Multiple sequence alignment - TraesCS5A01G409400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G409400 chr5A 100.000 2644 0 0 1 2644 598899694 598902337 0.000000e+00 4883.0
1 TraesCS5A01G409400 chr5A 83.180 654 97 12 840 1486 42102237 42101590 1.050000e-163 586.0
2 TraesCS5A01G409400 chr5A 89.181 342 35 2 2304 2644 426474974 426474634 2.430000e-115 425.0
3 TraesCS5A01G409400 chr5A 87.955 357 30 7 428 771 42102983 42102627 2.450000e-110 409.0
4 TraesCS5A01G409400 chr5A 83.550 231 18 3 2059 2288 426475173 426474962 5.770000e-47 198.0
5 TraesCS5A01G409400 chr5D 90.303 1485 92 33 564 2010 480434829 480436299 0.000000e+00 1897.0
6 TraesCS5A01G409400 chr5D 82.862 636 98 9 840 1470 53923515 53922886 6.390000e-156 560.0
7 TraesCS5A01G409400 chr5D 89.766 342 33 2 2304 2644 538970517 538970857 1.120000e-118 436.0
8 TraesCS5A01G409400 chr5D 87.675 357 31 7 428 771 53924258 53923902 1.140000e-108 403.0
9 TraesCS5A01G409400 chr5D 91.772 158 12 1 2060 2216 538970319 538970476 4.430000e-53 219.0
10 TraesCS5A01G409400 chr5D 88.571 175 8 6 409 571 480430152 480430326 4.460000e-48 202.0
11 TraesCS5A01G409400 chr5D 90.411 73 7 0 2216 2288 538970457 538970529 2.170000e-16 97.1
12 TraesCS5A01G409400 chr4A 99.516 413 2 0 1 413 352498321 352497909 0.000000e+00 752.0
13 TraesCS5A01G409400 chr4A 99.756 409 1 0 1 409 154510782 154510374 0.000000e+00 750.0
14 TraesCS5A01G409400 chr7B 99.756 409 1 0 1 409 108532298 108531890 0.000000e+00 750.0
15 TraesCS5A01G409400 chr7B 83.007 153 24 2 2059 2209 63494762 63494610 1.280000e-28 137.0
16 TraesCS5A01G409400 chr1A 99.756 409 1 0 1 409 53879705 53880113 0.000000e+00 750.0
17 TraesCS5A01G409400 chr3A 99.512 410 2 0 1 410 453669996 453670405 0.000000e+00 747.0
18 TraesCS5A01G409400 chr3A 90.058 342 32 2 2304 2644 729317410 729317750 2.420000e-120 442.0
19 TraesCS5A01G409400 chr3A 90.058 342 31 3 2304 2644 703892648 703892309 8.690000e-120 440.0
20 TraesCS5A01G409400 chr3A 92.453 159 10 2 2059 2216 703892846 703892689 2.650000e-55 226.0
21 TraesCS5A01G409400 chr3A 82.684 231 20 4 2059 2288 729317211 729317422 1.250000e-43 187.0
22 TraesCS5A01G409400 chr3A 91.304 69 6 0 2216 2284 703892708 703892640 7.790000e-16 95.3
23 TraesCS5A01G409400 chr7A 98.780 410 4 1 1 409 608719030 608718621 0.000000e+00 728.0
24 TraesCS5A01G409400 chr7A 97.311 409 11 0 1 409 120973173 120972765 0.000000e+00 695.0
25 TraesCS5A01G409400 chr2B 98.780 410 4 1 1 409 458073816 458073407 0.000000e+00 728.0
26 TraesCS5A01G409400 chr2B 89.766 342 33 2 2304 2644 701784838 701784498 1.120000e-118 436.0
27 TraesCS5A01G409400 chr2B 84.513 452 46 16 410 842 25019448 25019002 2.430000e-115 425.0
28 TraesCS5A01G409400 chr2B 92.169 166 11 2 2053 2216 701785044 701784879 1.580000e-57 233.0
29 TraesCS5A01G409400 chr2B 92.105 76 6 0 1518 1593 25018074 25017999 1.000000e-19 108.0
30 TraesCS5A01G409400 chr2B 89.041 73 8 0 2216 2288 701784898 701784826 1.010000e-14 91.6
31 TraesCS5A01G409400 chr6B 98.289 409 7 0 1 409 77786798 77787206 0.000000e+00 717.0
32 TraesCS5A01G409400 chr6B 89.474 342 34 2 2304 2644 702204642 702204982 5.230000e-117 431.0
33 TraesCS5A01G409400 chr6B 80.000 180 16 5 2110 2288 702204494 702204654 5.980000e-22 115.0
34 TraesCS5A01G409400 chr5B 81.818 671 88 19 954 1593 56563758 56563091 1.390000e-147 532.0
35 TraesCS5A01G409400 chr5B 86.575 365 36 7 417 768 56564631 56564267 8.870000e-105 390.0
36 TraesCS5A01G409400 chr5B 81.875 160 23 6 2059 2214 490544397 490544240 2.140000e-26 130.0
37 TraesCS5A01G409400 chr2D 82.068 619 77 16 888 1487 13758100 13757497 5.080000e-137 497.0
38 TraesCS5A01G409400 chr2D 86.061 330 26 13 413 723 13758621 13758293 1.170000e-88 337.0
39 TraesCS5A01G409400 chr2D 91.358 81 6 1 1514 1593 13757385 13757305 2.780000e-20 110.0
40 TraesCS5A01G409400 chr4D 91.520 342 27 2 2304 2644 245261575 245261235 1.110000e-128 470.0
41 TraesCS5A01G409400 chr4D 82.008 239 22 6 2057 2294 245261776 245261558 1.620000e-42 183.0
42 TraesCS5A01G409400 chr1D 89.766 342 33 2 2304 2644 439090524 439090864 1.120000e-118 436.0
43 TraesCS5A01G409400 chr1D 82.251 231 21 3 2059 2288 439090325 439090536 5.810000e-42 182.0
44 TraesCS5A01G409400 chr3B 86.866 335 40 4 2305 2638 122700538 122700869 3.210000e-99 372.0
45 TraesCS5A01G409400 chr2A 85.928 334 24 12 412 723 15949665 15949333 4.220000e-88 335.0
46 TraesCS5A01G409400 chr2A 92.593 81 5 1 1514 1593 15948426 15948346 5.980000e-22 115.0
47 TraesCS5A01G409400 chr6D 80.000 370 40 12 2059 2415 116963763 116964111 2.630000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G409400 chr5A 598899694 598902337 2643 False 4883.000000 4883 100.000000 1 2644 1 chr5A.!!$F1 2643
1 TraesCS5A01G409400 chr5A 42101590 42102983 1393 True 497.500000 586 85.567500 428 1486 2 chr5A.!!$R1 1058
2 TraesCS5A01G409400 chr5A 426474634 426475173 539 True 311.500000 425 86.365500 2059 2644 2 chr5A.!!$R2 585
3 TraesCS5A01G409400 chr5D 480434829 480436299 1470 False 1897.000000 1897 90.303000 564 2010 1 chr5D.!!$F2 1446
4 TraesCS5A01G409400 chr5D 53922886 53924258 1372 True 481.500000 560 85.268500 428 1470 2 chr5D.!!$R1 1042
5 TraesCS5A01G409400 chr5D 538970319 538970857 538 False 250.700000 436 90.649667 2060 2644 3 chr5D.!!$F3 584
6 TraesCS5A01G409400 chr3A 729317211 729317750 539 False 314.500000 442 86.371000 2059 2644 2 chr3A.!!$F2 585
7 TraesCS5A01G409400 chr3A 703892309 703892846 537 True 253.766667 440 91.271667 2059 2644 3 chr3A.!!$R1 585
8 TraesCS5A01G409400 chr2B 25017999 25019448 1449 True 266.500000 425 88.309000 410 1593 2 chr2B.!!$R2 1183
9 TraesCS5A01G409400 chr2B 701784498 701785044 546 True 253.533333 436 90.325333 2053 2644 3 chr2B.!!$R3 591
10 TraesCS5A01G409400 chr5B 56563091 56564631 1540 True 461.000000 532 84.196500 417 1593 2 chr5B.!!$R2 1176
11 TraesCS5A01G409400 chr2D 13757305 13758621 1316 True 314.666667 497 86.495667 413 1593 3 chr2D.!!$R1 1180
12 TraesCS5A01G409400 chr4D 245261235 245261776 541 True 326.500000 470 86.764000 2057 2644 2 chr4D.!!$R1 587
13 TraesCS5A01G409400 chr1D 439090325 439090864 539 False 309.000000 436 86.008500 2059 2644 2 chr1D.!!$F1 585
14 TraesCS5A01G409400 chr2A 15948346 15949665 1319 True 225.000000 335 89.260500 412 1593 2 chr2A.!!$R1 1181

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
21 22 0.036732 TCAGACCTGGCACATTGTCC 59.963 55.0 0.0 0.0 39.74 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1755 2510 0.034896 TCAAAGAACCAGAGACGGGC 59.965 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.701663 CGTCAGACCTGGCACATT 57.298 55.556 2.39 0.00 38.20 2.71
18 19 2.165380 CGTCAGACCTGGCACATTG 58.835 57.895 2.39 0.00 38.20 2.82
19 20 0.603707 CGTCAGACCTGGCACATTGT 60.604 55.000 2.39 0.00 38.20 2.71
20 21 1.160137 GTCAGACCTGGCACATTGTC 58.840 55.000 0.00 0.00 39.37 3.18
21 22 0.036732 TCAGACCTGGCACATTGTCC 59.963 55.000 0.00 0.00 39.74 4.02
22 23 0.037303 CAGACCTGGCACATTGTCCT 59.963 55.000 0.00 0.00 39.74 3.85
23 24 0.773644 AGACCTGGCACATTGTCCTT 59.226 50.000 0.00 0.00 39.74 3.36
24 25 0.883833 GACCTGGCACATTGTCCTTG 59.116 55.000 0.00 2.16 38.20 3.61
25 26 0.478072 ACCTGGCACATTGTCCTTGA 59.522 50.000 0.00 0.00 38.20 3.02
26 27 1.076024 ACCTGGCACATTGTCCTTGAT 59.924 47.619 0.00 0.00 38.20 2.57
27 28 2.173519 CCTGGCACATTGTCCTTGATT 58.826 47.619 6.77 0.00 38.20 2.57
28 29 2.094390 CCTGGCACATTGTCCTTGATTG 60.094 50.000 6.77 0.00 38.20 2.67
29 30 1.894466 TGGCACATTGTCCTTGATTGG 59.106 47.619 6.77 0.00 0.00 3.16
30 31 1.895131 GGCACATTGTCCTTGATTGGT 59.105 47.619 0.00 0.00 0.00 3.67
31 32 2.299867 GGCACATTGTCCTTGATTGGTT 59.700 45.455 0.00 0.00 0.00 3.67
32 33 3.319755 GCACATTGTCCTTGATTGGTTG 58.680 45.455 0.00 0.00 0.00 3.77
33 34 3.005684 GCACATTGTCCTTGATTGGTTGA 59.994 43.478 0.00 0.00 0.00 3.18
34 35 4.322198 GCACATTGTCCTTGATTGGTTGAT 60.322 41.667 0.00 0.00 0.00 2.57
35 36 5.786311 CACATTGTCCTTGATTGGTTGATT 58.214 37.500 0.00 0.00 0.00 2.57
36 37 6.572119 GCACATTGTCCTTGATTGGTTGATTA 60.572 38.462 0.00 0.00 0.00 1.75
37 38 7.549839 CACATTGTCCTTGATTGGTTGATTAT 58.450 34.615 0.00 0.00 0.00 1.28
38 39 8.036575 CACATTGTCCTTGATTGGTTGATTATT 58.963 33.333 0.00 0.00 0.00 1.40
39 40 8.253113 ACATTGTCCTTGATTGGTTGATTATTC 58.747 33.333 0.00 0.00 0.00 1.75
40 41 6.773976 TGTCCTTGATTGGTTGATTATTCC 57.226 37.500 0.00 0.00 0.00 3.01
41 42 5.356751 TGTCCTTGATTGGTTGATTATTCCG 59.643 40.000 0.00 0.00 0.00 4.30
42 43 4.887071 TCCTTGATTGGTTGATTATTCCGG 59.113 41.667 0.00 0.00 0.00 5.14
43 44 4.644685 CCTTGATTGGTTGATTATTCCGGT 59.355 41.667 0.00 0.00 0.00 5.28
44 45 5.221048 CCTTGATTGGTTGATTATTCCGGTC 60.221 44.000 0.00 0.00 0.00 4.79
45 46 4.204012 TGATTGGTTGATTATTCCGGTCC 58.796 43.478 0.00 0.00 0.00 4.46
46 47 3.722908 TTGGTTGATTATTCCGGTCCA 57.277 42.857 0.00 0.00 0.00 4.02
47 48 3.722908 TGGTTGATTATTCCGGTCCAA 57.277 42.857 0.00 0.00 0.00 3.53
48 49 4.035612 TGGTTGATTATTCCGGTCCAAA 57.964 40.909 0.00 0.00 0.00 3.28
49 50 4.605183 TGGTTGATTATTCCGGTCCAAAT 58.395 39.130 0.00 0.00 0.00 2.32
50 51 4.642885 TGGTTGATTATTCCGGTCCAAATC 59.357 41.667 0.00 7.86 0.00 2.17
51 52 4.037565 GGTTGATTATTCCGGTCCAAATCC 59.962 45.833 0.00 0.00 0.00 3.01
52 53 3.827722 TGATTATTCCGGTCCAAATCCC 58.172 45.455 0.00 0.00 0.00 3.85
53 54 2.740506 TTATTCCGGTCCAAATCCCC 57.259 50.000 0.00 0.00 0.00 4.81
54 55 0.470766 TATTCCGGTCCAAATCCCCG 59.529 55.000 0.00 0.00 41.37 5.73
55 56 1.276140 ATTCCGGTCCAAATCCCCGA 61.276 55.000 0.00 0.00 44.41 5.14
56 57 1.276140 TTCCGGTCCAAATCCCCGAT 61.276 55.000 0.00 0.00 44.41 4.18
57 58 1.227853 CCGGTCCAAATCCCCGATC 60.228 63.158 0.00 0.00 44.41 3.69
58 59 1.524961 CGGTCCAAATCCCCGATCA 59.475 57.895 0.00 0.00 44.41 2.92
59 60 0.532862 CGGTCCAAATCCCCGATCAG 60.533 60.000 0.00 0.00 44.41 2.90
60 61 0.179018 GGTCCAAATCCCCGATCAGG 60.179 60.000 0.00 0.00 40.63 3.86
61 62 0.837272 GTCCAAATCCCCGATCAGGA 59.163 55.000 4.03 4.03 45.00 3.86
62 63 1.131638 TCCAAATCCCCGATCAGGAG 58.868 55.000 7.49 0.00 45.00 3.69
63 64 0.536006 CCAAATCCCCGATCAGGAGC 60.536 60.000 7.49 0.00 45.00 4.70
64 65 0.181114 CAAATCCCCGATCAGGAGCA 59.819 55.000 7.49 0.00 45.00 4.26
65 66 0.181350 AAATCCCCGATCAGGAGCAC 59.819 55.000 7.49 0.00 45.00 4.40
66 67 0.982852 AATCCCCGATCAGGAGCACA 60.983 55.000 7.49 0.00 45.00 4.57
67 68 1.690219 ATCCCCGATCAGGAGCACAC 61.690 60.000 7.49 0.00 45.00 3.82
68 69 2.202797 CCCGATCAGGAGCACACG 60.203 66.667 5.32 0.00 45.00 4.49
69 70 2.202797 CCGATCAGGAGCACACGG 60.203 66.667 0.00 0.00 45.00 4.94
70 71 2.573869 CGATCAGGAGCACACGGT 59.426 61.111 0.00 0.00 0.00 4.83
71 72 1.517257 CGATCAGGAGCACACGGTC 60.517 63.158 0.00 0.00 39.00 4.79
72 73 1.591703 GATCAGGAGCACACGGTCA 59.408 57.895 0.00 0.00 41.62 4.02
73 74 0.737715 GATCAGGAGCACACGGTCAC 60.738 60.000 0.00 0.00 41.62 3.67
75 76 3.991051 AGGAGCACACGGTCACGG 61.991 66.667 0.00 0.00 46.48 4.94
76 77 3.986006 GGAGCACACGGTCACGGA 61.986 66.667 0.00 0.00 46.48 4.69
77 78 2.430921 GAGCACACGGTCACGGAG 60.431 66.667 0.00 0.00 46.48 4.63
129 130 4.161295 CGCATCGGAAGGCCCTCA 62.161 66.667 3.19 0.00 0.00 3.86
130 131 2.272146 GCATCGGAAGGCCCTCAA 59.728 61.111 3.19 0.00 0.00 3.02
131 132 1.378514 GCATCGGAAGGCCCTCAAA 60.379 57.895 3.19 0.00 0.00 2.69
132 133 0.753111 GCATCGGAAGGCCCTCAAAT 60.753 55.000 3.19 0.00 0.00 2.32
133 134 1.312815 CATCGGAAGGCCCTCAAATC 58.687 55.000 3.19 0.00 0.00 2.17
134 135 0.183731 ATCGGAAGGCCCTCAAATCC 59.816 55.000 3.19 0.00 0.00 3.01
135 136 1.204786 TCGGAAGGCCCTCAAATCCA 61.205 55.000 3.19 0.00 0.00 3.41
136 137 0.106519 CGGAAGGCCCTCAAATCCAT 60.107 55.000 3.19 0.00 0.00 3.41
137 138 1.697284 GGAAGGCCCTCAAATCCATC 58.303 55.000 3.19 0.00 0.00 3.51
138 139 1.312815 GAAGGCCCTCAAATCCATCG 58.687 55.000 0.00 0.00 0.00 3.84
139 140 0.753111 AAGGCCCTCAAATCCATCGC 60.753 55.000 0.00 0.00 0.00 4.58
140 141 2.546494 GGCCCTCAAATCCATCGCG 61.546 63.158 0.00 0.00 0.00 5.87
141 142 3.025619 CCCTCAAATCCATCGCGC 58.974 61.111 0.00 0.00 0.00 6.86
142 143 1.524621 CCCTCAAATCCATCGCGCT 60.525 57.895 5.56 0.00 0.00 5.92
143 144 1.097547 CCCTCAAATCCATCGCGCTT 61.098 55.000 5.56 0.00 0.00 4.68
144 145 0.305922 CCTCAAATCCATCGCGCTTC 59.694 55.000 5.56 0.00 0.00 3.86
145 146 1.293924 CTCAAATCCATCGCGCTTCT 58.706 50.000 5.56 0.00 0.00 2.85
146 147 1.667724 CTCAAATCCATCGCGCTTCTT 59.332 47.619 5.56 0.00 0.00 2.52
147 148 1.398041 TCAAATCCATCGCGCTTCTTG 59.602 47.619 5.56 0.00 0.00 3.02
148 149 1.131126 CAAATCCATCGCGCTTCTTGT 59.869 47.619 5.56 0.00 0.00 3.16
149 150 0.729116 AATCCATCGCGCTTCTTGTG 59.271 50.000 5.56 0.00 0.00 3.33
155 156 3.741476 GCGCTTCTTGTGCCCTGG 61.741 66.667 0.00 0.00 45.73 4.45
156 157 2.032528 CGCTTCTTGTGCCCTGGA 59.967 61.111 0.00 0.00 0.00 3.86
157 158 1.377725 CGCTTCTTGTGCCCTGGAT 60.378 57.895 0.00 0.00 0.00 3.41
158 159 1.651240 CGCTTCTTGTGCCCTGGATG 61.651 60.000 0.00 0.00 0.00 3.51
159 160 1.941999 GCTTCTTGTGCCCTGGATGC 61.942 60.000 0.00 0.00 0.00 3.91
160 161 0.323178 CTTCTTGTGCCCTGGATGCT 60.323 55.000 0.00 0.00 0.00 3.79
161 162 0.322816 TTCTTGTGCCCTGGATGCTC 60.323 55.000 0.00 0.00 0.00 4.26
162 163 1.203441 TCTTGTGCCCTGGATGCTCT 61.203 55.000 0.00 0.00 0.00 4.09
163 164 1.001764 TTGTGCCCTGGATGCTCTG 60.002 57.895 0.00 0.00 0.00 3.35
164 165 2.124403 GTGCCCTGGATGCTCTGG 60.124 66.667 0.00 0.00 0.00 3.86
165 166 2.285592 TGCCCTGGATGCTCTGGA 60.286 61.111 0.00 0.00 0.00 3.86
166 167 1.924939 TGCCCTGGATGCTCTGGAA 60.925 57.895 0.00 0.00 0.00 3.53
167 168 1.153005 GCCCTGGATGCTCTGGAAG 60.153 63.158 0.00 0.00 0.00 3.46
177 178 2.832931 CTCTGGAAGCACAGGAACG 58.167 57.895 3.70 0.00 38.98 3.95
178 179 1.294659 CTCTGGAAGCACAGGAACGC 61.295 60.000 3.70 0.00 38.98 4.84
179 180 2.281484 TGGAAGCACAGGAACGCC 60.281 61.111 0.00 0.00 0.00 5.68
189 190 1.006102 AGGAACGCCTGTGTCTTCG 60.006 57.895 0.00 0.00 44.90 3.79
190 191 1.006571 GGAACGCCTGTGTCTTCGA 60.007 57.895 0.00 0.00 0.00 3.71
191 192 1.282930 GGAACGCCTGTGTCTTCGAC 61.283 60.000 0.00 0.00 0.00 4.20
192 193 0.596600 GAACGCCTGTGTCTTCGACA 60.597 55.000 0.00 0.00 40.50 4.35
193 194 0.179094 AACGCCTGTGTCTTCGACAA 60.179 50.000 0.00 0.00 44.49 3.18
194 195 0.874607 ACGCCTGTGTCTTCGACAAC 60.875 55.000 0.00 0.00 44.49 3.32
195 196 1.853319 GCCTGTGTCTTCGACAACG 59.147 57.895 0.00 0.00 44.49 4.10
196 197 1.853319 CCTGTGTCTTCGACAACGC 59.147 57.895 0.00 3.55 44.49 4.84
197 198 1.557443 CCTGTGTCTTCGACAACGCC 61.557 60.000 7.29 0.00 44.49 5.68
198 199 0.874175 CTGTGTCTTCGACAACGCCA 60.874 55.000 7.29 0.00 44.49 5.69
199 200 1.149361 TGTGTCTTCGACAACGCCAC 61.149 55.000 7.29 0.00 44.49 5.01
200 201 1.947146 TGTCTTCGACAACGCCACG 60.947 57.895 0.00 0.00 39.78 4.94
201 202 3.033764 TCTTCGACAACGCCACGC 61.034 61.111 0.00 0.00 39.58 5.34
202 203 4.072088 CTTCGACAACGCCACGCC 62.072 66.667 0.00 0.00 39.58 5.68
203 204 4.893601 TTCGACAACGCCACGCCA 62.894 61.111 0.00 0.00 39.58 5.69
204 205 4.673298 TCGACAACGCCACGCCAT 62.673 61.111 0.00 0.00 39.58 4.40
205 206 4.147322 CGACAACGCCACGCCATC 62.147 66.667 0.00 0.00 0.00 3.51
206 207 3.799755 GACAACGCCACGCCATCC 61.800 66.667 0.00 0.00 0.00 3.51
207 208 4.634703 ACAACGCCACGCCATCCA 62.635 61.111 0.00 0.00 0.00 3.41
208 209 3.133464 CAACGCCACGCCATCCAT 61.133 61.111 0.00 0.00 0.00 3.41
209 210 2.824041 AACGCCACGCCATCCATC 60.824 61.111 0.00 0.00 0.00 3.51
211 212 4.889856 CGCCACGCCATCCATCGA 62.890 66.667 0.00 0.00 0.00 3.59
212 213 2.513666 GCCACGCCATCCATCGAA 60.514 61.111 0.00 0.00 0.00 3.71
213 214 1.893808 GCCACGCCATCCATCGAAT 60.894 57.895 0.00 0.00 0.00 3.34
214 215 1.845809 GCCACGCCATCCATCGAATC 61.846 60.000 0.00 0.00 0.00 2.52
215 216 0.532640 CCACGCCATCCATCGAATCA 60.533 55.000 0.00 0.00 0.00 2.57
216 217 0.583438 CACGCCATCCATCGAATCAC 59.417 55.000 0.00 0.00 0.00 3.06
217 218 0.465705 ACGCCATCCATCGAATCACT 59.534 50.000 0.00 0.00 0.00 3.41
218 219 1.686587 ACGCCATCCATCGAATCACTA 59.313 47.619 0.00 0.00 0.00 2.74
219 220 2.288457 ACGCCATCCATCGAATCACTAG 60.288 50.000 0.00 0.00 0.00 2.57
220 221 2.288457 CGCCATCCATCGAATCACTAGT 60.288 50.000 0.00 0.00 0.00 2.57
221 222 3.062763 GCCATCCATCGAATCACTAGTG 58.937 50.000 17.17 17.17 0.00 2.74
222 223 3.657634 CCATCCATCGAATCACTAGTGG 58.342 50.000 22.48 6.77 0.00 4.00
223 224 3.070159 CCATCCATCGAATCACTAGTGGT 59.930 47.826 22.48 13.58 0.00 4.16
224 225 4.443457 CCATCCATCGAATCACTAGTGGTT 60.443 45.833 21.32 21.32 36.46 3.67
225 226 5.221441 CCATCCATCGAATCACTAGTGGTTA 60.221 44.000 21.21 7.57 33.38 2.85
226 227 5.515797 TCCATCGAATCACTAGTGGTTAG 57.484 43.478 21.21 20.33 33.38 2.34
227 228 4.341235 TCCATCGAATCACTAGTGGTTAGG 59.659 45.833 21.21 18.62 33.38 2.69
228 229 4.341235 CCATCGAATCACTAGTGGTTAGGA 59.659 45.833 21.21 19.90 33.38 2.94
229 230 5.011125 CCATCGAATCACTAGTGGTTAGGAT 59.989 44.000 21.21 21.07 33.38 3.24
230 231 5.769484 TCGAATCACTAGTGGTTAGGATC 57.231 43.478 21.21 7.95 33.38 3.36
231 232 5.198207 TCGAATCACTAGTGGTTAGGATCA 58.802 41.667 21.21 2.92 33.38 2.92
232 233 5.655090 TCGAATCACTAGTGGTTAGGATCAA 59.345 40.000 21.21 2.55 33.38 2.57
233 234 5.980116 CGAATCACTAGTGGTTAGGATCAAG 59.020 44.000 21.21 2.80 33.38 3.02
234 235 5.878406 ATCACTAGTGGTTAGGATCAAGG 57.122 43.478 22.48 0.00 33.42 3.61
235 236 4.942944 TCACTAGTGGTTAGGATCAAGGA 58.057 43.478 22.48 0.00 33.42 3.36
236 237 4.710375 TCACTAGTGGTTAGGATCAAGGAC 59.290 45.833 22.48 0.00 33.42 3.85
237 238 3.700038 ACTAGTGGTTAGGATCAAGGACG 59.300 47.826 0.00 0.00 33.42 4.79
238 239 2.816411 AGTGGTTAGGATCAAGGACGA 58.184 47.619 0.00 0.00 0.00 4.20
239 240 2.761208 AGTGGTTAGGATCAAGGACGAG 59.239 50.000 0.00 0.00 0.00 4.18
240 241 2.108168 TGGTTAGGATCAAGGACGAGG 58.892 52.381 0.00 0.00 0.00 4.63
241 242 1.202545 GGTTAGGATCAAGGACGAGGC 60.203 57.143 0.00 0.00 0.00 4.70
242 243 1.120530 TTAGGATCAAGGACGAGGCC 58.879 55.000 0.00 0.00 0.00 5.19
243 244 0.759436 TAGGATCAAGGACGAGGCCC 60.759 60.000 0.00 0.00 0.00 5.80
244 245 2.107141 GATCAAGGACGAGGCCCG 59.893 66.667 11.48 11.48 45.44 6.13
245 246 3.447025 GATCAAGGACGAGGCCCGG 62.447 68.421 16.44 0.00 43.93 5.73
247 248 4.760047 CAAGGACGAGGCCCGGTG 62.760 72.222 16.44 6.55 43.93 4.94
258 259 2.672996 CCCGGTGTTGGGCTGAAG 60.673 66.667 0.00 0.00 43.70 3.02
259 260 3.365265 CCGGTGTTGGGCTGAAGC 61.365 66.667 0.00 0.00 41.14 3.86
260 261 2.594303 CGGTGTTGGGCTGAAGCA 60.594 61.111 4.43 0.00 44.36 3.91
261 262 2.620112 CGGTGTTGGGCTGAAGCAG 61.620 63.158 4.43 0.00 44.36 4.24
262 263 2.270986 GGTGTTGGGCTGAAGCAGG 61.271 63.158 4.43 0.00 44.36 4.85
263 264 1.228245 GTGTTGGGCTGAAGCAGGA 60.228 57.895 4.43 0.00 44.36 3.86
264 265 1.073722 TGTTGGGCTGAAGCAGGAG 59.926 57.895 4.43 0.00 44.36 3.69
265 266 2.034687 TTGGGCTGAAGCAGGAGC 59.965 61.111 4.43 0.00 44.36 4.70
269 270 2.438075 GCTGAAGCAGGAGCCCAG 60.438 66.667 0.00 0.00 43.56 4.45
270 271 2.271497 CTGAAGCAGGAGCCCAGG 59.729 66.667 0.00 0.00 43.56 4.45
271 272 3.333219 TGAAGCAGGAGCCCAGGG 61.333 66.667 0.00 0.00 43.56 4.45
272 273 3.011517 GAAGCAGGAGCCCAGGGA 61.012 66.667 10.89 0.00 43.56 4.20
273 274 3.334054 AAGCAGGAGCCCAGGGAC 61.334 66.667 10.89 1.50 43.56 4.46
274 275 3.880033 AAGCAGGAGCCCAGGGACT 62.880 63.158 10.89 5.80 43.56 3.85
275 276 3.334054 GCAGGAGCCCAGGGACTT 61.334 66.667 10.89 0.00 31.25 3.01
276 277 2.993853 CAGGAGCCCAGGGACTTC 59.006 66.667 10.89 4.73 34.60 3.01
277 278 2.685380 AGGAGCCCAGGGACTTCG 60.685 66.667 10.89 0.00 34.60 3.79
278 279 3.787001 GGAGCCCAGGGACTTCGG 61.787 72.222 10.89 0.00 34.60 4.30
279 280 3.787001 GAGCCCAGGGACTTCGGG 61.787 72.222 10.89 0.00 43.42 5.14
280 281 4.658786 AGCCCAGGGACTTCGGGT 62.659 66.667 10.89 0.00 42.44 5.28
281 282 3.647771 GCCCAGGGACTTCGGGTT 61.648 66.667 10.89 0.00 42.44 4.11
282 283 2.351276 CCCAGGGACTTCGGGTTG 59.649 66.667 0.00 0.00 34.60 3.77
283 284 2.526046 CCCAGGGACTTCGGGTTGT 61.526 63.158 0.00 0.00 34.60 3.32
284 285 1.454539 CCAGGGACTTCGGGTTGTT 59.545 57.895 0.00 0.00 34.60 2.83
285 286 0.605589 CCAGGGACTTCGGGTTGTTC 60.606 60.000 0.00 0.00 34.60 3.18
286 287 0.396811 CAGGGACTTCGGGTTGTTCT 59.603 55.000 0.00 0.00 34.60 3.01
287 288 0.396811 AGGGACTTCGGGTTGTTCTG 59.603 55.000 0.00 0.00 27.25 3.02
288 289 1.235281 GGGACTTCGGGTTGTTCTGC 61.235 60.000 0.00 0.00 0.00 4.26
289 290 1.235281 GGACTTCGGGTTGTTCTGCC 61.235 60.000 0.00 0.00 0.00 4.85
290 291 1.228154 ACTTCGGGTTGTTCTGCCC 60.228 57.895 0.00 0.00 41.45 5.36
291 292 1.228124 CTTCGGGTTGTTCTGCCCA 60.228 57.895 0.00 0.00 45.07 5.36
292 293 1.515521 CTTCGGGTTGTTCTGCCCAC 61.516 60.000 0.00 0.00 45.07 4.61
293 294 2.203280 CGGGTTGTTCTGCCCACA 60.203 61.111 0.00 0.00 45.07 4.17
294 295 1.826054 CGGGTTGTTCTGCCCACAA 60.826 57.895 0.00 0.00 45.07 3.33
297 298 2.807247 GTTGTTCTGCCCACAACCT 58.193 52.632 10.38 0.00 45.62 3.50
298 299 0.385390 GTTGTTCTGCCCACAACCTG 59.615 55.000 10.38 0.00 45.62 4.00
299 300 0.754957 TTGTTCTGCCCACAACCTGG 60.755 55.000 0.00 0.00 40.26 4.45
306 307 4.743018 CCACAACCTGGGATGTCC 57.257 61.111 0.00 0.00 36.18 4.02
307 308 1.767036 CCACAACCTGGGATGTCCA 59.233 57.895 0.00 0.00 44.79 4.02
308 309 0.609131 CCACAACCTGGGATGTCCAC 60.609 60.000 0.00 0.00 41.46 4.02
309 310 0.401738 CACAACCTGGGATGTCCACT 59.598 55.000 0.00 0.00 41.46 4.00
310 311 0.401738 ACAACCTGGGATGTCCACTG 59.598 55.000 0.00 0.00 41.46 3.66
311 312 0.692476 CAACCTGGGATGTCCACTGA 59.308 55.000 0.00 0.00 41.46 3.41
312 313 1.283029 CAACCTGGGATGTCCACTGAT 59.717 52.381 0.00 0.00 41.46 2.90
313 314 1.673767 ACCTGGGATGTCCACTGATT 58.326 50.000 0.00 0.00 41.46 2.57
314 315 1.995542 ACCTGGGATGTCCACTGATTT 59.004 47.619 0.00 0.00 41.46 2.17
315 316 2.379907 ACCTGGGATGTCCACTGATTTT 59.620 45.455 0.00 0.00 41.46 1.82
316 317 2.756760 CCTGGGATGTCCACTGATTTTG 59.243 50.000 0.86 0.00 41.46 2.44
317 318 3.424703 CTGGGATGTCCACTGATTTTGT 58.575 45.455 0.86 0.00 41.46 2.83
318 319 3.156293 TGGGATGTCCACTGATTTTGTG 58.844 45.455 0.86 0.00 41.46 3.33
319 320 2.094545 GGGATGTCCACTGATTTTGTGC 60.095 50.000 0.86 0.00 37.91 4.57
320 321 2.821969 GGATGTCCACTGATTTTGTGCT 59.178 45.455 0.00 0.00 34.38 4.40
321 322 3.256631 GGATGTCCACTGATTTTGTGCTT 59.743 43.478 0.00 0.00 34.38 3.91
322 323 4.262164 GGATGTCCACTGATTTTGTGCTTT 60.262 41.667 0.00 0.00 34.38 3.51
323 324 4.734398 TGTCCACTGATTTTGTGCTTTT 57.266 36.364 0.00 0.00 34.38 2.27
324 325 4.681744 TGTCCACTGATTTTGTGCTTTTC 58.318 39.130 0.00 0.00 34.38 2.29
325 326 4.402155 TGTCCACTGATTTTGTGCTTTTCT 59.598 37.500 0.00 0.00 34.38 2.52
326 327 5.105392 TGTCCACTGATTTTGTGCTTTTCTT 60.105 36.000 0.00 0.00 34.38 2.52
327 328 5.812127 GTCCACTGATTTTGTGCTTTTCTTT 59.188 36.000 0.00 0.00 34.38 2.52
328 329 5.811613 TCCACTGATTTTGTGCTTTTCTTTG 59.188 36.000 0.00 0.00 34.38 2.77
329 330 5.581874 CCACTGATTTTGTGCTTTTCTTTGT 59.418 36.000 0.00 0.00 34.38 2.83
330 331 6.756074 CCACTGATTTTGTGCTTTTCTTTGTA 59.244 34.615 0.00 0.00 34.38 2.41
331 332 7.254084 CCACTGATTTTGTGCTTTTCTTTGTAC 60.254 37.037 0.00 0.00 34.38 2.90
332 333 7.489113 CACTGATTTTGTGCTTTTCTTTGTACT 59.511 33.333 0.00 0.00 0.00 2.73
333 334 7.489113 ACTGATTTTGTGCTTTTCTTTGTACTG 59.511 33.333 0.00 0.00 0.00 2.74
334 335 6.255453 TGATTTTGTGCTTTTCTTTGTACTGC 59.745 34.615 0.00 0.00 0.00 4.40
335 336 4.981806 TTGTGCTTTTCTTTGTACTGCT 57.018 36.364 0.00 0.00 0.00 4.24
336 337 4.552166 TGTGCTTTTCTTTGTACTGCTC 57.448 40.909 0.00 0.00 0.00 4.26
337 338 3.944650 TGTGCTTTTCTTTGTACTGCTCA 59.055 39.130 0.00 0.00 0.00 4.26
338 339 4.201910 TGTGCTTTTCTTTGTACTGCTCAC 60.202 41.667 0.00 0.00 0.00 3.51
339 340 3.315191 TGCTTTTCTTTGTACTGCTCACC 59.685 43.478 0.00 0.00 0.00 4.02
340 341 3.565902 GCTTTTCTTTGTACTGCTCACCT 59.434 43.478 0.00 0.00 0.00 4.00
341 342 4.319839 GCTTTTCTTTGTACTGCTCACCTC 60.320 45.833 0.00 0.00 0.00 3.85
342 343 3.402628 TTCTTTGTACTGCTCACCTCC 57.597 47.619 0.00 0.00 0.00 4.30
343 344 2.609747 TCTTTGTACTGCTCACCTCCT 58.390 47.619 0.00 0.00 0.00 3.69
344 345 3.774734 TCTTTGTACTGCTCACCTCCTA 58.225 45.455 0.00 0.00 0.00 2.94
345 346 3.764434 TCTTTGTACTGCTCACCTCCTAG 59.236 47.826 0.00 0.00 0.00 3.02
346 347 2.145397 TGTACTGCTCACCTCCTAGG 57.855 55.000 0.82 0.82 42.49 3.02
347 348 1.639108 TGTACTGCTCACCTCCTAGGA 59.361 52.381 11.98 11.98 37.67 2.94
348 349 2.303175 GTACTGCTCACCTCCTAGGAG 58.697 57.143 29.27 29.27 37.67 3.69
360 361 3.502356 CTCCTAGGAGGATTGGTCTACC 58.498 54.545 28.68 0.00 44.81 3.18
361 362 3.140143 TCCTAGGAGGATTGGTCTACCT 58.860 50.000 7.62 0.00 40.06 3.08
362 363 3.536434 TCCTAGGAGGATTGGTCTACCTT 59.464 47.826 7.62 0.00 40.06 3.50
363 364 4.015541 TCCTAGGAGGATTGGTCTACCTTT 60.016 45.833 7.62 0.00 40.06 3.11
364 365 4.722279 CCTAGGAGGATTGGTCTACCTTTT 59.278 45.833 1.05 0.00 37.67 2.27
365 366 4.846168 AGGAGGATTGGTCTACCTTTTC 57.154 45.455 0.02 0.00 36.82 2.29
366 367 3.523972 AGGAGGATTGGTCTACCTTTTCC 59.476 47.826 0.02 4.44 36.82 3.13
367 368 3.265995 GGAGGATTGGTCTACCTTTTCCA 59.734 47.826 14.11 0.00 36.82 3.53
368 369 4.079730 GGAGGATTGGTCTACCTTTTCCAT 60.080 45.833 14.11 4.20 36.82 3.41
369 370 4.860022 AGGATTGGTCTACCTTTTCCATG 58.140 43.478 14.11 0.00 36.82 3.66
370 371 4.540099 AGGATTGGTCTACCTTTTCCATGA 59.460 41.667 14.11 0.00 36.82 3.07
371 372 5.015178 AGGATTGGTCTACCTTTTCCATGAA 59.985 40.000 14.11 0.00 36.82 2.57
372 373 5.714806 GGATTGGTCTACCTTTTCCATGAAA 59.285 40.000 0.00 0.00 36.82 2.69
373 374 6.381133 GGATTGGTCTACCTTTTCCATGAAAT 59.619 38.462 0.00 0.00 36.82 2.17
374 375 6.588719 TTGGTCTACCTTTTCCATGAAATG 57.411 37.500 0.00 0.00 39.70 2.32
375 376 5.886609 TGGTCTACCTTTTCCATGAAATGA 58.113 37.500 0.00 0.00 41.51 2.57
376 377 6.310941 TGGTCTACCTTTTCCATGAAATGAA 58.689 36.000 0.00 0.00 41.51 2.57
377 378 6.780031 TGGTCTACCTTTTCCATGAAATGAAA 59.220 34.615 0.00 0.00 41.51 2.69
378 379 7.454380 TGGTCTACCTTTTCCATGAAATGAAAT 59.546 33.333 0.00 0.00 41.51 2.17
389 390 5.750352 ATGAAATGAAATGCAAAGGTCCT 57.250 34.783 0.00 0.00 0.00 3.85
390 391 5.549742 TGAAATGAAATGCAAAGGTCCTT 57.450 34.783 0.00 0.00 0.00 3.36
391 392 5.927819 TGAAATGAAATGCAAAGGTCCTTT 58.072 33.333 11.33 11.33 33.58 3.11
400 401 3.436700 CAAAGGTCCTTTGCGTTTTCT 57.563 42.857 27.36 0.00 43.07 2.52
401 402 3.372060 CAAAGGTCCTTTGCGTTTTCTC 58.628 45.455 27.36 0.00 43.07 2.87
402 403 1.226746 AGGTCCTTTGCGTTTTCTCG 58.773 50.000 0.00 0.00 0.00 4.04
403 404 1.202604 AGGTCCTTTGCGTTTTCTCGA 60.203 47.619 0.00 0.00 0.00 4.04
404 405 1.600485 GGTCCTTTGCGTTTTCTCGAA 59.400 47.619 0.00 0.00 0.00 3.71
405 406 2.032426 GGTCCTTTGCGTTTTCTCGAAA 59.968 45.455 0.00 0.00 0.00 3.46
406 407 3.487879 GGTCCTTTGCGTTTTCTCGAAAA 60.488 43.478 0.93 0.93 36.21 2.29
407 408 4.099824 GTCCTTTGCGTTTTCTCGAAAAA 58.900 39.130 6.41 0.00 41.37 1.94
426 427 1.668419 AAGTTATGATCTGGCGGTGC 58.332 50.000 0.00 0.00 0.00 5.01
448 449 3.077484 ACATGCAATTCACTGCTAGGT 57.923 42.857 0.00 0.00 43.07 3.08
496 509 4.003648 AGAATTGGTTAGGACAGCTTTCG 58.996 43.478 0.00 0.00 0.00 3.46
734 757 3.192422 TGGGCAGACCATTGTATTTTTCG 59.808 43.478 0.00 0.00 46.80 3.46
951 1393 7.229506 GGGTTTTCTCAAGATATATGGTTCCAG 59.770 40.741 0.00 0.00 0.00 3.86
1404 1983 1.065551 GCCGCATAAGGTAAAGCTTGG 59.934 52.381 0.00 0.00 0.00 3.61
1405 1984 2.639065 CCGCATAAGGTAAAGCTTGGA 58.361 47.619 0.00 0.00 0.00 3.53
1452 2052 7.672983 TGTTCTGGTTTAGCTAAGATTTGAG 57.327 36.000 6.24 0.00 0.00 3.02
1480 2082 4.681744 TGTCATCCTTTTTGTTGCTTGTC 58.318 39.130 0.00 0.00 0.00 3.18
1492 2145 6.737254 TTGTTGCTTGTCTATAGCCTTTAC 57.263 37.500 0.00 0.00 37.85 2.01
1596 2351 3.243359 AGGCCACTCCTTCATTTTTGA 57.757 42.857 5.01 0.00 44.75 2.69
1626 2381 0.810648 AAATACGTGCACATGCCTGG 59.189 50.000 18.64 0.40 41.18 4.45
1630 2385 2.267351 CGTGCACATGCCTGGGAAA 61.267 57.895 18.64 0.00 41.18 3.13
1632 2387 0.609662 GTGCACATGCCTGGGAAATT 59.390 50.000 13.17 0.00 41.18 1.82
1633 2388 0.896923 TGCACATGCCTGGGAAATTC 59.103 50.000 0.49 0.00 41.18 2.17
1637 2392 1.027357 CATGCCTGGGAAATTCGAGG 58.973 55.000 0.00 5.56 35.99 4.63
1639 2394 2.472909 GCCTGGGAAATTCGAGGCG 61.473 63.158 15.87 0.00 45.88 5.52
1640 2395 1.220749 CCTGGGAAATTCGAGGCGA 59.779 57.895 0.00 0.00 0.00 5.54
1641 2396 0.179045 CCTGGGAAATTCGAGGCGAT 60.179 55.000 0.00 0.00 35.23 4.58
1642 2397 0.940126 CTGGGAAATTCGAGGCGATG 59.060 55.000 0.00 0.00 35.23 3.84
1643 2398 0.539518 TGGGAAATTCGAGGCGATGA 59.460 50.000 0.00 0.00 35.23 2.92
1644 2399 1.140852 TGGGAAATTCGAGGCGATGAT 59.859 47.619 0.00 0.00 35.23 2.45
1645 2400 1.801178 GGGAAATTCGAGGCGATGATC 59.199 52.381 0.00 0.00 35.23 2.92
1646 2401 1.801178 GGAAATTCGAGGCGATGATCC 59.199 52.381 0.00 0.00 35.23 3.36
1647 2402 2.483876 GAAATTCGAGGCGATGATCCA 58.516 47.619 0.00 0.00 35.23 3.41
1653 2408 2.356793 GGCGATGATCCAGCCTCG 60.357 66.667 13.81 5.48 46.83 4.63
1659 2414 0.602106 ATGATCCAGCCTCGCATTCG 60.602 55.000 0.00 0.00 0.00 3.34
1718 2473 2.288640 GCAAAAGGATGCTGAAGTGCTT 60.289 45.455 0.00 0.00 43.06 3.91
1719 2474 3.801293 GCAAAAGGATGCTGAAGTGCTTT 60.801 43.478 0.00 0.00 43.06 3.51
1748 2503 5.071250 TCTGTCTTCCTGGTTTGTAGCTTAA 59.929 40.000 0.00 0.00 0.00 1.85
1749 2504 5.686753 TGTCTTCCTGGTTTGTAGCTTAAA 58.313 37.500 0.00 0.00 0.00 1.52
1750 2505 5.763204 TGTCTTCCTGGTTTGTAGCTTAAAG 59.237 40.000 0.00 0.00 0.00 1.85
1751 2506 5.181433 GTCTTCCTGGTTTGTAGCTTAAAGG 59.819 44.000 0.00 0.00 0.00 3.11
1752 2507 4.986054 TCCTGGTTTGTAGCTTAAAGGA 57.014 40.909 0.00 0.00 0.00 3.36
1753 2508 4.906618 TCCTGGTTTGTAGCTTAAAGGAG 58.093 43.478 0.00 0.00 0.00 3.69
1754 2509 3.440522 CCTGGTTTGTAGCTTAAAGGAGC 59.559 47.826 0.00 0.00 43.02 4.70
1770 2544 4.070552 GCGCCCGTCTCTGGTTCT 62.071 66.667 0.00 0.00 0.00 3.01
1773 2547 1.291877 CGCCCGTCTCTGGTTCTTTG 61.292 60.000 0.00 0.00 0.00 2.77
1774 2548 0.034896 GCCCGTCTCTGGTTCTTTGA 59.965 55.000 0.00 0.00 0.00 2.69
1775 2549 1.339151 GCCCGTCTCTGGTTCTTTGAT 60.339 52.381 0.00 0.00 0.00 2.57
1776 2550 2.876079 GCCCGTCTCTGGTTCTTTGATT 60.876 50.000 0.00 0.00 0.00 2.57
1778 2552 3.821033 CCCGTCTCTGGTTCTTTGATTTT 59.179 43.478 0.00 0.00 0.00 1.82
1782 2556 5.466728 CGTCTCTGGTTCTTTGATTTTGAGA 59.533 40.000 0.00 0.00 0.00 3.27
1783 2557 6.148480 CGTCTCTGGTTCTTTGATTTTGAGAT 59.852 38.462 0.00 0.00 31.97 2.75
1784 2558 7.331934 CGTCTCTGGTTCTTTGATTTTGAGATA 59.668 37.037 0.00 0.00 31.97 1.98
1785 2559 8.663911 GTCTCTGGTTCTTTGATTTTGAGATAG 58.336 37.037 0.00 0.00 31.97 2.08
1788 2562 7.667219 TCTGGTTCTTTGATTTTGAGATAGCTT 59.333 33.333 0.00 0.00 0.00 3.74
1790 2564 8.730680 TGGTTCTTTGATTTTGAGATAGCTTAC 58.269 33.333 0.00 0.00 0.00 2.34
1791 2565 8.184848 GGTTCTTTGATTTTGAGATAGCTTACC 58.815 37.037 0.00 0.00 0.00 2.85
1792 2566 8.730680 GTTCTTTGATTTTGAGATAGCTTACCA 58.269 33.333 0.00 0.00 0.00 3.25
1795 2569 6.313519 TGATTTTGAGATAGCTTACCACCT 57.686 37.500 0.00 0.00 0.00 4.00
1796 2570 7.432148 TGATTTTGAGATAGCTTACCACCTA 57.568 36.000 0.00 0.00 0.00 3.08
1797 2571 8.034313 TGATTTTGAGATAGCTTACCACCTAT 57.966 34.615 0.00 0.00 0.00 2.57
1798 2572 7.933577 TGATTTTGAGATAGCTTACCACCTATG 59.066 37.037 0.00 0.00 0.00 2.23
1799 2573 4.873746 TGAGATAGCTTACCACCTATGC 57.126 45.455 0.00 0.00 0.00 3.14
1800 2574 3.578716 TGAGATAGCTTACCACCTATGCC 59.421 47.826 0.00 0.00 0.00 4.40
1801 2575 3.578716 GAGATAGCTTACCACCTATGCCA 59.421 47.826 0.00 0.00 0.00 4.92
1802 2576 4.171234 AGATAGCTTACCACCTATGCCAT 58.829 43.478 0.00 0.00 0.00 4.40
1803 2577 2.645838 AGCTTACCACCTATGCCATG 57.354 50.000 0.00 0.00 0.00 3.66
1804 2578 2.126882 AGCTTACCACCTATGCCATGA 58.873 47.619 0.00 0.00 0.00 3.07
1805 2579 2.509548 AGCTTACCACCTATGCCATGAA 59.490 45.455 0.00 0.00 0.00 2.57
1806 2580 3.053693 AGCTTACCACCTATGCCATGAAA 60.054 43.478 0.00 0.00 0.00 2.69
1807 2581 3.316308 GCTTACCACCTATGCCATGAAAG 59.684 47.826 0.00 0.00 0.00 2.62
1847 2621 2.687935 ACAACTTGTGTGCGATTCCTTT 59.312 40.909 0.00 0.00 39.72 3.11
1853 2627 2.035704 TGTGTGCGATTCCTTTGCAAAT 59.964 40.909 13.23 0.00 46.41 2.32
1874 2648 3.857052 TGTCTTGTACCATTTCGGCTAG 58.143 45.455 0.00 0.00 39.03 3.42
1969 2749 7.624360 TGAGCAAGTTTATTAACATAGGTGG 57.376 36.000 0.00 0.00 36.70 4.61
2020 2800 6.734104 AAAAATAACAGTTGCTGCAAAACA 57.266 29.167 17.80 1.42 34.37 2.83
2021 2801 6.734104 AAAATAACAGTTGCTGCAAAACAA 57.266 29.167 17.80 2.52 34.37 2.83
2022 2802 6.734104 AAATAACAGTTGCTGCAAAACAAA 57.266 29.167 17.80 3.62 34.37 2.83
2023 2803 6.734104 AATAACAGTTGCTGCAAAACAAAA 57.266 29.167 17.80 1.99 34.37 2.44
2024 2804 6.923928 ATAACAGTTGCTGCAAAACAAAAT 57.076 29.167 17.80 4.30 34.37 1.82
2025 2805 8.430801 AATAACAGTTGCTGCAAAACAAAATA 57.569 26.923 17.80 5.00 34.37 1.40
2026 2806 6.734104 AACAGTTGCTGCAAAACAAAATAA 57.266 29.167 17.80 0.00 34.37 1.40
2027 2807 6.734104 ACAGTTGCTGCAAAACAAAATAAA 57.266 29.167 17.80 0.00 34.37 1.40
2028 2808 7.138692 ACAGTTGCTGCAAAACAAAATAAAA 57.861 28.000 17.80 0.00 34.37 1.52
2029 2809 7.588512 ACAGTTGCTGCAAAACAAAATAAAAA 58.411 26.923 17.80 0.00 34.37 1.94
2049 2829 6.930667 AAAAACAGAAATGAAATGCAAGCT 57.069 29.167 0.00 0.00 0.00 3.74
2050 2830 5.917541 AAACAGAAATGAAATGCAAGCTG 57.082 34.783 0.00 0.00 32.58 4.24
2051 2831 4.859304 ACAGAAATGAAATGCAAGCTGA 57.141 36.364 0.00 0.00 31.52 4.26
2052 2832 5.401531 ACAGAAATGAAATGCAAGCTGAT 57.598 34.783 0.00 0.00 31.52 2.90
2053 2833 5.790593 ACAGAAATGAAATGCAAGCTGATT 58.209 33.333 0.00 0.00 31.52 2.57
2054 2834 5.867716 ACAGAAATGAAATGCAAGCTGATTC 59.132 36.000 0.00 0.00 31.52 2.52
2055 2835 6.100004 CAGAAATGAAATGCAAGCTGATTCT 58.900 36.000 0.00 0.00 0.00 2.40
2140 2921 2.762327 AGCATGAATTACAAAGCCCTGG 59.238 45.455 0.00 0.00 35.29 4.45
2143 2924 3.806949 TGAATTACAAAGCCCTGGACT 57.193 42.857 0.00 0.00 0.00 3.85
2153 2934 3.356529 AGCCCTGGACTTGAAATGTAG 57.643 47.619 0.00 0.00 0.00 2.74
2154 2935 2.025887 AGCCCTGGACTTGAAATGTAGG 60.026 50.000 0.00 0.00 0.00 3.18
2161 2942 4.469945 TGGACTTGAAATGTAGGTAGGAGG 59.530 45.833 0.00 0.00 0.00 4.30
2166 2947 5.693769 TGAAATGTAGGTAGGAGGGAAAG 57.306 43.478 0.00 0.00 0.00 2.62
2167 2948 5.098663 TGAAATGTAGGTAGGAGGGAAAGT 58.901 41.667 0.00 0.00 0.00 2.66
2169 2950 6.731919 TGAAATGTAGGTAGGAGGGAAAGTAA 59.268 38.462 0.00 0.00 0.00 2.24
2173 2954 4.431158 AGGTAGGAGGGAAAGTAAAGGA 57.569 45.455 0.00 0.00 0.00 3.36
2216 2997 5.406175 GCTGAAGCAAAGCAACATATTTCAA 59.594 36.000 0.00 0.00 40.52 2.69
2217 2998 6.400727 GCTGAAGCAAAGCAACATATTTCAAG 60.401 38.462 0.00 0.00 40.52 3.02
2218 2999 5.406175 TGAAGCAAAGCAACATATTTCAAGC 59.594 36.000 0.00 0.00 0.00 4.01
2219 3000 4.885413 AGCAAAGCAACATATTTCAAGCA 58.115 34.783 0.00 0.00 0.00 3.91
2220 3001 5.299148 AGCAAAGCAACATATTTCAAGCAA 58.701 33.333 0.00 0.00 0.00 3.91
2221 3002 5.759273 AGCAAAGCAACATATTTCAAGCAAA 59.241 32.000 0.00 0.00 0.00 3.68
2222 3003 6.073440 AGCAAAGCAACATATTTCAAGCAAAG 60.073 34.615 0.00 0.00 0.00 2.77
2223 3004 5.851047 AAGCAACATATTTCAAGCAAAGC 57.149 34.783 0.00 0.00 0.00 3.51
2224 3005 4.885413 AGCAACATATTTCAAGCAAAGCA 58.115 34.783 0.00 0.00 0.00 3.91
2225 3006 5.299148 AGCAACATATTTCAAGCAAAGCAA 58.701 33.333 0.00 0.00 0.00 3.91
2226 3007 5.178067 AGCAACATATTTCAAGCAAAGCAAC 59.822 36.000 0.00 0.00 0.00 4.17
2227 3008 5.050227 GCAACATATTTCAAGCAAAGCAACA 60.050 36.000 0.00 0.00 0.00 3.33
2228 3009 6.347888 GCAACATATTTCAAGCAAAGCAACAT 60.348 34.615 0.00 0.00 0.00 2.71
2229 3010 7.148606 GCAACATATTTCAAGCAAAGCAACATA 60.149 33.333 0.00 0.00 0.00 2.29
2230 3011 8.875803 CAACATATTTCAAGCAAAGCAACATAT 58.124 29.630 0.00 0.00 0.00 1.78
2231 3012 9.439500 AACATATTTCAAGCAAAGCAACATATT 57.561 25.926 0.00 0.00 0.00 1.28
2232 3013 9.439500 ACATATTTCAAGCAAAGCAACATATTT 57.561 25.926 0.00 0.00 0.00 1.40
2233 3014 9.910511 CATATTTCAAGCAAAGCAACATATTTC 57.089 29.630 0.00 0.00 0.00 2.17
2234 3015 7.966246 ATTTCAAGCAAAGCAACATATTTCA 57.034 28.000 0.00 0.00 0.00 2.69
2256 3037 6.751157 TCAGGTTCAACATTAGAACGTAGAA 58.249 36.000 0.00 0.00 44.78 2.10
2258 3039 6.645415 CAGGTTCAACATTAGAACGTAGAACT 59.355 38.462 0.00 0.00 44.78 3.01
2268 3049 5.899120 AGAACGTAGAACTTGATGAGCTA 57.101 39.130 0.00 0.00 0.00 3.32
2271 3052 4.734917 ACGTAGAACTTGATGAGCTACAC 58.265 43.478 0.00 0.00 32.95 2.90
2275 3056 6.634837 CGTAGAACTTGATGAGCTACACTATG 59.365 42.308 0.00 0.00 32.95 2.23
2276 3057 6.782082 AGAACTTGATGAGCTACACTATGA 57.218 37.500 0.00 0.00 0.00 2.15
2277 3058 6.804677 AGAACTTGATGAGCTACACTATGAG 58.195 40.000 0.00 0.00 0.00 2.90
2278 3059 6.379703 AGAACTTGATGAGCTACACTATGAGT 59.620 38.462 0.00 0.00 0.00 3.41
2325 3106 8.670521 AAAGAGTGATTCCATTTATTTCCCTT 57.329 30.769 0.00 0.00 0.00 3.95
2342 3123 7.831691 TTTCCCTTGAAATATGAAACACTGA 57.168 32.000 0.00 0.00 35.58 3.41
2343 3124 7.452880 TTCCCTTGAAATATGAAACACTGAG 57.547 36.000 0.00 0.00 0.00 3.35
2344 3125 6.778821 TCCCTTGAAATATGAAACACTGAGA 58.221 36.000 0.00 0.00 0.00 3.27
2357 3139 5.733620 AACACTGAGATTGCAAATTGGAT 57.266 34.783 1.71 0.00 0.00 3.41
2358 3140 5.068234 ACACTGAGATTGCAAATTGGATG 57.932 39.130 1.71 1.25 0.00 3.51
2360 3142 3.118884 ACTGAGATTGCAAATTGGATGCC 60.119 43.478 1.71 0.00 43.16 4.40
2388 3170 6.790232 TGAAGAAATCACCCAAAAGTTTCT 57.210 33.333 0.00 0.00 39.92 2.52
2411 3193 1.531602 GCTCCATGGGGTATTGGCC 60.532 63.158 14.66 0.00 34.93 5.36
2420 3202 1.342975 GGGGTATTGGCCTCCACAATT 60.343 52.381 3.32 0.00 39.18 2.32
2427 3209 0.251787 GGCCTCCACAATTTCACCCT 60.252 55.000 0.00 0.00 0.00 4.34
2481 3263 6.588719 TCCATAAGAAAAGTTGGGTGAATG 57.411 37.500 0.00 0.00 0.00 2.67
2493 3275 2.575735 TGGGTGAATGATGTTGAGCCTA 59.424 45.455 0.00 0.00 0.00 3.93
2540 3322 0.801251 GCAAGTGCTTCTGCCTGTAG 59.199 55.000 0.00 0.00 38.71 2.74
2556 3338 4.688021 CCTGTAGTGAAGAAGATGTAGCC 58.312 47.826 0.00 0.00 0.00 3.93
2561 3343 2.427453 GTGAAGAAGATGTAGCCGGAGA 59.573 50.000 5.05 0.00 0.00 3.71
2568 3350 1.342819 GATGTAGCCGGAGATGAAGCT 59.657 52.381 5.05 0.00 39.37 3.74
2605 3387 8.469200 CATTTACTTCAAATTGATCCTTAGGCA 58.531 33.333 0.00 0.00 34.49 4.75
2610 3392 5.192927 TCAAATTGATCCTTAGGCAACGAT 58.807 37.500 0.00 0.00 46.39 3.73
2628 3410 5.425196 ACGATAGATAGACTCCTACTCCC 57.575 47.826 0.00 0.00 41.38 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.603707 ACAATGTGCCAGGTCTGACG 60.604 55.000 1.07 0.00 0.00 4.35
1 2 1.160137 GACAATGTGCCAGGTCTGAC 58.840 55.000 0.00 0.00 0.00 3.51
2 3 0.036732 GGACAATGTGCCAGGTCTGA 59.963 55.000 0.00 0.00 0.00 3.27
3 4 0.037303 AGGACAATGTGCCAGGTCTG 59.963 55.000 0.07 0.00 0.00 3.51
5 6 0.883833 CAAGGACAATGTGCCAGGTC 59.116 55.000 0.07 0.00 0.00 3.85
6 7 0.478072 TCAAGGACAATGTGCCAGGT 59.522 50.000 0.07 0.00 0.00 4.00
7 8 1.843368 ATCAAGGACAATGTGCCAGG 58.157 50.000 0.07 0.00 0.00 4.45
8 9 2.094390 CCAATCAAGGACAATGTGCCAG 60.094 50.000 0.07 0.00 0.00 4.85
9 10 1.894466 CCAATCAAGGACAATGTGCCA 59.106 47.619 0.07 0.00 0.00 4.92
10 11 1.895131 ACCAATCAAGGACAATGTGCC 59.105 47.619 0.07 0.00 0.00 5.01
11 12 3.005684 TCAACCAATCAAGGACAATGTGC 59.994 43.478 0.00 0.00 0.00 4.57
12 13 4.852134 TCAACCAATCAAGGACAATGTG 57.148 40.909 0.00 0.00 0.00 3.21
13 14 7.722949 ATAATCAACCAATCAAGGACAATGT 57.277 32.000 0.00 0.00 0.00 2.71
14 15 7.707893 GGAATAATCAACCAATCAAGGACAATG 59.292 37.037 0.00 0.00 0.00 2.82
15 16 7.416664 CGGAATAATCAACCAATCAAGGACAAT 60.417 37.037 0.00 0.00 0.00 2.71
16 17 6.127758 CGGAATAATCAACCAATCAAGGACAA 60.128 38.462 0.00 0.00 0.00 3.18
17 18 5.356751 CGGAATAATCAACCAATCAAGGACA 59.643 40.000 0.00 0.00 0.00 4.02
18 19 5.221048 CCGGAATAATCAACCAATCAAGGAC 60.221 44.000 0.00 0.00 0.00 3.85
19 20 4.887071 CCGGAATAATCAACCAATCAAGGA 59.113 41.667 0.00 0.00 0.00 3.36
20 21 4.644685 ACCGGAATAATCAACCAATCAAGG 59.355 41.667 9.46 0.00 0.00 3.61
21 22 5.221048 GGACCGGAATAATCAACCAATCAAG 60.221 44.000 9.46 0.00 0.00 3.02
22 23 4.642885 GGACCGGAATAATCAACCAATCAA 59.357 41.667 9.46 0.00 0.00 2.57
23 24 4.204012 GGACCGGAATAATCAACCAATCA 58.796 43.478 9.46 0.00 0.00 2.57
24 25 4.204012 TGGACCGGAATAATCAACCAATC 58.796 43.478 9.46 0.00 0.00 2.67
25 26 4.243793 TGGACCGGAATAATCAACCAAT 57.756 40.909 9.46 0.00 0.00 3.16
26 27 3.722908 TGGACCGGAATAATCAACCAA 57.277 42.857 9.46 0.00 0.00 3.67
27 28 3.722908 TTGGACCGGAATAATCAACCA 57.277 42.857 9.46 0.28 0.00 3.67
28 29 4.037565 GGATTTGGACCGGAATAATCAACC 59.962 45.833 9.46 0.00 0.00 3.77
29 30 4.037565 GGGATTTGGACCGGAATAATCAAC 59.962 45.833 9.46 5.24 0.00 3.18
30 31 4.211920 GGGATTTGGACCGGAATAATCAA 58.788 43.478 9.46 0.00 0.00 2.57
31 32 3.435890 GGGGATTTGGACCGGAATAATCA 60.436 47.826 9.46 0.00 0.00 2.57
32 33 3.154710 GGGGATTTGGACCGGAATAATC 58.845 50.000 9.46 11.21 0.00 1.75
33 34 2.488347 CGGGGATTTGGACCGGAATAAT 60.488 50.000 9.46 1.63 43.69 1.28
34 35 1.134037 CGGGGATTTGGACCGGAATAA 60.134 52.381 9.46 0.00 43.69 1.40
35 36 0.470766 CGGGGATTTGGACCGGAATA 59.529 55.000 9.46 0.00 43.69 1.75
36 37 1.226262 CGGGGATTTGGACCGGAAT 59.774 57.895 9.46 0.00 43.69 3.01
37 38 2.672295 CGGGGATTTGGACCGGAA 59.328 61.111 9.46 0.00 43.69 4.30
41 42 0.179018 CCTGATCGGGGATTTGGACC 60.179 60.000 13.34 0.00 0.00 4.46
42 43 0.837272 TCCTGATCGGGGATTTGGAC 59.163 55.000 20.82 0.00 0.00 4.02
43 44 1.131638 CTCCTGATCGGGGATTTGGA 58.868 55.000 20.82 0.00 33.87 3.53
44 45 0.536006 GCTCCTGATCGGGGATTTGG 60.536 60.000 20.82 4.30 33.87 3.28
45 46 0.181114 TGCTCCTGATCGGGGATTTG 59.819 55.000 20.82 7.29 33.87 2.32
46 47 0.181350 GTGCTCCTGATCGGGGATTT 59.819 55.000 20.82 0.00 33.87 2.17
47 48 0.982852 TGTGCTCCTGATCGGGGATT 60.983 55.000 20.82 0.00 33.87 3.01
48 49 1.383109 TGTGCTCCTGATCGGGGAT 60.383 57.895 20.82 0.00 33.87 3.85
49 50 2.038813 TGTGCTCCTGATCGGGGA 59.961 61.111 20.82 13.21 33.87 4.81
50 51 2.187946 GTGTGCTCCTGATCGGGG 59.812 66.667 20.82 12.15 35.81 5.73
51 52 2.202797 CGTGTGCTCCTGATCGGG 60.203 66.667 15.09 15.09 0.00 5.14
52 53 2.202797 CCGTGTGCTCCTGATCGG 60.203 66.667 0.00 0.00 0.00 4.18
53 54 1.517257 GACCGTGTGCTCCTGATCG 60.517 63.158 0.00 0.00 0.00 3.69
54 55 0.737715 GTGACCGTGTGCTCCTGATC 60.738 60.000 0.00 0.00 0.00 2.92
55 56 1.293498 GTGACCGTGTGCTCCTGAT 59.707 57.895 0.00 0.00 0.00 2.90
56 57 2.734591 GTGACCGTGTGCTCCTGA 59.265 61.111 0.00 0.00 0.00 3.86
57 58 2.734723 CGTGACCGTGTGCTCCTG 60.735 66.667 0.00 0.00 0.00 3.86
58 59 3.991051 CCGTGACCGTGTGCTCCT 61.991 66.667 0.00 0.00 0.00 3.69
59 60 3.916392 CTCCGTGACCGTGTGCTCC 62.916 68.421 0.00 0.00 0.00 4.70
60 61 2.430921 CTCCGTGACCGTGTGCTC 60.431 66.667 0.00 0.00 0.00 4.26
61 62 3.224324 ACTCCGTGACCGTGTGCT 61.224 61.111 0.00 0.00 0.00 4.40
62 63 3.036084 CACTCCGTGACCGTGTGC 61.036 66.667 0.00 0.00 35.23 4.57
63 64 2.355837 CCACTCCGTGACCGTGTG 60.356 66.667 0.00 0.31 35.23 3.82
64 65 2.836360 ACCACTCCGTGACCGTGT 60.836 61.111 0.00 0.00 35.23 4.49
65 66 2.355837 CACCACTCCGTGACCGTG 60.356 66.667 0.00 0.00 35.23 4.94
66 67 3.612681 CCACCACTCCGTGACCGT 61.613 66.667 0.00 0.00 35.23 4.83
68 69 3.626924 AGCCACCACTCCGTGACC 61.627 66.667 0.00 0.00 35.23 4.02
69 70 2.357517 CAGCCACCACTCCGTGAC 60.358 66.667 0.00 0.00 35.23 3.67
70 71 3.625897 CCAGCCACCACTCCGTGA 61.626 66.667 0.00 0.00 35.23 4.35
71 72 4.704833 CCCAGCCACCACTCCGTG 62.705 72.222 0.00 0.00 0.00 4.94
84 85 3.191539 GAGCTCTTTCGCGCCCAG 61.192 66.667 6.43 0.00 34.40 4.45
112 113 3.680620 TTGAGGGCCTTCCGATGCG 62.681 63.158 13.07 0.00 41.52 4.73
113 114 0.753111 ATTTGAGGGCCTTCCGATGC 60.753 55.000 13.07 0.00 41.52 3.91
114 115 1.312815 GATTTGAGGGCCTTCCGATG 58.687 55.000 13.07 0.00 41.52 3.84
115 116 0.183731 GGATTTGAGGGCCTTCCGAT 59.816 55.000 13.07 6.09 41.52 4.18
116 117 1.204786 TGGATTTGAGGGCCTTCCGA 61.205 55.000 13.07 0.70 41.52 4.55
117 118 0.106519 ATGGATTTGAGGGCCTTCCG 60.107 55.000 13.07 0.00 41.52 4.30
118 119 1.697284 GATGGATTTGAGGGCCTTCC 58.303 55.000 13.07 11.71 0.00 3.46
119 120 1.312815 CGATGGATTTGAGGGCCTTC 58.687 55.000 7.89 8.18 0.00 3.46
120 121 0.753111 GCGATGGATTTGAGGGCCTT 60.753 55.000 7.89 0.00 0.00 4.35
121 122 1.152881 GCGATGGATTTGAGGGCCT 60.153 57.895 5.25 5.25 0.00 5.19
122 123 2.546494 CGCGATGGATTTGAGGGCC 61.546 63.158 0.00 0.00 0.00 5.80
123 124 3.025619 CGCGATGGATTTGAGGGC 58.974 61.111 0.00 0.00 0.00 5.19
124 125 1.097547 AAGCGCGATGGATTTGAGGG 61.098 55.000 12.10 0.00 0.00 4.30
125 126 0.305922 GAAGCGCGATGGATTTGAGG 59.694 55.000 12.10 0.00 0.00 3.86
126 127 1.293924 AGAAGCGCGATGGATTTGAG 58.706 50.000 12.10 0.00 0.00 3.02
127 128 1.398041 CAAGAAGCGCGATGGATTTGA 59.602 47.619 12.10 0.00 0.00 2.69
128 129 1.131126 ACAAGAAGCGCGATGGATTTG 59.869 47.619 12.10 9.53 0.00 2.32
129 130 1.131126 CACAAGAAGCGCGATGGATTT 59.869 47.619 12.10 0.00 0.00 2.17
130 131 0.729116 CACAAGAAGCGCGATGGATT 59.271 50.000 12.10 0.00 0.00 3.01
131 132 1.709147 GCACAAGAAGCGCGATGGAT 61.709 55.000 12.10 0.00 0.00 3.41
132 133 2.390599 GCACAAGAAGCGCGATGGA 61.391 57.895 12.10 0.00 0.00 3.41
133 134 2.099062 GCACAAGAAGCGCGATGG 59.901 61.111 12.10 0.00 0.00 3.51
134 135 2.099062 GGCACAAGAAGCGCGATG 59.901 61.111 12.10 2.19 0.00 3.84
135 136 3.127533 GGGCACAAGAAGCGCGAT 61.128 61.111 12.10 0.00 35.22 4.58
138 139 3.741476 CCAGGGCACAAGAAGCGC 61.741 66.667 0.00 0.00 44.31 5.92
139 140 1.377725 ATCCAGGGCACAAGAAGCG 60.378 57.895 0.00 0.00 0.00 4.68
140 141 1.941999 GCATCCAGGGCACAAGAAGC 61.942 60.000 0.00 0.00 0.00 3.86
141 142 0.323178 AGCATCCAGGGCACAAGAAG 60.323 55.000 0.00 0.00 0.00 2.85
142 143 0.322816 GAGCATCCAGGGCACAAGAA 60.323 55.000 0.00 0.00 0.00 2.52
143 144 1.203441 AGAGCATCCAGGGCACAAGA 61.203 55.000 0.00 0.00 33.66 3.02
144 145 1.030488 CAGAGCATCCAGGGCACAAG 61.030 60.000 0.00 0.00 33.66 3.16
145 146 1.001764 CAGAGCATCCAGGGCACAA 60.002 57.895 0.00 0.00 33.66 3.33
146 147 2.672908 CAGAGCATCCAGGGCACA 59.327 61.111 0.00 0.00 33.66 4.57
147 148 2.124403 CCAGAGCATCCAGGGCAC 60.124 66.667 0.00 0.00 33.66 5.01
148 149 1.918467 CTTCCAGAGCATCCAGGGCA 61.918 60.000 0.00 0.00 33.66 5.36
149 150 1.153005 CTTCCAGAGCATCCAGGGC 60.153 63.158 0.00 0.00 33.66 5.19
159 160 1.294659 GCGTTCCTGTGCTTCCAGAG 61.295 60.000 0.94 0.00 34.23 3.35
160 161 1.301716 GCGTTCCTGTGCTTCCAGA 60.302 57.895 0.94 0.00 34.23 3.86
161 162 2.328099 GGCGTTCCTGTGCTTCCAG 61.328 63.158 0.00 0.00 0.00 3.86
162 163 2.281484 GGCGTTCCTGTGCTTCCA 60.281 61.111 0.00 0.00 0.00 3.53
163 164 2.032681 AGGCGTTCCTGTGCTTCC 59.967 61.111 0.00 0.00 42.34 3.46
171 172 1.006102 CGAAGACACAGGCGTTCCT 60.006 57.895 0.00 0.00 45.66 3.36
172 173 1.006571 TCGAAGACACAGGCGTTCC 60.007 57.895 0.00 0.00 0.00 3.62
173 174 4.647654 TCGAAGACACAGGCGTTC 57.352 55.556 0.00 0.00 0.00 3.95
184 185 3.033764 GCGTGGCGTTGTCGAAGA 61.034 61.111 0.00 0.00 39.71 2.87
185 186 4.072088 GGCGTGGCGTTGTCGAAG 62.072 66.667 0.00 0.00 39.71 3.79
186 187 4.893601 TGGCGTGGCGTTGTCGAA 62.894 61.111 0.00 0.00 39.71 3.71
187 188 4.673298 ATGGCGTGGCGTTGTCGA 62.673 61.111 0.00 0.00 39.71 4.20
188 189 4.147322 GATGGCGTGGCGTTGTCG 62.147 66.667 0.00 0.00 40.37 4.35
189 190 3.799755 GGATGGCGTGGCGTTGTC 61.800 66.667 0.00 0.00 0.00 3.18
190 191 3.918253 ATGGATGGCGTGGCGTTGT 62.918 57.895 0.00 0.00 0.00 3.32
191 192 3.112126 GATGGATGGCGTGGCGTTG 62.112 63.158 0.00 0.00 0.00 4.10
192 193 2.824041 GATGGATGGCGTGGCGTT 60.824 61.111 0.00 0.00 0.00 4.84
194 195 4.889856 TCGATGGATGGCGTGGCG 62.890 66.667 0.00 0.00 0.00 5.69
195 196 1.845809 GATTCGATGGATGGCGTGGC 61.846 60.000 0.00 0.00 0.00 5.01
196 197 0.532640 TGATTCGATGGATGGCGTGG 60.533 55.000 0.00 0.00 0.00 4.94
197 198 0.583438 GTGATTCGATGGATGGCGTG 59.417 55.000 0.00 0.00 0.00 5.34
198 199 0.465705 AGTGATTCGATGGATGGCGT 59.534 50.000 0.00 0.00 0.00 5.68
199 200 2.288457 ACTAGTGATTCGATGGATGGCG 60.288 50.000 0.00 0.00 0.00 5.69
200 201 3.062763 CACTAGTGATTCGATGGATGGC 58.937 50.000 18.45 0.00 0.00 4.40
201 202 3.070159 ACCACTAGTGATTCGATGGATGG 59.930 47.826 24.68 5.06 0.00 3.51
202 203 4.327982 ACCACTAGTGATTCGATGGATG 57.672 45.455 24.68 5.20 0.00 3.51
203 204 5.011125 CCTAACCACTAGTGATTCGATGGAT 59.989 44.000 24.68 2.22 0.00 3.41
204 205 4.341235 CCTAACCACTAGTGATTCGATGGA 59.659 45.833 24.68 0.00 0.00 3.41
205 206 4.341235 TCCTAACCACTAGTGATTCGATGG 59.659 45.833 24.68 13.35 0.00 3.51
206 207 5.515797 TCCTAACCACTAGTGATTCGATG 57.484 43.478 24.68 7.91 0.00 3.84
207 208 5.833667 TGATCCTAACCACTAGTGATTCGAT 59.166 40.000 24.68 16.72 0.00 3.59
208 209 5.198207 TGATCCTAACCACTAGTGATTCGA 58.802 41.667 24.68 12.72 0.00 3.71
209 210 5.515797 TGATCCTAACCACTAGTGATTCG 57.484 43.478 24.68 9.56 0.00 3.34
210 211 6.098409 TCCTTGATCCTAACCACTAGTGATTC 59.902 42.308 24.68 1.38 0.00 2.52
211 212 5.964477 TCCTTGATCCTAACCACTAGTGATT 59.036 40.000 24.68 16.57 0.00 2.57
212 213 5.364157 GTCCTTGATCCTAACCACTAGTGAT 59.636 44.000 24.68 14.50 0.00 3.06
213 214 4.710375 GTCCTTGATCCTAACCACTAGTGA 59.290 45.833 24.68 3.09 0.00 3.41
214 215 4.440250 CGTCCTTGATCCTAACCACTAGTG 60.440 50.000 16.34 16.34 0.00 2.74
215 216 3.700038 CGTCCTTGATCCTAACCACTAGT 59.300 47.826 0.00 0.00 0.00 2.57
216 217 3.952323 TCGTCCTTGATCCTAACCACTAG 59.048 47.826 0.00 0.00 0.00 2.57
217 218 3.952323 CTCGTCCTTGATCCTAACCACTA 59.048 47.826 0.00 0.00 0.00 2.74
218 219 2.761208 CTCGTCCTTGATCCTAACCACT 59.239 50.000 0.00 0.00 0.00 4.00
219 220 2.159085 CCTCGTCCTTGATCCTAACCAC 60.159 54.545 0.00 0.00 0.00 4.16
220 221 2.108168 CCTCGTCCTTGATCCTAACCA 58.892 52.381 0.00 0.00 0.00 3.67
221 222 1.202545 GCCTCGTCCTTGATCCTAACC 60.203 57.143 0.00 0.00 0.00 2.85
222 223 1.202545 GGCCTCGTCCTTGATCCTAAC 60.203 57.143 0.00 0.00 0.00 2.34
223 224 1.120530 GGCCTCGTCCTTGATCCTAA 58.879 55.000 0.00 0.00 0.00 2.69
224 225 0.759436 GGGCCTCGTCCTTGATCCTA 60.759 60.000 0.84 0.00 0.00 2.94
225 226 2.066999 GGGCCTCGTCCTTGATCCT 61.067 63.158 0.84 0.00 0.00 3.24
226 227 2.506472 GGGCCTCGTCCTTGATCC 59.494 66.667 0.84 0.00 0.00 3.36
227 228 2.107141 CGGGCCTCGTCCTTGATC 59.893 66.667 0.84 0.00 0.00 2.92
228 229 3.470888 CCGGGCCTCGTCCTTGAT 61.471 66.667 0.84 0.00 37.11 2.57
230 231 4.760047 CACCGGGCCTCGTCCTTG 62.760 72.222 6.32 0.00 37.11 3.61
242 243 3.365265 GCTTCAGCCCAACACCGG 61.365 66.667 0.00 0.00 34.31 5.28
243 244 2.594303 TGCTTCAGCCCAACACCG 60.594 61.111 0.00 0.00 41.18 4.94
244 245 2.270986 CCTGCTTCAGCCCAACACC 61.271 63.158 0.00 0.00 41.18 4.16
245 246 1.228245 TCCTGCTTCAGCCCAACAC 60.228 57.895 0.00 0.00 41.18 3.32
246 247 1.073722 CTCCTGCTTCAGCCCAACA 59.926 57.895 0.00 0.00 41.18 3.33
247 248 2.338785 GCTCCTGCTTCAGCCCAAC 61.339 63.158 0.00 0.00 41.18 3.77
248 249 2.034687 GCTCCTGCTTCAGCCCAA 59.965 61.111 0.00 0.00 41.18 4.12
252 253 2.438075 CTGGGCTCCTGCTTCAGC 60.438 66.667 0.00 0.00 39.59 4.26
253 254 2.271497 CCTGGGCTCCTGCTTCAG 59.729 66.667 0.00 0.00 38.80 3.02
254 255 3.333219 CCCTGGGCTCCTGCTTCA 61.333 66.667 0.00 0.00 39.59 3.02
255 256 3.011517 TCCCTGGGCTCCTGCTTC 61.012 66.667 8.22 0.00 39.59 3.86
256 257 3.334054 GTCCCTGGGCTCCTGCTT 61.334 66.667 8.22 0.00 39.59 3.91
257 258 3.880033 AAGTCCCTGGGCTCCTGCT 62.880 63.158 8.22 0.00 39.59 4.24
258 259 3.334054 AAGTCCCTGGGCTCCTGC 61.334 66.667 8.22 0.00 38.76 4.85
259 260 2.993853 GAAGTCCCTGGGCTCCTG 59.006 66.667 8.22 0.00 0.00 3.86
260 261 2.685380 CGAAGTCCCTGGGCTCCT 60.685 66.667 8.22 0.29 0.00 3.69
261 262 3.787001 CCGAAGTCCCTGGGCTCC 61.787 72.222 8.22 0.00 0.00 4.70
262 263 3.787001 CCCGAAGTCCCTGGGCTC 61.787 72.222 8.22 3.63 35.82 4.70
266 267 0.605589 GAACAACCCGAAGTCCCTGG 60.606 60.000 0.00 0.00 0.00 4.45
267 268 0.396811 AGAACAACCCGAAGTCCCTG 59.603 55.000 0.00 0.00 0.00 4.45
268 269 0.396811 CAGAACAACCCGAAGTCCCT 59.603 55.000 0.00 0.00 0.00 4.20
269 270 1.235281 GCAGAACAACCCGAAGTCCC 61.235 60.000 0.00 0.00 0.00 4.46
270 271 1.235281 GGCAGAACAACCCGAAGTCC 61.235 60.000 0.00 0.00 0.00 3.85
271 272 1.235281 GGGCAGAACAACCCGAAGTC 61.235 60.000 0.00 0.00 36.07 3.01
272 273 1.228154 GGGCAGAACAACCCGAAGT 60.228 57.895 0.00 0.00 36.07 3.01
273 274 3.668386 GGGCAGAACAACCCGAAG 58.332 61.111 0.00 0.00 36.07 3.79
280 281 0.754957 CCAGGTTGTGGGCAGAACAA 60.755 55.000 0.00 0.00 43.63 2.83
281 282 1.152777 CCAGGTTGTGGGCAGAACA 60.153 57.895 0.00 0.00 43.63 3.18
282 283 3.763671 CCAGGTTGTGGGCAGAAC 58.236 61.111 0.00 0.00 43.63 3.01
297 298 3.156293 CACAAAATCAGTGGACATCCCA 58.844 45.455 0.00 0.00 44.25 4.37
298 299 2.094545 GCACAAAATCAGTGGACATCCC 60.095 50.000 0.00 0.00 37.46 3.85
299 300 2.821969 AGCACAAAATCAGTGGACATCC 59.178 45.455 0.00 0.00 37.46 3.51
300 301 4.510038 AAGCACAAAATCAGTGGACATC 57.490 40.909 0.00 0.00 37.46 3.06
301 302 4.942761 AAAGCACAAAATCAGTGGACAT 57.057 36.364 0.00 0.00 37.46 3.06
302 303 4.402155 AGAAAAGCACAAAATCAGTGGACA 59.598 37.500 0.00 0.00 37.46 4.02
303 304 4.936891 AGAAAAGCACAAAATCAGTGGAC 58.063 39.130 0.00 0.00 37.46 4.02
304 305 5.596836 AAGAAAAGCACAAAATCAGTGGA 57.403 34.783 0.00 0.00 37.46 4.02
305 306 5.581874 ACAAAGAAAAGCACAAAATCAGTGG 59.418 36.000 0.00 0.00 37.46 4.00
306 307 6.651755 ACAAAGAAAAGCACAAAATCAGTG 57.348 33.333 0.00 0.00 39.92 3.66
307 308 7.489113 CAGTACAAAGAAAAGCACAAAATCAGT 59.511 33.333 0.00 0.00 0.00 3.41
308 309 7.515684 GCAGTACAAAGAAAAGCACAAAATCAG 60.516 37.037 0.00 0.00 0.00 2.90
309 310 6.255453 GCAGTACAAAGAAAAGCACAAAATCA 59.745 34.615 0.00 0.00 0.00 2.57
310 311 6.476706 AGCAGTACAAAGAAAAGCACAAAATC 59.523 34.615 0.00 0.00 0.00 2.17
311 312 6.340522 AGCAGTACAAAGAAAAGCACAAAAT 58.659 32.000 0.00 0.00 0.00 1.82
312 313 5.719173 AGCAGTACAAAGAAAAGCACAAAA 58.281 33.333 0.00 0.00 0.00 2.44
313 314 5.105957 TGAGCAGTACAAAGAAAAGCACAAA 60.106 36.000 0.00 0.00 0.00 2.83
314 315 4.397730 TGAGCAGTACAAAGAAAAGCACAA 59.602 37.500 0.00 0.00 0.00 3.33
315 316 3.944650 TGAGCAGTACAAAGAAAAGCACA 59.055 39.130 0.00 0.00 0.00 4.57
316 317 4.282873 GTGAGCAGTACAAAGAAAAGCAC 58.717 43.478 0.00 0.00 0.00 4.40
317 318 3.315191 GGTGAGCAGTACAAAGAAAAGCA 59.685 43.478 0.00 0.00 0.00 3.91
318 319 3.565902 AGGTGAGCAGTACAAAGAAAAGC 59.434 43.478 0.00 0.00 0.00 3.51
319 320 4.214332 GGAGGTGAGCAGTACAAAGAAAAG 59.786 45.833 0.00 0.00 0.00 2.27
320 321 4.134563 GGAGGTGAGCAGTACAAAGAAAA 58.865 43.478 0.00 0.00 0.00 2.29
321 322 3.391296 AGGAGGTGAGCAGTACAAAGAAA 59.609 43.478 0.00 0.00 0.00 2.52
322 323 2.972713 AGGAGGTGAGCAGTACAAAGAA 59.027 45.455 0.00 0.00 0.00 2.52
323 324 2.609747 AGGAGGTGAGCAGTACAAAGA 58.390 47.619 0.00 0.00 0.00 2.52
324 325 3.118956 CCTAGGAGGTGAGCAGTACAAAG 60.119 52.174 1.05 0.00 0.00 2.77
325 326 2.832129 CCTAGGAGGTGAGCAGTACAAA 59.168 50.000 1.05 0.00 0.00 2.83
326 327 2.042569 TCCTAGGAGGTGAGCAGTACAA 59.957 50.000 7.62 0.00 36.53 2.41
327 328 1.639108 TCCTAGGAGGTGAGCAGTACA 59.361 52.381 7.62 0.00 36.53 2.90
328 329 2.303175 CTCCTAGGAGGTGAGCAGTAC 58.697 57.143 28.68 0.00 38.51 2.73
329 330 2.738587 CTCCTAGGAGGTGAGCAGTA 57.261 55.000 28.68 0.00 38.51 2.74
330 331 3.605946 CTCCTAGGAGGTGAGCAGT 57.394 57.895 28.68 0.00 38.51 4.40
337 338 6.245579 GGTAGACCAATCCTCCTAGGAGGT 62.246 54.167 43.56 32.09 43.38 3.85
339 340 3.141272 AGGTAGACCAATCCTCCTAGGAG 59.859 52.174 29.27 29.27 43.00 3.69
340 341 3.140143 AGGTAGACCAATCCTCCTAGGA 58.860 50.000 11.98 11.98 43.56 2.94
341 342 3.621682 AGGTAGACCAATCCTCCTAGG 57.378 52.381 0.82 0.82 38.89 3.02
342 343 5.163290 GGAAAAGGTAGACCAATCCTCCTAG 60.163 48.000 0.66 0.00 38.89 3.02
343 344 4.720273 GGAAAAGGTAGACCAATCCTCCTA 59.280 45.833 0.66 0.00 38.89 2.94
344 345 3.523972 GGAAAAGGTAGACCAATCCTCCT 59.476 47.826 0.66 0.00 38.89 3.69
345 346 3.265995 TGGAAAAGGTAGACCAATCCTCC 59.734 47.826 14.70 8.03 38.89 4.30
346 347 4.569719 TGGAAAAGGTAGACCAATCCTC 57.430 45.455 14.70 0.58 38.89 3.71
347 348 4.540099 TCATGGAAAAGGTAGACCAATCCT 59.460 41.667 14.70 0.00 38.89 3.24
348 349 4.855340 TCATGGAAAAGGTAGACCAATCC 58.145 43.478 0.66 6.06 38.89 3.01
349 350 6.834168 TTTCATGGAAAAGGTAGACCAATC 57.166 37.500 0.66 0.00 38.89 2.67
350 351 6.953520 TCATTTCATGGAAAAGGTAGACCAAT 59.046 34.615 0.66 0.00 35.11 3.16
351 352 6.310941 TCATTTCATGGAAAAGGTAGACCAA 58.689 36.000 0.66 0.00 35.11 3.67
352 353 5.886609 TCATTTCATGGAAAAGGTAGACCA 58.113 37.500 0.66 0.00 35.11 4.02
353 354 6.834168 TTCATTTCATGGAAAAGGTAGACC 57.166 37.500 0.00 0.00 35.11 3.85
354 355 7.276438 GCATTTCATTTCATGGAAAAGGTAGAC 59.724 37.037 0.00 0.00 36.67 2.59
355 356 7.039152 TGCATTTCATTTCATGGAAAAGGTAGA 60.039 33.333 0.00 0.00 36.67 2.59
356 357 7.098477 TGCATTTCATTTCATGGAAAAGGTAG 58.902 34.615 0.00 0.00 36.67 3.18
357 358 7.002250 TGCATTTCATTTCATGGAAAAGGTA 57.998 32.000 0.00 0.00 36.67 3.08
358 359 5.867330 TGCATTTCATTTCATGGAAAAGGT 58.133 33.333 0.00 0.00 36.67 3.50
359 360 6.804770 TTGCATTTCATTTCATGGAAAAGG 57.195 33.333 0.00 0.00 36.67 3.11
360 361 7.040961 ACCTTTGCATTTCATTTCATGGAAAAG 60.041 33.333 0.00 0.00 39.38 2.27
361 362 6.771749 ACCTTTGCATTTCATTTCATGGAAAA 59.228 30.769 0.00 0.00 39.38 2.29
362 363 6.297582 ACCTTTGCATTTCATTTCATGGAAA 58.702 32.000 0.00 0.00 38.10 3.13
363 364 5.867330 ACCTTTGCATTTCATTTCATGGAA 58.133 33.333 0.00 0.00 31.07 3.53
364 365 5.481105 GACCTTTGCATTTCATTTCATGGA 58.519 37.500 0.00 0.00 0.00 3.41
365 366 4.632688 GGACCTTTGCATTTCATTTCATGG 59.367 41.667 0.00 0.00 0.00 3.66
366 367 5.484715 AGGACCTTTGCATTTCATTTCATG 58.515 37.500 0.00 0.00 0.00 3.07
367 368 5.750352 AGGACCTTTGCATTTCATTTCAT 57.250 34.783 0.00 0.00 0.00 2.57
368 369 5.549742 AAGGACCTTTGCATTTCATTTCA 57.450 34.783 0.00 0.00 0.00 2.69
369 370 6.232139 CAAAGGACCTTTGCATTTCATTTC 57.768 37.500 29.32 0.00 43.07 2.17
381 382 2.032924 CGAGAAAACGCAAAGGACCTTT 59.967 45.455 14.03 14.03 33.58 3.11
382 383 1.602377 CGAGAAAACGCAAAGGACCTT 59.398 47.619 0.00 0.00 0.00 3.50
383 384 1.202604 TCGAGAAAACGCAAAGGACCT 60.203 47.619 0.00 0.00 0.00 3.85
384 385 1.223187 TCGAGAAAACGCAAAGGACC 58.777 50.000 0.00 0.00 0.00 4.46
385 386 3.328237 TTTCGAGAAAACGCAAAGGAC 57.672 42.857 0.00 0.00 0.00 3.85
386 387 4.358494 TTTTTCGAGAAAACGCAAAGGA 57.642 36.364 10.18 0.00 39.70 3.36
404 405 3.119495 GCACCGCCAGATCATAACTTTTT 60.119 43.478 0.00 0.00 0.00 1.94
405 406 2.423538 GCACCGCCAGATCATAACTTTT 59.576 45.455 0.00 0.00 0.00 2.27
406 407 2.017049 GCACCGCCAGATCATAACTTT 58.983 47.619 0.00 0.00 0.00 2.66
407 408 1.210478 AGCACCGCCAGATCATAACTT 59.790 47.619 0.00 0.00 0.00 2.66
408 409 0.833287 AGCACCGCCAGATCATAACT 59.167 50.000 0.00 0.00 0.00 2.24
426 427 4.194640 ACCTAGCAGTGAATTGCATGTAG 58.805 43.478 0.00 0.00 46.47 2.74
438 439 6.821388 AGGAAATCATTACTACCTAGCAGTG 58.179 40.000 5.69 0.00 0.00 3.66
441 442 7.676683 AGAAGGAAATCATTACTACCTAGCA 57.323 36.000 0.00 0.00 0.00 3.49
448 449 6.658816 TGCTGCAAAGAAGGAAATCATTACTA 59.341 34.615 0.00 0.00 0.00 1.82
496 509 0.647410 CCATCATCAACGACGTGCTC 59.353 55.000 0.00 0.00 0.00 4.26
659 676 3.389925 AACACACTCAAAATGCCATGG 57.610 42.857 7.63 7.63 0.00 3.66
734 757 1.019805 GGCACCGAACTAAGCCAGAC 61.020 60.000 0.00 0.00 46.26 3.51
789 1047 4.799564 TTATTTGGCAAGAACCCATGAC 57.200 40.909 0.00 0.00 31.26 3.06
963 1528 9.956720 AGAAAGAAACACAAGAGAAATACATTG 57.043 29.630 0.00 0.00 0.00 2.82
1050 1617 6.035975 CGATGCACAACTGATTAGTATGTTCA 59.964 38.462 0.00 0.05 35.69 3.18
1057 1624 4.864806 CAGTACGATGCACAACTGATTAGT 59.135 41.667 12.00 0.00 41.47 2.24
1304 1883 1.639298 GCTTCACTGCATCACCCGTC 61.639 60.000 0.00 0.00 0.00 4.79
1404 1983 0.530870 GTCAACTAGCCGGGCAGATC 60.531 60.000 23.09 0.94 0.00 2.75
1405 1984 1.522569 GTCAACTAGCCGGGCAGAT 59.477 57.895 23.09 8.49 0.00 2.90
1452 2052 4.293415 CAACAAAAAGGATGACAGACAGC 58.707 43.478 0.00 0.00 0.00 4.40
1480 2082 4.054780 TGGACAAGCGTAAAGGCTATAG 57.945 45.455 0.00 0.00 43.93 1.31
1492 2145 3.664276 CGACACTGTTATTTGGACAAGCG 60.664 47.826 0.00 0.00 0.00 4.68
1596 2351 7.639039 CATGTGCACGTATTTCCTAACATATT 58.361 34.615 12.10 0.00 0.00 1.28
1615 2370 0.179129 CGAATTTCCCAGGCATGTGC 60.179 55.000 0.00 0.00 41.14 4.57
1626 2381 1.801178 GGATCATCGCCTCGAATTTCC 59.199 52.381 0.00 0.00 39.99 3.13
1630 2385 0.320247 GCTGGATCATCGCCTCGAAT 60.320 55.000 0.00 0.00 39.99 3.34
1632 2387 2.730733 GCTGGATCATCGCCTCGA 59.269 61.111 0.00 0.00 41.13 4.04
1633 2388 2.356793 GGCTGGATCATCGCCTCG 60.357 66.667 10.78 0.00 40.62 4.63
1638 2393 0.602106 AATGCGAGGCTGGATCATCG 60.602 55.000 0.00 0.00 38.19 3.84
1639 2394 1.155042 GAATGCGAGGCTGGATCATC 58.845 55.000 0.00 0.00 0.00 2.92
1640 2395 0.602106 CGAATGCGAGGCTGGATCAT 60.602 55.000 0.00 0.00 40.82 2.45
1641 2396 1.227350 CGAATGCGAGGCTGGATCA 60.227 57.895 0.00 0.00 40.82 2.92
1642 2397 2.602322 GCGAATGCGAGGCTGGATC 61.602 63.158 0.00 0.00 40.82 3.36
1643 2398 2.590007 GCGAATGCGAGGCTGGAT 60.590 61.111 0.00 0.00 40.82 3.41
1644 2399 4.838152 GGCGAATGCGAGGCTGGA 62.838 66.667 0.00 0.00 44.10 3.86
1645 2400 4.845580 AGGCGAATGCGAGGCTGG 62.846 66.667 0.00 0.00 44.10 4.85
1646 2401 1.926511 AAAAGGCGAATGCGAGGCTG 61.927 55.000 0.00 0.00 42.68 4.85
1647 2402 0.392461 TAAAAGGCGAATGCGAGGCT 60.392 50.000 0.00 0.00 45.54 4.58
1710 2465 2.157738 AGACAGATGGCAAAGCACTTC 58.842 47.619 0.00 0.00 0.00 3.01
1718 2473 1.067295 ACCAGGAAGACAGATGGCAA 58.933 50.000 0.00 0.00 36.21 4.52
1719 2474 1.067295 AACCAGGAAGACAGATGGCA 58.933 50.000 0.00 0.00 36.21 4.92
1748 2503 3.764466 CAGAGACGGGCGCTCCTT 61.764 66.667 7.64 0.00 32.82 3.36
1751 2506 3.991536 GAACCAGAGACGGGCGCTC 62.992 68.421 7.64 0.06 0.00 5.03
1752 2507 4.070552 GAACCAGAGACGGGCGCT 62.071 66.667 7.64 0.00 0.00 5.92
1753 2508 3.591254 AAGAACCAGAGACGGGCGC 62.591 63.158 0.00 0.00 0.00 6.53
1754 2509 1.004918 AAAGAACCAGAGACGGGCG 60.005 57.895 0.00 0.00 0.00 6.13
1755 2510 0.034896 TCAAAGAACCAGAGACGGGC 59.965 55.000 0.00 0.00 0.00 6.13
1756 2511 2.770164 ATCAAAGAACCAGAGACGGG 57.230 50.000 0.00 0.00 0.00 5.28
1770 2544 7.175104 AGGTGGTAAGCTATCTCAAAATCAAA 58.825 34.615 0.00 0.00 30.55 2.69
1773 2547 7.095017 GCATAGGTGGTAAGCTATCTCAAAATC 60.095 40.741 0.00 0.00 43.63 2.17
1774 2548 6.712547 GCATAGGTGGTAAGCTATCTCAAAAT 59.287 38.462 0.00 0.00 43.63 1.82
1775 2549 6.055588 GCATAGGTGGTAAGCTATCTCAAAA 58.944 40.000 0.00 0.00 43.63 2.44
1776 2550 5.454755 GGCATAGGTGGTAAGCTATCTCAAA 60.455 44.000 0.00 0.00 43.63 2.69
1778 2552 3.578716 GGCATAGGTGGTAAGCTATCTCA 59.421 47.826 0.00 0.00 43.63 3.27
1782 2556 3.909995 TCATGGCATAGGTGGTAAGCTAT 59.090 43.478 0.00 0.00 45.81 2.97
1783 2557 3.313791 TCATGGCATAGGTGGTAAGCTA 58.686 45.455 0.00 0.00 40.53 3.32
1784 2558 2.126882 TCATGGCATAGGTGGTAAGCT 58.873 47.619 0.00 0.00 37.95 3.74
1785 2559 2.638480 TCATGGCATAGGTGGTAAGC 57.362 50.000 0.00 0.00 0.00 3.09
1788 2562 2.422803 GGCTTTCATGGCATAGGTGGTA 60.423 50.000 0.00 0.00 0.00 3.25
1790 2564 1.035139 GGCTTTCATGGCATAGGTGG 58.965 55.000 0.00 0.00 0.00 4.61
1791 2565 1.035139 GGGCTTTCATGGCATAGGTG 58.965 55.000 0.00 0.00 0.00 4.00
1792 2566 0.106015 GGGGCTTTCATGGCATAGGT 60.106 55.000 0.00 0.00 0.00 3.08
1958 2738 6.249951 ACTAACCAATTTGCCACCTATGTTA 58.750 36.000 0.00 0.00 0.00 2.41
2026 2806 6.539464 TCAGCTTGCATTTCATTTCTGTTTTT 59.461 30.769 0.00 0.00 0.00 1.94
2027 2807 6.050432 TCAGCTTGCATTTCATTTCTGTTTT 58.950 32.000 0.00 0.00 0.00 2.43
2028 2808 5.603596 TCAGCTTGCATTTCATTTCTGTTT 58.396 33.333 0.00 0.00 0.00 2.83
2029 2809 5.204409 TCAGCTTGCATTTCATTTCTGTT 57.796 34.783 0.00 0.00 0.00 3.16
2030 2810 4.859304 TCAGCTTGCATTTCATTTCTGT 57.141 36.364 0.00 0.00 0.00 3.41
2031 2811 6.100004 AGAATCAGCTTGCATTTCATTTCTG 58.900 36.000 0.00 0.00 0.00 3.02
2032 2812 6.282199 AGAATCAGCTTGCATTTCATTTCT 57.718 33.333 0.00 0.00 0.00 2.52
2033 2813 6.963049 AAGAATCAGCTTGCATTTCATTTC 57.037 33.333 0.00 0.00 0.00 2.17
2034 2814 7.739498 AAAAGAATCAGCTTGCATTTCATTT 57.261 28.000 0.00 0.00 0.00 2.32
2035 2815 7.739498 AAAAAGAATCAGCTTGCATTTCATT 57.261 28.000 0.00 0.00 0.00 2.57
2090 2870 5.808042 GCTACTGAGCTGAATGAATTTGA 57.192 39.130 0.00 0.00 45.98 2.69
2140 2921 4.715297 TCCCTCCTACCTACATTTCAAGTC 59.285 45.833 0.00 0.00 0.00 3.01
2143 2924 5.550403 ACTTTCCCTCCTACCTACATTTCAA 59.450 40.000 0.00 0.00 0.00 2.69
2153 2934 3.842436 TGTCCTTTACTTTCCCTCCTACC 59.158 47.826 0.00 0.00 0.00 3.18
2154 2935 5.247792 TCTTGTCCTTTACTTTCCCTCCTAC 59.752 44.000 0.00 0.00 0.00 3.18
2169 2950 8.530311 CAGCTCATAGACATATATCTTGTCCTT 58.470 37.037 12.70 2.14 43.62 3.36
2173 2954 8.034215 GCTTCAGCTCATAGACATATATCTTGT 58.966 37.037 0.00 0.00 38.21 3.16
2216 2997 5.010922 TGAACCTGAAATATGTTGCTTTGCT 59.989 36.000 0.00 0.00 0.00 3.91
2217 2998 5.229423 TGAACCTGAAATATGTTGCTTTGC 58.771 37.500 0.00 0.00 0.00 3.68
2218 2999 6.700960 TGTTGAACCTGAAATATGTTGCTTTG 59.299 34.615 0.00 0.00 0.00 2.77
2219 3000 6.815089 TGTTGAACCTGAAATATGTTGCTTT 58.185 32.000 0.00 0.00 0.00 3.51
2220 3001 6.403866 TGTTGAACCTGAAATATGTTGCTT 57.596 33.333 0.00 0.00 0.00 3.91
2221 3002 6.594788 ATGTTGAACCTGAAATATGTTGCT 57.405 33.333 0.00 0.00 0.00 3.91
2222 3003 8.243426 TCTAATGTTGAACCTGAAATATGTTGC 58.757 33.333 0.00 0.00 0.00 4.17
2225 3006 8.450964 CGTTCTAATGTTGAACCTGAAATATGT 58.549 33.333 0.00 0.00 40.26 2.29
2226 3007 8.450964 ACGTTCTAATGTTGAACCTGAAATATG 58.549 33.333 0.00 0.00 40.26 1.78
2227 3008 8.561738 ACGTTCTAATGTTGAACCTGAAATAT 57.438 30.769 0.00 0.00 40.26 1.28
2228 3009 7.972832 ACGTTCTAATGTTGAACCTGAAATA 57.027 32.000 0.00 0.00 40.26 1.40
2229 3010 6.877611 ACGTTCTAATGTTGAACCTGAAAT 57.122 33.333 0.00 0.00 40.26 2.17
2230 3011 7.211573 TCTACGTTCTAATGTTGAACCTGAAA 58.788 34.615 0.00 0.00 40.26 2.69
2231 3012 6.751157 TCTACGTTCTAATGTTGAACCTGAA 58.249 36.000 0.00 0.00 40.26 3.02
2232 3013 6.335471 TCTACGTTCTAATGTTGAACCTGA 57.665 37.500 0.00 0.00 40.26 3.86
2233 3014 6.818416 GTTCTACGTTCTAATGTTGAACCTG 58.182 40.000 21.51 0.00 45.89 4.00
2256 3037 5.654209 TCACTCATAGTGTAGCTCATCAAGT 59.346 40.000 6.93 0.00 46.03 3.16
2258 3039 6.721704 ATCACTCATAGTGTAGCTCATCAA 57.278 37.500 6.93 0.00 46.03 2.57
2298 3079 9.768215 AGGGAAATAAATGGAATCACTCTTTAA 57.232 29.630 0.00 0.00 0.00 1.52
2299 3080 9.768215 AAGGGAAATAAATGGAATCACTCTTTA 57.232 29.630 0.00 0.00 0.00 1.85
2300 3081 8.534496 CAAGGGAAATAAATGGAATCACTCTTT 58.466 33.333 0.00 0.00 0.00 2.52
2301 3082 7.895429 TCAAGGGAAATAAATGGAATCACTCTT 59.105 33.333 0.00 0.00 0.00 2.85
2302 3083 7.413446 TCAAGGGAAATAAATGGAATCACTCT 58.587 34.615 0.00 0.00 0.00 3.24
2325 3106 7.451501 TGCAATCTCAGTGTTTCATATTTCA 57.548 32.000 0.00 0.00 0.00 2.69
2341 3122 3.454375 CAGGCATCCAATTTGCAATCTC 58.546 45.455 0.00 0.00 41.95 2.75
2342 3123 2.419574 GCAGGCATCCAATTTGCAATCT 60.420 45.455 0.00 0.00 41.95 2.40
2343 3124 1.937899 GCAGGCATCCAATTTGCAATC 59.062 47.619 0.00 0.00 41.95 2.67
2344 3125 1.557832 AGCAGGCATCCAATTTGCAAT 59.442 42.857 0.00 0.00 41.95 3.56
2357 3139 1.888512 GGTGATTTCTTCAAGCAGGCA 59.111 47.619 0.00 0.00 35.70 4.75
2358 3140 1.203287 GGGTGATTTCTTCAAGCAGGC 59.797 52.381 0.00 0.00 35.70 4.85
2360 3142 4.589216 TTTGGGTGATTTCTTCAAGCAG 57.411 40.909 0.00 0.00 35.70 4.24
2411 3193 3.763360 TGCATTAGGGTGAAATTGTGGAG 59.237 43.478 0.00 0.00 0.00 3.86
2420 3202 4.454678 CTCATTAGCTGCATTAGGGTGAA 58.545 43.478 1.02 0.00 0.00 3.18
2427 3209 3.216800 CTTGGCCTCATTAGCTGCATTA 58.783 45.455 3.32 0.00 0.00 1.90
2481 3263 4.342862 TCTGGCTAATAGGCTCAACATC 57.657 45.455 14.95 0.00 41.96 3.06
2493 3275 0.181114 TTGCGGCTCATCTGGCTAAT 59.819 50.000 0.00 0.00 0.00 1.73
2540 3322 2.427453 TCTCCGGCTACATCTTCTTCAC 59.573 50.000 0.00 0.00 0.00 3.18
2556 3338 3.119743 TGCAAATTCAAGCTTCATCTCCG 60.120 43.478 0.00 0.00 0.00 4.63
2561 3343 7.156673 AGTAAATGTGCAAATTCAAGCTTCAT 58.843 30.769 1.67 0.00 0.00 2.57
2568 3350 9.932699 CAATTTGAAGTAAATGTGCAAATTCAA 57.067 25.926 1.67 4.75 43.37 2.69
2605 3387 5.569227 CGGGAGTAGGAGTCTATCTATCGTT 60.569 48.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.