Multiple sequence alignment - TraesCS5A01G408800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G408800 chr5A 100.000 6357 0 0 1 6357 598853846 598860202 0.000000e+00 11740.0
1 TraesCS5A01G408800 chr5B 91.925 3418 190 35 1252 4643 588504470 588507827 0.000000e+00 4704.0
2 TraesCS5A01G408800 chr5B 91.243 1199 75 20 1 1184 588502893 588504076 0.000000e+00 1605.0
3 TraesCS5A01G408800 chr5B 86.401 853 78 20 4669 5501 588508063 588508897 0.000000e+00 898.0
4 TraesCS5A01G408800 chr5B 82.632 380 32 16 6001 6357 588509376 588509744 8.010000e-79 305.0
5 TraesCS5A01G408800 chr5B 81.407 398 37 11 5535 5920 588508894 588509266 2.240000e-74 291.0
6 TraesCS5A01G408800 chr5D 90.335 2152 144 26 2331 4451 480356648 480358766 0.000000e+00 2763.0
7 TraesCS5A01G408800 chr5D 93.401 1076 51 9 1156 2219 480355533 480356600 0.000000e+00 1576.0
8 TraesCS5A01G408800 chr5D 83.347 1195 97 50 1 1154 480353972 480355105 0.000000e+00 1011.0
9 TraesCS5A01G408800 chr5D 87.758 727 72 10 4727 5445 480358990 480359707 0.000000e+00 833.0
10 TraesCS5A01G408800 chr5D 79.457 589 63 22 5810 6357 480360367 480360938 1.300000e-96 364.0
11 TraesCS5A01G408800 chr5D 94.286 35 2 0 1756 1790 260225107 260225073 3.000000e-03 54.7
12 TraesCS5A01G408800 chr2B 95.000 40 2 0 1747 1786 417879439 417879400 5.320000e-06 63.9
13 TraesCS5A01G408800 chr6A 94.286 35 2 0 1756 1790 62347887 62347921 3.000000e-03 54.7
14 TraesCS5A01G408800 chr4D 96.875 32 1 0 1756 1787 495022762 495022793 3.000000e-03 54.7
15 TraesCS5A01G408800 chr3D 94.286 35 2 0 1756 1790 373044661 373044627 3.000000e-03 54.7
16 TraesCS5A01G408800 chr2D 96.875 32 1 0 1756 1787 185321276 185321245 3.000000e-03 54.7
17 TraesCS5A01G408800 chr2D 96.875 32 1 0 1756 1787 500899226 500899257 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G408800 chr5A 598853846 598860202 6356 False 11740.0 11740 100.0000 1 6357 1 chr5A.!!$F1 6356
1 TraesCS5A01G408800 chr5B 588502893 588509744 6851 False 1560.6 4704 86.7216 1 6357 5 chr5B.!!$F1 6356
2 TraesCS5A01G408800 chr5D 480353972 480360938 6966 False 1309.4 2763 86.8596 1 6357 5 chr5D.!!$F1 6356

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
481 482 0.040514 CGAATCACAAGGCGCACAAA 60.041 50.0 10.83 0.0 0.00 2.83 F
1697 2496 0.179097 GAGGAGGTTGAGGACGATGC 60.179 60.0 0.00 0.0 0.00 3.91 F
1890 2692 0.032813 CCAATGGAGGGCAGAATGGT 60.033 55.0 0.00 0.0 35.86 3.55 F
3260 4103 0.971959 TGCCAGGGTCCATCAAATGC 60.972 55.0 0.00 0.0 0.00 3.56 F
4191 5048 0.107945 GGTTGCTGATCTTCTCCGCT 60.108 55.0 0.00 0.0 35.33 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1728 2527 0.983378 CGGACTCCTCCCCTTCCAAT 60.983 60.0 0.00 0.0 31.93 3.16 R
2663 3501 0.764890 AGTGCTTGTAACAGCCTCCA 59.235 50.0 0.00 0.0 39.25 3.86 R
3380 4224 1.056700 AGTCCTGGCAGAACCACTGT 61.057 55.0 17.94 0.0 46.36 3.55 R
4737 5818 0.243365 TGCCACGCCATCACAATTTC 59.757 50.0 0.00 0.0 0.00 2.17 R
5377 6474 0.039618 GAGTGGGCTGAATGGGGAAA 59.960 55.0 0.00 0.0 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.733671 CGTGCATGCTCCAGACACG 61.734 63.158 20.33 14.36 46.57 4.49
99 100 4.520492 CCATTTAGCACATATCCAAGGTCC 59.480 45.833 0.00 0.00 0.00 4.46
135 136 0.796312 CCGACCATTTGTTCTCACGG 59.204 55.000 0.00 0.00 0.00 4.94
190 191 2.032549 CCTCACTTGAACTTTGACGCTG 60.033 50.000 0.00 0.00 0.00 5.18
191 192 1.330521 TCACTTGAACTTTGACGCTGC 59.669 47.619 0.00 0.00 0.00 5.25
250 251 0.540133 TGACATGGCCTGCACAATGT 60.540 50.000 3.32 3.67 0.00 2.71
262 263 3.011818 TGCACAATGTAGATGCAAGGAG 58.988 45.455 0.00 0.00 45.96 3.69
267 268 0.107508 TGTAGATGCAAGGAGCCTGC 60.108 55.000 0.00 0.00 44.83 4.85
480 481 0.882484 TCGAATCACAAGGCGCACAA 60.882 50.000 10.83 0.00 0.00 3.33
481 482 0.040514 CGAATCACAAGGCGCACAAA 60.041 50.000 10.83 0.00 0.00 2.83
576 586 0.888736 TGTTGGCTTCCACGACCATG 60.889 55.000 0.00 0.00 30.78 3.66
584 594 2.179767 CACGACCATGTACCGCGA 59.820 61.111 8.23 0.00 0.00 5.87
585 595 1.872234 CACGACCATGTACCGCGAG 60.872 63.158 8.23 0.00 0.00 5.03
587 597 2.954868 GACCATGTACCGCGAGCG 60.955 66.667 8.23 10.86 39.44 5.03
591 601 4.429212 ATGTACCGCGAGCGCACA 62.429 61.111 19.71 19.71 42.06 4.57
626 636 3.004524 ACAGTGTTACTCTCGTCAGTTCC 59.995 47.826 0.00 0.00 0.00 3.62
661 685 4.543590 TCCAGCTTTAGGTTCAGAGAAG 57.456 45.455 0.00 0.00 0.00 2.85
683 707 4.161565 AGGTGCTGGATAGATCGTGTAAAA 59.838 41.667 0.00 0.00 0.00 1.52
684 708 4.508124 GGTGCTGGATAGATCGTGTAAAAG 59.492 45.833 0.00 0.00 0.00 2.27
687 711 5.070446 TGCTGGATAGATCGTGTAAAAGGAT 59.930 40.000 0.00 0.00 36.10 3.24
688 712 5.406780 GCTGGATAGATCGTGTAAAAGGATG 59.593 44.000 0.00 0.00 33.54 3.51
689 713 6.479972 TGGATAGATCGTGTAAAAGGATGT 57.520 37.500 0.00 0.00 33.54 3.06
694 718 3.120321 TCGTGTAAAAGGATGTGCTGT 57.880 42.857 0.00 0.00 0.00 4.40
767 804 8.081633 TGTAAAGCTTCTGAACATTGTAAATGG 58.918 33.333 0.00 0.00 0.00 3.16
786 823 7.437713 AAATGGATCTGTACAAGGATGTAGA 57.562 36.000 2.53 0.00 42.54 2.59
790 827 6.322456 TGGATCTGTACAAGGATGTAGAAGAG 59.678 42.308 2.53 0.00 42.54 2.85
791 828 6.322712 GGATCTGTACAAGGATGTAGAAGAGT 59.677 42.308 2.53 0.00 42.54 3.24
792 829 7.147811 GGATCTGTACAAGGATGTAGAAGAGTT 60.148 40.741 2.53 0.00 42.54 3.01
799 836 6.876257 ACAAGGATGTAGAAGAGTTGTTGATC 59.124 38.462 0.00 0.00 38.24 2.92
801 838 7.009179 AGGATGTAGAAGAGTTGTTGATCAA 57.991 36.000 3.38 3.38 0.00 2.57
803 840 8.105829 AGGATGTAGAAGAGTTGTTGATCAATT 58.894 33.333 12.12 0.00 38.38 2.32
807 844 8.902806 TGTAGAAGAGTTGTTGATCAATTGTTT 58.097 29.630 12.12 2.39 38.38 2.83
825 864 3.509575 TGTTTGGTGCTTCTGAAAGTTGT 59.490 39.130 0.00 0.00 34.79 3.32
867 906 5.683859 CAAAAGATCTCAAGACTTTGGACG 58.316 41.667 0.00 0.00 34.70 4.79
932 979 4.496895 CAGTTTCAGAAAGAACAGCAAACG 59.503 41.667 0.00 0.00 35.56 3.60
942 989 4.531426 AGCAAACGCCAACCCCCA 62.531 61.111 0.00 0.00 0.00 4.96
944 991 3.611674 CAAACGCCAACCCCCACC 61.612 66.667 0.00 0.00 0.00 4.61
979 1026 1.677217 GCACAGCAAAACCCACCAAAA 60.677 47.619 0.00 0.00 0.00 2.44
1000 1047 2.356667 GAAGCCAACCTCCCCCTG 59.643 66.667 0.00 0.00 0.00 4.45
1006 1053 4.959460 AACCTCCCCCTGCCCCAA 62.959 66.667 0.00 0.00 0.00 4.12
1007 1054 4.959460 ACCTCCCCCTGCCCCAAA 62.959 66.667 0.00 0.00 0.00 3.28
1013 1060 4.702274 CCCTGCCCCAAACCCCAG 62.702 72.222 0.00 0.00 0.00 4.45
1015 1062 4.305956 CTGCCCCAAACCCCAGCT 62.306 66.667 0.00 0.00 0.00 4.24
1019 1066 4.659172 CCCAAACCCCAGCTCGCA 62.659 66.667 0.00 0.00 0.00 5.10
1138 1185 4.399618 TCTTCTTCCTCTACAAGTCCATCG 59.600 45.833 0.00 0.00 0.00 3.84
1192 1665 1.319799 CCTTCCCCATCCTCCTCCT 59.680 63.158 0.00 0.00 0.00 3.69
1193 1666 0.766288 CCTTCCCCATCCTCCTCCTC 60.766 65.000 0.00 0.00 0.00 3.71
1194 1667 0.766288 CTTCCCCATCCTCCTCCTCC 60.766 65.000 0.00 0.00 0.00 4.30
1195 1668 2.122189 CCCCATCCTCCTCCTCCC 60.122 72.222 0.00 0.00 0.00 4.30
1196 1669 2.122189 CCCATCCTCCTCCTCCCC 60.122 72.222 0.00 0.00 0.00 4.81
1197 1670 2.122189 CCATCCTCCTCCTCCCCC 60.122 72.222 0.00 0.00 0.00 5.40
1198 1671 2.525381 CATCCTCCTCCTCCCCCG 60.525 72.222 0.00 0.00 0.00 5.73
1233 1706 3.584052 CCGACCCTCCTCTACGCG 61.584 72.222 3.53 3.53 0.00 6.01
1260 2059 4.748144 GGCACCTCCAAGGCCCTG 62.748 72.222 0.00 0.00 39.63 4.45
1344 2143 3.048941 CTTCGACCCGGACGACCTC 62.049 68.421 19.74 0.00 39.46 3.85
1380 2179 3.775654 CTGCTCGTCCTCCCCACC 61.776 72.222 0.00 0.00 0.00 4.61
1692 2491 0.547954 AAGGGGAGGAGGTTGAGGAC 60.548 60.000 0.00 0.00 0.00 3.85
1695 2494 0.688087 GGGAGGAGGTTGAGGACGAT 60.688 60.000 0.00 0.00 0.00 3.73
1697 2496 0.179097 GAGGAGGTTGAGGACGATGC 60.179 60.000 0.00 0.00 0.00 3.91
1728 2527 4.385643 GGAGAGACCAATGGATTTGATGGA 60.386 45.833 6.16 0.00 37.53 3.41
1812 2614 0.035056 GTGGGGAGGTTGACATGGAG 60.035 60.000 0.00 0.00 0.00 3.86
1890 2692 0.032813 CCAATGGAGGGCAGAATGGT 60.033 55.000 0.00 0.00 35.86 3.55
1953 2755 3.309954 AGAAACAAGTGAGCGTCAACTTC 59.690 43.478 0.00 0.00 0.00 3.01
2013 2821 5.888412 TGCATATGTATATAAGCGCATCG 57.112 39.130 11.47 0.00 36.52 3.84
2041 2849 8.964772 CCTGAAATTTTGAAGAGTCCTATGATT 58.035 33.333 0.00 0.00 0.00 2.57
2072 2880 8.791327 TGAAAATAGAGTATTGCACATTCTGA 57.209 30.769 0.00 0.00 0.00 3.27
2073 2881 8.668353 TGAAAATAGAGTATTGCACATTCTGAC 58.332 33.333 0.00 0.00 0.00 3.51
2077 2885 6.674694 AGAGTATTGCACATTCTGACATTC 57.325 37.500 0.00 0.00 0.00 2.67
2109 2925 5.011090 TGCTTACCTGACATACATCACTC 57.989 43.478 0.00 0.00 0.00 3.51
2119 2935 5.007385 ACATACATCACTCGTAAGGAACC 57.993 43.478 0.00 0.00 38.47 3.62
2172 2988 6.122277 TGAGGCAGTTTTTAAGCATAGCTAT 58.878 36.000 0.00 0.00 38.25 2.97
2214 3034 9.682465 GTTCCCCTCTAAATTTATTGAACTAGT 57.318 33.333 0.00 0.00 0.00 2.57
2254 3074 4.627467 GGAATATATGCCGTGCTAGTGAAG 59.373 45.833 0.00 0.00 0.00 3.02
2358 3178 5.302568 ACCAAGCATCTTCATGAAACTTTCA 59.697 36.000 9.88 6.67 45.01 2.69
2396 3216 5.221244 ACAACTTTTACTGATCCCAAACTGC 60.221 40.000 0.00 0.00 0.00 4.40
2420 3240 2.853705 TGGTTAACACTAGGGTTGTGC 58.146 47.619 20.87 9.70 38.86 4.57
2468 3291 7.256835 CCTTGCCTATAAGGTAGAATTCTCCAT 60.257 40.741 12.24 8.78 41.85 3.41
2526 3364 8.094798 TGTCTGTAGTTTATGTTTTTAGCCTG 57.905 34.615 0.00 0.00 0.00 4.85
2574 3412 8.097038 GTGATCTAGTGCCCTATTAATCAATCA 58.903 37.037 0.00 0.00 0.00 2.57
2612 3450 3.323691 AGGGCTACAAAATTGTTGGTTCC 59.676 43.478 3.85 0.17 42.35 3.62
2618 3456 4.893608 ACAAAATTGTTGGTTCCCATAGC 58.106 39.130 0.00 0.00 38.47 2.97
2663 3501 1.173444 AGTCACAGCTTCGAGGTCGT 61.173 55.000 0.00 0.00 40.80 4.34
2669 3507 2.182030 CTTCGAGGTCGTGGAGGC 59.818 66.667 0.00 0.00 40.80 4.70
2740 3582 8.969121 TTTTTGCTTCTGTGACATTGTATATG 57.031 30.769 0.00 0.00 0.00 1.78
2812 3654 7.272244 TGTCACAGATCGGTTTCATAACATAT 58.728 34.615 0.00 0.00 35.92 1.78
2821 3663 8.190326 TCGGTTTCATAACATATATCCACTCT 57.810 34.615 0.00 0.00 35.92 3.24
2825 3667 8.715998 GTTTCATAACATATATCCACTCTGCAG 58.284 37.037 7.63 7.63 34.31 4.41
2853 3695 5.806654 AATATTTGTGTGGTTTGCTTCCT 57.193 34.783 0.00 0.00 0.00 3.36
2862 3704 2.687935 TGGTTTGCTTCCTTGAGTGTTC 59.312 45.455 0.00 0.00 0.00 3.18
2863 3705 2.034685 GGTTTGCTTCCTTGAGTGTTCC 59.965 50.000 0.00 0.00 0.00 3.62
2904 3746 5.185442 TGCTCAATTTTGTAGATGCATGGAA 59.815 36.000 2.46 0.00 0.00 3.53
3024 3866 5.880332 TCCTCTTGACATTGTTAATACTGCC 59.120 40.000 0.00 0.00 0.00 4.85
3092 3934 6.154445 CAGGTATGCATTATTCTGCCAAATC 58.846 40.000 3.54 0.00 41.58 2.17
3093 3935 5.244626 AGGTATGCATTATTCTGCCAAATCC 59.755 40.000 3.54 0.00 41.58 3.01
3094 3936 5.244626 GGTATGCATTATTCTGCCAAATCCT 59.755 40.000 3.54 0.00 41.58 3.24
3095 3937 6.434028 GGTATGCATTATTCTGCCAAATCCTA 59.566 38.462 3.54 0.00 41.58 2.94
3096 3938 7.123247 GGTATGCATTATTCTGCCAAATCCTAT 59.877 37.037 3.54 0.00 41.58 2.57
3097 3939 6.982160 TGCATTATTCTGCCAAATCCTATT 57.018 33.333 0.00 0.00 41.58 1.73
3163 4005 3.311106 CATTGCAAAGCACCTGTAACTG 58.689 45.455 1.71 0.00 38.71 3.16
3172 4014 2.812613 GCACCTGTAACTGGCCTAAACA 60.813 50.000 3.32 2.33 0.00 2.83
3173 4015 3.074412 CACCTGTAACTGGCCTAAACAG 58.926 50.000 16.43 16.43 41.64 3.16
3177 4019 5.249852 ACCTGTAACTGGCCTAAACAGATAA 59.750 40.000 21.88 0.00 39.93 1.75
3210 4053 1.474077 GTTTCAACCCTATGCCAGCAG 59.526 52.381 0.00 0.00 0.00 4.24
3215 4058 3.053693 TCAACCCTATGCCAGCAGTAATT 60.054 43.478 0.00 0.00 0.00 1.40
3219 4062 2.620115 CCTATGCCAGCAGTAATTGTGG 59.380 50.000 0.00 0.00 33.63 4.17
3221 4064 2.266070 GCCAGCAGTAATTGTGGCA 58.734 52.632 7.32 0.00 45.44 4.92
3225 4068 2.095059 CCAGCAGTAATTGTGGCAGAAC 60.095 50.000 0.00 0.00 0.00 3.01
3248 4091 4.728772 TGTTCCATTAAGATATGCCAGGG 58.271 43.478 0.00 0.00 0.00 4.45
3257 4100 2.785269 AGATATGCCAGGGTCCATCAAA 59.215 45.455 0.00 0.00 0.00 2.69
3260 4103 0.971959 TGCCAGGGTCCATCAAATGC 60.972 55.000 0.00 0.00 0.00 3.56
3264 4107 2.026641 CAGGGTCCATCAAATGCGAAT 58.973 47.619 0.00 0.00 0.00 3.34
3265 4108 2.428171 CAGGGTCCATCAAATGCGAATT 59.572 45.455 0.00 0.00 0.00 2.17
3266 4109 3.099141 AGGGTCCATCAAATGCGAATTT 58.901 40.909 0.00 0.00 0.00 1.82
3317 4160 2.289320 CCTGCAGTGCTGAGAACTTAGT 60.289 50.000 22.25 0.00 0.00 2.24
3323 4166 5.163561 GCAGTGCTGAGAACTTAGTCTCTAT 60.164 44.000 8.18 0.00 43.82 1.98
3357 4201 7.588497 AAACCTCATAAATATTCTGGGAAGC 57.412 36.000 0.00 0.00 0.00 3.86
3358 4202 6.521527 ACCTCATAAATATTCTGGGAAGCT 57.478 37.500 0.00 0.00 0.00 3.74
3359 4203 7.633018 ACCTCATAAATATTCTGGGAAGCTA 57.367 36.000 0.00 0.00 0.00 3.32
3360 4204 8.045720 ACCTCATAAATATTCTGGGAAGCTAA 57.954 34.615 0.00 0.00 0.00 3.09
3361 4205 8.673251 ACCTCATAAATATTCTGGGAAGCTAAT 58.327 33.333 0.00 0.00 0.00 1.73
3403 4255 2.787473 TGGTTCTGCCAGGACTATTG 57.213 50.000 2.54 0.00 43.61 1.90
3443 4295 7.977789 TTTGTATCATCAAGAAGTAACTGCA 57.022 32.000 0.00 0.00 0.00 4.41
3477 4329 3.562973 TGCTGTTTCTTGCTCTCTTTCTG 59.437 43.478 0.00 0.00 0.00 3.02
3641 4494 6.095377 GGTTACAAATGCTCAATTTCCTGAG 58.905 40.000 0.00 0.00 44.82 3.35
3647 4500 6.696441 AATGCTCAATTTCCTGAGAAGATC 57.304 37.500 4.81 0.00 44.82 2.75
3662 4515 2.797177 AGATCAAGGCTCTGAAACCC 57.203 50.000 0.00 0.00 0.00 4.11
3686 4539 7.257016 CCCATCACCCAGGTAATATTCTCAATA 60.257 40.741 0.00 0.00 0.00 1.90
3750 4603 8.887717 GCAGACAACACATTCTAGAGATAATTT 58.112 33.333 0.00 0.00 0.00 1.82
3852 4709 1.874345 TTCGGACTTCTGGGAGCGTC 61.874 60.000 0.00 0.00 0.00 5.19
3935 4792 6.759497 ACTAACTCTTCTTTTTGTGTGCTT 57.241 33.333 0.00 0.00 0.00 3.91
3938 4795 8.088365 ACTAACTCTTCTTTTTGTGTGCTTTTT 58.912 29.630 0.00 0.00 0.00 1.94
3943 4800 8.460831 TCTTCTTTTTGTGTGCTTTTTACTTC 57.539 30.769 0.00 0.00 0.00 3.01
3945 4802 5.287513 TCTTTTTGTGTGCTTTTTACTTCGC 59.712 36.000 0.00 0.00 0.00 4.70
3949 4806 5.277601 TGTGTGCTTTTTACTTCGCTATC 57.722 39.130 0.00 0.00 0.00 2.08
3950 4807 4.752604 TGTGTGCTTTTTACTTCGCTATCA 59.247 37.500 0.00 0.00 0.00 2.15
3951 4808 5.411361 TGTGTGCTTTTTACTTCGCTATCAT 59.589 36.000 0.00 0.00 0.00 2.45
3952 4809 6.592220 TGTGTGCTTTTTACTTCGCTATCATA 59.408 34.615 0.00 0.00 0.00 2.15
3953 4810 6.900299 GTGTGCTTTTTACTTCGCTATCATAC 59.100 38.462 0.00 0.00 0.00 2.39
4040 4897 2.579860 AGGCTGGAATGTGGAAGAGATT 59.420 45.455 0.00 0.00 0.00 2.40
4122 4979 2.561419 ACATACTGTGGCTCGTAAGTGT 59.439 45.455 0.00 0.00 39.48 3.55
4131 4988 7.389607 ACTGTGGCTCGTAAGTGTATTTTAAAT 59.610 33.333 0.00 0.00 39.48 1.40
4182 5039 0.813821 GGCTTCTTGGGTTGCTGATC 59.186 55.000 0.00 0.00 0.00 2.92
4183 5040 1.615384 GGCTTCTTGGGTTGCTGATCT 60.615 52.381 0.00 0.00 0.00 2.75
4184 5041 2.165998 GCTTCTTGGGTTGCTGATCTT 58.834 47.619 0.00 0.00 0.00 2.40
4185 5042 2.163211 GCTTCTTGGGTTGCTGATCTTC 59.837 50.000 0.00 0.00 0.00 2.87
4186 5043 3.683802 CTTCTTGGGTTGCTGATCTTCT 58.316 45.455 0.00 0.00 0.00 2.85
4187 5044 3.340814 TCTTGGGTTGCTGATCTTCTC 57.659 47.619 0.00 0.00 0.00 2.87
4188 5045 2.026822 TCTTGGGTTGCTGATCTTCTCC 60.027 50.000 0.00 0.00 0.00 3.71
4189 5046 0.250234 TGGGTTGCTGATCTTCTCCG 59.750 55.000 0.00 0.00 0.00 4.63
4190 5047 1.092345 GGGTTGCTGATCTTCTCCGC 61.092 60.000 0.00 0.00 34.90 5.54
4191 5048 0.107945 GGTTGCTGATCTTCTCCGCT 60.108 55.000 0.00 0.00 35.33 5.52
4192 5049 1.005340 GTTGCTGATCTTCTCCGCTG 58.995 55.000 0.00 0.00 35.33 5.18
4193 5050 0.897621 TTGCTGATCTTCTCCGCTGA 59.102 50.000 0.00 0.00 35.33 4.26
4194 5051 1.117994 TGCTGATCTTCTCCGCTGAT 58.882 50.000 0.00 0.00 35.33 2.90
4210 5067 3.364964 CGCTGATATTTTCCGGTAATGCC 60.365 47.826 0.00 0.82 0.00 4.40
4252 5109 8.992457 TCAAAGTTGACAATGGAAAATGTCCCA 61.992 37.037 3.71 0.00 44.16 4.37
4264 5121 3.127533 GTCCCATGGCACGCTGAC 61.128 66.667 6.09 3.31 0.00 3.51
4286 5143 4.691216 ACGTTAAAGAATTCTCTGAGGTGC 59.309 41.667 8.78 0.00 30.03 5.01
4324 5181 5.222109 TGGTGGCATATATGAATTAGCCTGT 60.222 40.000 17.10 0.00 42.46 4.00
4437 5294 3.819368 TCAATGAACTGGTGAGCTTTCA 58.181 40.909 0.00 0.00 0.00 2.69
4439 5296 4.828939 TCAATGAACTGGTGAGCTTTCATT 59.171 37.500 13.54 13.54 0.00 2.57
4440 5297 4.778534 ATGAACTGGTGAGCTTTCATTG 57.221 40.909 3.70 0.00 0.00 2.82
4445 5302 4.070716 ACTGGTGAGCTTTCATTGAAGAG 58.929 43.478 0.00 2.49 0.00 2.85
4451 5308 7.025963 GGTGAGCTTTCATTGAAGAGTAATTG 58.974 38.462 0.00 0.00 0.00 2.32
4454 5311 8.456471 TGAGCTTTCATTGAAGAGTAATTGATG 58.544 33.333 0.00 0.00 0.00 3.07
4455 5312 8.571461 AGCTTTCATTGAAGAGTAATTGATGA 57.429 30.769 0.00 0.00 0.00 2.92
4476 5337 6.078202 TGATTTGAGCATTTGTTTCGGTAA 57.922 33.333 0.00 0.00 0.00 2.85
4478 5339 7.151308 TGATTTGAGCATTTGTTTCGGTAAAT 58.849 30.769 0.00 0.00 0.00 1.40
4484 5345 7.593273 TGAGCATTTGTTTCGGTAAATAAGTTG 59.407 33.333 0.00 0.00 28.95 3.16
4518 5379 3.055963 GCATCATCTATCAGTAGGCTGCT 60.056 47.826 0.00 0.00 42.29 4.24
4524 5385 7.157347 TCATCTATCAGTAGGCTGCTAAAATG 58.843 38.462 4.33 5.69 42.29 2.32
4530 5391 5.294306 TCAGTAGGCTGCTAAAATGAAATCG 59.706 40.000 4.33 0.00 42.29 3.34
4558 5419 6.280643 TGTACATATGAGCCTATGTTCACAC 58.719 40.000 10.38 3.67 41.42 3.82
4559 5420 5.620738 ACATATGAGCCTATGTTCACACT 57.379 39.130 10.38 0.00 38.83 3.55
4612 5477 2.079158 GCAAACTGCAGCACTAGATCA 58.921 47.619 15.27 0.00 44.26 2.92
4643 5508 8.522003 AGAATATGTGTACATGCAAAATTGTGA 58.478 29.630 7.73 0.00 37.15 3.58
4645 5510 8.692110 ATATGTGTACATGCAAAATTGTGAAG 57.308 30.769 7.73 0.00 37.15 3.02
4651 5732 7.860373 TGTACATGCAAAATTGTGAAGAACTAC 59.140 33.333 0.00 0.00 0.00 2.73
4652 5733 6.804677 ACATGCAAAATTGTGAAGAACTACA 58.195 32.000 0.00 0.00 0.00 2.74
4653 5734 7.436118 ACATGCAAAATTGTGAAGAACTACAT 58.564 30.769 0.00 0.00 0.00 2.29
4655 5736 8.767085 CATGCAAAATTGTGAAGAACTACATTT 58.233 29.630 0.00 0.00 0.00 2.32
4695 5776 4.082571 GCATTGTGCATTGAGTACTTTCCT 60.083 41.667 0.00 0.00 44.26 3.36
4696 5777 5.123820 GCATTGTGCATTGAGTACTTTCCTA 59.876 40.000 0.00 0.00 44.26 2.94
4697 5778 6.183360 GCATTGTGCATTGAGTACTTTCCTAT 60.183 38.462 0.00 0.00 44.26 2.57
4700 5781 7.843490 TGTGCATTGAGTACTTTCCTATTAC 57.157 36.000 0.00 0.00 33.54 1.89
4703 5784 8.893727 GTGCATTGAGTACTTTCCTATTACATT 58.106 33.333 0.00 0.00 0.00 2.71
4705 5786 9.722056 GCATTGAGTACTTTCCTATTACATTTG 57.278 33.333 0.00 0.00 0.00 2.32
4709 5790 7.277098 TGAGTACTTTCCTATTACATTTGCGTC 59.723 37.037 0.00 0.00 0.00 5.19
4710 5791 5.813080 ACTTTCCTATTACATTTGCGTCC 57.187 39.130 0.00 0.00 0.00 4.79
4711 5792 5.250200 ACTTTCCTATTACATTTGCGTCCA 58.750 37.500 0.00 0.00 0.00 4.02
4712 5793 5.885912 ACTTTCCTATTACATTTGCGTCCAT 59.114 36.000 0.00 0.00 0.00 3.41
4713 5794 6.377146 ACTTTCCTATTACATTTGCGTCCATT 59.623 34.615 0.00 0.00 0.00 3.16
4714 5795 5.749596 TCCTATTACATTTGCGTCCATTG 57.250 39.130 0.00 0.00 0.00 2.82
4715 5796 5.189928 TCCTATTACATTTGCGTCCATTGT 58.810 37.500 0.00 0.00 0.00 2.71
4716 5797 5.065859 TCCTATTACATTTGCGTCCATTGTG 59.934 40.000 0.00 0.00 0.00 3.33
4717 5798 4.782019 ATTACATTTGCGTCCATTGTGT 57.218 36.364 0.00 0.00 0.00 3.72
4718 5799 2.420628 ACATTTGCGTCCATTGTGTG 57.579 45.000 0.00 0.00 0.00 3.82
4719 5800 1.952990 ACATTTGCGTCCATTGTGTGA 59.047 42.857 0.00 0.00 0.00 3.58
4737 5818 2.686915 GTGAAAATCAGATGGCAGGGAG 59.313 50.000 0.00 0.00 0.00 4.30
4749 5830 1.753073 GGCAGGGAGAAATTGTGATGG 59.247 52.381 0.00 0.00 0.00 3.51
4750 5831 1.135721 GCAGGGAGAAATTGTGATGGC 59.864 52.381 0.00 0.00 0.00 4.40
4771 5852 2.198827 TGGCACTCCCACACATTAAG 57.801 50.000 0.00 0.00 39.18 1.85
4772 5853 1.702401 TGGCACTCCCACACATTAAGA 59.298 47.619 0.00 0.00 39.18 2.10
4773 5854 2.107378 TGGCACTCCCACACATTAAGAA 59.893 45.455 0.00 0.00 39.18 2.52
4774 5855 3.153919 GGCACTCCCACACATTAAGAAA 58.846 45.455 0.00 0.00 0.00 2.52
4775 5856 3.763897 GGCACTCCCACACATTAAGAAAT 59.236 43.478 0.00 0.00 0.00 2.17
4785 5866 6.432783 CCACACATTAAGAAATTGTACCCAGA 59.567 38.462 0.00 0.00 0.00 3.86
4814 5896 9.418839 TGATGTAGATAGAGATTGGGATATGAG 57.581 37.037 0.00 0.00 0.00 2.90
4829 5912 9.507329 TTGGGATATGAGTGATAAAAAGATAGC 57.493 33.333 0.00 0.00 0.00 2.97
4874 5957 1.340308 CCAATGCAGGTGACATCTGGA 60.340 52.381 17.37 15.16 37.02 3.86
4892 5975 1.067985 GGAAAGCCTTTCAAGAGCAGC 60.068 52.381 18.33 0.00 41.43 5.25
4904 5987 0.467384 AGAGCAGCGATTACATGGCT 59.533 50.000 0.00 0.00 45.60 4.75
4910 5993 0.301687 GCGATTACATGGCTGTGACG 59.698 55.000 0.00 0.00 36.79 4.35
5034 6118 4.371624 TCTTGACCAATCTTGTCACCAT 57.628 40.909 0.00 0.00 0.00 3.55
5069 6153 1.479709 GCTGCTTCCTCCAGAGACTA 58.520 55.000 0.00 0.00 32.03 2.59
5118 6208 7.998081 CAAAATTTTGGAAATCAAGAATCGC 57.002 32.000 21.00 0.00 36.62 4.58
5119 6209 7.574496 CAAAATTTTGGAAATCAAGAATCGCA 58.426 30.769 21.00 0.00 36.62 5.10
5160 6250 5.407995 TGCCATTATTTTGTTTTGCTACAGC 59.592 36.000 0.00 0.00 42.50 4.40
5170 6260 1.021202 TTGCTACAGCGTTTGCAACT 58.979 45.000 0.00 0.00 46.23 3.16
5196 6286 1.792949 CTCTGTTCTTTTGACCCGACG 59.207 52.381 0.00 0.00 0.00 5.12
5199 6289 2.409975 TGTTCTTTTGACCCGACGATC 58.590 47.619 0.00 0.00 0.00 3.69
5200 6290 2.036733 TGTTCTTTTGACCCGACGATCT 59.963 45.455 0.00 0.00 0.00 2.75
5202 6292 2.955614 TCTTTTGACCCGACGATCTTC 58.044 47.619 0.00 0.00 0.00 2.87
5212 6303 2.854777 CCGACGATCTTCAGTGATGTTC 59.145 50.000 0.00 6.49 0.00 3.18
5285 6378 1.078918 TTGCTGAGACGCTGATGGG 60.079 57.895 0.00 0.00 0.00 4.00
5293 6386 2.229302 GAGACGCTGATGGGTATAGGTC 59.771 54.545 0.00 0.00 39.55 3.85
5314 6411 4.995487 GTCGGTATCAGGACACTTTTCTTT 59.005 41.667 0.00 0.00 33.41 2.52
5315 6412 4.994852 TCGGTATCAGGACACTTTTCTTTG 59.005 41.667 0.00 0.00 0.00 2.77
5366 6463 3.060628 CCGTATTTTTGCCGAAATTGCTG 59.939 43.478 0.48 0.00 31.96 4.41
5375 6472 1.679680 CCGAAATTGCTGGATCATGCT 59.320 47.619 9.92 0.00 0.00 3.79
5377 6474 3.504906 CCGAAATTGCTGGATCATGCTAT 59.495 43.478 9.92 5.74 0.00 2.97
5380 6477 5.628193 CGAAATTGCTGGATCATGCTATTTC 59.372 40.000 27.66 27.66 46.85 2.17
5386 6483 4.413760 CTGGATCATGCTATTTCCCCATT 58.586 43.478 0.00 0.00 0.00 3.16
5435 6539 3.550437 CTAGATAAGCACTTGCAGGGT 57.450 47.619 3.62 0.00 45.16 4.34
5436 6540 2.887151 AGATAAGCACTTGCAGGGTT 57.113 45.000 3.62 2.90 45.16 4.11
5437 6541 5.023533 CTAGATAAGCACTTGCAGGGTTA 57.976 43.478 3.62 5.11 45.16 2.85
5438 6542 3.610911 AGATAAGCACTTGCAGGGTTAC 58.389 45.455 3.62 1.12 45.16 2.50
5439 6543 2.940994 TAAGCACTTGCAGGGTTACA 57.059 45.000 3.62 0.00 45.16 2.41
5440 6544 1.318576 AAGCACTTGCAGGGTTACAC 58.681 50.000 3.62 0.00 45.16 2.90
5441 6545 0.474184 AGCACTTGCAGGGTTACACT 59.526 50.000 3.62 0.00 45.16 3.55
5442 6546 1.133792 AGCACTTGCAGGGTTACACTT 60.134 47.619 3.62 0.00 45.16 3.16
5443 6547 1.681264 GCACTTGCAGGGTTACACTTT 59.319 47.619 0.00 0.00 41.59 2.66
5444 6548 2.543653 GCACTTGCAGGGTTACACTTTG 60.544 50.000 0.00 0.00 41.59 2.77
5445 6549 2.687935 CACTTGCAGGGTTACACTTTGT 59.312 45.455 0.00 0.00 0.00 2.83
5485 6825 3.214328 TCTGGAAGACACTTTGGCTTTC 58.786 45.455 0.00 0.00 44.95 2.62
5501 6841 3.440522 GGCTTTCTTCATAACGGAAGCTT 59.559 43.478 0.00 0.00 43.14 3.74
5516 6858 4.451096 CGGAAGCTTCAAGTTAGCAGTAAA 59.549 41.667 27.02 0.00 41.11 2.01
5519 6861 7.024171 GGAAGCTTCAAGTTAGCAGTAAATTC 58.976 38.462 27.02 0.12 41.11 2.17
5531 6873 4.226761 GCAGTAAATTCACTGGTTTTCCG 58.773 43.478 10.80 0.00 45.03 4.30
5534 6876 5.008217 CAGTAAATTCACTGGTTTTCCGTGA 59.992 40.000 0.20 7.44 44.73 4.35
5536 6878 1.305201 TTCACTGGTTTTCCGTGAGC 58.695 50.000 10.02 0.00 45.83 4.26
5566 6909 8.966194 CATTTTCTTTTTGAAGAAAGAGAGCTC 58.034 33.333 5.27 5.27 45.96 4.09
5594 6937 9.388506 CTCTCAAACTTCATATATGTGAAACCT 57.611 33.333 14.83 1.56 37.63 3.50
5623 6967 6.463995 TTTTACACTTGAGAGGCAAAACAT 57.536 33.333 0.00 0.00 35.74 2.71
5631 6975 1.427368 AGAGGCAAAACATACCCCACA 59.573 47.619 0.00 0.00 0.00 4.17
5675 7121 3.004734 CACTTGTTACAGGCCCAAAGAAG 59.995 47.826 14.20 14.20 31.71 2.85
5689 7135 3.569701 CCAAAGAAGCTTCCAGCAAAGTA 59.430 43.478 22.81 0.00 45.56 2.24
5695 7141 5.127031 AGAAGCTTCCAGCAAAGTAAACAAA 59.873 36.000 22.81 0.00 45.56 2.83
5701 7147 5.646606 TCCAGCAAAGTAAACAAAAGACAC 58.353 37.500 0.00 0.00 0.00 3.67
5735 7182 0.262876 AAATCCCCCATCCTCCTTGC 59.737 55.000 0.00 0.00 0.00 4.01
5743 7190 0.539051 CATCCTCCTTGCGAAGTCCT 59.461 55.000 0.00 0.00 0.00 3.85
5744 7191 0.827368 ATCCTCCTTGCGAAGTCCTC 59.173 55.000 0.00 0.00 0.00 3.71
5760 7207 1.135046 CCTCGCAGTAGAATGCATCG 58.865 55.000 0.00 0.00 46.87 3.84
5766 7213 2.157279 GCAGTAGAATGCATCGATCAGC 59.843 50.000 0.00 0.00 45.77 4.26
5783 7230 5.836821 ATCAGCACTGATCTTACTAACGA 57.163 39.130 7.34 0.00 46.57 3.85
5784 7231 5.836821 TCAGCACTGATCTTACTAACGAT 57.163 39.130 0.00 0.00 34.14 3.73
5785 7232 6.208988 TCAGCACTGATCTTACTAACGATT 57.791 37.500 0.00 0.00 34.14 3.34
5793 7240 1.859080 CTTACTAACGATTCGCCAGCC 59.141 52.381 5.86 0.00 0.00 4.85
5794 7241 0.818938 TACTAACGATTCGCCAGCCA 59.181 50.000 5.86 0.00 0.00 4.75
5795 7242 0.178068 ACTAACGATTCGCCAGCCAT 59.822 50.000 5.86 0.00 0.00 4.40
5796 7243 0.583438 CTAACGATTCGCCAGCCATG 59.417 55.000 5.86 0.00 0.00 3.66
5829 7276 4.708726 ACACCTCATTTGCTATTTGCTC 57.291 40.909 0.00 0.00 43.37 4.26
5833 7280 4.095483 ACCTCATTTGCTATTTGCTCGAAG 59.905 41.667 0.00 0.00 43.37 3.79
5883 7331 5.935206 TCACGATTTACCTGTTTTATCTGCA 59.065 36.000 0.00 0.00 0.00 4.41
5884 7332 6.428465 TCACGATTTACCTGTTTTATCTGCAA 59.572 34.615 0.00 0.00 0.00 4.08
5885 7333 7.041030 TCACGATTTACCTGTTTTATCTGCAAA 60.041 33.333 0.00 0.00 0.00 3.68
5886 7334 7.593273 CACGATTTACCTGTTTTATCTGCAAAA 59.407 33.333 0.00 0.00 0.00 2.44
5887 7335 8.138712 ACGATTTACCTGTTTTATCTGCAAAAA 58.861 29.630 0.00 0.00 0.00 1.94
5936 7468 5.497464 TGTCCAACTAGATGAATCACCAA 57.503 39.130 0.79 0.00 0.00 3.67
5937 7469 6.065976 TGTCCAACTAGATGAATCACCAAT 57.934 37.500 0.79 0.00 0.00 3.16
5938 7470 6.115446 TGTCCAACTAGATGAATCACCAATC 58.885 40.000 0.79 0.00 0.00 2.67
5941 7473 6.156775 TCCAACTAGATGAATCACCAATCTCA 59.843 38.462 0.79 0.00 0.00 3.27
5942 7474 6.996879 CCAACTAGATGAATCACCAATCTCAT 59.003 38.462 0.79 0.00 0.00 2.90
5943 7475 7.501559 CCAACTAGATGAATCACCAATCTCATT 59.498 37.037 0.79 0.00 0.00 2.57
5945 7477 8.032045 ACTAGATGAATCACCAATCTCATTCT 57.968 34.615 0.00 0.00 0.00 2.40
5946 7478 8.149647 ACTAGATGAATCACCAATCTCATTCTC 58.850 37.037 0.00 0.00 0.00 2.87
5947 7479 6.896883 AGATGAATCACCAATCTCATTCTCA 58.103 36.000 0.00 0.00 0.00 3.27
5948 7480 7.344134 AGATGAATCACCAATCTCATTCTCAA 58.656 34.615 0.00 0.00 0.00 3.02
5958 7504 3.479489 TCTCATTCTCAAAGCAAGCACA 58.521 40.909 0.00 0.00 0.00 4.57
5976 7522 1.275010 ACAATCCCGGCATTTCCAAAC 59.725 47.619 0.00 0.00 34.01 2.93
5988 7534 4.376146 CATTTCCAAACCGTCCACAAAAT 58.624 39.130 0.00 0.00 0.00 1.82
5989 7535 3.444703 TTCCAAACCGTCCACAAAATG 57.555 42.857 0.00 0.00 0.00 2.32
5998 7544 4.963815 CACAAAATGGACGCCACC 57.036 55.556 0.50 0.00 35.80 4.61
5999 7545 1.288752 CACAAAATGGACGCCACCC 59.711 57.895 0.50 0.00 35.80 4.61
6027 7573 3.255642 ACCACAATCAATTTCCGTTCCTG 59.744 43.478 0.00 0.00 0.00 3.86
6028 7574 3.244976 CACAATCAATTTCCGTTCCTGC 58.755 45.455 0.00 0.00 0.00 4.85
6029 7575 3.057315 CACAATCAATTTCCGTTCCTGCT 60.057 43.478 0.00 0.00 0.00 4.24
6040 7586 1.401905 CGTTCCTGCTGCTTAAATCCC 59.598 52.381 0.00 0.00 0.00 3.85
6060 7606 0.112412 GGGAGCCAGGAACCAAAGAA 59.888 55.000 0.00 0.00 0.00 2.52
6081 7638 2.859165 ATCAGGAACTTGGCGAAAGA 57.141 45.000 4.90 0.00 39.38 2.52
6082 7639 2.859165 TCAGGAACTTGGCGAAAGAT 57.141 45.000 4.90 0.00 39.38 2.40
6083 7640 2.426522 TCAGGAACTTGGCGAAAGATG 58.573 47.619 4.90 0.00 39.38 2.90
6084 7641 1.470098 CAGGAACTTGGCGAAAGATGG 59.530 52.381 4.90 0.00 39.38 3.51
6086 7643 2.025887 AGGAACTTGGCGAAAGATGGAT 60.026 45.455 4.90 0.00 39.38 3.41
6087 7644 3.199946 AGGAACTTGGCGAAAGATGGATA 59.800 43.478 4.90 0.00 39.38 2.59
6088 7645 3.561725 GGAACTTGGCGAAAGATGGATAG 59.438 47.826 4.90 0.00 39.38 2.08
6109 7679 2.358737 CAGGACACCCGCAGAACC 60.359 66.667 0.00 0.00 37.58 3.62
6130 7700 1.296392 CAGGAACCATCTCCACGCA 59.704 57.895 0.00 0.00 38.02 5.24
6156 7726 1.666888 CGGTGCAGCAAATTGTCCTTC 60.667 52.381 17.33 0.00 0.00 3.46
6165 7735 1.538047 AATTGTCCTTCGCATGCTGT 58.462 45.000 17.13 0.00 0.00 4.40
6195 7785 7.285172 TCCACAGAAAGACTTTGATTTTCATCA 59.715 33.333 4.85 0.00 37.67 3.07
6273 7863 3.445096 ACAGAAAACATCCCATTAGCAGC 59.555 43.478 0.00 0.00 0.00 5.25
6275 7865 2.418368 AAACATCCCATTAGCAGCGA 57.582 45.000 0.00 0.00 0.00 4.93
6282 7872 0.583438 CCATTAGCAGCGATTGACCG 59.417 55.000 0.00 0.00 0.00 4.79
6302 7892 2.743938 GCTCGACCGTATCATCACAAT 58.256 47.619 0.00 0.00 0.00 2.71
6309 7899 3.623060 ACCGTATCATCACAATCAGCAAC 59.377 43.478 0.00 0.00 0.00 4.17
6323 7915 1.024271 AGCAACGTGTGTTTCTGCAT 58.976 45.000 8.67 0.00 35.72 3.96
6324 7916 1.405105 AGCAACGTGTGTTTCTGCATT 59.595 42.857 8.67 0.00 35.72 3.56
6343 7939 6.721318 TGCATTAAGGTTCCTGAATACTCTT 58.279 36.000 1.47 0.00 0.00 2.85
6349 7945 6.200878 AGGTTCCTGAATACTCTTCCAAAA 57.799 37.500 0.00 0.00 0.00 2.44
6350 7946 6.794534 AGGTTCCTGAATACTCTTCCAAAAT 58.205 36.000 0.00 0.00 0.00 1.82
6351 7947 7.928873 AGGTTCCTGAATACTCTTCCAAAATA 58.071 34.615 0.00 0.00 0.00 1.40
6352 7948 8.049721 AGGTTCCTGAATACTCTTCCAAAATAG 58.950 37.037 0.00 0.00 0.00 1.73
6353 7949 7.829706 GGTTCCTGAATACTCTTCCAAAATAGT 59.170 37.037 0.00 0.00 0.00 2.12
6354 7950 8.884726 GTTCCTGAATACTCTTCCAAAATAGTC 58.115 37.037 0.00 0.00 0.00 2.59
6355 7951 8.146053 TCCTGAATACTCTTCCAAAATAGTCA 57.854 34.615 0.00 0.00 0.00 3.41
6356 7952 8.260818 TCCTGAATACTCTTCCAAAATAGTCAG 58.739 37.037 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.285488 GCGCTCAAAGATTACAGGTAGC 59.715 50.000 0.00 0.00 0.00 3.58
99 100 1.063616 TCGGCGTGAAGAAGATCGTAG 59.936 52.381 6.85 0.00 0.00 3.51
135 136 5.008613 TCAGCAAACATACCTGTTCTTCAAC 59.991 40.000 0.00 0.00 44.83 3.18
165 166 4.124238 CGTCAAAGTTCAAGTGAGGGTAA 58.876 43.478 0.00 0.00 0.00 2.85
190 191 0.168128 AAGCACGCCGAAAACTATGC 59.832 50.000 0.00 0.00 0.00 3.14
191 192 2.413796 TGTAAGCACGCCGAAAACTATG 59.586 45.455 0.00 0.00 0.00 2.23
238 239 1.097232 TGCATCTACATTGTGCAGGC 58.903 50.000 0.00 0.00 43.30 4.85
250 251 0.984961 AGGCAGGCTCCTTGCATCTA 60.985 55.000 10.79 0.00 45.15 1.98
262 263 1.522580 GACCAAGATCGAGGCAGGC 60.523 63.158 6.41 0.00 0.00 4.85
462 463 0.040514 TTTGTGCGCCTTGTGATTCG 60.041 50.000 4.18 0.00 0.00 3.34
463 464 2.352503 ATTTGTGCGCCTTGTGATTC 57.647 45.000 4.18 0.00 0.00 2.52
464 465 2.818130 AATTTGTGCGCCTTGTGATT 57.182 40.000 4.18 0.00 0.00 2.57
480 481 8.635765 ACTATGTCTGTACCACATCAAAAATT 57.364 30.769 10.11 0.00 35.95 1.82
481 482 8.635765 AACTATGTCTGTACCACATCAAAAAT 57.364 30.769 10.11 0.00 35.95 1.82
626 636 0.445436 GCTGGATGCTGTTCAAGACG 59.555 55.000 0.00 0.00 38.95 4.18
661 685 3.728076 TTACACGATCTATCCAGCACC 57.272 47.619 0.00 0.00 0.00 5.01
683 707 0.179009 AACACAGCACAGCACATCCT 60.179 50.000 0.00 0.00 0.00 3.24
684 708 0.039798 CAACACAGCACAGCACATCC 60.040 55.000 0.00 0.00 0.00 3.51
687 711 0.887247 AAACAACACAGCACAGCACA 59.113 45.000 0.00 0.00 0.00 4.57
688 712 1.133025 AGAAACAACACAGCACAGCAC 59.867 47.619 0.00 0.00 0.00 4.40
689 713 1.132834 CAGAAACAACACAGCACAGCA 59.867 47.619 0.00 0.00 0.00 4.41
767 804 7.341445 ACTCTTCTACATCCTTGTACAGATC 57.659 40.000 0.00 0.00 37.28 2.75
786 823 6.757947 CACCAAACAATTGATCAACAACTCTT 59.242 34.615 13.59 0.00 41.52 2.85
790 827 4.810491 AGCACCAAACAATTGATCAACAAC 59.190 37.500 13.59 0.00 41.52 3.32
791 828 5.021033 AGCACCAAACAATTGATCAACAA 57.979 34.783 13.59 0.00 42.95 2.83
792 829 4.669206 AGCACCAAACAATTGATCAACA 57.331 36.364 13.59 0.00 38.94 3.33
799 836 5.111293 ACTTTCAGAAGCACCAAACAATTG 58.889 37.500 3.24 3.24 36.29 2.32
801 838 5.111293 CAACTTTCAGAAGCACCAAACAAT 58.889 37.500 0.00 0.00 36.29 2.71
803 840 3.509575 ACAACTTTCAGAAGCACCAAACA 59.490 39.130 0.00 0.00 36.29 2.83
807 844 2.682856 GTCACAACTTTCAGAAGCACCA 59.317 45.455 0.00 0.00 36.29 4.17
853 892 2.872245 CAGAAAGCGTCCAAAGTCTTGA 59.128 45.455 0.00 0.00 34.14 3.02
867 906 2.223249 TGCACGTCAAACTTCAGAAAGC 60.223 45.455 0.00 0.00 35.81 3.51
894 941 4.732784 TGAAACTGAAACTGAAACTGCAC 58.267 39.130 0.00 0.00 0.00 4.57
979 1026 3.647771 GGGAGGTTGGCTTCCGGT 61.648 66.667 0.00 0.00 41.35 5.28
1004 1051 3.365265 GGTGCGAGCTGGGGTTTG 61.365 66.667 0.00 0.00 0.00 2.93
1005 1052 3.850098 CTGGTGCGAGCTGGGGTTT 62.850 63.158 0.00 0.00 0.00 3.27
1006 1053 4.335647 CTGGTGCGAGCTGGGGTT 62.336 66.667 0.00 0.00 0.00 4.11
1086 1133 1.457455 GGAGAGCAGGAGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
1176 1649 1.318380 GGAGGAGGAGGATGGGGAA 59.682 63.158 0.00 0.00 0.00 3.97
1695 2494 2.415608 GGTCTCTCCATCGACCGCA 61.416 63.158 0.00 0.00 40.18 5.69
1728 2527 0.983378 CGGACTCCTCCCCTTCCAAT 60.983 60.000 0.00 0.00 31.93 3.16
1890 2692 4.408821 GTGACCATGGCCCTCGCA 62.409 66.667 13.04 0.00 36.38 5.10
2003 2811 2.309528 ATTTCAGGTCGATGCGCTTA 57.690 45.000 9.73 0.00 0.00 3.09
2013 2821 7.607991 TCATAGGACTCTTCAAAATTTCAGGTC 59.392 37.037 0.00 0.00 0.00 3.85
2041 2849 9.851686 ATGTGCAATACTCTATTTTCATTAGGA 57.148 29.630 0.00 0.00 0.00 2.94
2072 2880 9.331282 GTCAGGTAAGCATAGATAAAAGAATGT 57.669 33.333 0.00 0.00 0.00 2.71
2073 2881 9.330063 TGTCAGGTAAGCATAGATAAAAGAATG 57.670 33.333 0.00 0.00 0.00 2.67
2077 2885 9.764363 TGTATGTCAGGTAAGCATAGATAAAAG 57.236 33.333 0.00 0.00 0.00 2.27
2109 2925 4.766404 AATTTTGCTCTGGTTCCTTACG 57.234 40.909 0.00 0.00 0.00 3.18
2172 2988 5.022787 AGGGGAACTAATTTATTTGCTGCA 58.977 37.500 0.00 0.00 0.00 4.41
2217 3037 8.458843 CGGCATATATTCCCTTTATCGAAAAAT 58.541 33.333 0.00 0.00 0.00 1.82
2218 3038 7.446013 ACGGCATATATTCCCTTTATCGAAAAA 59.554 33.333 0.00 0.00 0.00 1.94
2219 3039 6.938030 ACGGCATATATTCCCTTTATCGAAAA 59.062 34.615 0.00 0.00 0.00 2.29
2220 3040 6.370442 CACGGCATATATTCCCTTTATCGAAA 59.630 38.462 0.00 0.00 0.00 3.46
2221 3041 5.872617 CACGGCATATATTCCCTTTATCGAA 59.127 40.000 0.00 0.00 0.00 3.71
2222 3042 5.416083 CACGGCATATATTCCCTTTATCGA 58.584 41.667 0.00 0.00 0.00 3.59
2223 3043 4.034048 GCACGGCATATATTCCCTTTATCG 59.966 45.833 0.00 0.00 0.00 2.92
2224 3044 5.186198 AGCACGGCATATATTCCCTTTATC 58.814 41.667 0.00 0.00 0.00 1.75
2225 3045 5.179452 AGCACGGCATATATTCCCTTTAT 57.821 39.130 0.00 0.00 0.00 1.40
2226 3046 4.634012 AGCACGGCATATATTCCCTTTA 57.366 40.909 0.00 0.00 0.00 1.85
2227 3047 3.508845 AGCACGGCATATATTCCCTTT 57.491 42.857 0.00 0.00 0.00 3.11
2228 3048 3.583086 ACTAGCACGGCATATATTCCCTT 59.417 43.478 0.00 0.00 0.00 3.95
2229 3049 3.055819 CACTAGCACGGCATATATTCCCT 60.056 47.826 0.00 0.00 0.00 4.20
2230 3050 3.056107 TCACTAGCACGGCATATATTCCC 60.056 47.826 0.00 0.00 0.00 3.97
2231 3051 4.188247 TCACTAGCACGGCATATATTCC 57.812 45.455 0.00 0.00 0.00 3.01
2232 3052 5.470368 TCTTCACTAGCACGGCATATATTC 58.530 41.667 0.00 0.00 0.00 1.75
2233 3053 5.468540 TCTTCACTAGCACGGCATATATT 57.531 39.130 0.00 0.00 0.00 1.28
2234 3054 5.667539 ATCTTCACTAGCACGGCATATAT 57.332 39.130 0.00 0.00 0.00 0.86
2241 3061 4.060038 ACCATTATCTTCACTAGCACGG 57.940 45.455 0.00 0.00 0.00 4.94
2254 3074 9.962783 ACTAAGTATTCTACACGAACCATTATC 57.037 33.333 0.00 0.00 33.72 1.75
2381 3201 2.233271 CAACAGCAGTTTGGGATCAGT 58.767 47.619 0.00 0.00 35.28 3.41
2396 3216 4.274950 CACAACCCTAGTGTTAACCAACAG 59.725 45.833 2.48 0.00 45.18 3.16
2420 3240 4.202101 GGACCACAGAGATCTGAGTACATG 60.202 50.000 16.52 3.27 46.59 3.21
2499 3337 8.784043 AGGCTAAAAACATAAACTACAGACAAG 58.216 33.333 0.00 0.00 0.00 3.16
2502 3340 8.095937 ACAGGCTAAAAACATAAACTACAGAC 57.904 34.615 0.00 0.00 0.00 3.51
2547 3385 6.360370 TGATTAATAGGGCACTAGATCACC 57.640 41.667 12.81 0.00 31.54 4.02
2549 3387 8.097038 GTGATTGATTAATAGGGCACTAGATCA 58.903 37.037 12.81 12.81 31.54 2.92
2589 3427 4.202315 GGAACCAACAATTTTGTAGCCCTT 60.202 41.667 0.00 0.00 41.31 3.95
2612 3450 1.949525 CAAATCTTCACCCCGCTATGG 59.050 52.381 0.00 0.00 37.55 2.74
2618 3456 3.118408 TCCATCTACAAATCTTCACCCCG 60.118 47.826 0.00 0.00 0.00 5.73
2663 3501 0.764890 AGTGCTTGTAACAGCCTCCA 59.235 50.000 0.00 0.00 39.25 3.86
2669 3507 5.801947 GCCATAAAATGAGTGCTTGTAACAG 59.198 40.000 0.00 0.00 0.00 3.16
2728 3570 5.242393 AGCAAGCATTCCCATATACAATGTC 59.758 40.000 0.00 0.00 31.29 3.06
2729 3571 5.010314 CAGCAAGCATTCCCATATACAATGT 59.990 40.000 0.00 0.00 31.29 2.71
2733 3575 4.436113 TCAGCAAGCATTCCCATATACA 57.564 40.909 0.00 0.00 0.00 2.29
2740 3582 3.243636 CCATGTATTCAGCAAGCATTCCC 60.244 47.826 0.00 0.00 0.00 3.97
2812 3654 9.276590 CAAATATTATGTTCTGCAGAGTGGATA 57.723 33.333 17.43 12.59 0.00 2.59
2821 3663 6.832520 ACCACACAAATATTATGTTCTGCA 57.167 33.333 3.15 0.00 0.00 4.41
2825 3667 8.532977 AAGCAAACCACACAAATATTATGTTC 57.467 30.769 3.15 0.00 0.00 3.18
3024 3866 3.125829 CCATCTTCCTGTGTTCGTCAATG 59.874 47.826 0.00 0.00 0.00 2.82
3145 3987 1.317613 CCAGTTACAGGTGCTTTGCA 58.682 50.000 0.00 0.00 35.60 4.08
3151 3993 1.810755 GTTTAGGCCAGTTACAGGTGC 59.189 52.381 5.01 0.00 0.00 5.01
3152 3994 3.074412 CTGTTTAGGCCAGTTACAGGTG 58.926 50.000 5.01 0.00 34.14 4.00
3163 4005 6.769134 TTAAAGGCTTTATCTGTTTAGGCC 57.231 37.500 19.65 0.00 38.50 5.19
3210 4053 3.568007 TGGAACAGTTCTGCCACAATTAC 59.432 43.478 13.13 0.00 0.00 1.89
3248 4091 6.365789 TCAAAAGAAATTCGCATTTGATGGAC 59.634 34.615 15.37 0.00 35.67 4.02
3257 4100 9.643693 AATAAACAGATCAAAAGAAATTCGCAT 57.356 25.926 0.00 0.00 0.00 4.73
3332 4175 7.841222 AGCTTCCCAGAATATTTATGAGGTTTT 59.159 33.333 3.79 0.00 0.00 2.43
3348 4192 9.998106 GTAATCAATAGTTATTAGCTTCCCAGA 57.002 33.333 0.00 0.00 0.00 3.86
3380 4224 1.056700 AGTCCTGGCAGAACCACTGT 61.057 55.000 17.94 0.00 46.36 3.55
3433 4285 8.454106 CAGCATAATTAAAGACTGCAGTTACTT 58.546 33.333 22.65 17.41 35.32 2.24
3435 4287 7.752695 ACAGCATAATTAAAGACTGCAGTTAC 58.247 34.615 22.65 9.32 35.32 2.50
3436 4288 7.921786 ACAGCATAATTAAAGACTGCAGTTA 57.078 32.000 22.65 6.74 35.32 2.24
3437 4289 6.824305 ACAGCATAATTAAAGACTGCAGTT 57.176 33.333 22.65 7.90 35.32 3.16
3443 4295 8.115490 AGCAAGAAACAGCATAATTAAAGACT 57.885 30.769 0.00 0.00 0.00 3.24
3477 4329 1.749634 TCGCTCTGGCTTTACTCCTAC 59.250 52.381 0.00 0.00 36.09 3.18
3641 4494 3.013219 GGGTTTCAGAGCCTTGATCTTC 58.987 50.000 0.00 0.00 42.81 2.87
3647 4500 1.815003 GTGATGGGTTTCAGAGCCTTG 59.185 52.381 0.00 0.00 46.39 3.61
3662 4515 8.597167 TCTATTGAGAATATTACCTGGGTGATG 58.403 37.037 7.21 0.00 0.00 3.07
3686 4539 6.882768 AGGTCTGGATCTTAAGTTCAATCT 57.117 37.500 14.07 3.73 0.00 2.40
3724 4577 8.430801 AATTATCTCTAGAATGTGTTGTCTGC 57.569 34.615 0.00 0.00 0.00 4.26
3750 4603 2.951642 GCTGCAACCATAGAGGCATTAA 59.048 45.455 0.00 0.00 43.14 1.40
3922 4779 5.288472 AGCGAAGTAAAAAGCACACAAAAAG 59.712 36.000 0.00 0.00 0.00 2.27
3924 4781 4.739195 AGCGAAGTAAAAAGCACACAAAA 58.261 34.783 0.00 0.00 0.00 2.44
3925 4782 4.364415 AGCGAAGTAAAAAGCACACAAA 57.636 36.364 0.00 0.00 0.00 2.83
3929 4786 6.816640 AGTATGATAGCGAAGTAAAAAGCACA 59.183 34.615 0.00 0.00 0.00 4.57
3932 4789 7.866393 TCCTAGTATGATAGCGAAGTAAAAAGC 59.134 37.037 0.00 0.00 0.00 3.51
3935 4792 9.909644 GAATCCTAGTATGATAGCGAAGTAAAA 57.090 33.333 0.00 0.00 0.00 1.52
3938 4795 6.183360 GCGAATCCTAGTATGATAGCGAAGTA 60.183 42.308 11.89 0.00 0.00 2.24
3943 4800 4.095036 TGAGCGAATCCTAGTATGATAGCG 59.905 45.833 0.00 7.64 33.76 4.26
3945 4802 7.151999 ACTTGAGCGAATCCTAGTATGATAG 57.848 40.000 0.00 0.00 0.00 2.08
3949 4806 4.551388 GGACTTGAGCGAATCCTAGTATG 58.449 47.826 0.00 0.00 0.00 2.39
3950 4807 3.574826 GGGACTTGAGCGAATCCTAGTAT 59.425 47.826 0.00 0.00 0.00 2.12
3951 4808 2.957006 GGGACTTGAGCGAATCCTAGTA 59.043 50.000 0.00 0.00 0.00 1.82
3952 4809 1.757699 GGGACTTGAGCGAATCCTAGT 59.242 52.381 0.00 0.00 0.00 2.57
3953 4810 2.035632 AGGGACTTGAGCGAATCCTAG 58.964 52.381 0.00 0.00 27.25 3.02
4011 4868 1.962807 CACATTCCAGCCTTTGACCAA 59.037 47.619 0.00 0.00 0.00 3.67
4131 4988 9.066892 AGAATCAGCAGGCGATATTTTATTTTA 57.933 29.630 0.00 0.00 0.00 1.52
4147 5004 0.680280 AGCCAAGCCAGAATCAGCAG 60.680 55.000 0.00 0.00 0.00 4.24
4182 5039 2.802816 CCGGAAAATATCAGCGGAGAAG 59.197 50.000 0.00 0.00 35.57 2.85
4183 5040 2.169769 ACCGGAAAATATCAGCGGAGAA 59.830 45.455 9.46 0.00 36.64 2.87
4184 5041 1.760613 ACCGGAAAATATCAGCGGAGA 59.239 47.619 9.46 0.00 36.64 3.71
4185 5042 2.240493 ACCGGAAAATATCAGCGGAG 57.760 50.000 9.46 0.00 36.64 4.63
4186 5043 3.823281 TTACCGGAAAATATCAGCGGA 57.177 42.857 9.46 0.00 36.64 5.54
4187 5044 3.364964 GCATTACCGGAAAATATCAGCGG 60.365 47.826 9.46 0.00 38.42 5.52
4188 5045 3.364964 GGCATTACCGGAAAATATCAGCG 60.365 47.826 9.46 0.00 0.00 5.18
4189 5046 3.821033 AGGCATTACCGGAAAATATCAGC 59.179 43.478 9.46 7.08 46.52 4.26
4190 5047 5.995282 TGTAGGCATTACCGGAAAATATCAG 59.005 40.000 9.46 0.00 46.52 2.90
4191 5048 5.931294 TGTAGGCATTACCGGAAAATATCA 58.069 37.500 9.46 1.18 46.52 2.15
4192 5049 5.411669 CCTGTAGGCATTACCGGAAAATATC 59.588 44.000 9.46 3.52 46.52 1.63
4193 5050 5.163131 ACCTGTAGGCATTACCGGAAAATAT 60.163 40.000 9.46 0.29 46.52 1.28
4194 5051 4.164604 ACCTGTAGGCATTACCGGAAAATA 59.835 41.667 9.46 0.00 46.52 1.40
4210 5067 4.130118 ACTTTGAAGTTGCTGACCTGTAG 58.870 43.478 0.00 0.00 35.21 2.74
4264 5121 4.932200 AGCACCTCAGAGAATTCTTTAACG 59.068 41.667 9.87 0.66 0.00 3.18
4267 5124 4.836825 CCAGCACCTCAGAGAATTCTTTA 58.163 43.478 9.87 0.00 0.00 1.85
4286 5143 1.606224 GCCACCACTTTTTGATGCCAG 60.606 52.381 0.00 0.00 0.00 4.85
4351 5208 2.143876 ACTTGTCCACCTTTGCAAGT 57.856 45.000 0.00 0.00 44.36 3.16
4354 5211 2.136298 TGAACTTGTCCACCTTTGCA 57.864 45.000 0.00 0.00 0.00 4.08
4437 5294 8.963725 TGCTCAAATCATCAATTACTCTTCAAT 58.036 29.630 0.00 0.00 0.00 2.57
4439 5296 7.926674 TGCTCAAATCATCAATTACTCTTCA 57.073 32.000 0.00 0.00 0.00 3.02
4440 5297 9.798994 AAATGCTCAAATCATCAATTACTCTTC 57.201 29.630 0.00 0.00 0.00 2.87
4445 5302 9.962759 GAAACAAATGCTCAAATCATCAATTAC 57.037 29.630 0.00 0.00 0.00 1.89
4451 5308 5.163513 ACCGAAACAAATGCTCAAATCATC 58.836 37.500 0.00 0.00 0.00 2.92
4454 5311 7.581011 ATTTACCGAAACAAATGCTCAAATC 57.419 32.000 0.00 0.00 0.00 2.17
4455 5312 9.139174 CTTATTTACCGAAACAAATGCTCAAAT 57.861 29.630 0.00 0.00 0.00 2.32
4493 5354 5.087391 AGCCTACTGATAGATGATGCATG 57.913 43.478 2.46 0.00 0.00 4.06
4494 5355 8.940489 TTAGCAGCCTACTGATAGATGATGCAT 61.940 40.741 0.00 0.00 45.03 3.96
4524 5385 5.986135 AGGCTCATATGTACAAGACGATTTC 59.014 40.000 0.00 0.00 0.00 2.17
4530 5391 7.169982 GTGAACATAGGCTCATATGTACAAGAC 59.830 40.741 0.00 0.00 43.85 3.01
4574 5439 9.221775 GCAGTTTGCATATTTAATGTACAGTAC 57.778 33.333 1.81 3.49 44.26 2.73
4592 5457 2.079158 TGATCTAGTGCTGCAGTTTGC 58.921 47.619 16.11 1.48 45.29 3.68
4597 5462 5.450592 TCTAAGATGATCTAGTGCTGCAG 57.549 43.478 10.11 10.11 0.00 4.41
4607 5472 9.650539 GCATGTACACATATTCTAAGATGATCT 57.349 33.333 0.00 0.00 34.26 2.75
4643 5508 9.700831 AAATATGGGCTCTAAAATGTAGTTCTT 57.299 29.630 0.00 0.00 0.00 2.52
4651 5732 8.339714 CAATGCAAAAATATGGGCTCTAAAATG 58.660 33.333 0.00 0.00 0.00 2.32
4652 5733 8.048514 ACAATGCAAAAATATGGGCTCTAAAAT 58.951 29.630 0.00 0.00 0.00 1.82
4653 5734 7.333921 CACAATGCAAAAATATGGGCTCTAAAA 59.666 33.333 0.00 0.00 0.00 1.52
4655 5736 6.339730 CACAATGCAAAAATATGGGCTCTAA 58.660 36.000 0.00 0.00 0.00 2.10
4685 5766 6.537660 GGACGCAAATGTAATAGGAAAGTACT 59.462 38.462 0.00 0.00 0.00 2.73
4686 5767 6.314400 TGGACGCAAATGTAATAGGAAAGTAC 59.686 38.462 0.00 0.00 0.00 2.73
4687 5768 6.408035 TGGACGCAAATGTAATAGGAAAGTA 58.592 36.000 0.00 0.00 0.00 2.24
4688 5769 5.250200 TGGACGCAAATGTAATAGGAAAGT 58.750 37.500 0.00 0.00 0.00 2.66
4693 5774 5.163663 ACACAATGGACGCAAATGTAATAGG 60.164 40.000 0.00 0.00 0.00 2.57
4695 5776 5.412904 TCACACAATGGACGCAAATGTAATA 59.587 36.000 0.00 0.00 0.00 0.98
4696 5777 4.217334 TCACACAATGGACGCAAATGTAAT 59.783 37.500 0.00 0.00 0.00 1.89
4697 5778 3.565902 TCACACAATGGACGCAAATGTAA 59.434 39.130 0.00 0.00 0.00 2.41
4700 5781 2.702898 TCACACAATGGACGCAAATG 57.297 45.000 0.00 0.00 0.00 2.32
4703 5784 3.067320 TGATTTTCACACAATGGACGCAA 59.933 39.130 0.00 0.00 0.00 4.85
4705 5786 3.058293 TCTGATTTTCACACAATGGACGC 60.058 43.478 0.00 0.00 0.00 5.19
4709 5790 4.178540 GCCATCTGATTTTCACACAATGG 58.821 43.478 0.00 0.00 0.00 3.16
4710 5791 4.811908 TGCCATCTGATTTTCACACAATG 58.188 39.130 0.00 0.00 0.00 2.82
4711 5792 4.081862 CCTGCCATCTGATTTTCACACAAT 60.082 41.667 0.00 0.00 0.00 2.71
4712 5793 3.256383 CCTGCCATCTGATTTTCACACAA 59.744 43.478 0.00 0.00 0.00 3.33
4713 5794 2.821378 CCTGCCATCTGATTTTCACACA 59.179 45.455 0.00 0.00 0.00 3.72
4714 5795 2.165030 CCCTGCCATCTGATTTTCACAC 59.835 50.000 0.00 0.00 0.00 3.82
4715 5796 2.041485 TCCCTGCCATCTGATTTTCACA 59.959 45.455 0.00 0.00 0.00 3.58
4716 5797 2.686915 CTCCCTGCCATCTGATTTTCAC 59.313 50.000 0.00 0.00 0.00 3.18
4717 5798 2.577563 TCTCCCTGCCATCTGATTTTCA 59.422 45.455 0.00 0.00 0.00 2.69
4718 5799 3.287867 TCTCCCTGCCATCTGATTTTC 57.712 47.619 0.00 0.00 0.00 2.29
4719 5800 3.744940 TTCTCCCTGCCATCTGATTTT 57.255 42.857 0.00 0.00 0.00 1.82
4737 5818 0.243365 TGCCACGCCATCACAATTTC 59.757 50.000 0.00 0.00 0.00 2.17
4749 5830 4.927782 TGTGTGGGAGTGCCACGC 62.928 66.667 33.37 33.37 45.46 5.34
4750 5831 0.321210 TAATGTGTGGGAGTGCCACG 60.321 55.000 26.49 0.00 40.66 4.94
4770 5851 8.328758 TCTACATCAAATCTGGGTACAATTTCT 58.671 33.333 0.00 0.00 0.00 2.52
4771 5852 8.506168 TCTACATCAAATCTGGGTACAATTTC 57.494 34.615 0.00 0.00 0.00 2.17
4773 5854 9.784531 CTATCTACATCAAATCTGGGTACAATT 57.215 33.333 0.00 0.00 0.00 2.32
4774 5855 9.159254 TCTATCTACATCAAATCTGGGTACAAT 57.841 33.333 0.00 0.00 0.00 2.71
4775 5856 8.547481 TCTATCTACATCAAATCTGGGTACAA 57.453 34.615 0.00 0.00 0.00 2.41
4791 5873 8.394040 TCACTCATATCCCAATCTCTATCTACA 58.606 37.037 0.00 0.00 0.00 2.74
4814 5896 9.323985 ACTCAGATGAAGCTATCTTTTTATCAC 57.676 33.333 0.00 0.00 35.28 3.06
4829 5912 7.242079 GTGAATGAATGTCAACTCAGATGAAG 58.758 38.462 0.00 0.00 0.00 3.02
4874 5957 0.595095 CGCTGCTCTTGAAAGGCTTT 59.405 50.000 13.25 13.25 0.00 3.51
4892 5975 0.301687 GCGTCACAGCCATGTAATCG 59.698 55.000 0.00 0.00 37.65 3.34
4904 5987 2.359850 GCCCATGAAGGCGTCACA 60.360 61.111 4.97 0.00 44.57 3.58
5069 6153 2.239654 CCTGGGATGTGGTAGACATGTT 59.760 50.000 0.00 0.00 45.90 2.71
5118 6208 3.465403 CCGGAGCCCCACTCTCTG 61.465 72.222 0.00 0.00 45.48 3.35
5119 6209 3.999285 ACCGGAGCCCCACTCTCT 61.999 66.667 9.46 0.00 45.48 3.10
5170 6260 4.457466 GGGTCAAAAGAACAGAGGTACAA 58.543 43.478 0.00 0.00 0.00 2.41
5212 6303 6.813152 ACCTGTTTTTCAAAATCTCAGTTGTG 59.187 34.615 8.43 0.00 0.00 3.33
5285 6378 4.396522 AGTGTCCTGATACCGACCTATAC 58.603 47.826 0.00 0.00 0.00 1.47
5293 6386 4.755123 ACAAAGAAAAGTGTCCTGATACCG 59.245 41.667 0.00 0.00 0.00 4.02
5314 6411 0.682852 CCGTTCTGGGACTTGGTACA 59.317 55.000 0.00 0.00 0.00 2.90
5315 6412 3.527434 CCGTTCTGGGACTTGGTAC 57.473 57.895 0.00 0.00 0.00 3.34
5347 6444 4.527509 TCCAGCAATTTCGGCAAAAATA 57.472 36.364 0.00 0.00 0.00 1.40
5366 6463 4.410099 TGAATGGGGAAATAGCATGATCC 58.590 43.478 0.00 0.00 0.00 3.36
5375 6472 1.929494 AGTGGGCTGAATGGGGAAATA 59.071 47.619 0.00 0.00 0.00 1.40
5377 6474 0.039618 GAGTGGGCTGAATGGGGAAA 59.960 55.000 0.00 0.00 0.00 3.13
5380 6477 1.072965 GATAGAGTGGGCTGAATGGGG 59.927 57.143 0.00 0.00 0.00 4.96
5386 6483 1.847328 TTCACGATAGAGTGGGCTGA 58.153 50.000 0.00 0.00 42.10 4.26
5431 6535 6.660094 TGAAAGTGTAAACAAAGTGTAACCCT 59.340 34.615 0.00 0.00 37.80 4.34
5433 6537 7.971722 ACATGAAAGTGTAAACAAAGTGTAACC 59.028 33.333 0.00 0.00 37.80 2.85
5435 6539 9.915629 AAACATGAAAGTGTAAACAAAGTGTAA 57.084 25.926 0.00 0.00 0.00 2.41
5436 6540 9.915629 AAAACATGAAAGTGTAAACAAAGTGTA 57.084 25.926 0.00 0.00 0.00 2.90
5437 6541 8.825667 AAAACATGAAAGTGTAAACAAAGTGT 57.174 26.923 0.00 0.00 0.00 3.55
5485 6825 5.613358 AACTTGAAGCTTCCGTTATGAAG 57.387 39.130 23.42 18.68 43.71 3.02
5501 6841 6.296026 ACCAGTGAATTTACTGCTAACTTGA 58.704 36.000 21.68 0.00 45.21 3.02
5516 6858 1.880027 GCTCACGGAAAACCAGTGAAT 59.120 47.619 0.00 0.00 43.25 2.57
5519 6861 0.588252 CAGCTCACGGAAAACCAGTG 59.412 55.000 0.00 0.00 37.24 3.66
5528 6870 2.839486 AGAAAATGTCAGCTCACGGA 57.161 45.000 0.00 0.00 0.00 4.69
5529 6871 3.904136 AAAGAAAATGTCAGCTCACGG 57.096 42.857 0.00 0.00 0.00 4.94
5531 6873 6.974622 TCTTCAAAAAGAAAATGTCAGCTCAC 59.025 34.615 0.00 0.00 38.58 3.51
5566 6909 8.616076 GTTTCACATATATGAAGTTTGAGAGGG 58.384 37.037 19.63 0.00 39.68 4.30
5594 6937 7.575414 TTGCCTCTCAAGTGTAAAAACATTA 57.425 32.000 0.00 0.00 0.00 1.90
5603 6947 5.001232 GGTATGTTTTGCCTCTCAAGTGTA 58.999 41.667 0.00 0.00 35.84 2.90
5631 6975 2.730094 CTGCTGTTTTGCGCCCTT 59.270 55.556 4.18 0.00 35.36 3.95
5689 7135 5.975693 TCAACCTCTTGTGTCTTTTGTTT 57.024 34.783 0.00 0.00 0.00 2.83
5695 7141 8.360390 GGATTTAAATTCAACCTCTTGTGTCTT 58.640 33.333 1.43 0.00 0.00 3.01
5701 7147 5.483583 TGGGGGATTTAAATTCAACCTCTTG 59.516 40.000 16.23 0.00 0.00 3.02
5743 7190 2.034558 TGATCGATGCATTCTACTGCGA 59.965 45.455 0.54 3.49 45.30 5.10
5744 7191 2.397549 TGATCGATGCATTCTACTGCG 58.602 47.619 0.54 0.00 45.30 5.18
5749 7196 3.068590 TCAGTGCTGATCGATGCATTCTA 59.931 43.478 12.90 0.00 41.45 2.10
5752 7199 2.320745 TCAGTGCTGATCGATGCATT 57.679 45.000 12.90 6.78 41.45 3.56
5766 7213 4.441415 GGCGAATCGTTAGTAAGATCAGTG 59.559 45.833 4.07 0.00 0.00 3.66
5774 7221 1.205179 TGGCTGGCGAATCGTTAGTAA 59.795 47.619 4.07 0.00 0.00 2.24
5776 7223 0.178068 ATGGCTGGCGAATCGTTAGT 59.822 50.000 4.07 0.00 0.00 2.24
5793 7240 2.165030 GAGGTGTTCCATTCAAGCCATG 59.835 50.000 0.00 0.00 35.89 3.66
5794 7241 2.225091 TGAGGTGTTCCATTCAAGCCAT 60.225 45.455 0.00 0.00 35.89 4.40
5795 7242 1.144708 TGAGGTGTTCCATTCAAGCCA 59.855 47.619 0.00 0.00 35.89 4.75
5796 7243 1.909700 TGAGGTGTTCCATTCAAGCC 58.090 50.000 0.00 0.00 35.89 4.35
5797 7244 4.240096 CAAATGAGGTGTTCCATTCAAGC 58.760 43.478 0.00 0.00 32.36 4.01
5798 7245 4.021719 AGCAAATGAGGTGTTCCATTCAAG 60.022 41.667 0.00 0.00 32.36 3.02
5804 7251 4.321899 GCAAATAGCAAATGAGGTGTTCCA 60.322 41.667 0.00 0.00 44.79 3.53
5842 7289 3.330720 AGGCGAAGACCTTGGGGG 61.331 66.667 0.00 0.00 36.28 5.40
5885 7333 9.489084 GGCTTTACTCATGGTTTATTTTCTTTT 57.511 29.630 0.00 0.00 0.00 2.27
5886 7334 8.646900 TGGCTTTACTCATGGTTTATTTTCTTT 58.353 29.630 0.00 0.00 0.00 2.52
5887 7335 8.189119 TGGCTTTACTCATGGTTTATTTTCTT 57.811 30.769 0.00 0.00 0.00 2.52
5888 7336 7.775053 TGGCTTTACTCATGGTTTATTTTCT 57.225 32.000 0.00 0.00 0.00 2.52
5889 7337 8.872845 CATTGGCTTTACTCATGGTTTATTTTC 58.127 33.333 0.00 0.00 0.00 2.29
5906 7354 4.922206 TCATCTAGTTGGACATTGGCTTT 58.078 39.130 1.00 0.00 0.00 3.51
5936 7468 4.077108 TGTGCTTGCTTTGAGAATGAGAT 58.923 39.130 0.00 0.00 0.00 2.75
5937 7469 3.479489 TGTGCTTGCTTTGAGAATGAGA 58.521 40.909 0.00 0.00 0.00 3.27
5938 7470 3.909776 TGTGCTTGCTTTGAGAATGAG 57.090 42.857 0.00 0.00 0.00 2.90
5941 7473 3.056322 GGGATTGTGCTTGCTTTGAGAAT 60.056 43.478 0.00 0.00 0.00 2.40
5942 7474 2.297033 GGGATTGTGCTTGCTTTGAGAA 59.703 45.455 0.00 0.00 0.00 2.87
5943 7475 1.888512 GGGATTGTGCTTGCTTTGAGA 59.111 47.619 0.00 0.00 0.00 3.27
5945 7477 0.597568 CGGGATTGTGCTTGCTTTGA 59.402 50.000 0.00 0.00 0.00 2.69
5946 7478 0.388907 CCGGGATTGTGCTTGCTTTG 60.389 55.000 0.00 0.00 0.00 2.77
5947 7479 1.966762 CCGGGATTGTGCTTGCTTT 59.033 52.632 0.00 0.00 0.00 3.51
5948 7480 2.639327 GCCGGGATTGTGCTTGCTT 61.639 57.895 2.18 0.00 0.00 3.91
5958 7504 0.901827 GGTTTGGAAATGCCGGGATT 59.098 50.000 16.43 16.43 40.66 3.01
5988 7534 4.196778 TTGCTTGGGTGGCGTCCA 62.197 61.111 1.28 0.00 0.00 4.02
5989 7535 3.670377 GTTGCTTGGGTGGCGTCC 61.670 66.667 0.00 0.00 0.00 4.79
5994 7540 0.318120 GATTGTGGTTGCTTGGGTGG 59.682 55.000 0.00 0.00 0.00 4.61
5998 7544 3.747529 GGAAATTGATTGTGGTTGCTTGG 59.252 43.478 0.00 0.00 0.00 3.61
5999 7545 3.429543 CGGAAATTGATTGTGGTTGCTTG 59.570 43.478 0.00 0.00 0.00 4.01
6027 7573 1.448119 GCTCCCGGGATTTAAGCAGC 61.448 60.000 27.07 17.85 33.21 5.25
6028 7574 0.819666 GGCTCCCGGGATTTAAGCAG 60.820 60.000 27.07 11.04 34.65 4.24
6029 7575 1.226262 GGCTCCCGGGATTTAAGCA 59.774 57.895 27.07 0.00 34.65 3.91
6040 7586 1.675641 CTTTGGTTCCTGGCTCCCG 60.676 63.158 0.00 0.00 0.00 5.14
6060 7606 4.487714 TCTTTCGCCAAGTTCCTGATAT 57.512 40.909 0.00 0.00 33.66 1.63
6081 7638 2.170607 CGGGTGTCCTGAAACTATCCAT 59.829 50.000 0.00 0.00 29.82 3.41
6082 7639 1.553248 CGGGTGTCCTGAAACTATCCA 59.447 52.381 0.00 0.00 29.82 3.41
6083 7640 1.742750 GCGGGTGTCCTGAAACTATCC 60.743 57.143 0.00 0.00 29.82 2.59
6084 7641 1.066430 TGCGGGTGTCCTGAAACTATC 60.066 52.381 0.00 0.00 29.82 2.08
6086 7643 0.320374 CTGCGGGTGTCCTGAAACTA 59.680 55.000 0.00 0.00 29.82 2.24
6087 7644 1.071471 CTGCGGGTGTCCTGAAACT 59.929 57.895 0.00 0.00 29.82 2.66
6088 7645 0.534203 TTCTGCGGGTGTCCTGAAAC 60.534 55.000 0.00 0.00 29.82 2.78
6109 7679 1.450312 GTGGAGATGGTTCCTGCCG 60.450 63.158 0.00 0.00 38.12 5.69
6130 7700 1.203052 CAATTTGCTGCACCGAGGATT 59.797 47.619 0.00 0.00 0.00 3.01
6156 7726 2.009051 TCTGTGGAATAACAGCATGCG 58.991 47.619 13.01 9.99 45.93 4.73
6165 7735 9.965824 GAAAATCAAAGTCTTTCTGTGGAATAA 57.034 29.630 0.00 0.00 32.50 1.40
6195 7785 3.795688 TCCTCTGGAAAGTCAAATGCT 57.204 42.857 0.00 0.00 0.00 3.79
6273 7863 2.313717 TACGGTCGAGCGGTCAATCG 62.314 60.000 36.44 11.46 40.26 3.34
6275 7865 0.030369 GATACGGTCGAGCGGTCAAT 59.970 55.000 36.44 24.18 32.68 2.57
6282 7872 2.203800 TTGTGATGATACGGTCGAGC 57.796 50.000 4.06 4.06 0.00 5.03
6309 7899 3.896648 ACCTTAATGCAGAAACACACG 57.103 42.857 0.00 0.00 0.00 4.49
6323 7915 6.945636 TGGAAGAGTATTCAGGAACCTTAA 57.054 37.500 0.00 0.00 0.00 1.85
6324 7916 6.945636 TTGGAAGAGTATTCAGGAACCTTA 57.054 37.500 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.