Multiple sequence alignment - TraesCS5A01G409200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G409200 chr5A 100.000 6103 0 0 1 6103 598874027 598880129 0.000000e+00 11271.0
1 TraesCS5A01G409200 chr5A 85.957 235 28 4 4030 4264 598877755 598877984 4.720000e-61 246.0
2 TraesCS5A01G409200 chr5A 85.957 235 28 4 3729 3958 598878056 598878290 4.720000e-61 246.0
3 TraesCS5A01G409200 chr5A 94.898 98 3 2 5622 5718 673184695 673184599 1.060000e-32 152.0
4 TraesCS5A01G409200 chr5A 93.137 102 5 2 5606 5706 565494901 565495001 1.370000e-31 148.0
5 TraesCS5A01G409200 chr5B 91.613 2480 156 21 1515 3970 588526900 588529351 0.000000e+00 3380.0
6 TraesCS5A01G409200 chr5B 91.169 1540 85 14 3987 5505 588529329 588530838 0.000000e+00 2043.0
7 TraesCS5A01G409200 chr5B 90.190 683 60 2 4543 5221 588568327 588569006 0.000000e+00 883.0
8 TraesCS5A01G409200 chr5B 80.856 1191 86 66 101 1183 588525431 588526587 0.000000e+00 806.0
9 TraesCS5A01G409200 chr5B 93.586 343 22 0 5744 6086 588573004 588573346 4.220000e-141 512.0
10 TraesCS5A01G409200 chr5B 89.167 360 33 3 5744 6103 588537166 588537519 1.560000e-120 444.0
11 TraesCS5A01G409200 chr5B 89.583 336 28 3 5770 6102 588535595 588535926 2.630000e-113 420.0
12 TraesCS5A01G409200 chr5B 91.078 269 16 4 5359 5624 588536840 588537103 2.090000e-94 357.0
13 TraesCS5A01G409200 chr5B 83.388 307 43 3 3390 3695 588528454 588528753 1.680000e-70 278.0
14 TraesCS5A01G409200 chr5B 85.141 249 28 7 3729 3970 588529372 588529618 4.720000e-61 246.0
15 TraesCS5A01G409200 chr5B 92.547 161 7 4 5466 5622 588530838 588530997 6.160000e-55 226.0
16 TraesCS5A01G409200 chr5B 96.610 59 1 1 5287 5345 588536795 588536852 5.040000e-16 97.1
17 TraesCS5A01G409200 chr5D 90.541 1829 93 35 887 2654 480376181 480377990 0.000000e+00 2346.0
18 TraesCS5A01G409200 chr5D 89.635 1698 105 16 3981 5618 480379385 480381071 0.000000e+00 2095.0
19 TraesCS5A01G409200 chr5D 88.986 690 61 5 2689 3366 480377992 480378678 0.000000e+00 839.0
20 TraesCS5A01G409200 chr5D 82.511 932 67 46 1 872 480375227 480376122 0.000000e+00 730.0
21 TraesCS5A01G409200 chr5D 89.415 359 32 3 5744 6102 480381131 480381483 1.210000e-121 448.0
22 TraesCS5A01G409200 chr5D 85.316 395 49 6 3564 3949 480378681 480379075 3.430000e-107 399.0
23 TraesCS5A01G409200 chr1B 96.040 101 3 1 5614 5713 604705679 604705779 4.890000e-36 163.0
24 TraesCS5A01G409200 chr4A 97.802 91 2 0 5620 5710 544888200 544888290 2.280000e-34 158.0
25 TraesCS5A01G409200 chr6D 94.845 97 5 0 5622 5718 289215039 289215135 1.060000e-32 152.0
26 TraesCS5A01G409200 chr3B 94.845 97 5 0 5619 5715 12765858 12765762 1.060000e-32 152.0
27 TraesCS5A01G409200 chr2D 93.204 103 3 3 5609 5707 42402276 42402378 1.370000e-31 148.0
28 TraesCS5A01G409200 chr1D 91.667 108 7 2 5601 5707 393480067 393480173 1.370000e-31 148.0
29 TraesCS5A01G409200 chr3D 90.909 110 9 1 5622 5731 14946973 14946865 4.930000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G409200 chr5A 598874027 598880129 6102 False 3921.000000 11271 90.638000 1 6103 3 chr5A.!!$F2 6102
1 TraesCS5A01G409200 chr5B 588525431 588530997 5566 False 1163.166667 3380 87.452333 101 5622 6 chr5B.!!$F1 5521
2 TraesCS5A01G409200 chr5B 588568327 588573346 5019 False 697.500000 883 91.888000 4543 6086 2 chr5B.!!$F3 1543
3 TraesCS5A01G409200 chr5B 588535595 588537519 1924 False 329.525000 444 91.609500 5287 6103 4 chr5B.!!$F2 816
4 TraesCS5A01G409200 chr5D 480375227 480381483 6256 False 1142.833333 2346 87.734000 1 6102 6 chr5D.!!$F1 6101

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 629 0.037590 TCCCAAATGCGGCAAGTAGT 59.962 50.0 6.82 0.0 0.00 2.73 F
639 707 0.321564 TGGAGATGCAAACCAGACCG 60.322 55.0 0.00 0.0 0.00 4.79 F
675 760 0.589708 CCAGTGGCATCATACGCATG 59.410 55.0 0.00 0.0 0.00 4.06 F
2633 2867 0.179936 GAAGGCTGACCATGAGGGAG 59.820 60.0 0.00 0.0 41.15 4.30 F
3313 3559 0.108138 GTAGTGAGAGGCCGCAACAT 60.108 55.0 9.88 0.0 0.00 2.71 F
4631 5176 0.389948 ACGCTCCCGTCAGTTTCATC 60.390 55.0 0.00 0.0 46.39 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1966 2179 0.539518 GGACCCTCTGAAGAGCTTCC 59.460 60.000 7.69 5.88 40.75 3.46 R
2540 2774 0.809385 CAGCAGCACCCATTTCAGAG 59.191 55.000 0.00 0.00 0.00 3.35 R
2651 2885 1.000739 AGCTCCTCTCTCTGCTGCT 59.999 57.895 0.00 0.00 34.19 4.24 R
4541 5086 0.536260 GCAGTCTCATGAGCAGGAGT 59.464 55.000 18.36 0.88 39.93 3.85 R
4664 5209 0.310854 GGAGGTTGTTGCCTTTGTCG 59.689 55.000 0.00 0.00 39.34 4.35 R
5967 10463 0.242825 TAGAGAAACTGTGCCGACCG 59.757 55.000 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.705825 GTGGCCAAAATTAGAAATGTTTGACT 59.294 34.615 7.24 0.00 33.70 3.41
62 63 9.026121 AGTACTAGCTAGTTATACAATGGATGG 57.974 37.037 30.40 0.00 37.73 3.51
68 69 7.401493 AGCTAGTTATACAATGGATGGCTATCT 59.599 37.037 10.15 0.00 33.68 1.98
71 72 8.671987 AGTTATACAATGGATGGCTATCTAGT 57.328 34.615 10.15 0.00 33.68 2.57
72 73 9.769677 AGTTATACAATGGATGGCTATCTAGTA 57.230 33.333 10.15 4.25 33.68 1.82
81 87 4.094830 TGGCTATCTAGTATGGTCACGA 57.905 45.455 0.00 0.00 0.00 4.35
200 211 1.672030 GGCAGGCAAAACCAATGGC 60.672 57.895 0.00 0.00 43.14 4.40
214 225 2.826777 AATGGCGCAGGAGGGAGTTG 62.827 60.000 10.83 0.00 0.00 3.16
279 298 1.233919 TGCGCAGTACTGAAAATGCA 58.766 45.000 27.08 21.22 38.60 3.96
280 299 1.811965 TGCGCAGTACTGAAAATGCAT 59.188 42.857 27.08 0.00 38.60 3.96
281 300 2.179589 GCGCAGTACTGAAAATGCATG 58.820 47.619 27.08 4.89 38.60 4.06
282 301 2.414559 GCGCAGTACTGAAAATGCATGT 60.415 45.455 27.08 0.00 38.60 3.21
287 306 6.362016 CGCAGTACTGAAAATGCATGTTTTAA 59.638 34.615 27.08 0.00 38.60 1.52
294 317 5.401972 TGAAAATGCATGTTTTAACTCGCAG 59.598 36.000 2.99 0.00 39.10 5.18
298 321 0.168128 ATGTTTTAACTCGCAGCCGC 59.832 50.000 0.00 0.00 0.00 6.53
315 342 0.734889 CGCACCTCAACCAATCATCC 59.265 55.000 0.00 0.00 0.00 3.51
319 346 3.539604 CACCTCAACCAATCATCCTCTC 58.460 50.000 0.00 0.00 0.00 3.20
320 347 3.199508 CACCTCAACCAATCATCCTCTCT 59.800 47.826 0.00 0.00 0.00 3.10
328 359 8.163408 TCAACCAATCATCCTCTCTCTTAAAAA 58.837 33.333 0.00 0.00 0.00 1.94
336 367 7.445402 TCATCCTCTCTCTTAAAAACTTTGGTG 59.555 37.037 0.00 0.00 0.00 4.17
337 368 5.531287 TCCTCTCTCTTAAAAACTTTGGTGC 59.469 40.000 0.00 0.00 0.00 5.01
342 373 8.730680 TCTCTCTTAAAAACTTTGGTGCATATC 58.269 33.333 0.00 0.00 0.00 1.63
345 376 8.177119 TCTTAAAAACTTTGGTGCATATCAGT 57.823 30.769 0.00 0.00 0.00 3.41
350 385 5.165961 ACTTTGGTGCATATCAGTACAGT 57.834 39.130 0.00 0.00 0.00 3.55
360 395 8.883731 GTGCATATCAGTACAGTACATTCTTTT 58.116 33.333 13.37 0.00 0.00 2.27
395 439 9.433153 GCTCAGTAGTACCTTATTTAAAACTGT 57.567 33.333 9.51 1.31 34.77 3.55
431 477 7.496529 TTTTTGTCAATGTCACAACCAAAAA 57.503 28.000 12.34 12.34 33.42 1.94
435 481 3.515502 TCAATGTCACAACCAAAAACCCA 59.484 39.130 0.00 0.00 0.00 4.51
436 482 3.535280 ATGTCACAACCAAAAACCCAC 57.465 42.857 0.00 0.00 0.00 4.61
441 487 4.865925 GTCACAACCAAAAACCCACTTTAC 59.134 41.667 0.00 0.00 0.00 2.01
452 498 3.558033 ACCCACTTTACGTTTTCCACAT 58.442 40.909 0.00 0.00 0.00 3.21
453 499 3.955551 ACCCACTTTACGTTTTCCACATT 59.044 39.130 0.00 0.00 0.00 2.71
454 500 5.131784 ACCCACTTTACGTTTTCCACATTA 58.868 37.500 0.00 0.00 0.00 1.90
456 502 6.941436 ACCCACTTTACGTTTTCCACATTATA 59.059 34.615 0.00 0.00 0.00 0.98
457 503 7.094677 ACCCACTTTACGTTTTCCACATTATAC 60.095 37.037 0.00 0.00 0.00 1.47
458 504 7.120138 CCCACTTTACGTTTTCCACATTATACT 59.880 37.037 0.00 0.00 0.00 2.12
459 505 8.173130 CCACTTTACGTTTTCCACATTATACTC 58.827 37.037 0.00 0.00 0.00 2.59
460 506 8.932791 CACTTTACGTTTTCCACATTATACTCT 58.067 33.333 0.00 0.00 0.00 3.24
461 507 9.148104 ACTTTACGTTTTCCACATTATACTCTC 57.852 33.333 0.00 0.00 0.00 3.20
462 508 8.483307 TTTACGTTTTCCACATTATACTCTCC 57.517 34.615 0.00 0.00 0.00 3.71
463 509 5.425630 ACGTTTTCCACATTATACTCTCCC 58.574 41.667 0.00 0.00 0.00 4.30
464 510 5.189145 ACGTTTTCCACATTATACTCTCCCT 59.811 40.000 0.00 0.00 0.00 4.20
465 511 5.523916 CGTTTTCCACATTATACTCTCCCTG 59.476 44.000 0.00 0.00 0.00 4.45
479 525 2.041485 TCTCCCTGCAAATCATGGTCAA 59.959 45.455 0.00 0.00 32.90 3.18
482 528 3.258872 TCCCTGCAAATCATGGTCAAAAG 59.741 43.478 0.00 0.00 32.90 2.27
532 585 3.606687 ACCACCTACTAATCAAAAGCCG 58.393 45.455 0.00 0.00 0.00 5.52
533 586 2.354821 CCACCTACTAATCAAAAGCCGC 59.645 50.000 0.00 0.00 0.00 6.53
571 624 2.762887 TGATTATTCCCAAATGCGGCAA 59.237 40.909 6.82 0.00 0.00 4.52
572 625 2.957491 TTATTCCCAAATGCGGCAAG 57.043 45.000 6.82 0.00 0.00 4.01
576 629 0.037590 TCCCAAATGCGGCAAGTAGT 59.962 50.000 6.82 0.00 0.00 2.73
593 661 4.538738 AGTAGTTTGCTTTTGGGTGGTAA 58.461 39.130 0.00 0.00 0.00 2.85
594 662 4.583073 AGTAGTTTGCTTTTGGGTGGTAAG 59.417 41.667 0.00 0.00 0.00 2.34
595 663 3.371034 AGTTTGCTTTTGGGTGGTAAGT 58.629 40.909 0.00 0.00 0.00 2.24
596 664 4.538738 AGTTTGCTTTTGGGTGGTAAGTA 58.461 39.130 0.00 0.00 0.00 2.24
639 707 0.321564 TGGAGATGCAAACCAGACCG 60.322 55.000 0.00 0.00 0.00 4.79
640 708 1.026718 GGAGATGCAAACCAGACCGG 61.027 60.000 0.00 0.00 42.50 5.28
660 740 2.286523 CCGGACAGAAGAGGCCAGT 61.287 63.158 5.01 0.00 0.00 4.00
675 760 0.589708 CCAGTGGCATCATACGCATG 59.410 55.000 0.00 0.00 0.00 4.06
676 761 1.302366 CAGTGGCATCATACGCATGT 58.698 50.000 0.00 0.00 33.57 3.21
677 762 2.482864 CAGTGGCATCATACGCATGTA 58.517 47.619 0.00 0.00 33.57 2.29
702 787 2.094675 CTTCCACGGCAATCAATCCTT 58.905 47.619 0.00 0.00 0.00 3.36
703 788 1.750193 TCCACGGCAATCAATCCTTC 58.250 50.000 0.00 0.00 0.00 3.46
704 789 0.740737 CCACGGCAATCAATCCTTCC 59.259 55.000 0.00 0.00 0.00 3.46
728 822 2.594303 CACCACCGCCTGAAAGCA 60.594 61.111 0.00 0.00 0.00 3.91
732 826 1.675310 CACCGCCTGAAAGCATCCA 60.675 57.895 0.00 0.00 0.00 3.41
739 833 1.341285 CCTGAAAGCATCCATCCACCA 60.341 52.381 0.00 0.00 0.00 4.17
741 835 1.106285 GAAAGCATCCATCCACCACC 58.894 55.000 0.00 0.00 0.00 4.61
744 838 2.271821 CATCCATCCACCACCGCA 59.728 61.111 0.00 0.00 0.00 5.69
747 841 4.415150 CCATCCACCACCGCAGCT 62.415 66.667 0.00 0.00 0.00 4.24
748 842 3.129502 CATCCACCACCGCAGCTG 61.130 66.667 10.11 10.11 0.00 4.24
752 846 4.994471 CACCACCGCAGCTGCAGA 62.994 66.667 36.03 0.00 42.21 4.26
753 847 4.025858 ACCACCGCAGCTGCAGAT 62.026 61.111 36.03 19.12 42.21 2.90
820 914 3.245052 ACTGACCCATTCCTCAAGAAAGG 60.245 47.826 0.00 0.00 42.04 3.11
821 915 2.716424 TGACCCATTCCTCAAGAAAGGT 59.284 45.455 1.40 1.40 44.07 3.50
822 916 3.913799 TGACCCATTCCTCAAGAAAGGTA 59.086 43.478 0.00 0.00 42.40 3.08
837 931 2.735259 AGGTAGGGAAAAGAGGTGGA 57.265 50.000 0.00 0.00 0.00 4.02
906 1045 1.537776 CGGCATTGTGTTTTTCAGGCA 60.538 47.619 0.00 0.00 0.00 4.75
956 1099 1.202475 GGTTTTGTTTCATGGTGCGGT 60.202 47.619 0.00 0.00 0.00 5.68
985 1133 3.986006 GGGCGTGTCGTCTGGTGA 61.986 66.667 0.00 0.00 0.00 4.02
999 1147 1.189524 TGGTGACGGACAGGTAAGGG 61.190 60.000 0.00 0.00 0.00 3.95
1000 1148 0.901580 GGTGACGGACAGGTAAGGGA 60.902 60.000 0.00 0.00 0.00 4.20
1001 1149 1.192428 GTGACGGACAGGTAAGGGAT 58.808 55.000 0.00 0.00 0.00 3.85
1004 1152 1.146263 CGGACAGGTAAGGGATGGC 59.854 63.158 0.00 0.00 0.00 4.40
1150 1324 4.269363 CGTCTCGGGGTATGTTATGTTTTC 59.731 45.833 0.00 0.00 0.00 2.29
1176 1351 1.203065 GTGTTTGCTTTGCACTCTGC 58.797 50.000 0.00 0.00 45.29 4.26
1204 1379 4.791974 CATTTCCTTTGCACTCAGTTCTC 58.208 43.478 0.00 0.00 0.00 2.87
1212 1387 1.193426 GCACTCAGTTCTCGTTCAAGC 59.807 52.381 0.00 0.00 0.00 4.01
1241 1422 7.288621 TGACTATGATGAACTGATGATACTGGT 59.711 37.037 0.00 0.00 0.00 4.00
1258 1439 3.576982 ACTGGTACTCATCGAAAAGACCA 59.423 43.478 14.80 14.80 34.44 4.02
1268 1449 7.607991 ACTCATCGAAAAGACCATGTAGAAATT 59.392 33.333 4.58 0.00 0.00 1.82
1269 1450 7.974675 TCATCGAAAAGACCATGTAGAAATTC 58.025 34.615 0.00 0.00 0.00 2.17
1281 1484 3.691118 TGTAGAAATTCTGATGGTGCTGC 59.309 43.478 5.64 0.00 0.00 5.25
1282 1485 2.799017 AGAAATTCTGATGGTGCTGCA 58.201 42.857 0.00 0.00 0.00 4.41
1286 1489 1.456296 TTCTGATGGTGCTGCATGAC 58.544 50.000 5.27 0.00 0.00 3.06
1287 1490 0.616891 TCTGATGGTGCTGCATGACT 59.383 50.000 5.27 0.00 0.00 3.41
1315 1525 1.456296 TGATGTCTGTTGCAGATGCC 58.544 50.000 1.72 0.00 42.73 4.40
1340 1550 4.142359 GCTCGAACTCTCAGAAACCATCTA 60.142 45.833 0.00 0.00 36.32 1.98
1435 1645 0.801251 CAGTAAGCAGAGCACAAGCC 59.199 55.000 0.00 0.00 43.56 4.35
1469 1679 0.677414 TGATGCATCTGCGCTCCAAA 60.677 50.000 26.32 0.00 45.83 3.28
1477 1687 3.827008 TCTGCGCTCCAAATCTTCTAT 57.173 42.857 9.73 0.00 0.00 1.98
1510 1720 2.842394 ATTGACCTCCACTGCGCTCG 62.842 60.000 9.73 1.70 0.00 5.03
1511 1721 3.749064 GACCTCCACTGCGCTCGA 61.749 66.667 9.73 0.00 0.00 4.04
1512 1722 3.069980 GACCTCCACTGCGCTCGAT 62.070 63.158 9.73 0.00 0.00 3.59
1513 1723 2.279120 CCTCCACTGCGCTCGATC 60.279 66.667 9.73 0.00 0.00 3.69
1526 1736 3.561213 CGATCGCAGCACCAGCAG 61.561 66.667 0.26 0.00 45.49 4.24
1549 1759 4.789075 CAGCACCAGCAATGCCGC 62.789 66.667 0.00 0.00 44.53 6.53
2152 2365 1.521840 CGAAGATTCAGATGCTGAGCG 59.478 52.381 0.00 0.00 41.75 5.03
2153 2366 2.548875 GAAGATTCAGATGCTGAGCGT 58.451 47.619 0.00 0.00 41.75 5.07
2206 2419 2.416547 ACGACAAATTTCAGAGCCATCG 59.583 45.455 0.00 0.00 0.00 3.84
2209 2431 3.420893 ACAAATTTCAGAGCCATCGGAA 58.579 40.909 0.00 0.00 37.78 4.30
2211 2433 4.142315 ACAAATTTCAGAGCCATCGGAATG 60.142 41.667 0.00 0.00 39.03 2.67
2219 2441 0.745845 GCCATCGGAATGCAGACAGT 60.746 55.000 0.00 0.00 0.00 3.55
2228 2450 3.594134 GAATGCAGACAGTAGCTCAGTT 58.406 45.455 0.00 0.00 0.00 3.16
2244 2466 4.753233 CTCAGTTATTCAGTCTGGTCCAG 58.247 47.826 13.21 13.21 0.00 3.86
2249 2471 2.046507 CAGTCTGGTCCAGGCAGC 60.047 66.667 25.26 10.26 38.73 5.25
2339 2561 1.452833 GCTGATGGGGCTGGAGAAC 60.453 63.158 0.00 0.00 0.00 3.01
2537 2771 2.623416 GGAGTGGAAGACAAACTTTGGG 59.377 50.000 6.47 0.00 39.13 4.12
2540 2774 2.361119 GTGGAAGACAAACTTTGGGGAC 59.639 50.000 6.47 0.00 39.13 4.46
2589 2823 1.133823 ACAGTTCATCACACCCTGCAA 60.134 47.619 0.00 0.00 0.00 4.08
2593 2827 0.890542 TCATCACACCCTGCAACTGC 60.891 55.000 0.00 0.00 42.50 4.40
2630 2864 0.622665 AAGGAAGGCTGACCATGAGG 59.377 55.000 12.39 0.00 39.06 3.86
2633 2867 0.179936 GAAGGCTGACCATGAGGGAG 59.820 60.000 0.00 0.00 41.15 4.30
2651 2885 2.501723 GGAGGTGCTGAGAAAGATGGTA 59.498 50.000 0.00 0.00 0.00 3.25
2669 2903 0.258484 TAGCAGCAGAGAGAGGAGCT 59.742 55.000 0.00 0.00 37.95 4.09
2681 2915 4.978099 AGAGAGGAGCTGATGAAAAACAA 58.022 39.130 0.00 0.00 0.00 2.83
2683 2917 4.978099 AGAGGAGCTGATGAAAAACAAGA 58.022 39.130 0.00 0.00 0.00 3.02
2686 2920 5.136105 AGGAGCTGATGAAAAACAAGAAGT 58.864 37.500 0.00 0.00 0.00 3.01
2687 2921 6.299141 AGGAGCTGATGAAAAACAAGAAGTA 58.701 36.000 0.00 0.00 0.00 2.24
2690 2924 7.360776 GGAGCTGATGAAAAACAAGAAGTAGAG 60.361 40.741 0.00 0.00 0.00 2.43
2719 2953 3.758993 TCCATGAGGACAAGGGGAT 57.241 52.632 0.00 0.00 39.61 3.85
2723 2957 1.064166 CATGAGGACAAGGGGATTGCT 60.064 52.381 0.00 0.00 43.15 3.91
2747 2981 5.009010 TGAAGAAATCAAACTGCAGAACTCC 59.991 40.000 23.35 1.54 34.30 3.85
2793 3027 4.855298 TCGGGTAAGAGGATGGATTTTT 57.145 40.909 0.00 0.00 0.00 1.94
2851 3085 3.587923 CTGTCAAGGAAGAGAAGCAGAG 58.412 50.000 0.00 0.00 0.00 3.35
2872 3106 0.740516 GCTCAGGAGAAGAGTGCAGC 60.741 60.000 0.00 0.00 35.55 5.25
2875 3109 1.020333 CAGGAGAAGAGTGCAGCAGC 61.020 60.000 0.00 0.00 42.57 5.25
2894 3128 0.251077 CTGGAAAGAAGCAGGCCACT 60.251 55.000 5.01 0.00 0.00 4.00
2936 3170 2.508439 GACGGCGAGGCGAAATCA 60.508 61.111 25.16 0.00 0.00 2.57
2955 3189 1.904990 AAGGAAGGCGAGGGAGAAGC 61.905 60.000 0.00 0.00 0.00 3.86
3035 3269 3.005554 AGATCAGGTCAAACATCAAGCG 58.994 45.455 0.00 0.00 0.00 4.68
3138 3372 5.592054 GGAAGTTGGAAAACAAGAAGAAGG 58.408 41.667 0.00 0.00 40.38 3.46
3188 3422 6.650807 TGAAAAAGAAGCCTGAGTATACTGTG 59.349 38.462 10.90 2.48 0.00 3.66
3214 3454 5.041191 ACACAACAGGAGAATGAAGAACT 57.959 39.130 0.00 0.00 0.00 3.01
3306 3552 1.762957 TGGCAATAGTAGTGAGAGGCC 59.237 52.381 0.88 0.00 40.51 5.19
3310 3556 1.776662 ATAGTAGTGAGAGGCCGCAA 58.223 50.000 9.88 0.00 0.00 4.85
3313 3559 0.108138 GTAGTGAGAGGCCGCAACAT 60.108 55.000 9.88 0.00 0.00 2.71
3326 3572 0.453390 GCAACATAACTGGAGCAGCC 59.547 55.000 0.00 0.00 34.37 4.85
3412 3658 2.844224 GAACCGCAAAATCGTCGGGC 62.844 60.000 4.89 0.00 46.78 6.13
3456 3702 3.380320 CCGGAAGTTGGAAAACAAGAAGT 59.620 43.478 0.00 0.00 40.38 3.01
3476 3722 1.762370 TCACTGTTGTCAGAAGCAGGA 59.238 47.619 2.17 0.00 43.76 3.86
3494 3740 4.880696 GCAGGACATATGAGAAAGAAGCTT 59.119 41.667 10.38 0.00 0.00 3.74
3499 3745 7.124901 AGGACATATGAGAAAGAAGCTTGAGTA 59.875 37.037 10.38 0.00 0.00 2.59
3540 3786 5.435291 AGGAGAATGAGGTAGATGCAAAAG 58.565 41.667 0.00 0.00 0.00 2.27
3589 3835 1.226686 GCAGATAGCACTCATGGCGG 61.227 60.000 0.00 0.00 44.79 6.13
3615 3861 2.031157 GGTTTGTCGGAACCATTGACAG 60.031 50.000 10.19 0.00 46.66 3.51
3747 4002 3.569701 TGCAAGTGAGGATTTGAAGTTCC 59.430 43.478 0.00 0.00 0.00 3.62
3749 4004 4.279420 GCAAGTGAGGATTTGAAGTTCCTT 59.721 41.667 0.00 0.00 42.48 3.36
3757 4012 6.729428 AGGATTTGAAGTTCCTTGATCAGAT 58.271 36.000 0.00 0.00 39.36 2.90
3835 4090 3.063316 TCCGTGCACACATTTTATCATCG 59.937 43.478 18.64 0.00 0.00 3.84
3843 4098 9.103861 TGCACACATTTTATCATCGTTCTAATA 57.896 29.630 0.00 0.00 0.00 0.98
3856 4111 6.730960 TCGTTCTAATAAAGCGTGGAATTT 57.269 33.333 0.00 0.00 0.00 1.82
3857 4112 6.539324 TCGTTCTAATAAAGCGTGGAATTTG 58.461 36.000 0.00 0.00 0.00 2.32
3865 4120 4.864704 AAGCGTGGAATTTGGTGTAAAT 57.135 36.364 0.00 0.00 40.67 1.40
3876 4131 5.999205 TTTGGTGTAAATTGCAGGATGAT 57.001 34.783 0.00 0.00 39.69 2.45
3952 4207 0.950116 AGAACAGCAGCAGCAAGAAC 59.050 50.000 3.17 0.00 45.49 3.01
3966 4221 4.447054 CAGCAAGAACAACAACAACAACAA 59.553 37.500 0.00 0.00 0.00 2.83
3971 4226 5.352284 AGAACAACAACAACAACAACAACA 58.648 33.333 0.00 0.00 0.00 3.33
3973 4228 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3974 4229 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3975 4230 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3976 4231 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3978 4233 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3979 4234 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3980 4235 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
3981 4236 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3982 4237 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
3990 4523 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3996 4529 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
3999 4532 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
4002 4535 5.525378 ACAACAACAACAACAACAACAACAT 59.475 32.000 0.00 0.00 0.00 2.71
4120 4653 1.468054 CCCTGCTTAAACAATCTGCGC 60.468 52.381 0.00 0.00 0.00 6.09
4135 4668 1.783711 CTGCGCGTGTGCAAAATTTTA 59.216 42.857 8.43 0.00 45.74 1.52
4307 4852 1.153745 CCGAGGAGGAAGAACAGCG 60.154 63.158 0.00 0.00 45.00 5.18
4332 4877 6.327934 GCAACAAATGATAGTGAAAGAGCAT 58.672 36.000 0.00 0.00 0.00 3.79
4364 4909 2.479566 ACGCATGTTCTTGATGTCCT 57.520 45.000 0.00 0.00 0.00 3.85
4365 4910 3.610040 ACGCATGTTCTTGATGTCCTA 57.390 42.857 0.00 0.00 0.00 2.94
4366 4911 4.142609 ACGCATGTTCTTGATGTCCTAT 57.857 40.909 0.00 0.00 0.00 2.57
4379 4924 6.710597 TGATGTCCTATTGTCCTGTAGTAC 57.289 41.667 0.00 0.00 0.00 2.73
4479 5024 3.764972 TCATACCACAACGTCCATCAGTA 59.235 43.478 0.00 0.00 0.00 2.74
4496 5041 6.127535 CCATCAGTACTGAAAATTTGCAGGAT 60.128 38.462 28.43 17.19 43.58 3.24
4499 5044 6.072508 TCAGTACTGAAAATTTGCAGGATCAC 60.073 38.462 26.59 18.22 36.53 3.06
4541 5086 3.498397 GCGATTCTTTGACAGAGAACCAA 59.502 43.478 10.39 0.00 36.08 3.67
4631 5176 0.389948 ACGCTCCCGTCAGTTTCATC 60.390 55.000 0.00 0.00 46.39 2.92
4637 5182 2.725644 CGTCAGTTTCATCGACGCT 58.274 52.632 0.00 0.00 44.99 5.07
4670 5215 0.595567 CGAACTGGTCGGTCGACAAA 60.596 55.000 22.35 10.85 46.45 2.83
4677 5222 1.144276 TCGGTCGACAAAGGCAACA 59.856 52.632 18.91 0.00 41.41 3.33
4691 5236 0.250513 GCAACAACCTCCTCTCCGAT 59.749 55.000 0.00 0.00 0.00 4.18
4724 5269 1.882623 GTGGTCAGAAGGAAAGGCAAG 59.117 52.381 0.00 0.00 0.00 4.01
4725 5270 1.774254 TGGTCAGAAGGAAAGGCAAGA 59.226 47.619 0.00 0.00 0.00 3.02
4838 5383 0.611896 TCGAGAGCCTGGACATGTCA 60.612 55.000 26.47 12.17 0.00 3.58
4865 5410 0.835543 AGAGAACTCAGCAGCAGGGT 60.836 55.000 0.00 0.00 0.00 4.34
4973 5518 3.862991 TGGAACCGCGTGTGGGAA 61.863 61.111 4.92 0.00 0.00 3.97
4980 5525 4.980805 GCGTGTGGGAACTGCCGA 62.981 66.667 0.00 0.00 37.63 5.54
4997 5542 1.218316 GATGGAGAAGGGCGACGTT 59.782 57.895 0.00 0.00 42.01 3.99
5000 5545 1.737008 GGAGAAGGGCGACGTTGTC 60.737 63.158 12.11 12.11 44.89 3.18
5027 5572 3.791320 TCTGGAGAAGAACATACTGGGT 58.209 45.455 0.00 0.00 29.54 4.51
5072 5617 3.607741 GGATCTCATCGGAGTATCGGTA 58.392 50.000 0.00 0.00 42.05 4.02
5138 5710 8.210946 TGGAGAGAAAACTTTTAGAGTGATTGA 58.789 33.333 0.00 0.00 39.00 2.57
5144 5716 8.697507 AAAACTTTTAGAGTGATTGAGGTCAT 57.302 30.769 0.00 0.00 39.00 3.06
5238 5821 4.935808 AGGAAATATGTGTGTTCCGTTCTC 59.064 41.667 0.00 0.00 44.64 2.87
5239 5822 4.094442 GGAAATATGTGTGTTCCGTTCTCC 59.906 45.833 0.00 0.00 32.03 3.71
5242 5825 2.702592 TGTGTGTTCCGTTCTCCTTT 57.297 45.000 0.00 0.00 0.00 3.11
5453 8028 2.747446 CTGGGATTTTGGTTCGAACGAT 59.253 45.455 21.34 12.42 0.00 3.73
5470 8045 1.623359 GATGTGTGAGAGCTGTCGAC 58.377 55.000 9.11 9.11 0.00 4.20
5568 8940 8.412456 CAGATCTATATAGTGGCTGGAACATAG 58.588 40.741 9.58 0.00 38.20 2.23
5584 8958 8.354711 TGGAACATAGGCACACATTTTTATTA 57.645 30.769 0.00 0.00 0.00 0.98
5624 9776 4.754372 CACACATGTGCTGAATTGTACT 57.246 40.909 25.68 0.00 39.39 2.73
5625 9777 4.715896 CACACATGTGCTGAATTGTACTC 58.284 43.478 25.68 0.00 39.39 2.59
5627 9779 3.127548 CACATGTGCTGAATTGTACTCCC 59.872 47.826 13.94 0.00 0.00 4.30
5628 9780 3.009473 ACATGTGCTGAATTGTACTCCCT 59.991 43.478 0.00 0.00 0.00 4.20
5629 9781 3.334583 TGTGCTGAATTGTACTCCCTC 57.665 47.619 0.00 0.00 0.00 4.30
5630 9782 2.906389 TGTGCTGAATTGTACTCCCTCT 59.094 45.455 0.00 0.00 0.00 3.69
5632 9784 2.906389 TGCTGAATTGTACTCCCTCTGT 59.094 45.455 0.00 0.00 0.00 3.41
5633 9785 4.081642 GTGCTGAATTGTACTCCCTCTGTA 60.082 45.833 0.00 0.00 0.00 2.74
5634 9786 4.530553 TGCTGAATTGTACTCCCTCTGTAA 59.469 41.667 0.00 0.00 0.00 2.41
5636 9788 5.351740 GCTGAATTGTACTCCCTCTGTAAAC 59.648 44.000 0.00 0.00 0.00 2.01
5637 9789 6.681729 TGAATTGTACTCCCTCTGTAAACT 57.318 37.500 0.00 0.00 0.00 2.66
5640 9792 8.822805 TGAATTGTACTCCCTCTGTAAACTAAT 58.177 33.333 0.00 0.00 0.00 1.73
5648 9800 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
5649 9801 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
5650 9802 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
5671 9823 9.250624 GAGCGTTTAGATTACTCAAATAGTGAT 57.749 33.333 0.00 0.00 39.39 3.06
5672 9824 9.250624 AGCGTTTAGATTACTCAAATAGTGATC 57.749 33.333 2.62 2.62 46.58 2.92
5700 9852 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
5701 9853 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
5702 9854 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
5749 10245 1.556911 ACGGCAGATGGAGATGACTTT 59.443 47.619 0.00 0.00 0.00 2.66
5805 10301 0.242017 GTCATGCTCCAAGTTGCACC 59.758 55.000 0.00 0.00 42.26 5.01
5806 10302 0.895100 TCATGCTCCAAGTTGCACCC 60.895 55.000 0.00 0.00 42.26 4.61
5807 10303 1.153524 ATGCTCCAAGTTGCACCCA 59.846 52.632 0.00 0.00 42.26 4.51
5810 10306 1.799258 GCTCCAAGTTGCACCCACAG 61.799 60.000 0.00 0.00 0.00 3.66
5835 10331 3.055530 AGAGCGAAGAAGATGACCAATGT 60.056 43.478 0.00 0.00 0.00 2.71
5933 10429 6.205101 CTTGCAAATGAAGCTAGGATTTCT 57.795 37.500 0.00 0.00 32.43 2.52
5962 10458 3.549423 CCAAATGAAGCTATGCGACATGG 60.549 47.826 0.00 1.56 32.37 3.66
6037 10533 2.905415 TTCTGATGCCACCCATTTCT 57.095 45.000 0.00 0.00 33.29 2.52
6041 10537 0.174162 GATGCCACCCATTTCTGCAC 59.826 55.000 0.00 0.00 34.33 4.57
6086 10582 1.800586 ACACATGTTGCATCTCGTGTC 59.199 47.619 13.62 0.00 32.37 3.67
6087 10583 2.071540 CACATGTTGCATCTCGTGTCT 58.928 47.619 0.00 0.00 32.43 3.41
6088 10584 2.071540 ACATGTTGCATCTCGTGTCTG 58.928 47.619 0.00 0.00 0.00 3.51
6089 10585 2.071540 CATGTTGCATCTCGTGTCTGT 58.928 47.619 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 6.705825 AGTCAAACATTTCTAATTTTGGCCAC 59.294 34.615 3.88 0.00 34.73 5.01
5 6 6.825610 AGTCAAACATTTCTAATTTTGGCCA 58.174 32.000 0.00 0.00 34.73 5.36
34 35 8.632906 TCCATTGTATAACTAGCTAGTACTCC 57.367 38.462 26.29 14.91 34.99 3.85
36 37 9.026121 CCATCCATTGTATAACTAGCTAGTACT 57.974 37.037 26.29 17.93 34.99 2.73
38 39 7.674348 AGCCATCCATTGTATAACTAGCTAGTA 59.326 37.037 26.29 14.71 34.99 1.82
39 40 6.498651 AGCCATCCATTGTATAACTAGCTAGT 59.501 38.462 20.95 20.95 38.39 2.57
57 58 4.142359 CGTGACCATACTAGATAGCCATCC 60.142 50.000 0.00 0.00 0.00 3.51
62 63 5.692613 ACTTCGTGACCATACTAGATAGC 57.307 43.478 0.00 0.00 0.00 2.97
68 69 8.913487 TCAGAATATACTTCGTGACCATACTA 57.087 34.615 0.00 0.00 0.00 1.82
73 74 9.476202 CATTTATCAGAATATACTTCGTGACCA 57.524 33.333 0.00 0.00 0.00 4.02
110 121 0.616679 TTAAGGGCCTACAGCGACCT 60.617 55.000 6.41 0.00 45.17 3.85
200 211 0.457851 CTACTCAACTCCCTCCTGCG 59.542 60.000 0.00 0.00 0.00 5.18
214 225 2.426381 GGGGCTGTACTGTACACTACTC 59.574 54.545 16.26 8.94 34.46 2.59
279 298 0.168128 GCGGCTGCGAGTTAAAACAT 59.832 50.000 0.00 0.00 0.00 2.71
280 299 1.572447 GCGGCTGCGAGTTAAAACA 59.428 52.632 0.00 0.00 0.00 2.83
281 300 4.434876 GCGGCTGCGAGTTAAAAC 57.565 55.556 0.00 0.00 0.00 2.43
294 317 1.315257 ATGATTGGTTGAGGTGCGGC 61.315 55.000 0.00 0.00 0.00 6.53
298 321 3.199508 AGAGAGGATGATTGGTTGAGGTG 59.800 47.826 0.00 0.00 0.00 4.00
306 329 8.572855 AAGTTTTTAAGAGAGAGGATGATTGG 57.427 34.615 0.00 0.00 0.00 3.16
315 342 6.377327 TGCACCAAAGTTTTTAAGAGAGAG 57.623 37.500 0.00 0.00 0.00 3.20
319 346 8.299570 ACTGATATGCACCAAAGTTTTTAAGAG 58.700 33.333 0.00 0.00 0.00 2.85
320 347 8.177119 ACTGATATGCACCAAAGTTTTTAAGA 57.823 30.769 0.00 0.00 0.00 2.10
328 359 5.165961 ACTGTACTGATATGCACCAAAGT 57.834 39.130 6.77 0.00 0.00 2.66
368 403 9.654663 CAGTTTTAAATAAGGTACTACTGAGCT 57.345 33.333 5.37 0.00 38.49 4.09
369 404 9.433153 ACAGTTTTAAATAAGGTACTACTGAGC 57.567 33.333 14.59 0.00 38.49 4.26
428 474 4.220163 TGTGGAAAACGTAAAGTGGGTTTT 59.780 37.500 0.00 1.21 44.09 2.43
431 477 3.002038 TGTGGAAAACGTAAAGTGGGT 57.998 42.857 0.00 0.00 0.00 4.51
435 481 9.148104 GAGAGTATAATGTGGAAAACGTAAAGT 57.852 33.333 0.00 0.00 0.00 2.66
436 482 8.601476 GGAGAGTATAATGTGGAAAACGTAAAG 58.399 37.037 0.00 0.00 0.00 1.85
441 487 5.523916 CAGGGAGAGTATAATGTGGAAAACG 59.476 44.000 0.00 0.00 0.00 3.60
462 508 3.592059 CCTTTTGACCATGATTTGCAGG 58.408 45.455 0.00 0.00 0.00 4.85
463 509 3.258872 TCCCTTTTGACCATGATTTGCAG 59.741 43.478 0.00 0.00 0.00 4.41
464 510 3.237746 TCCCTTTTGACCATGATTTGCA 58.762 40.909 0.00 0.00 0.00 4.08
465 511 3.368739 CCTCCCTTTTGACCATGATTTGC 60.369 47.826 0.00 0.00 0.00 3.68
479 525 3.309629 GGTTAGGTTAATGCCCTCCCTTT 60.310 47.826 0.00 0.00 33.35 3.11
482 528 1.567175 TGGTTAGGTTAATGCCCTCCC 59.433 52.381 0.00 0.00 33.35 4.30
532 585 3.423539 TCACCCATAATATCTGCCTGC 57.576 47.619 0.00 0.00 0.00 4.85
533 586 7.284034 GGAATAATCACCCATAATATCTGCCTG 59.716 40.741 0.00 0.00 0.00 4.85
571 624 3.026707 ACCACCCAAAAGCAAACTACT 57.973 42.857 0.00 0.00 0.00 2.57
572 625 4.340097 ACTTACCACCCAAAAGCAAACTAC 59.660 41.667 0.00 0.00 0.00 2.73
576 629 4.538738 ACTACTTACCACCCAAAAGCAAA 58.461 39.130 0.00 0.00 0.00 3.68
593 661 3.157087 CCCACATTCCAAGCAAACTACT 58.843 45.455 0.00 0.00 0.00 2.57
594 662 2.890945 ACCCACATTCCAAGCAAACTAC 59.109 45.455 0.00 0.00 0.00 2.73
595 663 2.890311 CACCCACATTCCAAGCAAACTA 59.110 45.455 0.00 0.00 0.00 2.24
596 664 1.688197 CACCCACATTCCAAGCAAACT 59.312 47.619 0.00 0.00 0.00 2.66
639 707 2.579738 GCCTCTTCTGTCCGGTCC 59.420 66.667 0.00 0.00 0.00 4.46
640 708 2.232298 CTGGCCTCTTCTGTCCGGTC 62.232 65.000 3.32 0.00 0.00 4.79
660 740 2.908688 ACTACATGCGTATGATGCCA 57.091 45.000 20.86 0.00 37.73 4.92
675 760 3.592059 TGATTGCCGTGGAAGTTACTAC 58.408 45.455 0.00 0.00 0.00 2.73
676 761 3.965379 TGATTGCCGTGGAAGTTACTA 57.035 42.857 0.00 0.00 0.00 1.82
677 762 2.851263 TGATTGCCGTGGAAGTTACT 57.149 45.000 0.00 0.00 0.00 2.24
702 787 3.695606 GCGGTGGTGAGAGCAGGA 61.696 66.667 0.00 0.00 0.00 3.86
703 788 4.767255 GGCGGTGGTGAGAGCAGG 62.767 72.222 0.00 0.00 0.00 4.85
704 789 3.699894 AGGCGGTGGTGAGAGCAG 61.700 66.667 0.00 0.00 0.00 4.24
728 822 2.591753 CTGCGGTGGTGGATGGAT 59.408 61.111 0.00 0.00 0.00 3.41
748 842 2.514824 GTCCGGGGAGCAATCTGC 60.515 66.667 0.00 0.00 45.46 4.26
750 844 3.470888 CCGTCCGGGGAGCAATCT 61.471 66.667 0.00 0.00 0.00 2.40
751 845 3.467226 TCCGTCCGGGGAGCAATC 61.467 66.667 0.00 0.00 36.01 2.67
752 846 3.782443 GTCCGTCCGGGGAGCAAT 61.782 66.667 0.00 0.00 36.58 3.56
775 869 4.354943 AGGGGAGTGAGGTGGGGG 62.355 72.222 0.00 0.00 0.00 5.40
789 883 1.484240 GAATGGGTCAGTGAGAGAGGG 59.516 57.143 0.00 0.00 0.00 4.30
820 914 2.547990 TCCTCCACCTCTTTTCCCTAC 58.452 52.381 0.00 0.00 0.00 3.18
821 915 3.285290 TTCCTCCACCTCTTTTCCCTA 57.715 47.619 0.00 0.00 0.00 3.53
822 916 2.133858 TTCCTCCACCTCTTTTCCCT 57.866 50.000 0.00 0.00 0.00 4.20
837 931 0.606673 GCAAGGCCTCTCGTTTTCCT 60.607 55.000 5.23 0.00 0.00 3.36
906 1045 1.271217 GGAAAGAAGGTTAGGTGCGGT 60.271 52.381 0.00 0.00 0.00 5.68
941 1084 1.794151 CTGCACCGCACCATGAAACA 61.794 55.000 0.00 0.00 33.79 2.83
979 1127 0.246635 CCTTACCTGTCCGTCACCAG 59.753 60.000 0.00 0.00 0.00 4.00
985 1133 1.623542 GCCATCCCTTACCTGTCCGT 61.624 60.000 0.00 0.00 0.00 4.69
1102 1264 4.299316 GGCATTCGACGCCGATGC 62.299 66.667 15.95 15.95 45.10 3.91
1139 1313 2.144730 CACCGACGGGAAAACATAACA 58.855 47.619 20.00 0.00 36.97 2.41
1150 1324 1.008995 CAAAGCAAACACCGACGGG 60.009 57.895 20.00 9.81 40.11 5.28
1204 1379 4.176271 TCATCATAGTCACTGCTTGAACG 58.824 43.478 0.00 0.00 35.39 3.95
1212 1387 8.358895 AGTATCATCAGTTCATCATAGTCACTG 58.641 37.037 0.00 0.00 36.91 3.66
1241 1422 6.769134 TCTACATGGTCTTTTCGATGAGTA 57.231 37.500 0.00 0.00 0.00 2.59
1258 1439 4.337555 GCAGCACCATCAGAATTTCTACAT 59.662 41.667 0.00 0.00 0.00 2.29
1268 1449 0.616891 AGTCATGCAGCACCATCAGA 59.383 50.000 0.00 0.00 0.00 3.27
1269 1450 1.938577 GTAGTCATGCAGCACCATCAG 59.061 52.381 0.00 0.00 0.00 2.90
1281 1484 7.606858 ACAGACATCAAATTCAGTAGTCATG 57.393 36.000 0.00 0.00 0.00 3.07
1282 1485 7.361542 GCAACAGACATCAAATTCAGTAGTCAT 60.362 37.037 0.00 0.00 0.00 3.06
1286 1489 6.148315 TCTGCAACAGACATCAAATTCAGTAG 59.852 38.462 0.00 0.00 35.39 2.57
1287 1490 5.997129 TCTGCAACAGACATCAAATTCAGTA 59.003 36.000 0.00 0.00 35.39 2.74
1315 1525 2.288457 TGGTTTCTGAGAGTTCGAGCAG 60.288 50.000 1.01 0.00 0.00 4.24
1324 1534 4.187694 GGCTTGTAGATGGTTTCTGAGAG 58.812 47.826 0.00 0.00 35.79 3.20
1369 1579 4.637489 CTGCTCGATCGAGGGGCG 62.637 72.222 38.18 19.89 42.19 6.13
1383 1593 1.862806 GTCGTTGCTTCTGGTCTGC 59.137 57.895 0.00 0.00 0.00 4.26
1384 1594 1.284982 CCGTCGTTGCTTCTGGTCTG 61.285 60.000 0.00 0.00 0.00 3.51
1435 1645 2.302445 TGCATCAAGATTTTGGGTTGGG 59.698 45.455 0.00 0.00 34.97 4.12
1469 1679 6.645790 ATTGGTTACGACGGTATAGAAGAT 57.354 37.500 0.00 0.00 0.00 2.40
1477 1687 2.562298 AGGTCAATTGGTTACGACGGTA 59.438 45.455 5.42 0.00 0.00 4.02
1526 1736 2.576832 ATTGCTGGTGCTGGGTTGC 61.577 57.895 0.00 0.00 40.48 4.17
1653 1866 2.887568 GACGACGGCATGCTCTGG 60.888 66.667 18.92 7.68 0.00 3.86
1966 2179 0.539518 GGACCCTCTGAAGAGCTTCC 59.460 60.000 7.69 5.88 40.75 3.46
2152 2365 1.465777 GCATGGAAGCATTTTTGGCAC 59.534 47.619 0.00 0.00 0.00 5.01
2153 2366 1.071857 TGCATGGAAGCATTTTTGGCA 59.928 42.857 0.00 0.00 40.11 4.92
2206 2419 2.093764 ACTGAGCTACTGTCTGCATTCC 60.094 50.000 8.11 0.00 0.00 3.01
2209 2431 5.105187 TGAATAACTGAGCTACTGTCTGCAT 60.105 40.000 8.11 0.00 0.00 3.96
2211 2433 4.748892 TGAATAACTGAGCTACTGTCTGC 58.251 43.478 0.00 0.00 0.00 4.26
2219 2441 4.402793 GGACCAGACTGAATAACTGAGCTA 59.597 45.833 3.32 0.00 34.07 3.32
2228 2450 1.833630 CTGCCTGGACCAGACTGAATA 59.166 52.381 23.77 0.00 32.44 1.75
2244 2466 1.093159 CTGTTGATCTTGGAGCTGCC 58.907 55.000 1.53 0.00 37.10 4.85
2249 2471 3.436015 CAGAAGCACTGTTGATCTTGGAG 59.564 47.826 0.00 0.00 41.30 3.86
2339 2561 2.504244 GACGTCGACGAAGGCAGG 60.504 66.667 41.52 12.99 43.02 4.85
2511 2736 1.420138 GTTTGTCTTCCACTCCCCTGA 59.580 52.381 0.00 0.00 0.00 3.86
2537 2771 1.457346 CAGCACCCATTTCAGAGTCC 58.543 55.000 0.00 0.00 0.00 3.85
2540 2774 0.809385 CAGCAGCACCCATTTCAGAG 59.191 55.000 0.00 0.00 0.00 3.35
2589 2823 2.941415 GCCTGCTATTACCAGTTGCAGT 60.941 50.000 11.47 0.00 46.60 4.40
2593 2827 2.684881 CCTTGCCTGCTATTACCAGTTG 59.315 50.000 0.00 0.00 0.00 3.16
2594 2828 2.576191 TCCTTGCCTGCTATTACCAGTT 59.424 45.455 0.00 0.00 0.00 3.16
2596 2830 3.209410 CTTCCTTGCCTGCTATTACCAG 58.791 50.000 0.00 0.00 0.00 4.00
2597 2831 2.092429 CCTTCCTTGCCTGCTATTACCA 60.092 50.000 0.00 0.00 0.00 3.25
2598 2832 2.576615 CCTTCCTTGCCTGCTATTACC 58.423 52.381 0.00 0.00 0.00 2.85
2599 2833 1.950216 GCCTTCCTTGCCTGCTATTAC 59.050 52.381 0.00 0.00 0.00 1.89
2621 2855 1.222936 CAGCACCTCCCTCATGGTC 59.777 63.158 0.00 0.00 33.75 4.02
2630 2864 1.280421 ACCATCTTTCTCAGCACCTCC 59.720 52.381 0.00 0.00 0.00 4.30
2633 2867 2.284190 GCTACCATCTTTCTCAGCACC 58.716 52.381 0.00 0.00 0.00 5.01
2651 2885 1.000739 AGCTCCTCTCTCTGCTGCT 59.999 57.895 0.00 0.00 34.19 4.24
2669 2903 7.735917 TCTCCTCTACTTCTTGTTTTTCATCA 58.264 34.615 0.00 0.00 0.00 3.07
2681 2915 4.418526 TGGATGATCCTCTCCTCTACTTCT 59.581 45.833 13.44 0.00 37.46 2.85
2683 2917 4.823364 TGGATGATCCTCTCCTCTACTT 57.177 45.455 13.44 0.00 37.46 2.24
2686 2920 4.264307 CCTCATGGATGATCCTCTCCTCTA 60.264 50.000 13.44 0.00 37.46 2.43
2687 2921 3.502672 CCTCATGGATGATCCTCTCCTCT 60.503 52.174 13.44 0.00 37.46 3.69
2690 2924 2.566724 GTCCTCATGGATGATCCTCTCC 59.433 54.545 13.44 0.00 45.29 3.71
2715 2949 5.166398 CAGTTTGATTTCTTCAGCAATCCC 58.834 41.667 0.00 0.00 35.27 3.85
2716 2950 4.624452 GCAGTTTGATTTCTTCAGCAATCC 59.376 41.667 0.00 0.00 35.27 3.01
2718 2952 5.010314 TCTGCAGTTTGATTTCTTCAGCAAT 59.990 36.000 14.67 0.00 33.10 3.56
2719 2953 4.338964 TCTGCAGTTTGATTTCTTCAGCAA 59.661 37.500 14.67 0.00 33.10 3.91
2723 2957 5.009010 GGAGTTCTGCAGTTTGATTTCTTCA 59.991 40.000 14.67 0.00 0.00 3.02
2771 3005 4.855298 AAAATCCATCCTCTTACCCGAA 57.145 40.909 0.00 0.00 0.00 4.30
2793 3027 7.605691 GTCTGAATTCTTCCTGAATCTCTTCAA 59.394 37.037 7.05 0.00 43.99 2.69
2798 3032 6.652481 TGTTGTCTGAATTCTTCCTGAATCTC 59.348 38.462 7.05 0.00 43.99 2.75
2825 3059 0.979665 TCTCTTCCTTGACAGGCCTG 59.020 55.000 31.60 31.60 40.58 4.85
2826 3060 1.627834 CTTCTCTTCCTTGACAGGCCT 59.372 52.381 0.00 0.00 40.58 5.19
2849 3083 1.404047 GCACTCTTCTCCTGAGCACTC 60.404 57.143 0.00 0.00 35.12 3.51
2851 3085 0.319728 TGCACTCTTCTCCTGAGCAC 59.680 55.000 0.00 0.00 35.12 4.40
2860 3094 1.003597 CCAGCTGCTGCACTCTTCT 60.004 57.895 23.86 0.00 42.74 2.85
2872 3106 1.593296 GGCCTGCTTCTTTCCAGCTG 61.593 60.000 6.78 6.78 38.19 4.24
2875 3109 0.251077 AGTGGCCTGCTTCTTTCCAG 60.251 55.000 3.32 0.00 0.00 3.86
2894 3128 1.672030 CAGCAACCGTCTCATGCCA 60.672 57.895 0.00 0.00 40.93 4.92
2936 3170 1.904990 GCTTCTCCCTCGCCTTCCTT 61.905 60.000 0.00 0.00 0.00 3.36
3035 3269 6.539649 TGTCTGTCTACATGTTTACTTTGC 57.460 37.500 2.30 0.00 0.00 3.68
3188 3422 3.126001 TCATTCTCCTGTTGTGTCACC 57.874 47.619 0.00 0.00 0.00 4.02
3214 3454 6.255453 GCTAAAACTGACATGTTCTTTTGCAA 59.745 34.615 0.00 0.00 0.00 4.08
3278 3524 5.189736 TCTCACTACTATTGCCAATGGTTCT 59.810 40.000 11.84 0.00 34.25 3.01
3306 3552 0.097674 GCTGCTCCAGTTATGTTGCG 59.902 55.000 0.00 0.00 33.43 4.85
3310 3556 0.543749 GGAGGCTGCTCCAGTTATGT 59.456 55.000 0.00 0.00 42.86 2.29
3313 3559 0.615331 CAAGGAGGCTGCTCCAGTTA 59.385 55.000 9.62 0.00 45.66 2.24
3401 3647 0.741574 TATGCGTTGCCCGACGATTT 60.742 50.000 11.96 0.00 45.47 2.17
3423 3669 1.029681 AACTTCCGGTTTGGTGCTTC 58.970 50.000 0.00 0.00 39.52 3.86
3435 3681 4.095782 TGACTTCTTGTTTTCCAACTTCCG 59.904 41.667 0.00 0.00 33.58 4.30
3456 3702 1.762370 TCCTGCTTCTGACAACAGTGA 59.238 47.619 0.00 0.00 43.81 3.41
3476 3722 7.547370 GTGTACTCAAGCTTCTTTCTCATATGT 59.453 37.037 0.00 0.00 0.00 2.29
3494 3740 2.312390 TGTGCCACTACAGTGTACTCA 58.688 47.619 8.48 4.89 44.21 3.41
3499 3745 1.070758 CCTCTTGTGCCACTACAGTGT 59.929 52.381 0.00 0.00 44.21 3.55
3516 3762 4.679373 TTGCATCTACCTCATTCTCCTC 57.321 45.455 0.00 0.00 0.00 3.71
3581 3827 1.375396 CAAACCGACTCCGCCATGA 60.375 57.895 0.00 0.00 0.00 3.07
3589 3835 2.525422 GGTTCCGACAAACCGACTC 58.475 57.895 0.00 0.00 39.40 3.36
3615 3861 1.403514 GCTGCTGTCTCTCACTACCAC 60.404 57.143 0.00 0.00 0.00 4.16
3747 4002 4.993905 TCAGCAATTGCAATCTGATCAAG 58.006 39.130 30.89 7.59 45.16 3.02
3749 4004 4.266714 TCTCAGCAATTGCAATCTGATCA 58.733 39.130 30.89 14.54 45.16 2.92
3757 4012 7.829725 ACTTACATTTATCTCAGCAATTGCAA 58.170 30.769 30.89 17.78 45.16 4.08
3835 4090 6.526674 CACCAAATTCCACGCTTTATTAGAAC 59.473 38.462 0.00 0.00 0.00 3.01
3843 4098 4.657436 TTTACACCAAATTCCACGCTTT 57.343 36.364 0.00 0.00 0.00 3.51
3856 4111 5.104151 TCCTATCATCCTGCAATTTACACCA 60.104 40.000 0.00 0.00 0.00 4.17
3857 4112 5.376625 TCCTATCATCCTGCAATTTACACC 58.623 41.667 0.00 0.00 0.00 4.16
3865 4120 3.459227 TGGTTGATCCTATCATCCTGCAA 59.541 43.478 14.85 0.00 45.31 4.08
3876 4131 3.513912 CACTAGGTGTGTGGTTGATCCTA 59.486 47.826 0.00 0.00 41.53 2.94
3952 4207 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3966 4221 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
3971 4226 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
3973 4228 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3974 4229 5.351465 TGTTGTTGTTGTTGTTGTTGTTGTT 59.649 32.000 0.00 0.00 0.00 2.83
3975 4230 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
3976 4231 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3978 4233 4.870426 TGTTGTTGTTGTTGTTGTTGTTGT 59.130 33.333 0.00 0.00 0.00 3.32
3979 4234 5.395325 TGTTGTTGTTGTTGTTGTTGTTG 57.605 34.783 0.00 0.00 0.00 3.33
3980 4235 5.755375 TGATGTTGTTGTTGTTGTTGTTGTT 59.245 32.000 0.00 0.00 0.00 2.83
3981 4236 5.292765 TGATGTTGTTGTTGTTGTTGTTGT 58.707 33.333 0.00 0.00 0.00 3.32
3982 4237 5.835911 TGATGTTGTTGTTGTTGTTGTTG 57.164 34.783 0.00 0.00 0.00 3.33
3990 4523 8.196771 ACTATCATTTGTTGATGTTGTTGTTGT 58.803 29.630 0.00 0.00 44.90 3.32
3996 4529 9.814899 TTTTTCACTATCATTTGTTGATGTTGT 57.185 25.926 0.00 0.00 44.90 3.32
3999 4532 8.143193 TGCTTTTTCACTATCATTTGTTGATGT 58.857 29.630 0.00 0.00 44.90 3.06
4002 4535 6.642131 GCTGCTTTTTCACTATCATTTGTTGA 59.358 34.615 0.00 0.00 39.12 3.18
4021 4554 4.292186 TCAAATCCTCAGTTAGCTGCTT 57.708 40.909 7.79 0.00 42.29 3.91
4026 4559 4.837972 AGACCTTCAAATCCTCAGTTAGC 58.162 43.478 0.00 0.00 0.00 3.09
4045 4578 4.339814 AGGAATCGTACTCTGATCCAAGAC 59.660 45.833 0.00 0.00 0.00 3.01
4135 4668 6.866010 TGCACGCTTCATTAGAATGATAAT 57.134 33.333 5.80 0.00 44.27 1.28
4207 4740 5.789643 AATGTTTCAGGCATTTGTGTAGT 57.210 34.783 0.00 0.00 33.24 2.73
4277 4822 1.475213 CCTCCTCGGTAAATGCTTCCC 60.475 57.143 0.00 0.00 0.00 3.97
4307 4852 5.098211 GCTCTTTCACTATCATTTGTTGCC 58.902 41.667 0.00 0.00 0.00 4.52
4332 4877 1.814394 ACATGCGTACCGTCAGTTAGA 59.186 47.619 0.00 0.00 0.00 2.10
4364 4909 9.524496 TCTTCAGTTTAGTACTACAGGACAATA 57.476 33.333 0.91 0.00 34.56 1.90
4365 4910 8.418597 TCTTCAGTTTAGTACTACAGGACAAT 57.581 34.615 0.91 0.00 34.56 2.71
4366 4911 7.828508 TCTTCAGTTTAGTACTACAGGACAA 57.171 36.000 0.91 0.00 34.56 3.18
4479 5024 5.302568 TCTTGTGATCCTGCAAATTTTCAGT 59.697 36.000 15.29 0.00 0.00 3.41
4496 5041 5.505489 GCATGTAACAACATGTGTCTTGTGA 60.505 40.000 17.20 0.00 46.64 3.58
4541 5086 0.536260 GCAGTCTCATGAGCAGGAGT 59.464 55.000 18.36 0.88 39.93 3.85
4613 5158 1.413767 CGATGAAACTGACGGGAGCG 61.414 60.000 0.00 0.00 0.00 5.03
4663 5208 1.305201 GAGGTTGTTGCCTTTGTCGA 58.695 50.000 0.00 0.00 39.34 4.20
4664 5209 0.310854 GGAGGTTGTTGCCTTTGTCG 59.689 55.000 0.00 0.00 39.34 4.35
4665 5210 1.609072 GAGGAGGTTGTTGCCTTTGTC 59.391 52.381 0.00 0.00 39.34 3.18
4670 5215 1.831652 CGGAGAGGAGGTTGTTGCCT 61.832 60.000 0.00 0.00 42.53 4.75
4677 5222 2.596776 CCACATCGGAGAGGAGGTT 58.403 57.895 0.00 0.00 43.69 3.50
4707 5252 2.039084 TCCTCTTGCCTTTCCTTCTGAC 59.961 50.000 0.00 0.00 0.00 3.51
4724 5269 3.157252 TCCATGGCCTCGCTCCTC 61.157 66.667 6.96 0.00 0.00 3.71
4725 5270 3.160047 CTCCATGGCCTCGCTCCT 61.160 66.667 6.96 0.00 0.00 3.69
4838 5383 3.737850 CTGCTGAGTTCTCTTGGACTTT 58.262 45.455 1.53 0.00 0.00 2.66
4973 5518 3.036429 GCCCTTCTCCATCGGCAGT 62.036 63.158 0.00 0.00 41.25 4.40
4980 5525 1.079127 CAACGTCGCCCTTCTCCAT 60.079 57.895 0.00 0.00 0.00 3.41
4997 5542 2.834549 GTTCTTCTCCAGATCCCTGACA 59.165 50.000 0.00 0.00 43.02 3.58
5000 5545 4.653341 AGTATGTTCTTCTCCAGATCCCTG 59.347 45.833 0.00 0.00 40.09 4.45
5027 5572 2.978000 ACGTCGGTGATGATGCCA 59.022 55.556 0.00 0.00 0.00 4.92
5072 5617 1.302511 GGGACAACAGCCATGTCGT 60.303 57.895 7.72 0.00 46.41 4.34
5242 5825 5.226396 CACAACCTTGTCTTGTGTCAAAAA 58.774 37.500 3.58 0.00 42.37 1.94
5248 5831 2.507407 ACCACAACCTTGTCTTGTGT 57.493 45.000 9.72 0.00 44.75 3.72
5290 5873 2.663119 GCTCGAATTGAAACAATGGCAC 59.337 45.455 0.00 0.00 0.00 5.01
5453 8028 1.660355 GGTCGACAGCTCTCACACA 59.340 57.895 18.91 0.00 0.00 3.72
5470 8045 5.521735 CCTATGACAACTTCATTCTTCTCGG 59.478 44.000 0.00 0.00 42.87 4.63
5568 8940 7.536964 GCCATGTTTTTAATAAAAATGTGTGCC 59.463 33.333 13.21 1.18 41.85 5.01
5584 8958 8.719648 CATGTGTGTTTATTATGCCATGTTTTT 58.280 29.630 0.00 0.00 0.00 1.94
5624 9776 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
5625 9777 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
5643 9795 9.088512 CACTATTTGAGTAATCTAAACGCTCTT 57.911 33.333 0.00 0.00 35.64 2.85
5645 9797 8.630278 TCACTATTTGAGTAATCTAAACGCTC 57.370 34.615 0.00 0.00 35.64 5.03
5646 9798 9.250624 GATCACTATTTGAGTAATCTAAACGCT 57.749 33.333 0.00 0.00 37.77 5.07
5647 9799 9.250624 AGATCACTATTTGAGTAATCTAAACGC 57.749 33.333 0.00 0.00 40.86 4.84
5674 9826 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
5675 9827 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
5677 9829 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
5679 9831 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
5680 9832 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
5681 9833 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
5682 9834 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
5683 9835 8.995027 TTGTACTCCCTCCGTAAACTAATATA 57.005 34.615 0.00 0.00 0.00 0.86
5684 9836 7.902920 TTGTACTCCCTCCGTAAACTAATAT 57.097 36.000 0.00 0.00 0.00 1.28
5685 9837 7.342799 ACATTGTACTCCCTCCGTAAACTAATA 59.657 37.037 0.00 0.00 0.00 0.98
5687 9839 5.481473 ACATTGTACTCCCTCCGTAAACTAA 59.519 40.000 0.00 0.00 0.00 2.24
5689 9841 3.836562 ACATTGTACTCCCTCCGTAAACT 59.163 43.478 0.00 0.00 0.00 2.66
5693 9845 4.603131 AGTTACATTGTACTCCCTCCGTA 58.397 43.478 0.00 0.00 0.00 4.02
5694 9846 3.438183 AGTTACATTGTACTCCCTCCGT 58.562 45.455 0.00 0.00 0.00 4.69
5695 9847 4.499357 GCTAGTTACATTGTACTCCCTCCG 60.499 50.000 0.00 0.00 0.00 4.63
5696 9848 4.404715 TGCTAGTTACATTGTACTCCCTCC 59.595 45.833 0.00 0.00 0.00 4.30
5697 9849 5.593010 CTGCTAGTTACATTGTACTCCCTC 58.407 45.833 0.00 0.00 0.00 4.30
5700 9852 5.012328 AGCTGCTAGTTACATTGTACTCC 57.988 43.478 0.00 0.00 0.00 3.85
5701 9853 6.210078 CCTAGCTGCTAGTTACATTGTACTC 58.790 44.000 29.21 0.00 32.62 2.59
5702 9854 5.452077 GCCTAGCTGCTAGTTACATTGTACT 60.452 44.000 29.21 0.83 32.62 2.73
5733 9885 6.401394 TGTACTCAAAAGTCATCTCCATCTG 58.599 40.000 0.00 0.00 36.92 2.90
5749 10245 5.730289 GCAATTCGCTATGCATTGTACTCAA 60.730 40.000 3.54 0.00 42.12 3.02
5805 10301 1.270826 TCTTCTTCGCTCTCACTGTGG 59.729 52.381 8.11 0.00 0.00 4.17
5806 10302 2.713895 TCTTCTTCGCTCTCACTGTG 57.286 50.000 0.17 0.17 0.00 3.66
5807 10303 2.822561 TCATCTTCTTCGCTCTCACTGT 59.177 45.455 0.00 0.00 0.00 3.55
5810 10306 2.094494 TGGTCATCTTCTTCGCTCTCAC 60.094 50.000 0.00 0.00 0.00 3.51
5814 10310 3.265791 ACATTGGTCATCTTCTTCGCTC 58.734 45.455 0.00 0.00 0.00 5.03
5815 10311 3.265791 GACATTGGTCATCTTCTTCGCT 58.734 45.455 0.00 0.00 43.73 4.93
5835 10331 5.063204 CCAGTATTCAGTGAACCAACTTGA 58.937 41.667 7.96 0.00 0.00 3.02
5899 10395 1.577328 ATTTGCAAGGACGGACTGCG 61.577 55.000 0.00 0.00 0.00 5.18
5933 10429 3.633525 GCATAGCTTCATTTGGACCATCA 59.366 43.478 0.00 0.00 0.00 3.07
5967 10463 0.242825 TAGAGAAACTGTGCCGACCG 59.757 55.000 0.00 0.00 0.00 4.79
5978 10474 5.105513 CCTTTCTCCAGAGTCCTAGAGAAAC 60.106 48.000 18.73 0.00 45.51 2.78
6041 10537 3.635331 CCATGCACACACTTCTTTGAAG 58.365 45.455 5.85 5.85 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.