.619 0.00 0.00 0.00 3.73
3613 3697 1.857217 CTCGCTTCATCCTTCATCGTG 59.143 52.381 0.00 0.00 0.00 4.35
3614 3698 0.933097 CGCTTCATCCTTCATCGTGG 59.067 55.000 0.00 0.00 0.00 4.94
3615 3699 0.659957 GCTTCATCCTTCATCGTGGC 59.340 55.000 0.00 0.00 0.00 5.01
3616 3700 1.303309 CTTCATCCTTCATCGTGGCC 58.697 55.000 0.00 0.00 0.00 5.36
3617 3701 0.911769 TTCATCCTTCATCGTGGCCT 59.088 50.000 3.32 0.00 0.00 5.19
3618 3702 0.178767 TCATCCTTCATCGTGGCCTG 59.821 55.000 3.32 0.00 0.00 4.85
3619 3703 0.816825 CATCCTTCATCGTGGCCTGG 60.817 60.000 3.32 0.00 0.00 4.45
3620 3704 1.274703 ATCCTTCATCGTGGCCTGGT 61.275 55.000 3.32 0.00 0.00 4.00
3621 3705 1.746615 CCTTCATCGTGGCCTGGTG 60.747 63.158 3.32 2.95 0.00 4.17
3622 3706 2.359850 TTCATCGTGGCCTGGTGC 60.360 61.111 3.32 0.00 40.16 5.01
3623 3707 2.809861 CTTCATCGTGGCCTGGTGCT 62.810 60.000 3.32 0.00 40.92 4.40
3624 3708 2.360350 CATCGTGGCCTGGTGCTT 60.360 61.111 3.32 0.00 40.92 3.91
3625 3709 1.973281 CATCGTGGCCTGGTGCTTT 60.973 57.895 3.32 0.00 40.92 3.51
3626 3710 1.228552 ATCGTGGCCTGGTGCTTTT 60.229 52.632 3.32 0.00 40.92 2.27
3627 3711 1.526575 ATCGTGGCCTGGTGCTTTTG 61.527 55.000 3.32 0.00 40.92 2.44
3628 3712 2.489275 CGTGGCCTGGTGCTTTTGT 61.489 57.895 3.32 0.00 40.92 2.83
3629 3713 1.822615 GTGGCCTGGTGCTTTTGTT 59.177 52.632 3.32 0.00 40.92 2.83
3630 3714 0.249447 GTGGCCTGGTGCTTTTGTTC 60.249 55.000 3.32 0.00 40.92 3.18
3631 3715 1.007387 GGCCTGGTGCTTTTGTTCG 60.007 57.895 0.00 0.00 40.92 3.95
3632 3716 1.733526 GCCTGGTGCTTTTGTTCGT 59.266 52.632 0.00 0.00 36.87 3.85
3633 3717 0.594796 GCCTGGTGCTTTTGTTCGTG 60.595 55.000 0.00 0.00 36.87 4.35
3634 3718 0.030638 CCTGGTGCTTTTGTTCGTGG 59.969 55.000 0.00 0.00 0.00 4.94
3635 3719 1.021202 CTGGTGCTTTTGTTCGTGGA 58.979 50.000 0.00 0.00 0.00 4.02
3636 3720 1.403679 CTGGTGCTTTTGTTCGTGGAA 59.596 47.619 0.00 0.00 0.00 3.53
3637 3721 1.133407 TGGTGCTTTTGTTCGTGGAAC 59.867 47.619 1.65 1.65 42.26 3.62
3650 3734 1.658994 GTGGAACGTTTGTCTGGTCA 58.341 50.000 0.46 0.00 0.00 4.02
3651 3735 2.218603 GTGGAACGTTTGTCTGGTCAT 58.781 47.619 0.46 0.00 0.00 3.06
3652 3736 2.032030 GTGGAACGTTTGTCTGGTCATG 60.032 50.000 0.46 0.00 0.00 3.07
3653 3737 2.218603 GGAACGTTTGTCTGGTCATGT 58.781 47.619 0.46 0.00 0.00 3.21
3654 3738 2.032030 GGAACGTTTGTCTGGTCATGTG 60.032 50.000 0.46 0.00 0.00 3.21
3655 3739 2.325583 ACGTTTGTCTGGTCATGTGT 57.674 45.000 0.00 0.00 0.00 3.72
3656 3740 2.210116 ACGTTTGTCTGGTCATGTGTC 58.790 47.619 0.00 0.00 0.00 3.67
3657 3741 2.158957 ACGTTTGTCTGGTCATGTGTCT 60.159 45.455 0.00 0.00 0.00 3.41
3658 3742 2.221749 CGTTTGTCTGGTCATGTGTCTG 59.778 50.000 0.00 0.00 0.00 3.51
3659 3743 3.206150 GTTTGTCTGGTCATGTGTCTGT 58.794 45.455 0.00 0.00 0.00 3.41
3660 3744 3.558931 TTGTCTGGTCATGTGTCTGTT 57.441 42.857 0.00 0.00 0.00 3.16
3661 3745 2.837498 TGTCTGGTCATGTGTCTGTTG 58.163 47.619 0.00 0.00 0.00 3.33
3662 3746 2.146342 GTCTGGTCATGTGTCTGTTGG 58.854 52.381 0.00 0.00 0.00 3.77
3663 3747 1.768275 TCTGGTCATGTGTCTGTTGGT 59.232 47.619 0.00 0.00 0.00 3.67
3664 3748 2.146342 CTGGTCATGTGTCTGTTGGTC 58.854 52.381 0.00 0.00 0.00 4.02
3665 3749 1.768275 TGGTCATGTGTCTGTTGGTCT 59.232 47.619 0.00 0.00 0.00 3.85
3666 3750 2.172505 TGGTCATGTGTCTGTTGGTCTT 59.827 45.455 0.00 0.00 0.00 3.01
3667 3751 2.549754 GGTCATGTGTCTGTTGGTCTTG 59.450 50.000 0.00 0.00 0.00 3.02
3668 3752 2.031682 GTCATGTGTCTGTTGGTCTTGC 60.032 50.000 0.00 0.00 0.00 4.01
3669 3753 2.158769 TCATGTGTCTGTTGGTCTTGCT 60.159 45.455 0.00 0.00 0.00 3.91
3670 3754 2.418368 TGTGTCTGTTGGTCTTGCTT 57.582 45.000 0.00 0.00 0.00 3.91
3671 3755 2.722094 TGTGTCTGTTGGTCTTGCTTT 58.278 42.857 0.00 0.00 0.00 3.51
3672 3756 3.879998 TGTGTCTGTTGGTCTTGCTTTA 58.120 40.909 0.00 0.00 0.00 1.85
3673 3757 3.876914 TGTGTCTGTTGGTCTTGCTTTAG 59.123 43.478 0.00 0.00 0.00 1.85
3674 3758 3.877508 GTGTCTGTTGGTCTTGCTTTAGT 59.122 43.478 0.00 0.00 0.00 2.24
3675 3759 4.024809 GTGTCTGTTGGTCTTGCTTTAGTC 60.025 45.833 0.00 0.00 0.00 2.59
3676 3760 4.141711 TGTCTGTTGGTCTTGCTTTAGTCT 60.142 41.667 0.00 0.00 0.00 3.24
3677 3761 4.816925 GTCTGTTGGTCTTGCTTTAGTCTT 59.183 41.667 0.00 0.00 0.00 3.01
3678 3762 5.297029 GTCTGTTGGTCTTGCTTTAGTCTTT 59.703 40.000 0.00 0.00 0.00 2.52
3679 3763 5.885912 TCTGTTGGTCTTGCTTTAGTCTTTT 59.114 36.000 0.00 0.00 0.00 2.27
3680 3764 6.377146 TCTGTTGGTCTTGCTTTAGTCTTTTT 59.623 34.615 0.00 0.00 0.00 1.94
3681 3765 7.554835 TCTGTTGGTCTTGCTTTAGTCTTTTTA 59.445 33.333 0.00 0.00 0.00 1.52
3682 3766 8.232913 TGTTGGTCTTGCTTTAGTCTTTTTAT 57.767 30.769 0.00 0.00 0.00 1.40
3683 3767 8.691797 TGTTGGTCTTGCTTTAGTCTTTTTATT 58.308 29.630 0.00 0.00 0.00 1.40
3724 3808 7.172342 TGCTATGATACTGTTTGGGTAGTTTT 58.828 34.615 0.00 0.00 0.00 2.43
3731 3815 4.208746 CTGTTTGGGTAGTTTTGGTGGTA 58.791 43.478 0.00 0.00 0.00 3.25
3733 3817 4.828387 TGTTTGGGTAGTTTTGGTGGTATC 59.172 41.667 0.00 0.00 0.00 2.24
3734 3818 4.726035 TTGGGTAGTTTTGGTGGTATCA 57.274 40.909 0.00 0.00 0.00 2.15
3742 3826 6.156748 AGTTTTGGTGGTATCAGGTTTTTC 57.843 37.500 0.00 0.00 0.00 2.29
3747 3831 4.262617 GGTGGTATCAGGTTTTTCTCCTC 58.737 47.826 0.00 0.00 32.37 3.71
3749 3833 5.189145 GGTGGTATCAGGTTTTTCTCCTCTA 59.811 44.000 0.00 0.00 32.37 2.43
3757 3841 5.586643 CAGGTTTTTCTCCTCTAATAGGTGC 59.413 44.000 0.00 0.00 46.62 5.01
3758 3842 5.250774 AGGTTTTTCTCCTCTAATAGGTGCA 59.749 40.000 0.00 0.00 46.62 4.57
3759 3843 5.586643 GGTTTTTCTCCTCTAATAGGTGCAG 59.413 44.000 0.00 0.00 46.62 4.41
3760 3844 5.359194 TTTTCTCCTCTAATAGGTGCAGG 57.641 43.478 0.00 0.00 46.62 4.85
3761 3845 3.689872 TCTCCTCTAATAGGTGCAGGT 57.310 47.619 0.00 0.00 46.62 4.00
3762 3846 3.995636 TCTCCTCTAATAGGTGCAGGTT 58.004 45.455 0.00 0.00 46.62 3.50
3763 3847 4.362677 TCTCCTCTAATAGGTGCAGGTTT 58.637 43.478 0.00 0.00 46.62 3.27
3764 3848 4.406003 TCTCCTCTAATAGGTGCAGGTTTC 59.594 45.833 0.00 0.00 46.62 2.78
3765 3849 3.454812 TCCTCTAATAGGTGCAGGTTTCC 59.545 47.826 0.00 0.00 46.62 3.13
3766 3850 3.456277 CCTCTAATAGGTGCAGGTTTCCT 59.544 47.826 0.00 0.00 40.94 3.36
3767 3851 4.684485 CCTCTAATAGGTGCAGGTTTCCTG 60.684 50.000 11.01 11.01 46.19 3.86
3768 3852 7.662526 CCTCTAATAGGTGCAGGTTTCCTGG 62.663 52.000 16.13 0.00 44.89 4.45
3776 3860 3.090504 AGGTTTCCTGGACTCCCTC 57.909 57.895 11.31 0.00 29.57 4.30
3777 3861 0.547954 AGGTTTCCTGGACTCCCTCC 60.548 60.000 11.31 2.54 39.97 4.30
3778 3862 1.597461 GTTTCCTGGACTCCCTCCG 59.403 63.158 0.00 0.00 43.03 4.63
3779 3863 1.157751 TTTCCTGGACTCCCTCCGT 59.842 57.895 0.00 0.00 43.03 4.69
3780 3864 0.903454 TTTCCTGGACTCCCTCCGTC 60.903 60.000 0.00 0.00 43.03 4.79
3784 3868 4.256462 GGACTCCCTCCGTCCTAC 57.744 66.667 2.11 0.00 45.87 3.18
3785 3869 1.305623 GGACTCCCTCCGTCCTACA 59.694 63.158 2.11 0.00 45.87 2.74
3786 3870 0.752376 GGACTCCCTCCGTCCTACAG 60.752 65.000 2.11 0.00 45.87 2.74
3787 3871 0.034283 GACTCCCTCCGTCCTACAGT 60.034 60.000 0.00 0.00 0.00 3.55
3788 3872 1.211457 GACTCCCTCCGTCCTACAGTA 59.789 57.143 0.00 0.00 0.00 2.74
3789 3873 1.851653 ACTCCCTCCGTCCTACAGTAT 59.148 52.381 0.00 0.00 0.00 2.12
3790 3874 3.051581 ACTCCCTCCGTCCTACAGTATA 58.948 50.000 0.00 0.00 0.00 1.47
3791 3875 3.461085 ACTCCCTCCGTCCTACAGTATAA 59.539 47.826 0.00 0.00 0.00 0.98
3792 3876 4.106019 ACTCCCTCCGTCCTACAGTATAAT 59.894 45.833 0.00 0.00 0.00 1.28
3793 3877 5.311649 ACTCCCTCCGTCCTACAGTATAATA 59.688 44.000 0.00 0.00 0.00 0.98
3794 3878 6.011805 ACTCCCTCCGTCCTACAGTATAATAT 60.012 42.308 0.00 0.00 0.00 1.28
3795 3879 7.183475 ACTCCCTCCGTCCTACAGTATAATATA 59.817 40.741 0.00 0.00 0.00 0.86
3796 3880 7.932134 TCCCTCCGTCCTACAGTATAATATAA 58.068 38.462 0.00 0.00 0.00 0.98
3797 3881 8.051535 TCCCTCCGTCCTACAGTATAATATAAG 58.948 40.741 0.00 0.00 0.00 1.73
3798 3882 8.051535 CCCTCCGTCCTACAGTATAATATAAGA 58.948 40.741 0.00 0.00 0.00 2.10
3799 3883 9.111613 CCTCCGTCCTACAGTATAATATAAGAG 57.888 40.741 0.00 0.00 0.00 2.85
3800 3884 8.503458 TCCGTCCTACAGTATAATATAAGAGC 57.497 38.462 0.00 0.00 0.00 4.09
3801 3885 7.279536 TCCGTCCTACAGTATAATATAAGAGCG 59.720 40.741 0.00 0.00 0.00 5.03
3802 3886 7.065563 CCGTCCTACAGTATAATATAAGAGCGT 59.934 40.741 0.00 0.00 0.00 5.07
3803 3887 8.449397 CGTCCTACAGTATAATATAAGAGCGTT 58.551 37.037 0.00 0.00 0.00 4.84
3826 3910 4.929819 TTTGACACTAGTGTAGTCTGCA 57.070 40.909 27.98 17.28 45.05 4.41
3827 3911 3.917329 TGACACTAGTGTAGTCTGCAC 57.083 47.619 27.98 12.74 45.05 4.57
3828 3912 3.487372 TGACACTAGTGTAGTCTGCACT 58.513 45.455 27.98 24.42 45.05 4.40
3829 3913 3.502595 TGACACTAGTGTAGTCTGCACTC 59.497 47.826 27.98 12.10 44.96 3.51
3830 3914 2.820787 ACACTAGTGTAGTCTGCACTCC 59.179 50.000 26.91 0.00 44.96 3.85
3831 3915 2.164624 CACTAGTGTAGTCTGCACTCCC 59.835 54.545 24.68 0.00 44.96 4.30
3832 3916 2.041891 ACTAGTGTAGTCTGCACTCCCT 59.958 50.000 24.68 7.83 44.96 4.20
3833 3917 1.551452 AGTGTAGTCTGCACTCCCTC 58.449 55.000 16.96 0.00 42.90 4.30
3834 3918 0.533032 GTGTAGTCTGCACTCCCTCC 59.467 60.000 13.29 0.00 33.62 4.30
3835 3919 0.965866 TGTAGTCTGCACTCCCTCCG 60.966 60.000 0.00 0.00 33.62 4.63
3836 3920 0.966370 GTAGTCTGCACTCCCTCCGT 60.966 60.000 0.00 0.00 33.62 4.69
3837 3921 0.680280 TAGTCTGCACTCCCTCCGTC 60.680 60.000 0.00 0.00 33.62 4.79
3838 3922 2.680352 TCTGCACTCCCTCCGTCC 60.680 66.667 0.00 0.00 0.00 4.79
3839 3923 3.775654 CTGCACTCCCTCCGTCCC 61.776 72.222 0.00 0.00 0.00 4.46
3840 3924 4.631740 TGCACTCCCTCCGTCCCA 62.632 66.667 0.00 0.00 0.00 4.37
3841 3925 3.083997 GCACTCCCTCCGTCCCAT 61.084 66.667 0.00 0.00 0.00 4.00
3842 3926 1.760875 GCACTCCCTCCGTCCCATA 60.761 63.158 0.00 0.00 0.00 2.74
3843 3927 1.335132 GCACTCCCTCCGTCCCATAA 61.335 60.000 0.00 0.00 0.00 1.90
3844 3928 1.424638 CACTCCCTCCGTCCCATAAT 58.575 55.000 0.00 0.00 0.00 1.28
3845 3929 2.605257 CACTCCCTCCGTCCCATAATA 58.395 52.381 0.00 0.00 0.00 0.98
3846 3930 2.563179 CACTCCCTCCGTCCCATAATAG 59.437 54.545 0.00 0.00 0.00 1.73
3847 3931 2.449730 ACTCCCTCCGTCCCATAATAGA 59.550 50.000 0.00 0.00 0.00 1.98
3848 3932 3.116862 ACTCCCTCCGTCCCATAATAGAA 60.117 47.826 0.00 0.00 0.00 2.10
3849 3933 3.507411 TCCCTCCGTCCCATAATAGAAG 58.493 50.000 0.00 0.00 0.00 2.85
3850 3934 3.141460 TCCCTCCGTCCCATAATAGAAGA 59.859 47.826 0.00 0.00 0.00 2.87
3851 3935 3.511934 CCCTCCGTCCCATAATAGAAGAG 59.488 52.174 0.00 0.00 0.00 2.85
3852 3936 4.153411 CCTCCGTCCCATAATAGAAGAGT 58.847 47.826 0.00 0.00 0.00 3.24
3853 3937 4.021894 CCTCCGTCCCATAATAGAAGAGTG 60.022 50.000 0.00 0.00 0.00 3.51
3854 3938 4.543689 TCCGTCCCATAATAGAAGAGTGT 58.456 43.478 0.00 0.00 0.00 3.55
3855 3939 4.960469 TCCGTCCCATAATAGAAGAGTGTT 59.040 41.667 0.00 0.00 0.00 3.32
3856 3940 5.424252 TCCGTCCCATAATAGAAGAGTGTTT 59.576 40.000 0.00 0.00 0.00 2.83
3857 3941 6.070424 TCCGTCCCATAATAGAAGAGTGTTTT 60.070 38.462 0.00 0.00 0.00 2.43
3858 3942 6.598064 CCGTCCCATAATAGAAGAGTGTTTTT 59.402 38.462 0.00 0.00 0.00 1.94
3859 3943 7.414098 CCGTCCCATAATAGAAGAGTGTTTTTG 60.414 40.741 0.00 0.00 0.00 2.44
3860 3944 7.333423 CGTCCCATAATAGAAGAGTGTTTTTGA 59.667 37.037 0.00 0.00 0.00 2.69
3861 3945 8.451748 GTCCCATAATAGAAGAGTGTTTTTGAC 58.548 37.037 0.00 0.00 0.00 3.18
3862 3946 8.160765 TCCCATAATAGAAGAGTGTTTTTGACA 58.839 33.333 0.00 0.00 35.42 3.58
3896 3980 0.723981 TTTTGTTTTTGCTGGTGCGC 59.276 45.000 0.00 0.00 43.34 6.09
3897 3981 0.108424 TTTGTTTTTGCTGGTGCGCT 60.108 45.000 9.73 0.00 43.34 5.92
3898 3982 0.805322 TTGTTTTTGCTGGTGCGCTG 60.805 50.000 9.73 0.00 43.34 5.18
3899 3983 1.950630 GTTTTTGCTGGTGCGCTGG 60.951 57.895 9.73 0.00 43.34 4.85
3900 3984 2.422231 TTTTTGCTGGTGCGCTGGT 61.422 52.632 9.73 0.00 43.34 4.00
3901 3985 2.348605 TTTTTGCTGGTGCGCTGGTC 62.349 55.000 9.73 0.00 43.34 4.02
3902 3986 3.772853 TTTGCTGGTGCGCTGGTCT 62.773 57.895 9.73 0.00 43.34 3.85
3903 3987 3.772853 TTGCTGGTGCGCTGGTCTT 62.773 57.895 9.73 0.00 43.34 3.01
3904 3988 2.980233 GCTGGTGCGCTGGTCTTT 60.980 61.111 9.73 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 5.230726 GCGAGAATTCAATCGATGCATTTTT 59.769 36.000 18.24 0.00 41.40 1.94
7 8 4.736793 GCGAGAATTCAATCGATGCATTTT 59.263 37.500 18.24 0.00 41.40 1.82
8 9 4.036027 AGCGAGAATTCAATCGATGCATTT 59.964 37.500 18.24 0.00 41.40 2.32
9 10 3.562973 AGCGAGAATTCAATCGATGCATT 59.437 39.130 18.24 0.00 41.40 3.56
10 11 3.059120 CAGCGAGAATTCAATCGATGCAT 60.059 43.478 18.38 0.00 46.49 3.96
11 12 2.286025 CAGCGAGAATTCAATCGATGCA 59.714 45.455 18.38 0.00 46.49 3.96
12 13 2.901209 CAGCGAGAATTCAATCGATGC 58.099 47.619 18.38 7.22 46.49 3.91
53 54 7.661847 CCCACTTTAGTTGTCTTTTCATCTACT 59.338 37.037 0.00 0.00 0.00 2.57
54 55 7.094762 CCCCACTTTAGTTGTCTTTTCATCTAC 60.095 40.741 0.00 0.00 0.00 2.59
89 90 5.646606 CCGTGTTCCAGAAAGAAAGAAAAA 58.353 37.500 0.00 0.00 0.00 1.94
93 94 2.158813 AGCCGTGTTCCAGAAAGAAAGA 60.159 45.455 0.00 0.00 0.00 2.52
94 95 2.031682 CAGCCGTGTTCCAGAAAGAAAG 60.032 50.000 0.00 0.00 0.00 2.62
95 96 1.946768 CAGCCGTGTTCCAGAAAGAAA 59.053 47.619 0.00 0.00 0.00 2.52
96 97 1.593196 CAGCCGTGTTCCAGAAAGAA 58.407 50.000 0.00 0.00 0.00 2.52
97 98 0.884704 GCAGCCGTGTTCCAGAAAGA 60.885 55.000 0.00 0.00 0.00 2.52
104 105 1.795170 ATGTGTTGCAGCCGTGTTCC 61.795 55.000 0.00 0.00 0.00 3.62
112 113 0.097674 CCTTAGCGATGTGTTGCAGC 59.902 55.000 0.00 0.00 37.19 5.25
149 150 6.907748 CGTTTTTGTTTTGTTTTGTTTGGTCT 59.092 30.769 0.00 0.00 0.00 3.85
224 225 4.511454 CCCAGTTTGCTTTTAGGCTTTTTC 59.489 41.667 0.00 0.00 0.00 2.29
231 232 6.868339 CACTTTATTCCCAGTTTGCTTTTAGG 59.132 38.462 0.00 0.00 0.00 2.69
256 257 3.914426 TCTCTGGTCAATTTAGGCTCC 57.086 47.619 0.00 0.00 0.00 4.70
273 274 4.521943 GCTGACACGAATGCATTATTCTC 58.478 43.478 12.97 5.88 42.47 2.87
348 349 1.815003 GCTTCAGGCTTGTGCATAAGT 59.185 47.619 22.26 2.96 41.91 2.24
358 359 0.178953 ACATTGGTGGCTTCAGGCTT 60.179 50.000 1.64 0.00 41.69 4.35
359 360 0.178953 AACATTGGTGGCTTCAGGCT 60.179 50.000 1.64 0.00 41.69 4.58
360 361 0.244721 GAACATTGGTGGCTTCAGGC 59.755 55.000 0.00 0.00 41.50 4.85
361 362 0.523072 CGAACATTGGTGGCTTCAGG 59.477 55.000 0.00 0.00 0.00 3.86
362 363 0.523072 CCGAACATTGGTGGCTTCAG 59.477 55.000 0.00 0.00 0.00 3.02
363 364 0.179004 ACCGAACATTGGTGGCTTCA 60.179 50.000 0.00 0.00 38.60 3.02
364 365 1.737793 CTACCGAACATTGGTGGCTTC 59.262 52.381 0.00 0.00 40.73 3.86
373 374 1.902556 CCGTCCCCTACCGAACATT 59.097 57.895 0.00 0.00 0.00 2.71
388 389 1.044231 TCATGTATACACCCCGCCGT 61.044 55.000 7.96 0.00 0.00 5.68
391 392 3.997762 TGTAATCATGTATACACCCCGC 58.002 45.455 7.96 0.00 0.00 6.13
397 398 7.801104 AGTTCCACCATGTAATCATGTATACA 58.199 34.615 8.27 8.27 46.99 2.29
401 402 7.223584 CCATAGTTCCACCATGTAATCATGTA 58.776 38.462 7.30 0.00 46.99 2.29
402 403 6.064060 CCATAGTTCCACCATGTAATCATGT 58.936 40.000 7.30 0.00 46.99 3.21
404 405 5.072741 GCCATAGTTCCACCATGTAATCAT 58.927 41.667 0.00 0.00 34.21 2.45
405 406 4.460263 GCCATAGTTCCACCATGTAATCA 58.540 43.478 0.00 0.00 0.00 2.57
406 407 3.821033 GGCCATAGTTCCACCATGTAATC 59.179 47.826 0.00 0.00 0.00 1.75
407 408 3.463329 AGGCCATAGTTCCACCATGTAAT 59.537 43.478 5.01 0.00 0.00 1.89
408 409 2.849943 AGGCCATAGTTCCACCATGTAA 59.150 45.455 5.01 0.00 0.00 2.41
431 432 9.443283 GAAATACATCAATAACAGCTCACATTC 57.557 33.333 0.00 0.00 0.00 2.67
491 493 8.302438 AGCTTTTATTGAACCTCAGAAAATCAG 58.698 33.333 0.00 0.00 29.04 2.90
531 533 2.869801 CAAACAGACTGAACGCAGGTTA 59.130 45.455 10.08 0.00 46.60 2.85
542 544 4.539870 ACAATTGCGAATCAAACAGACTG 58.460 39.130 5.05 0.00 38.34 3.51
618 620 6.369065 CACGGTAAGAAGTAAGAAGAAGCAAT 59.631 38.462 0.00 0.00 0.00 3.56
632 634 8.717821 TGTTTCTAATCATTTCACGGTAAGAAG 58.282 33.333 0.00 0.00 0.00 2.85
841 843 4.266976 GCGCATCCTGAATCAATTTTGAAG 59.733 41.667 0.30 0.00 41.13 3.02
853 855 3.474942 TGCATAAGCGCATCCTGAA 57.525 47.368 11.47 0.00 46.23 3.02
884 886 3.304257 GCACACCATCAAAGTCACAGAAG 60.304 47.826 0.00 0.00 0.00 2.85
893 895 3.253921 TCATCAACTGCACACCATCAAAG 59.746 43.478 0.00 0.00 0.00 2.77
902 904 3.410508 TGTTGCTATCATCAACTGCACA 58.589 40.909 7.28 0.00 43.00 4.57
903 905 4.627611 ATGTTGCTATCATCAACTGCAC 57.372 40.909 7.28 0.00 43.00 4.57
904 906 5.430886 AGTATGTTGCTATCATCAACTGCA 58.569 37.500 7.28 0.00 43.00 4.41
905 907 5.998454 AGTATGTTGCTATCATCAACTGC 57.002 39.130 7.28 0.00 43.00 4.40
1112 1114 9.868160 CCCCTATTCCTTCTTATTTTAACTGAT 57.132 33.333 0.00 0.00 0.00 2.90
1113 1115 9.064602 TCCCCTATTCCTTCTTATTTTAACTGA 57.935 33.333 0.00 0.00 0.00 3.41
1114 1116 9.695155 TTCCCCTATTCCTTCTTATTTTAACTG 57.305 33.333 0.00 0.00 0.00 3.16
1120 1122 9.740710 CGAATATTCCCCTATTCCTTCTTATTT 57.259 33.333 9.87 0.00 35.56 1.40
1121 1123 9.112658 TCGAATATTCCCCTATTCCTTCTTATT 57.887 33.333 9.87 0.00 35.56 1.40
1122 1124 8.680820 TCGAATATTCCCCTATTCCTTCTTAT 57.319 34.615 9.87 0.00 35.56 1.73
1123 1125 8.680820 ATCGAATATTCCCCTATTCCTTCTTA 57.319 34.615 9.87 0.00 35.56 2.10
1124 1126 7.575499 ATCGAATATTCCCCTATTCCTTCTT 57.425 36.000 9.87 0.00 35.56 2.52
1125 1127 6.127310 CGATCGAATATTCCCCTATTCCTTCT 60.127 42.308 10.26 0.00 35.56 2.85
1126 1128 6.043411 CGATCGAATATTCCCCTATTCCTTC 58.957 44.000 10.26 0.00 35.56 3.46
1127 1129 5.484290 ACGATCGAATATTCCCCTATTCCTT 59.516 40.000 24.34 0.00 35.56 3.36
1128 1130 5.024118 ACGATCGAATATTCCCCTATTCCT 58.976 41.667 24.34 0.00 35.56 3.36
1129 1131 5.340439 ACGATCGAATATTCCCCTATTCC 57.660 43.478 24.34 0.00 35.56 3.01
1130 1132 6.310711 GTGAACGATCGAATATTCCCCTATTC 59.689 42.308 24.34 10.43 35.61 1.75
1131 1133 6.014499 AGTGAACGATCGAATATTCCCCTATT 60.014 38.462 24.34 0.00 0.00 1.73
1132 1134 5.480772 AGTGAACGATCGAATATTCCCCTAT 59.519 40.000 24.34 0.00 0.00 2.57
1133 1135 4.831155 AGTGAACGATCGAATATTCCCCTA 59.169 41.667 24.34 0.00 0.00 3.53
1134 1136 3.641906 AGTGAACGATCGAATATTCCCCT 59.358 43.478 24.34 10.24 0.00 4.79
1135 1137 3.988517 GAGTGAACGATCGAATATTCCCC 59.011 47.826 24.34 8.23 0.00 4.81
1136 1138 3.988517 GGAGTGAACGATCGAATATTCCC 59.011 47.826 24.34 6.34 0.00 3.97
1137 1139 4.617959 TGGAGTGAACGATCGAATATTCC 58.382 43.478 24.34 20.71 0.00 3.01
1138 1140 6.583912 TTTGGAGTGAACGATCGAATATTC 57.416 37.500 24.34 15.21 0.00 1.75
1139 1141 6.978343 TTTTGGAGTGAACGATCGAATATT 57.022 33.333 24.34 5.07 0.00 1.28
1140 1142 6.816640 TCTTTTTGGAGTGAACGATCGAATAT 59.183 34.615 24.34 4.57 0.00 1.28
1141 1143 6.160684 TCTTTTTGGAGTGAACGATCGAATA 58.839 36.000 24.34 3.87 0.00 1.75
1142 1144 4.994852 TCTTTTTGGAGTGAACGATCGAAT 59.005 37.500 24.34 10.21 0.00 3.34
1143 1145 4.373527 TCTTTTTGGAGTGAACGATCGAA 58.626 39.130 24.34 3.78 0.00 3.71
1144 1146 3.985008 TCTTTTTGGAGTGAACGATCGA 58.015 40.909 24.34 0.00 0.00 3.59
1145 1147 3.123621 CCTCTTTTTGGAGTGAACGATCG 59.876 47.826 14.88 14.88 0.00 3.69
1146 1148 3.437049 CCCTCTTTTTGGAGTGAACGATC 59.563 47.826 0.00 0.00 0.00 3.69
1147 1149 3.181443 ACCCTCTTTTTGGAGTGAACGAT 60.181 43.478 0.00 0.00 0.00 3.73
1148 1150 2.171870 ACCCTCTTTTTGGAGTGAACGA 59.828 45.455 0.00 0.00 0.00 3.85
1149 1151 2.548480 GACCCTCTTTTTGGAGTGAACG 59.452 50.000 0.00 0.00 0.00 3.95
1150 1152 2.885266 GGACCCTCTTTTTGGAGTGAAC 59.115 50.000 0.00 0.00 0.00 3.18
1151 1153 2.783510 AGGACCCTCTTTTTGGAGTGAA 59.216 45.455 0.00 0.00 0.00 3.18
1152 1154 2.418669 AGGACCCTCTTTTTGGAGTGA 58.581 47.619 0.00 0.00 0.00 3.41
1153 1155 2.959465 AGGACCCTCTTTTTGGAGTG 57.041 50.000 0.00 0.00 0.00 3.51
1154 1156 4.601857 TCAATAGGACCCTCTTTTTGGAGT 59.398 41.667 0.00 0.00 0.00 3.85
1155 1157 5.179452 TCAATAGGACCCTCTTTTTGGAG 57.821 43.478 0.00 0.00 0.00 3.86
1156 1158 5.592587 TTCAATAGGACCCTCTTTTTGGA 57.407 39.130 0.00 0.00 0.00 3.53
1157 1159 6.664428 TTTTCAATAGGACCCTCTTTTTGG 57.336 37.500 0.00 0.00 0.00 3.28
1158 1160 7.951591 TCTTTTTCAATAGGACCCTCTTTTTG 58.048 34.615 0.00 0.00 0.00 2.44
1159 1161 8.547481 TTCTTTTTCAATAGGACCCTCTTTTT 57.453 30.769 0.00 0.00 0.00 1.94
1160 1162 8.547481 TTTCTTTTTCAATAGGACCCTCTTTT 57.453 30.769 0.00 0.00 0.00 2.27
1161 1163 8.727100 ATTTCTTTTTCAATAGGACCCTCTTT 57.273 30.769 0.00 0.00 0.00 2.52
1162 1164 8.727100 AATTTCTTTTTCAATAGGACCCTCTT 57.273 30.769 0.00 0.00 0.00 2.85
1163 1165 9.997172 ATAATTTCTTTTTCAATAGGACCCTCT 57.003 29.630 0.00 0.00 0.00 3.69
1165 1167 9.201989 GGATAATTTCTTTTTCAATAGGACCCT 57.798 33.333 0.00 0.00 0.00 4.34
1166 1168 8.977412 TGGATAATTTCTTTTTCAATAGGACCC 58.023 33.333 0.00 0.00 0.00 4.46
1274 1276 7.789202 TCATCTAACCCCATTGAATGAAAAA 57.211 32.000 6.76 0.00 0.00 1.94
1275 1277 7.840716 AGATCATCTAACCCCATTGAATGAAAA 59.159 33.333 6.76 0.00 30.69 2.29
1276 1278 7.356680 AGATCATCTAACCCCATTGAATGAAA 58.643 34.615 6.76 0.00 30.69 2.69
1277 1279 6.914665 AGATCATCTAACCCCATTGAATGAA 58.085 36.000 6.76 0.00 30.69 2.57
1278 1280 6.520021 AGATCATCTAACCCCATTGAATGA 57.480 37.500 6.76 0.00 31.16 2.57
1279 1281 7.456725 ACTAGATCATCTAACCCCATTGAATG 58.543 38.462 0.00 0.00 0.00 2.67
1280 1282 7.639062 ACTAGATCATCTAACCCCATTGAAT 57.361 36.000 0.00 0.00 0.00 2.57
1281 1283 7.348274 AGAACTAGATCATCTAACCCCATTGAA 59.652 37.037 0.00 0.00 0.00 2.69
1282 1284 6.846505 AGAACTAGATCATCTAACCCCATTGA 59.153 38.462 0.00 0.00 0.00 2.57
1283 1285 7.072263 AGAACTAGATCATCTAACCCCATTG 57.928 40.000 0.00 0.00 0.00 2.82
1284 1286 7.698163 AAGAACTAGATCATCTAACCCCATT 57.302 36.000 0.00 0.00 0.00 3.16
1285 1287 8.798975 TTAAGAACTAGATCATCTAACCCCAT 57.201 34.615 0.00 0.00 0.00 4.00
1286 1288 8.798975 ATTAAGAACTAGATCATCTAACCCCA 57.201 34.615 0.00 0.00 0.00 4.96
1316 1318 9.959749 GTGGAATTTGTCAATTGAGTAAAGTAA 57.040 29.630 8.80 3.12 32.35 2.24
1317 1319 9.126151 TGTGGAATTTGTCAATTGAGTAAAGTA 57.874 29.630 8.80 0.00 32.35 2.24
1318 1320 8.006298 TGTGGAATTTGTCAATTGAGTAAAGT 57.994 30.769 8.80 12.34 32.35 2.66
1319 1321 8.755018 GTTGTGGAATTTGTCAATTGAGTAAAG 58.245 33.333 8.80 0.00 32.35 1.85
1320 1322 8.253810 TGTTGTGGAATTTGTCAATTGAGTAAA 58.746 29.630 8.80 13.42 32.35 2.01
1321 1323 7.776107 TGTTGTGGAATTTGTCAATTGAGTAA 58.224 30.769 8.80 6.51 32.35 2.24
1322 1324 7.340122 TGTTGTGGAATTTGTCAATTGAGTA 57.660 32.000 8.80 0.00 32.35 2.59
1323 1325 6.219417 TGTTGTGGAATTTGTCAATTGAGT 57.781 33.333 8.80 0.00 32.35 3.41
1324 1326 7.536895 TTTGTTGTGGAATTTGTCAATTGAG 57.463 32.000 8.80 0.00 32.35 3.02
1325 1327 7.986320 AGATTTGTTGTGGAATTTGTCAATTGA 59.014 29.630 3.38 3.38 32.35 2.57
1326 1328 8.145316 AGATTTGTTGTGGAATTTGTCAATTG 57.855 30.769 0.00 0.00 32.35 2.32
1327 1329 8.206189 AGAGATTTGTTGTGGAATTTGTCAATT 58.794 29.630 0.00 0.00 35.12 2.32
1328 1330 7.729116 AGAGATTTGTTGTGGAATTTGTCAAT 58.271 30.769 0.00 0.00 0.00 2.57
1329 1331 7.111247 AGAGATTTGTTGTGGAATTTGTCAA 57.889 32.000 0.00 0.00 0.00 3.18
1330 1332 6.713762 AGAGATTTGTTGTGGAATTTGTCA 57.286 33.333 0.00 0.00 0.00 3.58
1331 1333 7.202526 TCAAGAGATTTGTTGTGGAATTTGTC 58.797 34.615 0.00 0.00 0.00 3.18
1332 1334 7.111247 TCAAGAGATTTGTTGTGGAATTTGT 57.889 32.000 0.00 0.00 0.00 2.83
1333 1335 8.597662 AATCAAGAGATTTGTTGTGGAATTTG 57.402 30.769 0.00 0.00 41.64 2.32
1334 1336 7.596248 CGAATCAAGAGATTTGTTGTGGAATTT 59.404 33.333 0.00 0.00 44.30 1.82
1335 1337 7.086376 CGAATCAAGAGATTTGTTGTGGAATT 58.914 34.615 0.00 0.00 44.30 2.17
1336 1338 6.349611 CCGAATCAAGAGATTTGTTGTGGAAT 60.350 38.462 0.00 0.00 44.30 3.01
1337 1339 5.048782 CCGAATCAAGAGATTTGTTGTGGAA 60.049 40.000 0.00 0.00 44.30 3.53
1338 1340 4.455533 CCGAATCAAGAGATTTGTTGTGGA 59.544 41.667 0.00 0.00 44.30 4.02
1339 1341 4.455533 TCCGAATCAAGAGATTTGTTGTGG 59.544 41.667 0.00 0.00 44.30 4.17
1340 1342 5.611796 TCCGAATCAAGAGATTTGTTGTG 57.388 39.130 0.00 0.00 44.30 3.33
1341 1343 6.824305 ATTCCGAATCAAGAGATTTGTTGT 57.176 33.333 0.00 0.00 44.30 3.32
1342 1344 7.912250 CCTAATTCCGAATCAAGAGATTTGTTG 59.088 37.037 0.00 0.00 44.30 3.33
1343 1345 7.067494 CCCTAATTCCGAATCAAGAGATTTGTT 59.933 37.037 0.00 0.00 44.30 2.83
1344 1346 6.543831 CCCTAATTCCGAATCAAGAGATTTGT 59.456 38.462 0.00 0.00 44.30 2.83
1345 1347 6.767902 TCCCTAATTCCGAATCAAGAGATTTG 59.232 38.462 0.00 0.00 44.30 2.32
1346 1348 6.768381 GTCCCTAATTCCGAATCAAGAGATTT 59.232 38.462 0.00 0.00 44.30 2.17
1347 1349 6.100424 AGTCCCTAATTCCGAATCAAGAGATT 59.900 38.462 0.00 0.00 46.85 2.40
1348 1350 5.604650 AGTCCCTAATTCCGAATCAAGAGAT 59.395 40.000 0.00 0.00 35.53 2.75
1349 1351 4.962995 AGTCCCTAATTCCGAATCAAGAGA 59.037 41.667 0.00 0.00 0.00 3.10
1350 1352 5.163405 TGAGTCCCTAATTCCGAATCAAGAG 60.163 44.000 0.00 0.00 28.57 2.85
1351 1353 4.714802 TGAGTCCCTAATTCCGAATCAAGA 59.285 41.667 0.00 0.00 28.57 3.02
1352 1354 5.023533 TGAGTCCCTAATTCCGAATCAAG 57.976 43.478 0.00 0.00 28.57 3.02
1353 1355 5.104527 ACATGAGTCCCTAATTCCGAATCAA 60.105 40.000 0.00 0.00 34.66 2.57
1354 1356 4.408921 ACATGAGTCCCTAATTCCGAATCA 59.591 41.667 0.00 3.06 35.37 2.57
1355 1357 4.962155 ACATGAGTCCCTAATTCCGAATC 58.038 43.478 0.00 0.00 0.00 2.52
1356 1358 6.270000 TGATACATGAGTCCCTAATTCCGAAT 59.730 38.462 0.00 0.00 0.00 3.34
1357 1359 5.600898 TGATACATGAGTCCCTAATTCCGAA 59.399 40.000 0.00 0.00 0.00 4.30
1358 1360 5.144832 TGATACATGAGTCCCTAATTCCGA 58.855 41.667 0.00 0.00 0.00 4.55
1359 1361 5.468540 TGATACATGAGTCCCTAATTCCG 57.531 43.478 0.00 0.00 0.00 4.30
1360 1362 7.038729 TCAGATGATACATGAGTCCCTAATTCC 60.039 40.741 0.00 0.00 0.00 3.01
1361 1363 7.901029 TCAGATGATACATGAGTCCCTAATTC 58.099 38.462 0.00 0.00 0.00 2.17
1362 1364 7.862274 TCAGATGATACATGAGTCCCTAATT 57.138 36.000 0.00 0.00 0.00 1.40
1363 1365 7.677319 TCATCAGATGATACATGAGTCCCTAAT 59.323 37.037 9.21 0.00 33.59 1.73
1364 1366 7.012607 TCATCAGATGATACATGAGTCCCTAA 58.987 38.462 9.21 0.00 33.59 2.69
1365 1367 6.555711 TCATCAGATGATACATGAGTCCCTA 58.444 40.000 9.21 0.00 33.59 3.53
1366 1368 5.400870 TCATCAGATGATACATGAGTCCCT 58.599 41.667 9.21 0.00 33.59 4.20
1367 1369 5.735285 TCATCAGATGATACATGAGTCCC 57.265 43.478 9.21 0.00 33.59 4.46
1368 1370 7.876582 TGATTTCATCAGATGATACATGAGTCC 59.123 37.037 14.11 0.00 39.39 3.85
1369 1371 8.828688 TGATTTCATCAGATGATACATGAGTC 57.171 34.615 14.11 5.23 39.39 3.36
1385 1387 7.496920 TGTAGTGAACATCCAGATGATTTCATC 59.503 37.037 14.42 11.76 42.09 2.92
1386 1388 7.281774 GTGTAGTGAACATCCAGATGATTTCAT 59.718 37.037 14.42 7.50 41.10 2.57
1387 1389 6.595326 GTGTAGTGAACATCCAGATGATTTCA 59.405 38.462 14.42 11.14 41.10 2.69
1388 1390 6.595326 TGTGTAGTGAACATCCAGATGATTTC 59.405 38.462 14.42 8.88 41.10 2.17
1494 1496 5.321102 TGTGTAGGATAAACACCATTTGCT 58.679 37.500 4.09 0.00 45.33 3.91
1521 1523 5.278709 GGAGATGCTATGAGAAGATGTCGAA 60.279 44.000 0.00 0.00 0.00 3.71
1524 1526 4.322650 GGGGAGATGCTATGAGAAGATGTC 60.323 50.000 0.00 0.00 0.00 3.06
1768 1770 1.060729 TCTCCCGTGTCAATTCCCAA 58.939 50.000 0.00 0.00 0.00 4.12
1777 1779 0.033504 TGCTTCAAGTCTCCCGTGTC 59.966 55.000 0.00 0.00 0.00 3.67
1782 1784 0.687354 TCACCTGCTTCAAGTCTCCC 59.313 55.000 0.00 0.00 0.00 4.30
1999 2007 2.167281 TGTAAGACATGAGCTCAGAGCC 59.833 50.000 22.96 9.73 43.77 4.70
2091 2099 3.055819 TGAAGTTCTCGCCTTTGATAGCT 60.056 43.478 4.17 0.00 0.00 3.32
2330 2338 0.393537 AACCTCATGGCTAGCAGCAC 60.394 55.000 18.24 0.00 44.75 4.40
2364 2372 1.132500 CCTCCCCAGGTCTTATGTCC 58.868 60.000 0.00 0.00 34.60 4.02
2465 2473 3.626670 GGACAGGCTCTTGATCATTCTTG 59.373 47.826 0.00 0.00 0.00 3.02
2576 2584 4.154015 CGTCTATTGACTCAAACATTGCCA 59.846 41.667 5.76 0.00 40.86 4.92
2940 2948 9.797473 GAATTAAGTTTCAGCAATAAAAACAGC 57.203 29.630 0.00 0.00 35.77 4.40
2984 2999 5.753438 GCTACAGAAATATCGTGGATCAACA 59.247 40.000 0.13 0.00 0.00 3.33
3004 3019 2.615747 GGGAAAGGACAAGTCAGGCTAC 60.616 54.545 2.29 0.00 0.00 3.58
3056 3089 0.514691 CTGAACCGACAAGCAGAAGC 59.485 55.000 0.00 0.00 42.56 3.86
3057 3090 1.871080 ACTGAACCGACAAGCAGAAG 58.129 50.000 0.00 0.00 32.86 2.85
3058 3091 1.939934 CAACTGAACCGACAAGCAGAA 59.060 47.619 0.00 0.00 32.86 3.02
3059 3092 1.134521 ACAACTGAACCGACAAGCAGA 60.135 47.619 0.00 0.00 32.86 4.26
3060 3093 1.261619 GACAACTGAACCGACAAGCAG 59.738 52.381 0.00 0.00 34.65 4.24
3061 3094 1.134521 AGACAACTGAACCGACAAGCA 60.135 47.619 0.00 0.00 0.00 3.91
3062 3095 1.261619 CAGACAACTGAACCGACAAGC 59.738 52.381 0.00 0.00 46.03 4.01
3063 3096 2.540101 GACAGACAACTGAACCGACAAG 59.460 50.000 0.00 0.00 46.03 3.16
3064 3097 2.167693 AGACAGACAACTGAACCGACAA 59.832 45.455 0.00 0.00 46.03 3.18
3065 3098 1.754803 AGACAGACAACTGAACCGACA 59.245 47.619 0.00 0.00 46.03 4.35
3066 3099 2.128035 CAGACAGACAACTGAACCGAC 58.872 52.381 0.00 0.00 46.03 4.79
3113 3147 4.416505 GTGAAAATCACTCAAGCTCAGG 57.583 45.455 3.31 0.00 43.73 3.86
3125 3159 3.149196 GCTCAGGTTCCAGTGAAAATCA 58.851 45.455 0.00 0.00 30.79 2.57
3126 3160 3.416156 AGCTCAGGTTCCAGTGAAAATC 58.584 45.455 0.00 0.00 30.79 2.17
3127 3161 3.515602 AGCTCAGGTTCCAGTGAAAAT 57.484 42.857 0.00 0.00 30.79 1.82
3128 3162 2.951642 CAAGCTCAGGTTCCAGTGAAAA 59.048 45.455 0.00 0.00 30.79 2.29
3129 3163 2.172505 TCAAGCTCAGGTTCCAGTGAAA 59.827 45.455 0.00 0.00 30.79 2.69
3130 3164 1.768275 TCAAGCTCAGGTTCCAGTGAA 59.232 47.619 0.00 0.00 0.00 3.18
3131 3165 1.345741 CTCAAGCTCAGGTTCCAGTGA 59.654 52.381 0.00 0.00 0.00 3.41
3132 3166 1.071385 ACTCAAGCTCAGGTTCCAGTG 59.929 52.381 0.00 0.00 0.00 3.66
3160 3194 3.679389 TCCATCTGAAACTGGAGAAAGC 58.321 45.455 0.00 0.00 36.63 3.51
3194 3228 0.961753 ACAAGCAGCAAAGCCCTTAC 59.038 50.000 0.00 0.00 34.23 2.34
3255 3292 4.730949 AATAACTACGCCTGCTTCTACA 57.269 40.909 0.00 0.00 0.00 2.74
3366 3406 7.727181 TCATCTCTAAACACCCTCTAATTAGC 58.273 38.462 7.67 0.00 0.00 3.09
3378 3426 9.657121 GCATAGCTTTTAATCATCTCTAAACAC 57.343 33.333 0.00 0.00 0.00 3.32
3461 3511 1.134401 ACGTCATCATTACCAGGCCTG 60.134 52.381 26.87 26.87 0.00 4.85
3462 3512 1.134401 CACGTCATCATTACCAGGCCT 60.134 52.381 0.00 0.00 0.00 5.19
3463 3513 1.134521 TCACGTCATCATTACCAGGCC 60.135 52.381 0.00 0.00 0.00 5.19
3464 3514 2.309528 TCACGTCATCATTACCAGGC 57.690 50.000 0.00 0.00 0.00 4.85
3466 3516 3.797039 ACCATCACGTCATCATTACCAG 58.203 45.455 0.00 0.00 0.00 4.00
3467 3517 3.904800 ACCATCACGTCATCATTACCA 57.095 42.857 0.00 0.00 0.00 3.25
3469 3519 7.693952 ACAATAAACCATCACGTCATCATTAC 58.306 34.615 0.00 0.00 0.00 1.89
3470 3520 7.857734 ACAATAAACCATCACGTCATCATTA 57.142 32.000 0.00 0.00 0.00 1.90
3471 3521 6.757897 ACAATAAACCATCACGTCATCATT 57.242 33.333 0.00 0.00 0.00 2.57
3472 3522 7.201696 GGTTACAATAAACCATCACGTCATCAT 60.202 37.037 0.94 0.00 46.85 2.45
3474 3524 6.483687 GGTTACAATAAACCATCACGTCATC 58.516 40.000 0.94 0.00 46.85 2.92
3476 3526 5.866335 GGTTACAATAAACCATCACGTCA 57.134 39.130 0.94 0.00 46.85 4.35
3545 3629 2.316119 TCAGTACGCGATGATCGATG 57.684 50.000 20.25 12.26 43.74 3.84
3548 3632 2.650608 TGAATCAGTACGCGATGATCG 58.349 47.619 15.93 11.02 43.89 3.69
3549 3633 2.983136 CCTGAATCAGTACGCGATGATC 59.017 50.000 15.93 12.88 35.11 2.92
3550 3634 2.623416 TCCTGAATCAGTACGCGATGAT 59.377 45.455 15.93 16.32 37.77 2.45
3551 3635 2.021457 TCCTGAATCAGTACGCGATGA 58.979 47.619 15.93 14.60 0.00 2.92
3552 3636 2.033424 TCTCCTGAATCAGTACGCGATG 59.967 50.000 15.93 8.90 0.00 3.84
3553 3637 2.298610 TCTCCTGAATCAGTACGCGAT 58.701 47.619 15.93 0.00 0.00 4.58
3554 3638 1.746470 TCTCCTGAATCAGTACGCGA 58.254 50.000 15.93 0.00 0.00 5.87
3555 3639 2.561733 TTCTCCTGAATCAGTACGCG 57.438 50.000 3.53 3.53 0.00 6.01
3585 3669 1.511305 GATGAAGCGAGTCCCACGA 59.489 57.895 0.00 0.00 0.00 4.35
3586 3670 1.519455 GGATGAAGCGAGTCCCACG 60.519 63.158 0.00 0.00 0.00 4.94
3587 3671 0.250513 AAGGATGAAGCGAGTCCCAC 59.749 55.000 0.00 0.00 32.31 4.61
3588 3672 0.537188 GAAGGATGAAGCGAGTCCCA 59.463 55.000 0.00 0.00 32.31 4.37
3589 3673 0.537188 TGAAGGATGAAGCGAGTCCC 59.463 55.000 0.00 0.00 32.31 4.46
3590 3674 2.478831 GATGAAGGATGAAGCGAGTCC 58.521 52.381 0.00 0.00 0.00 3.85
3591 3675 2.123342 CGATGAAGGATGAAGCGAGTC 58.877 52.381 0.00 0.00 0.00 3.36
3592 3676 1.478510 ACGATGAAGGATGAAGCGAGT 59.521 47.619 0.00 0.00 0.00 4.18
3593 3677 1.857217 CACGATGAAGGATGAAGCGAG 59.143 52.381 0.00 0.00 0.00 5.03
3594 3678 1.471501 CCACGATGAAGGATGAAGCGA 60.472 52.381 0.00 0.00 0.00 4.93
3595 3679 0.933097 CCACGATGAAGGATGAAGCG 59.067 55.000 0.00 0.00 0.00 4.68
3596 3680 0.659957 GCCACGATGAAGGATGAAGC 59.340 55.000 0.00 0.00 0.00 3.86
3597 3681 1.134280 AGGCCACGATGAAGGATGAAG 60.134 52.381 5.01 0.00 0.00 3.02
3598 3682 0.911769 AGGCCACGATGAAGGATGAA 59.088 50.000 5.01 0.00 0.00 2.57
3599 3683 0.178767 CAGGCCACGATGAAGGATGA 59.821 55.000 5.01 0.00 0.00 2.92
3600 3684 0.816825 CCAGGCCACGATGAAGGATG 60.817 60.000 5.01 0.00 0.00 3.51
3601 3685 1.274703 ACCAGGCCACGATGAAGGAT 61.275 55.000 5.01 0.00 0.00 3.24
3602 3686 1.918293 ACCAGGCCACGATGAAGGA 60.918 57.895 5.01 0.00 0.00 3.36
3603 3687 1.746615 CACCAGGCCACGATGAAGG 60.747 63.158 5.01 0.00 0.00 3.46
3604 3688 2.401766 GCACCAGGCCACGATGAAG 61.402 63.158 5.01 0.00 36.11 3.02
3605 3689 2.359850 GCACCAGGCCACGATGAA 60.360 61.111 5.01 0.00 36.11 2.57
3606 3690 2.410322 AAAGCACCAGGCCACGATGA 62.410 55.000 5.01 0.00 46.50 2.92
3607 3691 1.526575 AAAAGCACCAGGCCACGATG 61.527 55.000 5.01 0.00 46.50 3.84
3608 3692 1.228552 AAAAGCACCAGGCCACGAT 60.229 52.632 5.01 0.00 46.50 3.73
3609 3693 2.192861 CAAAAGCACCAGGCCACGA 61.193 57.895 5.01 0.00 46.50 4.35
3610 3694 2.015227 AACAAAAGCACCAGGCCACG 62.015 55.000 5.01 0.00 46.50 4.94
3611 3695 0.249447 GAACAAAAGCACCAGGCCAC 60.249 55.000 5.01 0.00 46.50 5.01
3612 3696 1.733402 CGAACAAAAGCACCAGGCCA 61.733 55.000 5.01 0.00 46.50 5.36
3613 3697 1.007387 CGAACAAAAGCACCAGGCC 60.007 57.895 0.00 0.00 46.50 5.19
3614 3698 0.594796 CACGAACAAAAGCACCAGGC 60.595 55.000 0.00 0.00 45.30 4.85
3615 3699 0.030638 CCACGAACAAAAGCACCAGG 59.969 55.000 0.00 0.00 0.00 4.45
3616 3700 1.021202 TCCACGAACAAAAGCACCAG 58.979 50.000 0.00 0.00 0.00 4.00
3617 3701 1.133407 GTTCCACGAACAAAAGCACCA 59.867 47.619 0.00 0.00 41.62 4.17
3618 3702 1.835121 GTTCCACGAACAAAAGCACC 58.165 50.000 0.00 0.00 41.62 5.01
3619 3703 1.202098 ACGTTCCACGAACAAAAGCAC 60.202 47.619 2.75 0.00 46.05 4.40
3620 3704 1.088306 ACGTTCCACGAACAAAAGCA 58.912 45.000 2.75 0.00 46.05 3.91
3621 3705 2.182904 AACGTTCCACGAACAAAAGC 57.817 45.000 2.75 0.00 46.05 3.51
3622 3706 3.494232 ACAAACGTTCCACGAACAAAAG 58.506 40.909 0.00 0.00 46.05 2.27
3623 3707 3.188873 AGACAAACGTTCCACGAACAAAA 59.811 39.130 0.00 0.00 46.05 2.44
3624 3708 2.743126 AGACAAACGTTCCACGAACAAA 59.257 40.909 0.00 0.00 46.05 2.83
3625 3709 2.094575 CAGACAAACGTTCCACGAACAA 59.905 45.455 0.00 0.00 46.05 2.83
3626 3710 1.661617 CAGACAAACGTTCCACGAACA 59.338 47.619 0.00 0.00 46.05 3.18
3627 3711 1.004292 CCAGACAAACGTTCCACGAAC 60.004 52.381 0.00 0.00 46.05 3.95
3628 3712 1.292061 CCAGACAAACGTTCCACGAA 58.708 50.000 0.00 0.00 46.05 3.85
3629 3713 0.176219 ACCAGACAAACGTTCCACGA 59.824 50.000 0.00 0.00 46.05 4.35
3631 3715 1.658994 TGACCAGACAAACGTTCCAC 58.341 50.000 0.00 0.00 0.00 4.02
3632 3716 2.217750 CATGACCAGACAAACGTTCCA 58.782 47.619 0.00 0.00 0.00 3.53
3633 3717 2.032030 CACATGACCAGACAAACGTTCC 60.032 50.000 0.00 0.00 0.00 3.62
3634 3718 2.612212 ACACATGACCAGACAAACGTTC 59.388 45.455 0.00 0.00 0.00 3.95
3635 3719 2.612212 GACACATGACCAGACAAACGTT 59.388 45.455 0.00 0.00 0.00 3.99
3636 3720 2.158957 AGACACATGACCAGACAAACGT 60.159 45.455 0.00 0.00 0.00 3.99
3637 3721 2.221749 CAGACACATGACCAGACAAACG 59.778 50.000 0.00 0.00 0.00 3.60
3638 3722 3.206150 ACAGACACATGACCAGACAAAC 58.794 45.455 0.00 0.00 0.00 2.93
3639 3723 3.558931 ACAGACACATGACCAGACAAA 57.441 42.857 0.00 0.00 0.00 2.83
3640 3724 3.205338 CAACAGACACATGACCAGACAA 58.795 45.455 0.00 0.00 0.00 3.18
3641 3725 2.485302 CCAACAGACACATGACCAGACA 60.485 50.000 0.00 0.00 0.00 3.41
3642 3726 2.146342 CCAACAGACACATGACCAGAC 58.854 52.381 0.00 0.00 0.00 3.51
3643 3727 1.768275 ACCAACAGACACATGACCAGA 59.232 47.619 0.00 0.00 0.00 3.86
3644 3728 2.146342 GACCAACAGACACATGACCAG 58.854 52.381 0.00 0.00 0.00 4.00
3645 3729 1.768275 AGACCAACAGACACATGACCA 59.232 47.619 0.00 0.00 0.00 4.02
3646 3730 2.549754 CAAGACCAACAGACACATGACC 59.450 50.000 0.00 0.00 0.00 4.02
3647 3731 2.031682 GCAAGACCAACAGACACATGAC 60.032 50.000 0.00 0.00 0.00 3.06
3648 3732 2.158769 AGCAAGACCAACAGACACATGA 60.159 45.455 0.00 0.00 0.00 3.07
3649 3733 2.224606 AGCAAGACCAACAGACACATG 58.775 47.619 0.00 0.00 0.00 3.21
3650 3734 2.645838 AGCAAGACCAACAGACACAT 57.354 45.000 0.00 0.00 0.00 3.21
3651 3735 2.418368 AAGCAAGACCAACAGACACA 57.582 45.000 0.00 0.00 0.00 3.72
3652 3736 3.877508 ACTAAAGCAAGACCAACAGACAC 59.122 43.478 0.00 0.00 0.00 3.67
3653 3737 4.127171 GACTAAAGCAAGACCAACAGACA 58.873 43.478 0.00 0.00 0.00 3.41
3654 3738 4.381411 AGACTAAAGCAAGACCAACAGAC 58.619 43.478 0.00 0.00 0.00 3.51
3655 3739 4.689612 AGACTAAAGCAAGACCAACAGA 57.310 40.909 0.00 0.00 0.00 3.41
3656 3740 5.757850 AAAGACTAAAGCAAGACCAACAG 57.242 39.130 0.00 0.00 0.00 3.16
3657 3741 6.524101 AAAAAGACTAAAGCAAGACCAACA 57.476 33.333 0.00 0.00 0.00 3.33
3660 3744 9.569122 AGTAATAAAAAGACTAAAGCAAGACCA 57.431 29.630 0.00 0.00 0.00 4.02
3661 3745 9.827411 CAGTAATAAAAAGACTAAAGCAAGACC 57.173 33.333 0.00 0.00 0.00 3.85
3724 3808 3.655777 AGGAGAAAAACCTGATACCACCA 59.344 43.478 0.00 0.00 36.30 4.17
3742 3826 6.632297 AGGAAACCTGCACCTATTAGAGGAG 61.632 48.000 0.00 0.00 39.27 3.69
3758 3842 0.547954 GGAGGGAGTCCAGGAAACCT 60.548 60.000 12.30 7.42 46.10 3.50
3759 3843 1.992037 GGAGGGAGTCCAGGAAACC 59.008 63.158 12.30 0.00 46.10 3.27
3768 3852 0.034283 ACTGTAGGACGGAGGGAGTC 60.034 60.000 0.00 0.00 37.86 3.36
3769 3853 1.293062 TACTGTAGGACGGAGGGAGT 58.707 55.000 0.00 0.00 0.00 3.85
3770 3854 2.660670 ATACTGTAGGACGGAGGGAG 57.339 55.000 0.00 0.00 0.00 4.30
3771 3855 4.736611 ATTATACTGTAGGACGGAGGGA 57.263 45.455 0.00 0.00 0.00 4.20
3772 3856 8.051535 TCTTATATTATACTGTAGGACGGAGGG 58.948 40.741 0.00 0.00 0.00 4.30
3773 3857 9.111613 CTCTTATATTATACTGTAGGACGGAGG 57.888 40.741 0.00 0.00 0.00 4.30
3774 3858 8.614346 GCTCTTATATTATACTGTAGGACGGAG 58.386 40.741 0.00 0.00 0.00 4.63
3775 3859 7.279536 CGCTCTTATATTATACTGTAGGACGGA 59.720 40.741 0.00 0.00 0.00 4.69
3776 3860 7.065563 ACGCTCTTATATTATACTGTAGGACGG 59.934 40.741 0.00 0.00 0.00 4.79
3777 3861 7.972527 ACGCTCTTATATTATACTGTAGGACG 58.027 38.462 0.00 0.00 0.00 4.79
3803 3887 5.522460 GTGCAGACTACACTAGTGTCAAAAA 59.478 40.000 31.11 13.19 43.74 1.94
3804 3888 5.047847 GTGCAGACTACACTAGTGTCAAAA 58.952 41.667 31.11 13.57 43.74 2.44
3805 3889 4.341235 AGTGCAGACTACACTAGTGTCAAA 59.659 41.667 31.11 13.94 46.32 2.69
3806 3890 3.889538 AGTGCAGACTACACTAGTGTCAA 59.110 43.478 31.11 14.69 46.32 3.18
3807 3891 3.487372 AGTGCAGACTACACTAGTGTCA 58.513 45.455 31.11 18.73 46.32 3.58
3815 3899 0.533032 GGAGGGAGTGCAGACTACAC 59.467 60.000 0.00 0.00 34.18 2.90
3816 3900 0.965866 CGGAGGGAGTGCAGACTACA 60.966 60.000 0.00 0.00 34.18 2.74
3817 3901 0.966370 ACGGAGGGAGTGCAGACTAC 60.966 60.000 0.00 0.00 30.16 2.73
3818 3902 0.680280 GACGGAGGGAGTGCAGACTA 60.680 60.000 0.00 0.00 30.16 2.59
3819 3903 1.979693 GACGGAGGGAGTGCAGACT 60.980 63.158 0.00 0.00 33.98 3.24
3820 3904 2.574399 GACGGAGGGAGTGCAGAC 59.426 66.667 0.00 0.00 0.00 3.51
3821 3905 2.680352 GGACGGAGGGAGTGCAGA 60.680 66.667 0.00 0.00 0.00 4.26
3822 3906 3.775654 GGGACGGAGGGAGTGCAG 61.776 72.222 0.00 0.00 0.00 4.41
3823 3907 2.523740 TATGGGACGGAGGGAGTGCA 62.524 60.000 0.00 0.00 0.00 4.57
3824 3908 1.335132 TTATGGGACGGAGGGAGTGC 61.335 60.000 0.00 0.00 0.00 4.40
3825 3909 1.424638 ATTATGGGACGGAGGGAGTG 58.575 55.000 0.00 0.00 0.00 3.51
3826 3910 2.449730 TCTATTATGGGACGGAGGGAGT 59.550 50.000 0.00 0.00 0.00 3.85
3827 3911 3.170991 TCTATTATGGGACGGAGGGAG 57.829 52.381 0.00 0.00 0.00 4.30
3828 3912 3.141460 TCTTCTATTATGGGACGGAGGGA 59.859 47.826 0.00 0.00 0.00 4.20
3829 3913 3.507411 TCTTCTATTATGGGACGGAGGG 58.493 50.000 0.00 0.00 0.00 4.30
3830 3914 4.021894 CACTCTTCTATTATGGGACGGAGG 60.022 50.000 0.00 0.00 0.00 4.30
3831 3915 4.585162 ACACTCTTCTATTATGGGACGGAG 59.415 45.833 0.00 0.00 0.00 4.63
3832 3916 4.543689 ACACTCTTCTATTATGGGACGGA 58.456 43.478 0.00 0.00 0.00 4.69
3833 3917 4.939052 ACACTCTTCTATTATGGGACGG 57.061 45.455 0.00 0.00 0.00 4.79
3834 3918 7.333423 TCAAAAACACTCTTCTATTATGGGACG 59.667 37.037 0.00 0.00 0.00 4.79
3835 3919 8.451748 GTCAAAAACACTCTTCTATTATGGGAC 58.548 37.037 0.00 0.00 0.00 4.46
3836 3920 8.160765 TGTCAAAAACACTCTTCTATTATGGGA 58.839 33.333 0.00 0.00 31.20 4.37
3837 3921 8.335532 TGTCAAAAACACTCTTCTATTATGGG 57.664 34.615 0.00 0.00 31.20 4.00
3876 3960 1.129437 GCGCACCAGCAAAAACAAAAA 59.871 42.857 0.30 0.00 42.27 1.94
3877 3961 0.723981 GCGCACCAGCAAAAACAAAA 59.276 45.000 0.30 0.00 42.27 2.44
3878 3962 0.108424 AGCGCACCAGCAAAAACAAA 60.108 45.000 11.47 0.00 42.27 2.83
3879 3963 0.805322 CAGCGCACCAGCAAAAACAA 60.805 50.000 11.47 0.00 42.27 2.83
3880 3964 1.226916 CAGCGCACCAGCAAAAACA 60.227 52.632 11.47 0.00 42.27 2.83
3881 3965 1.950630 CCAGCGCACCAGCAAAAAC 60.951 57.895 11.47 0.00 42.27 2.43
3882 3966 2.348605 GACCAGCGCACCAGCAAAAA 62.349 55.000 11.47 0.00 42.27 1.94
3883 3967 2.832661 ACCAGCGCACCAGCAAAA 60.833 55.556 11.47 0.00 42.27 2.44
3884 3968 3.286751 GACCAGCGCACCAGCAAA 61.287 61.111 11.47 0.00 42.27 3.68
3885 3969 3.772853 AAGACCAGCGCACCAGCAA 62.773 57.895 11.47 0.00 42.27 3.91
3886 3970 3.772853 AAAGACCAGCGCACCAGCA 62.773 57.895 11.47 0.00 42.27 4.41
3887 3971 2.980233 AAAGACCAGCGCACCAGC 60.980 61.111 11.47 0.00 37.42 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.