Multiple sequence alignment - TraesCS5A01G408300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G408300 chr5A 100.000 3253 0 0 1 3253 598639528 598636276 0.000000e+00 6008.0
1 TraesCS5A01G408300 chr5A 88.911 496 23 13 2450 2913 78918297 78917802 1.680000e-162 582.0
2 TraesCS5A01G408300 chr5A 88.936 235 24 2 1066 1299 488039733 488039500 4.110000e-74 289.0
3 TraesCS5A01G408300 chr5A 95.098 102 5 0 2975 3076 78917804 78917703 9.340000e-36 161.0
4 TraesCS5A01G408300 chr5A 85.496 131 17 2 3075 3204 480804914 480805043 5.660000e-28 135.0
5 TraesCS5A01G408300 chr6D 91.790 1084 62 11 1 1066 403038864 403039938 0.000000e+00 1483.0
6 TraesCS5A01G408300 chr6D 88.511 235 25 2 1066 1299 457554822 457554589 1.910000e-72 283.0
7 TraesCS5A01G408300 chr4D 91.782 1083 63 10 1 1066 497277504 497276431 0.000000e+00 1483.0
8 TraesCS5A01G408300 chr4D 91.027 1081 71 10 1 1066 508395756 508396825 0.000000e+00 1435.0
9 TraesCS5A01G408300 chr7D 91.690 1083 64 10 1 1066 578029125 578028052 0.000000e+00 1478.0
10 TraesCS5A01G408300 chr7D 91.019 1080 72 10 1 1066 169366753 169365685 0.000000e+00 1434.0
11 TraesCS5A01G408300 chr5D 91.597 1083 65 10 1 1066 13822877 13821804 0.000000e+00 1472.0
12 TraesCS5A01G408300 chr5D 94.428 664 31 2 1772 2429 480155002 480154339 0.000000e+00 1016.0
13 TraesCS5A01G408300 chr5D 88.325 197 11 6 1580 1776 480155715 480155531 3.270000e-55 226.0
14 TraesCS5A01G408300 chr5D 83.158 95 8 7 2448 2539 68403557 68403646 2.690000e-11 80.5
15 TraesCS5A01G408300 chr1D 90.926 1080 73 9 1 1066 410081018 410082086 0.000000e+00 1428.0
16 TraesCS5A01G408300 chr1D 91.564 486 18 4 2450 2913 366162697 366163181 0.000000e+00 649.0
17 TraesCS5A01G408300 chr1D 91.102 236 18 3 1066 1299 299724952 299724718 1.880000e-82 316.0
18 TraesCS5A01G408300 chr1D 80.435 414 61 16 1787 2193 63544066 63544466 6.820000e-77 298.0
19 TraesCS5A01G408300 chr1D 94.118 102 4 1 2975 3076 366163179 366163278 1.560000e-33 154.0
20 TraesCS5A01G408300 chr1D 89.855 69 6 1 2903 2970 279239759 279239691 1.610000e-13 87.9
21 TraesCS5A01G408300 chr1D 84.615 65 8 2 2450 2513 398052092 398052155 2.710000e-06 63.9
22 TraesCS5A01G408300 chr4B 91.202 1057 72 9 1 1045 642221776 642220729 0.000000e+00 1417.0
23 TraesCS5A01G408300 chr4B 80.462 476 76 10 1787 2249 50399960 50399489 6.680000e-92 348.0
24 TraesCS5A01G408300 chr4B 80.462 476 76 10 1787 2249 50443679 50444150 6.680000e-92 348.0
25 TraesCS5A01G408300 chr4A 90.590 1084 80 9 1 1066 728094493 728093414 0.000000e+00 1417.0
26 TraesCS5A01G408300 chr4A 91.837 49 3 1 2905 2953 643277313 643277266 2.090000e-07 67.6
27 TraesCS5A01G408300 chr4A 91.837 49 3 1 2905 2953 643351354 643351307 2.090000e-07 67.6
28 TraesCS5A01G408300 chr2B 90.397 1083 76 10 2 1066 652231973 652230901 0.000000e+00 1399.0
29 TraesCS5A01G408300 chr2B 91.595 464 31 3 2450 2913 743317081 743317536 4.580000e-178 634.0
30 TraesCS5A01G408300 chr2B 91.595 464 30 3 2450 2913 543161909 543161455 1.650000e-177 632.0
31 TraesCS5A01G408300 chr2B 92.308 286 19 3 2633 2918 87419179 87418897 1.410000e-108 403.0
32 TraesCS5A01G408300 chr2B 95.098 102 5 0 2975 3076 743317534 743317635 9.340000e-36 161.0
33 TraesCS5A01G408300 chr2B 84.507 71 6 4 2911 2976 577968750 577968820 7.530000e-07 65.8
34 TraesCS5A01G408300 chr6B 89.518 1078 75 15 1 1066 189659144 189658093 0.000000e+00 1330.0
35 TraesCS5A01G408300 chr6B 94.468 235 12 1 1066 1299 690999343 690999109 8.580000e-96 361.0
36 TraesCS5A01G408300 chr6B 81.280 422 52 8 2498 2913 36458882 36458482 1.880000e-82 316.0
37 TraesCS5A01G408300 chr6B 92.035 226 13 3 1074 1299 45523870 45524090 2.440000e-81 313.0
38 TraesCS5A01G408300 chr6B 76.471 391 64 15 565 942 299734402 299734027 1.540000e-43 187.0
39 TraesCS5A01G408300 chr6B 90.196 102 10 0 2975 3076 36458484 36458383 2.040000e-27 134.0
40 TraesCS5A01G408300 chr2D 89.197 1083 83 12 1 1066 31596365 31595300 0.000000e+00 1321.0
41 TraesCS5A01G408300 chr2D 93.644 236 12 2 1067 1299 42092619 42092384 1.860000e-92 350.0
42 TraesCS5A01G408300 chr2D 91.304 184 13 3 3064 3244 375577495 375577312 6.970000e-62 248.0
43 TraesCS5A01G408300 chr2D 91.228 171 12 3 3077 3244 181258535 181258705 2.520000e-56 230.0
44 TraesCS5A01G408300 chr2D 83.459 133 20 2 3074 3204 375575879 375576011 4.410000e-24 122.0
45 TraesCS5A01G408300 chr2D 82.051 78 14 0 2450 2527 79702895 79702972 2.090000e-07 67.6
46 TraesCS5A01G408300 chr2D 90.385 52 1 1 2926 2977 326216598 326216551 7.530000e-07 65.8
47 TraesCS5A01G408300 chr6A 87.669 1111 73 18 1 1066 308062387 308061296 0.000000e+00 1234.0
48 TraesCS5A01G408300 chr6A 88.439 173 15 4 3077 3244 467598973 467598801 1.530000e-48 204.0
49 TraesCS5A01G408300 chr6A 88.690 168 15 3 3081 3244 467597248 467597415 5.500000e-48 202.0
50 TraesCS5A01G408300 chr5B 93.601 547 35 0 1783 2329 588156417 588155871 0.000000e+00 817.0
51 TraesCS5A01G408300 chr5B 86.250 240 27 3 1324 1563 588157887 588157654 4.170000e-64 255.0
52 TraesCS5A01G408300 chr5B 76.102 431 86 14 1787 2210 441811578 441811158 3.290000e-50 209.0
53 TraesCS5A01G408300 chr5B 97.321 112 3 0 2807 2918 11360605 11360494 1.190000e-44 191.0
54 TraesCS5A01G408300 chr5B 94.505 91 5 0 1555 1645 588157224 588157134 1.220000e-29 141.0
55 TraesCS5A01G408300 chr5B 82.524 103 14 3 2327 2429 588155805 588155707 1.610000e-13 87.9
56 TraesCS5A01G408300 chr5B 94.286 35 2 0 1296 1330 588157939 588157905 2.000000e-03 54.7
57 TraesCS5A01G408300 chr3A 92.896 366 12 6 2556 2913 79456461 79456820 1.340000e-143 520.0
58 TraesCS5A01G408300 chr3A 96.491 285 10 0 2624 2908 733266190 733266474 3.800000e-129 472.0
59 TraesCS5A01G408300 chr3A 96.078 102 4 0 2975 3076 733281759 733281860 2.010000e-37 167.0
60 TraesCS5A01G408300 chr3A 95.098 102 5 0 2975 3076 79456818 79456919 9.340000e-36 161.0
61 TraesCS5A01G408300 chr3A 92.308 65 3 2 2914 2976 197847581 197847517 1.240000e-14 91.6
62 TraesCS5A01G408300 chr3B 80.042 476 78 12 1787 2249 144070200 144070671 1.450000e-88 337.0
63 TraesCS5A01G408300 chr3B 79.832 476 79 12 1787 2249 144057775 144057304 6.730000e-87 331.0
64 TraesCS5A01G408300 chr3D 80.482 456 72 10 1787 2229 92783755 92784206 1.870000e-87 333.0
65 TraesCS5A01G408300 chr3D 80.044 456 74 10 1787 2229 92750230 92749779 4.050000e-84 322.0
66 TraesCS5A01G408300 chr3D 80.952 252 30 8 2471 2720 573144830 573144595 1.990000e-42 183.0
67 TraesCS5A01G408300 chr1A 90.517 232 21 1 1068 1299 374131386 374131156 4.080000e-79 305.0
68 TraesCS5A01G408300 chr1A 89.362 235 22 3 1066 1299 483036327 483036095 3.170000e-75 292.0
69 TraesCS5A01G408300 chr1A 95.531 179 8 0 3075 3253 452263399 452263577 1.480000e-73 287.0
70 TraesCS5A01G408300 chr1B 82.286 350 48 14 1879 2221 101519803 101520145 1.140000e-74 291.0
71 TraesCS5A01G408300 chr1B 79.186 442 72 17 1787 2221 101591228 101590800 4.110000e-74 289.0
72 TraesCS5A01G408300 chr1B 88.439 173 17 3 3075 3244 499655256 499655084 4.250000e-49 206.0
73 TraesCS5A01G408300 chr1B 87.671 73 8 1 2450 2522 654078175 654078246 2.080000e-12 84.2
74 TraesCS5A01G408300 chr2A 88.936 235 23 3 1066 1299 511465060 511464828 1.480000e-73 287.0
75 TraesCS5A01G408300 chr7A 90.058 171 14 3 3077 3244 230485222 230485052 5.460000e-53 219.0
76 TraesCS5A01G408300 chr7A 86.905 84 6 5 2895 2976 554491938 554491858 4.470000e-14 89.8
77 TraesCS5A01G408300 chr7A 84.615 65 8 2 2450 2513 635416555 635416492 2.710000e-06 63.9
78 TraesCS5A01G408300 chr7B 86.022 93 9 4 2440 2531 86701991 86701902 2.670000e-16 97.1
79 TraesCS5A01G408300 chr7B 90.385 52 4 1 2903 2953 570099283 570099334 2.090000e-07 67.6
80 TraesCS5A01G408300 chr7B 84.507 71 6 2 2906 2976 53250573 53250638 7.530000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G408300 chr5A 598636276 598639528 3252 True 6008.00 6008 100.0000 1 3253 1 chr5A.!!$R2 3252
1 TraesCS5A01G408300 chr5A 78917703 78918297 594 True 371.50 582 92.0045 2450 3076 2 chr5A.!!$R3 626
2 TraesCS5A01G408300 chr6D 403038864 403039938 1074 False 1483.00 1483 91.7900 1 1066 1 chr6D.!!$F1 1065
3 TraesCS5A01G408300 chr4D 497276431 497277504 1073 True 1483.00 1483 91.7820 1 1066 1 chr4D.!!$R1 1065
4 TraesCS5A01G408300 chr4D 508395756 508396825 1069 False 1435.00 1435 91.0270 1 1066 1 chr4D.!!$F1 1065
5 TraesCS5A01G408300 chr7D 578028052 578029125 1073 True 1478.00 1478 91.6900 1 1066 1 chr7D.!!$R2 1065
6 TraesCS5A01G408300 chr7D 169365685 169366753 1068 True 1434.00 1434 91.0190 1 1066 1 chr7D.!!$R1 1065
7 TraesCS5A01G408300 chr5D 13821804 13822877 1073 True 1472.00 1472 91.5970 1 1066 1 chr5D.!!$R1 1065
8 TraesCS5A01G408300 chr5D 480154339 480155715 1376 True 621.00 1016 91.3765 1580 2429 2 chr5D.!!$R2 849
9 TraesCS5A01G408300 chr1D 410081018 410082086 1068 False 1428.00 1428 90.9260 1 1066 1 chr1D.!!$F3 1065
10 TraesCS5A01G408300 chr1D 366162697 366163278 581 False 401.50 649 92.8410 2450 3076 2 chr1D.!!$F4 626
11 TraesCS5A01G408300 chr4B 642220729 642221776 1047 True 1417.00 1417 91.2020 1 1045 1 chr4B.!!$R2 1044
12 TraesCS5A01G408300 chr4A 728093414 728094493 1079 True 1417.00 1417 90.5900 1 1066 1 chr4A.!!$R3 1065
13 TraesCS5A01G408300 chr2B 652230901 652231973 1072 True 1399.00 1399 90.3970 2 1066 1 chr2B.!!$R3 1064
14 TraesCS5A01G408300 chr2B 743317081 743317635 554 False 397.50 634 93.3465 2450 3076 2 chr2B.!!$F2 626
15 TraesCS5A01G408300 chr6B 189658093 189659144 1051 True 1330.00 1330 89.5180 1 1066 1 chr6B.!!$R1 1065
16 TraesCS5A01G408300 chr2D 31595300 31596365 1065 True 1321.00 1321 89.1970 1 1066 1 chr2D.!!$R1 1065
17 TraesCS5A01G408300 chr6A 308061296 308062387 1091 True 1234.00 1234 87.6690 1 1066 1 chr6A.!!$R1 1065
18 TraesCS5A01G408300 chr5B 588155707 588157939 2232 True 271.12 817 90.2332 1296 2429 5 chr5B.!!$R3 1133

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 946 0.381801 GTGTTGTGCTCCTGGTTGTG 59.618 55.0 0.0 0.0 0.0 3.33 F
1229 1296 0.038166 AATGATGTTCCGCCCTGTGT 59.962 50.0 0.0 0.0 0.0 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 3052 0.534203 GTCCACACGTCCACCATTGT 60.534 55.0 0.00 0.0 0.0 2.71 R
3192 4491 0.030773 TGTGCGCGTAAAAATTGCCA 59.969 45.0 8.43 0.0 0.0 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
183 200 7.337942 ACAAGAATCCCTACAGAAATGTTCATC 59.662 37.037 0.00 0.00 0.00 2.92
310 331 3.082548 GGAGTGCTCATAGCCGTATCTA 58.917 50.000 1.41 0.00 41.51 1.98
432 453 4.593956 ACATGATCCCTCTTTCTGAAACC 58.406 43.478 0.00 0.00 0.00 3.27
473 494 1.436600 AGAAGCTCGCAATGACACAG 58.563 50.000 0.00 0.00 0.00 3.66
498 542 9.987272 AGAGAAAATCGTATTCATCACATCATA 57.013 29.630 0.00 0.00 0.00 2.15
562 610 8.631480 ACATGAATGCATCACATAATCTATGT 57.369 30.769 15.60 10.00 41.93 2.29
563 611 9.729281 ACATGAATGCATCACATAATCTATGTA 57.271 29.630 15.60 0.00 41.93 2.29
637 686 1.617322 AATCGATACTCGCCTAGCCA 58.383 50.000 0.00 0.00 40.21 4.75
739 788 1.893137 ACGTCTTGGACATAGTGCTGA 59.107 47.619 0.00 0.00 32.09 4.26
832 892 1.404986 CGAAGACGGAAGGCACCATAA 60.405 52.381 2.06 0.00 46.78 1.90
840 900 3.997021 CGGAAGGCACCATAAGATGATAC 59.003 47.826 2.06 0.00 0.00 2.24
881 942 2.591715 GCGTGTTGTGCTCCTGGT 60.592 61.111 0.00 0.00 0.00 4.00
882 943 2.186826 GCGTGTTGTGCTCCTGGTT 61.187 57.895 0.00 0.00 0.00 3.67
883 944 1.648720 CGTGTTGTGCTCCTGGTTG 59.351 57.895 0.00 0.00 0.00 3.77
884 945 1.095228 CGTGTTGTGCTCCTGGTTGT 61.095 55.000 0.00 0.00 0.00 3.32
885 946 0.381801 GTGTTGTGCTCCTGGTTGTG 59.618 55.000 0.00 0.00 0.00 3.33
886 947 0.751277 TGTTGTGCTCCTGGTTGTGG 60.751 55.000 0.00 0.00 0.00 4.17
887 948 0.465460 GTTGTGCTCCTGGTTGTGGA 60.465 55.000 0.00 0.00 0.00 4.02
888 949 0.465460 TTGTGCTCCTGGTTGTGGAC 60.465 55.000 0.00 0.00 0.00 4.02
963 1030 1.758514 ATCATCGTCCGCTGGGTCT 60.759 57.895 0.00 0.00 33.83 3.85
1066 1133 3.505386 AGATCGATCTATTCTGCTGGGT 58.495 45.455 26.27 0.00 34.85 4.51
1067 1134 3.900601 AGATCGATCTATTCTGCTGGGTT 59.099 43.478 26.27 0.00 34.85 4.11
1068 1135 3.459232 TCGATCTATTCTGCTGGGTTG 57.541 47.619 0.00 0.00 0.00 3.77
1069 1136 2.103094 TCGATCTATTCTGCTGGGTTGG 59.897 50.000 0.00 0.00 0.00 3.77
1070 1137 2.158900 CGATCTATTCTGCTGGGTTGGT 60.159 50.000 0.00 0.00 0.00 3.67
1071 1138 3.682718 CGATCTATTCTGCTGGGTTGGTT 60.683 47.826 0.00 0.00 0.00 3.67
1072 1139 3.071874 TCTATTCTGCTGGGTTGGTTG 57.928 47.619 0.00 0.00 0.00 3.77
1073 1140 2.642311 TCTATTCTGCTGGGTTGGTTGA 59.358 45.455 0.00 0.00 0.00 3.18
1074 1141 2.610438 ATTCTGCTGGGTTGGTTGAT 57.390 45.000 0.00 0.00 0.00 2.57
1075 1142 1.909700 TTCTGCTGGGTTGGTTGATC 58.090 50.000 0.00 0.00 0.00 2.92
1076 1143 1.067295 TCTGCTGGGTTGGTTGATCT 58.933 50.000 0.00 0.00 0.00 2.75
1077 1144 1.171308 CTGCTGGGTTGGTTGATCTG 58.829 55.000 0.00 0.00 0.00 2.90
1078 1145 0.770499 TGCTGGGTTGGTTGATCTGA 59.230 50.000 0.00 0.00 0.00 3.27
1079 1146 1.144708 TGCTGGGTTGGTTGATCTGAA 59.855 47.619 0.00 0.00 0.00 3.02
1080 1147 1.815003 GCTGGGTTGGTTGATCTGAAG 59.185 52.381 0.00 0.00 0.00 3.02
1081 1148 2.553028 GCTGGGTTGGTTGATCTGAAGA 60.553 50.000 0.00 0.00 0.00 2.87
1082 1149 3.754965 CTGGGTTGGTTGATCTGAAGAA 58.245 45.455 0.00 0.00 0.00 2.52
1083 1150 3.754965 TGGGTTGGTTGATCTGAAGAAG 58.245 45.455 0.00 0.00 0.00 2.85
1084 1151 3.084786 GGGTTGGTTGATCTGAAGAAGG 58.915 50.000 0.00 0.00 0.00 3.46
1085 1152 3.244911 GGGTTGGTTGATCTGAAGAAGGA 60.245 47.826 0.00 0.00 0.00 3.36
1086 1153 4.398319 GGTTGGTTGATCTGAAGAAGGAA 58.602 43.478 0.00 0.00 0.00 3.36
1087 1154 4.457257 GGTTGGTTGATCTGAAGAAGGAAG 59.543 45.833 0.00 0.00 0.00 3.46
1088 1155 3.679389 TGGTTGATCTGAAGAAGGAAGC 58.321 45.455 0.00 0.00 0.00 3.86
1089 1156 3.328931 TGGTTGATCTGAAGAAGGAAGCT 59.671 43.478 0.00 0.00 0.00 3.74
1090 1157 3.938334 GGTTGATCTGAAGAAGGAAGCTC 59.062 47.826 0.00 0.00 0.00 4.09
1091 1158 4.323409 GGTTGATCTGAAGAAGGAAGCTCT 60.323 45.833 0.00 0.00 0.00 4.09
1092 1159 5.244755 GTTGATCTGAAGAAGGAAGCTCTT 58.755 41.667 0.00 0.00 35.82 2.85
1093 1160 6.402222 GTTGATCTGAAGAAGGAAGCTCTTA 58.598 40.000 0.00 0.00 33.24 2.10
1094 1161 6.219417 TGATCTGAAGAAGGAAGCTCTTAG 57.781 41.667 0.00 0.00 33.24 2.18
1095 1162 4.464069 TCTGAAGAAGGAAGCTCTTAGC 57.536 45.455 0.00 0.00 42.84 3.09
1127 1194 8.707938 AAGCTGATTAATAACTTTCAATTGGC 57.292 30.769 5.42 0.00 0.00 4.52
1128 1195 8.071177 AGCTGATTAATAACTTTCAATTGGCT 57.929 30.769 5.42 0.00 0.00 4.75
1129 1196 9.189156 AGCTGATTAATAACTTTCAATTGGCTA 57.811 29.630 5.42 0.00 0.00 3.93
1130 1197 9.801873 GCTGATTAATAACTTTCAATTGGCTAA 57.198 29.630 5.42 0.00 0.00 3.09
1139 1206 7.308782 ACTTTCAATTGGCTAAGATTAGTCG 57.691 36.000 17.15 0.00 38.19 4.18
1140 1207 6.316390 ACTTTCAATTGGCTAAGATTAGTCGG 59.684 38.462 17.15 0.00 38.19 4.79
1141 1208 5.353394 TCAATTGGCTAAGATTAGTCGGT 57.647 39.130 5.42 0.00 38.19 4.69
1142 1209 5.357257 TCAATTGGCTAAGATTAGTCGGTC 58.643 41.667 5.42 0.00 38.19 4.79
1143 1210 3.431922 TTGGCTAAGATTAGTCGGTCG 57.568 47.619 0.17 0.00 38.19 4.79
1144 1211 1.679680 TGGCTAAGATTAGTCGGTCGG 59.320 52.381 0.17 0.00 38.19 4.79
1145 1212 1.602416 GGCTAAGATTAGTCGGTCGGC 60.602 57.143 1.82 0.00 33.32 5.54
1146 1213 1.925068 GCTAAGATTAGTCGGTCGGCG 60.925 57.143 0.00 0.00 33.32 6.46
1147 1214 1.600957 CTAAGATTAGTCGGTCGGCGA 59.399 52.381 4.99 4.99 0.00 5.54
1148 1215 0.813184 AAGATTAGTCGGTCGGCGAA 59.187 50.000 12.92 0.00 0.00 4.70
1149 1216 1.030457 AGATTAGTCGGTCGGCGAAT 58.970 50.000 12.92 0.00 0.00 3.34
1150 1217 1.129326 GATTAGTCGGTCGGCGAATG 58.871 55.000 12.92 7.31 0.00 2.67
1151 1218 0.458669 ATTAGTCGGTCGGCGAATGT 59.541 50.000 12.92 0.00 0.00 2.71
1152 1219 0.457166 TTAGTCGGTCGGCGAATGTG 60.457 55.000 12.92 1.40 0.00 3.21
1153 1220 2.274232 TAGTCGGTCGGCGAATGTGG 62.274 60.000 12.92 0.00 0.00 4.17
1154 1221 3.687102 TCGGTCGGCGAATGTGGT 61.687 61.111 12.92 0.00 0.00 4.16
1155 1222 3.487202 CGGTCGGCGAATGTGGTG 61.487 66.667 12.92 0.00 0.00 4.17
1156 1223 3.124921 GGTCGGCGAATGTGGTGG 61.125 66.667 12.92 0.00 0.00 4.61
1157 1224 3.799755 GTCGGCGAATGTGGTGGC 61.800 66.667 12.92 0.00 0.00 5.01
1158 1225 4.015406 TCGGCGAATGTGGTGGCT 62.015 61.111 7.35 0.00 0.00 4.75
1159 1226 3.499737 CGGCGAATGTGGTGGCTC 61.500 66.667 0.00 0.00 0.00 4.70
1160 1227 2.359850 GGCGAATGTGGTGGCTCA 60.360 61.111 0.00 0.00 0.00 4.26
1161 1228 1.750399 GGCGAATGTGGTGGCTCAT 60.750 57.895 0.00 0.00 0.00 2.90
1162 1229 1.315257 GGCGAATGTGGTGGCTCATT 61.315 55.000 0.00 0.00 37.04 2.57
1163 1230 0.527565 GCGAATGTGGTGGCTCATTT 59.472 50.000 0.00 0.00 34.92 2.32
1164 1231 1.468054 GCGAATGTGGTGGCTCATTTC 60.468 52.381 0.00 0.00 34.92 2.17
1165 1232 1.811965 CGAATGTGGTGGCTCATTTCA 59.188 47.619 0.00 0.00 34.92 2.69
1166 1233 2.424601 CGAATGTGGTGGCTCATTTCAT 59.575 45.455 0.00 0.00 34.92 2.57
1167 1234 3.627123 CGAATGTGGTGGCTCATTTCATA 59.373 43.478 0.00 0.00 34.92 2.15
1168 1235 4.260907 CGAATGTGGTGGCTCATTTCATAG 60.261 45.833 0.00 0.00 34.92 2.23
1169 1236 2.368439 TGTGGTGGCTCATTTCATAGC 58.632 47.619 0.00 0.00 38.03 2.97
1170 1237 2.290832 TGTGGTGGCTCATTTCATAGCA 60.291 45.455 0.00 0.00 40.61 3.49
1171 1238 2.754552 GTGGTGGCTCATTTCATAGCAA 59.245 45.455 0.00 0.00 40.61 3.91
1172 1239 3.193267 GTGGTGGCTCATTTCATAGCAAA 59.807 43.478 0.00 0.00 40.61 3.68
1173 1240 3.444742 TGGTGGCTCATTTCATAGCAAAG 59.555 43.478 0.00 0.00 40.61 2.77
1174 1241 3.445096 GGTGGCTCATTTCATAGCAAAGT 59.555 43.478 0.00 0.00 40.61 2.66
1175 1242 4.082026 GGTGGCTCATTTCATAGCAAAGTT 60.082 41.667 0.00 0.00 40.61 2.66
1176 1243 5.473039 GTGGCTCATTTCATAGCAAAGTTT 58.527 37.500 0.00 0.00 40.61 2.66
1177 1244 6.350110 GGTGGCTCATTTCATAGCAAAGTTTA 60.350 38.462 0.00 0.00 40.61 2.01
1178 1245 6.749118 GTGGCTCATTTCATAGCAAAGTTTAG 59.251 38.462 0.00 0.00 40.61 1.85
1179 1246 6.434028 TGGCTCATTTCATAGCAAAGTTTAGT 59.566 34.615 0.00 0.00 40.61 2.24
1180 1247 7.039784 TGGCTCATTTCATAGCAAAGTTTAGTT 60.040 33.333 0.00 0.00 40.61 2.24
1181 1248 7.814587 GGCTCATTTCATAGCAAAGTTTAGTTT 59.185 33.333 0.00 0.00 40.61 2.66
1182 1249 9.196552 GCTCATTTCATAGCAAAGTTTAGTTTT 57.803 29.630 0.00 0.00 38.63 2.43
1187 1254 9.862371 TTTCATAGCAAAGTTTAGTTTTGACAA 57.138 25.926 2.18 0.00 37.65 3.18
1193 1260 9.899226 AGCAAAGTTTAGTTTTGACAATAGATC 57.101 29.630 2.18 0.00 37.65 2.75
1194 1261 9.129209 GCAAAGTTTAGTTTTGACAATAGATCC 57.871 33.333 2.18 0.00 37.65 3.36
1195 1262 9.329913 CAAAGTTTAGTTTTGACAATAGATCCG 57.670 33.333 0.00 0.00 37.65 4.18
1196 1263 8.842358 AAGTTTAGTTTTGACAATAGATCCGA 57.158 30.769 0.00 0.00 0.00 4.55
1197 1264 9.449719 AAGTTTAGTTTTGACAATAGATCCGAT 57.550 29.630 0.00 0.00 0.00 4.18
1198 1265 8.883731 AGTTTAGTTTTGACAATAGATCCGATG 58.116 33.333 0.00 0.00 0.00 3.84
1199 1266 7.786178 TTAGTTTTGACAATAGATCCGATGG 57.214 36.000 0.00 0.00 0.00 3.51
1200 1267 5.745227 AGTTTTGACAATAGATCCGATGGT 58.255 37.500 0.00 0.00 0.00 3.55
1201 1268 6.884832 AGTTTTGACAATAGATCCGATGGTA 58.115 36.000 0.00 0.00 0.00 3.25
1202 1269 7.509546 AGTTTTGACAATAGATCCGATGGTAT 58.490 34.615 0.00 0.00 0.00 2.73
1203 1270 7.993183 AGTTTTGACAATAGATCCGATGGTATT 59.007 33.333 0.00 0.00 0.00 1.89
1204 1271 7.962964 TTTGACAATAGATCCGATGGTATTC 57.037 36.000 0.00 0.00 0.00 1.75
1205 1272 6.918067 TGACAATAGATCCGATGGTATTCT 57.082 37.500 0.00 0.00 0.00 2.40
1206 1273 7.303182 TGACAATAGATCCGATGGTATTCTT 57.697 36.000 0.00 0.00 0.00 2.52
1207 1274 8.417273 TGACAATAGATCCGATGGTATTCTTA 57.583 34.615 0.00 0.00 0.00 2.10
1208 1275 9.035890 TGACAATAGATCCGATGGTATTCTTAT 57.964 33.333 0.00 0.00 0.00 1.73
1209 1276 9.877178 GACAATAGATCCGATGGTATTCTTATT 57.123 33.333 0.00 0.00 0.00 1.40
1222 1289 8.094798 TGGTATTCTTATTAATGATGTTCCGC 57.905 34.615 0.00 0.00 0.00 5.54
1223 1290 7.174253 TGGTATTCTTATTAATGATGTTCCGCC 59.826 37.037 0.00 0.00 0.00 6.13
1224 1291 6.575162 ATTCTTATTAATGATGTTCCGCCC 57.425 37.500 0.00 0.00 0.00 6.13
1225 1292 5.304686 TCTTATTAATGATGTTCCGCCCT 57.695 39.130 0.00 0.00 0.00 5.19
1226 1293 5.063204 TCTTATTAATGATGTTCCGCCCTG 58.937 41.667 0.00 0.00 0.00 4.45
1227 1294 2.799126 TTAATGATGTTCCGCCCTGT 57.201 45.000 0.00 0.00 0.00 4.00
1228 1295 2.036958 TAATGATGTTCCGCCCTGTG 57.963 50.000 0.00 0.00 0.00 3.66
1229 1296 0.038166 AATGATGTTCCGCCCTGTGT 59.962 50.000 0.00 0.00 0.00 3.72
1230 1297 0.677731 ATGATGTTCCGCCCTGTGTG 60.678 55.000 0.00 0.00 0.00 3.82
1231 1298 2.034066 ATGTTCCGCCCTGTGTGG 59.966 61.111 0.00 0.00 46.66 4.17
1232 1299 2.748058 GATGTTCCGCCCTGTGTGGT 62.748 60.000 0.00 0.00 45.41 4.16
1233 1300 2.978010 GTTCCGCCCTGTGTGGTG 60.978 66.667 0.00 0.00 45.41 4.17
1234 1301 3.164977 TTCCGCCCTGTGTGGTGA 61.165 61.111 0.00 0.00 45.41 4.02
1235 1302 2.747443 TTCCGCCCTGTGTGGTGAA 61.747 57.895 0.00 0.00 45.41 3.18
1236 1303 2.034066 CCGCCCTGTGTGGTGAAT 59.966 61.111 0.00 0.00 39.95 2.57
1237 1304 1.603455 CCGCCCTGTGTGGTGAATT 60.603 57.895 0.00 0.00 39.95 2.17
1238 1305 1.178534 CCGCCCTGTGTGGTGAATTT 61.179 55.000 0.00 0.00 39.95 1.82
1239 1306 0.673437 CGCCCTGTGTGGTGAATTTT 59.327 50.000 0.00 0.00 38.18 1.82
1240 1307 1.602668 CGCCCTGTGTGGTGAATTTTG 60.603 52.381 0.00 0.00 38.18 2.44
1241 1308 1.412343 GCCCTGTGTGGTGAATTTTGT 59.588 47.619 0.00 0.00 0.00 2.83
1242 1309 2.625790 GCCCTGTGTGGTGAATTTTGTA 59.374 45.455 0.00 0.00 0.00 2.41
1243 1310 3.258123 GCCCTGTGTGGTGAATTTTGTAT 59.742 43.478 0.00 0.00 0.00 2.29
1244 1311 4.618227 GCCCTGTGTGGTGAATTTTGTATC 60.618 45.833 0.00 0.00 0.00 2.24
1245 1312 4.379394 CCCTGTGTGGTGAATTTTGTATCG 60.379 45.833 0.00 0.00 0.00 2.92
1246 1313 4.454161 CCTGTGTGGTGAATTTTGTATCGA 59.546 41.667 0.00 0.00 0.00 3.59
1247 1314 5.049060 CCTGTGTGGTGAATTTTGTATCGAA 60.049 40.000 0.00 0.00 0.00 3.71
1248 1315 6.349280 CCTGTGTGGTGAATTTTGTATCGAAT 60.349 38.462 0.00 0.00 0.00 3.34
1249 1316 6.377780 TGTGTGGTGAATTTTGTATCGAATG 58.622 36.000 0.00 0.00 0.00 2.67
1250 1317 6.205658 TGTGTGGTGAATTTTGTATCGAATGA 59.794 34.615 0.00 0.00 0.00 2.57
1251 1318 7.094420 TGTGTGGTGAATTTTGTATCGAATGAT 60.094 33.333 0.00 0.00 38.67 2.45
1252 1319 7.754924 GTGTGGTGAATTTTGTATCGAATGATT 59.245 33.333 0.00 0.00 35.99 2.57
1253 1320 7.754475 TGTGGTGAATTTTGTATCGAATGATTG 59.246 33.333 0.00 0.00 35.99 2.67
1254 1321 7.754924 GTGGTGAATTTTGTATCGAATGATTGT 59.245 33.333 0.00 0.00 35.99 2.71
1255 1322 8.951243 TGGTGAATTTTGTATCGAATGATTGTA 58.049 29.630 0.00 0.00 35.99 2.41
1256 1323 9.781834 GGTGAATTTTGTATCGAATGATTGTAA 57.218 29.630 0.00 0.00 35.99 2.41
1265 1332 9.093970 TGTATCGAATGATTGTAAGTTTACTGG 57.906 33.333 0.00 0.00 35.99 4.00
1266 1333 9.095065 GTATCGAATGATTGTAAGTTTACTGGT 57.905 33.333 0.00 0.00 35.99 4.00
1267 1334 7.972832 TCGAATGATTGTAAGTTTACTGGTT 57.027 32.000 3.91 0.00 34.77 3.67
1268 1335 7.802738 TCGAATGATTGTAAGTTTACTGGTTG 58.197 34.615 3.91 0.00 34.77 3.77
1269 1336 7.658167 TCGAATGATTGTAAGTTTACTGGTTGA 59.342 33.333 3.91 0.00 34.77 3.18
1270 1337 8.450964 CGAATGATTGTAAGTTTACTGGTTGAT 58.549 33.333 3.91 0.00 34.77 2.57
1330 1397 2.238395 AGAGAAAAGAGGATGCCCTGTC 59.762 50.000 0.00 0.00 44.53 3.51
1331 1398 1.065854 AGAAAAGAGGATGCCCTGTCG 60.066 52.381 0.00 0.00 44.53 4.35
1334 1401 0.616111 AAGAGGATGCCCTGTCGACT 60.616 55.000 17.92 0.00 44.53 4.18
1335 1402 1.142748 GAGGATGCCCTGTCGACTG 59.857 63.158 17.92 16.32 44.53 3.51
1337 1404 2.512515 GATGCCCTGTCGACTGCC 60.513 66.667 17.92 10.23 0.00 4.85
1338 1405 3.005539 ATGCCCTGTCGACTGCCT 61.006 61.111 17.92 7.14 0.00 4.75
1339 1406 2.914777 GATGCCCTGTCGACTGCCTC 62.915 65.000 17.92 14.26 0.00 4.70
1340 1407 4.459089 GCCCTGTCGACTGCCTCC 62.459 72.222 17.92 1.18 0.00 4.30
1341 1408 3.775654 CCCTGTCGACTGCCTCCC 61.776 72.222 17.92 0.00 0.00 4.30
1374 1465 1.906574 TGTAGTCAAGGTAGGCCCAAG 59.093 52.381 0.00 0.00 34.66 3.61
1375 1466 0.909623 TAGTCAAGGTAGGCCCAAGC 59.090 55.000 0.00 0.00 34.66 4.01
1381 1472 1.078143 GGTAGGCCCAAGCAGTCAG 60.078 63.158 0.00 0.00 42.56 3.51
1419 1510 1.822186 AAAACGCCGAACCAGTGCT 60.822 52.632 0.00 0.00 0.00 4.40
1426 1517 0.241749 CCGAACCAGTGCTACGTGTA 59.758 55.000 0.00 0.00 0.00 2.90
1427 1518 1.135199 CCGAACCAGTGCTACGTGTAT 60.135 52.381 0.00 0.00 0.00 2.29
1428 1519 1.917955 CGAACCAGTGCTACGTGTATG 59.082 52.381 0.00 0.00 0.00 2.39
1429 1520 2.670229 CGAACCAGTGCTACGTGTATGT 60.670 50.000 0.00 0.00 0.00 2.29
1430 1521 2.363788 ACCAGTGCTACGTGTATGTG 57.636 50.000 0.00 0.00 0.00 3.21
1447 1538 2.499197 TGTGCATACGAGCTCCAAAAA 58.501 42.857 8.47 0.00 34.99 1.94
1460 1551 3.120580 GCTCCAAAAATGATGGTTTTGCG 60.121 43.478 4.48 0.44 42.20 4.85
1462 1553 4.054671 TCCAAAAATGATGGTTTTGCGTC 58.945 39.130 4.48 0.00 42.20 5.19
1478 1569 4.271590 TGCGTCGTTTTAATCATGGATG 57.728 40.909 0.00 0.00 0.00 3.51
1479 1570 3.935828 TGCGTCGTTTTAATCATGGATGA 59.064 39.130 0.00 0.00 41.70 2.92
1486 1577 9.477484 GTCGTTTTAATCATGGATGATAGTACT 57.523 33.333 0.00 0.00 46.22 2.73
1503 1594 7.390996 TGATAGTACTATGTGTTAGCCTAGCTC 59.609 40.741 20.13 1.51 40.44 4.09
1508 1599 3.053831 TGTGTTAGCCTAGCTCCAAAC 57.946 47.619 0.00 0.00 40.44 2.93
1525 1616 1.093159 AACGTGGTGGTTTTGCGTAA 58.907 45.000 0.00 0.00 35.22 3.18
1529 1620 3.314635 ACGTGGTGGTTTTGCGTAATTTA 59.685 39.130 0.00 0.00 33.85 1.40
1540 1631 2.745281 TGCGTAATTTACTTCACCTGCC 59.255 45.455 5.11 0.00 0.00 4.85
1545 1636 0.887387 TTTACTTCACCTGCCACGCC 60.887 55.000 0.00 0.00 0.00 5.68
1609 2138 9.244799 TGTTATCGCATAAGTACAAAGTATGAG 57.755 33.333 0.00 0.12 0.00 2.90
1629 2158 1.218316 GGGACGCCCTAGTCAAGTG 59.782 63.158 7.58 0.00 42.62 3.16
1631 2160 0.606604 GGACGCCCTAGTCAAGTGAA 59.393 55.000 0.00 0.00 42.62 3.18
1646 2280 4.513318 TCAAGTGAACGTCAATGCATACAA 59.487 37.500 0.00 0.00 0.00 2.41
1666 2300 8.956426 CATACAATTTTCCTACACAACCACTAT 58.044 33.333 0.00 0.00 0.00 2.12
1727 2361 5.077134 AGATTTAAATTTGGAGCAGGCAC 57.923 39.130 1.43 0.00 0.00 5.01
1733 2367 2.296945 TTTGGAGCAGGCACCAAGGT 62.297 55.000 19.73 0.00 44.83 3.50
1734 2368 2.360475 GGAGCAGGCACCAAGGTC 60.360 66.667 2.72 3.57 0.00 3.85
1735 2369 2.753029 GAGCAGGCACCAAGGTCT 59.247 61.111 0.00 0.00 0.00 3.85
1736 2370 1.673665 GAGCAGGCACCAAGGTCTG 60.674 63.158 4.12 4.12 0.00 3.51
1776 2410 2.826702 GAGGGGTGGACGTTGTGT 59.173 61.111 0.00 0.00 0.00 3.72
1826 2997 1.762957 AGGTACATCCTGCGCAAGTAT 59.237 47.619 13.05 1.78 46.19 2.12
1838 3009 1.366366 CAAGTATAGGACGCCGGGG 59.634 63.158 18.33 18.33 0.00 5.73
1910 3081 2.863346 CGTGTGGACGGAGGTGGAA 61.863 63.158 0.00 0.00 42.18 3.53
1913 3084 3.691342 TGGACGGAGGTGGAAGCG 61.691 66.667 0.00 0.00 40.95 4.68
2019 3190 3.134792 TCGACGAGAGCCTGGAGC 61.135 66.667 0.00 0.00 44.25 4.70
2207 3378 1.690633 GGAGGACCTCATGGCCAGA 60.691 63.158 23.06 8.18 36.63 3.86
2210 3381 1.997874 GGACCTCATGGCCAGACCT 60.998 63.158 13.05 0.00 40.22 3.85
2262 3433 3.679980 CACCAAGTTCTAGTTCCATCACG 59.320 47.826 0.00 0.00 0.00 4.35
2370 3609 7.817478 AGGTTTTGTTTTGGTAAACTTCTTCTG 59.183 33.333 0.00 0.00 43.25 3.02
2467 3712 3.894427 AGAGACTAGATCATTGATGGCGT 59.106 43.478 3.32 0.00 0.00 5.68
2515 3760 9.703892 TGTACAATGAAATGGTAGAAATTTTGG 57.296 29.630 0.00 0.00 32.19 3.28
2646 3937 9.461312 AAAGCAAGGTCACATATAAATTGACTA 57.539 29.630 10.08 0.00 39.72 2.59
2832 4131 2.224744 TGCACCTGGCTATTTCTTGTGA 60.225 45.455 0.00 0.00 45.15 3.58
2937 4236 8.361139 ACTCCCTTCATCTTATAATGTAAGACG 58.639 37.037 1.55 0.00 36.51 4.18
2938 4237 8.246430 TCCCTTCATCTTATAATGTAAGACGT 57.754 34.615 1.55 0.00 36.51 4.34
2939 4238 8.701895 TCCCTTCATCTTATAATGTAAGACGTT 58.298 33.333 1.55 0.00 36.51 3.99
2940 4239 9.326413 CCCTTCATCTTATAATGTAAGACGTTT 57.674 33.333 1.55 0.00 36.51 3.60
2966 4265 8.601845 TTTGACACTATATTCATTATGGGACG 57.398 34.615 0.00 0.00 0.00 4.79
2967 4266 7.533289 TGACACTATATTCATTATGGGACGA 57.467 36.000 0.00 0.00 0.00 4.20
2968 4267 7.958088 TGACACTATATTCATTATGGGACGAA 58.042 34.615 0.00 0.00 0.00 3.85
2969 4268 8.088365 TGACACTATATTCATTATGGGACGAAG 58.912 37.037 0.00 0.00 0.00 3.79
2970 4269 7.386851 ACACTATATTCATTATGGGACGAAGG 58.613 38.462 0.00 0.00 0.00 3.46
2971 4270 6.818644 CACTATATTCATTATGGGACGAAGGG 59.181 42.308 0.00 0.00 0.00 3.95
2972 4271 6.729100 ACTATATTCATTATGGGACGAAGGGA 59.271 38.462 0.00 0.00 0.00 4.20
2973 4272 3.838244 TTCATTATGGGACGAAGGGAG 57.162 47.619 0.00 0.00 0.00 4.30
2974 4273 2.759355 TCATTATGGGACGAAGGGAGT 58.241 47.619 0.00 0.00 0.00 3.85
2975 4274 3.918566 TCATTATGGGACGAAGGGAGTA 58.081 45.455 0.00 0.00 0.00 2.59
2976 4275 3.640029 TCATTATGGGACGAAGGGAGTAC 59.360 47.826 0.00 0.00 0.00 2.73
2990 4289 2.158755 GGGAGTACCATACAAGCAGCAT 60.159 50.000 0.00 0.00 39.85 3.79
3018 4317 9.520515 GGGGATATGTTGTAATCATATTGTTCT 57.479 33.333 0.00 0.00 38.22 3.01
3060 4359 2.071778 AAGAGCAACCAGGCTGAAAA 57.928 45.000 17.94 0.00 45.99 2.29
3076 4375 9.956720 CAGGCTGAAAAATATATGTAAGAAAGG 57.043 33.333 9.42 0.00 0.00 3.11
3077 4376 9.136323 AGGCTGAAAAATATATGTAAGAAAGGG 57.864 33.333 0.00 0.00 0.00 3.95
3078 4377 9.131791 GGCTGAAAAATATATGTAAGAAAGGGA 57.868 33.333 0.00 0.00 0.00 4.20
3079 4378 9.952188 GCTGAAAAATATATGTAAGAAAGGGAC 57.048 33.333 0.00 0.00 0.00 4.46
3083 4382 8.996651 AAAATATATGTAAGAAAGGGACTGGG 57.003 34.615 0.00 0.00 40.86 4.45
3084 4383 7.947782 AATATATGTAAGAAAGGGACTGGGA 57.052 36.000 0.00 0.00 40.86 4.37
3085 4384 8.525729 AATATATGTAAGAAAGGGACTGGGAT 57.474 34.615 0.00 0.00 40.86 3.85
3086 4385 4.779993 ATGTAAGAAAGGGACTGGGATC 57.220 45.455 0.00 0.00 40.86 3.36
3087 4386 3.526899 TGTAAGAAAGGGACTGGGATCA 58.473 45.455 0.00 0.00 40.86 2.92
3088 4387 3.519510 TGTAAGAAAGGGACTGGGATCAG 59.480 47.826 0.00 0.00 46.10 2.90
3089 4388 1.589414 AGAAAGGGACTGGGATCAGG 58.411 55.000 0.00 0.00 44.99 3.86
3090 4389 1.203492 AGAAAGGGACTGGGATCAGGT 60.203 52.381 0.00 0.00 44.99 4.00
3091 4390 0.995024 AAAGGGACTGGGATCAGGTG 59.005 55.000 0.00 0.00 44.99 4.00
3092 4391 0.119155 AAGGGACTGGGATCAGGTGA 59.881 55.000 0.00 0.00 44.99 4.02
3093 4392 0.618968 AGGGACTGGGATCAGGTGAC 60.619 60.000 0.00 0.00 44.99 3.67
3094 4393 0.618968 GGGACTGGGATCAGGTGACT 60.619 60.000 0.00 0.00 44.99 3.41
3095 4394 1.280457 GGACTGGGATCAGGTGACTT 58.720 55.000 0.00 0.00 44.99 3.01
3096 4395 1.065854 GGACTGGGATCAGGTGACTTG 60.066 57.143 0.00 0.00 44.99 3.16
3097 4396 0.326264 ACTGGGATCAGGTGACTTGC 59.674 55.000 0.00 0.00 44.99 4.01
3098 4397 0.393537 CTGGGATCAGGTGACTTGCC 60.394 60.000 0.00 0.00 40.21 4.52
3099 4398 1.077429 GGGATCAGGTGACTTGCCC 60.077 63.158 0.00 0.00 40.21 5.36
3100 4399 1.685224 GGATCAGGTGACTTGCCCA 59.315 57.895 0.00 0.00 40.21 5.36
3101 4400 0.678048 GGATCAGGTGACTTGCCCAC 60.678 60.000 0.00 0.00 40.21 4.61
3102 4401 0.326264 GATCAGGTGACTTGCCCACT 59.674 55.000 0.00 0.00 40.21 4.00
3103 4402 0.037303 ATCAGGTGACTTGCCCACTG 59.963 55.000 0.00 0.00 40.21 3.66
3104 4403 1.601759 CAGGTGACTTGCCCACTGG 60.602 63.158 0.00 0.00 40.21 4.00
3120 4419 2.356553 GGCAGTCACGCCGTAACA 60.357 61.111 0.00 0.00 43.52 2.41
3121 4420 1.740296 GGCAGTCACGCCGTAACAT 60.740 57.895 0.00 0.00 43.52 2.71
3122 4421 1.419922 GCAGTCACGCCGTAACATG 59.580 57.895 0.00 0.00 0.00 3.21
3123 4422 1.419922 CAGTCACGCCGTAACATGC 59.580 57.895 0.00 0.00 0.00 4.06
3131 4430 3.282557 CCGTAACATGCGGCTATCA 57.717 52.632 0.00 0.00 42.82 2.15
3132 4431 1.577468 CCGTAACATGCGGCTATCAA 58.423 50.000 0.00 0.00 42.82 2.57
3133 4432 2.143122 CCGTAACATGCGGCTATCAAT 58.857 47.619 0.00 0.00 42.82 2.57
3134 4433 2.157668 CCGTAACATGCGGCTATCAATC 59.842 50.000 0.00 0.00 42.82 2.67
3135 4434 2.157668 CGTAACATGCGGCTATCAATCC 59.842 50.000 0.00 0.00 0.00 3.01
3136 4435 2.346766 AACATGCGGCTATCAATCCA 57.653 45.000 0.00 0.00 0.00 3.41
3137 4436 2.346766 ACATGCGGCTATCAATCCAA 57.653 45.000 0.00 0.00 0.00 3.53
3138 4437 1.949525 ACATGCGGCTATCAATCCAAC 59.050 47.619 0.00 0.00 0.00 3.77
3139 4438 1.069703 CATGCGGCTATCAATCCAACG 60.070 52.381 0.00 0.00 0.00 4.10
3140 4439 0.107897 TGCGGCTATCAATCCAACGT 60.108 50.000 0.00 0.00 0.00 3.99
3141 4440 0.582005 GCGGCTATCAATCCAACGTC 59.418 55.000 0.00 0.00 0.00 4.34
3142 4441 1.217882 CGGCTATCAATCCAACGTCC 58.782 55.000 0.00 0.00 0.00 4.79
3143 4442 1.472552 CGGCTATCAATCCAACGTCCA 60.473 52.381 0.00 0.00 0.00 4.02
3144 4443 2.806745 CGGCTATCAATCCAACGTCCAT 60.807 50.000 0.00 0.00 0.00 3.41
3145 4444 3.214328 GGCTATCAATCCAACGTCCATT 58.786 45.455 0.00 0.00 0.00 3.16
3146 4445 3.251004 GGCTATCAATCCAACGTCCATTC 59.749 47.826 0.00 0.00 0.00 2.67
3147 4446 3.876914 GCTATCAATCCAACGTCCATTCA 59.123 43.478 0.00 0.00 0.00 2.57
3148 4447 4.335315 GCTATCAATCCAACGTCCATTCAA 59.665 41.667 0.00 0.00 0.00 2.69
3149 4448 5.009010 GCTATCAATCCAACGTCCATTCAAT 59.991 40.000 0.00 0.00 0.00 2.57
3150 4449 6.204688 GCTATCAATCCAACGTCCATTCAATA 59.795 38.462 0.00 0.00 0.00 1.90
3151 4450 7.094634 GCTATCAATCCAACGTCCATTCAATAT 60.095 37.037 0.00 0.00 0.00 1.28
3152 4451 6.618287 TCAATCCAACGTCCATTCAATATC 57.382 37.500 0.00 0.00 0.00 1.63
3153 4452 5.530915 TCAATCCAACGTCCATTCAATATCC 59.469 40.000 0.00 0.00 0.00 2.59
3154 4453 4.495690 TCCAACGTCCATTCAATATCCA 57.504 40.909 0.00 0.00 0.00 3.41
3155 4454 4.849518 TCCAACGTCCATTCAATATCCAA 58.150 39.130 0.00 0.00 0.00 3.53
3156 4455 5.445069 TCCAACGTCCATTCAATATCCAAT 58.555 37.500 0.00 0.00 0.00 3.16
3157 4456 5.299028 TCCAACGTCCATTCAATATCCAATG 59.701 40.000 0.00 1.22 0.00 2.82
3158 4457 5.299028 CCAACGTCCATTCAATATCCAATGA 59.701 40.000 7.77 0.00 32.56 2.57
3159 4458 6.183360 CCAACGTCCATTCAATATCCAATGAA 60.183 38.462 7.77 0.21 39.66 2.57
3160 4459 7.257003 CAACGTCCATTCAATATCCAATGAAA 58.743 34.615 7.77 0.00 38.88 2.69
3161 4460 7.031226 ACGTCCATTCAATATCCAATGAAAG 57.969 36.000 7.77 0.00 38.88 2.62
3162 4461 6.039717 ACGTCCATTCAATATCCAATGAAAGG 59.960 38.462 7.77 5.75 42.75 3.11
3163 4462 6.515531 CGTCCATTCAATATCCAATGAAAGGG 60.516 42.308 9.17 6.59 42.06 3.95
3164 4463 6.550854 GTCCATTCAATATCCAATGAAAGGGA 59.449 38.462 9.17 8.38 42.06 4.20
3165 4464 7.234166 GTCCATTCAATATCCAATGAAAGGGAT 59.766 37.037 9.17 0.00 42.06 3.85
3166 4465 7.790798 TCCATTCAATATCCAATGAAAGGGATT 59.209 33.333 9.17 0.00 42.06 3.01
3167 4466 7.876068 CCATTCAATATCCAATGAAAGGGATTG 59.124 37.037 0.00 0.00 41.04 2.67
3168 4467 8.644216 CATTCAATATCCAATGAAAGGGATTGA 58.356 33.333 0.00 0.00 41.04 2.57
3169 4468 8.786710 TTCAATATCCAATGAAAGGGATTGAT 57.213 30.769 0.00 0.00 41.04 2.57
3170 4469 8.413309 TCAATATCCAATGAAAGGGATTGATC 57.587 34.615 0.00 0.00 41.04 2.92
3171 4470 7.452501 TCAATATCCAATGAAAGGGATTGATCC 59.547 37.037 1.21 1.21 41.04 3.36
3184 4483 3.317430 GGATTGATCCATGAGAAACCAGC 59.683 47.826 5.14 0.00 46.38 4.85
3185 4484 2.425143 TGATCCATGAGAAACCAGCC 57.575 50.000 0.00 0.00 0.00 4.85
3186 4485 1.634973 TGATCCATGAGAAACCAGCCA 59.365 47.619 0.00 0.00 0.00 4.75
3187 4486 2.041485 TGATCCATGAGAAACCAGCCAA 59.959 45.455 0.00 0.00 0.00 4.52
3188 4487 1.909700 TCCATGAGAAACCAGCCAAC 58.090 50.000 0.00 0.00 0.00 3.77
3189 4488 1.144708 TCCATGAGAAACCAGCCAACA 59.855 47.619 0.00 0.00 0.00 3.33
3190 4489 1.542915 CCATGAGAAACCAGCCAACAG 59.457 52.381 0.00 0.00 0.00 3.16
3191 4490 2.233271 CATGAGAAACCAGCCAACAGT 58.767 47.619 0.00 0.00 0.00 3.55
3192 4491 2.435372 TGAGAAACCAGCCAACAGTT 57.565 45.000 0.00 0.00 0.00 3.16
3193 4492 2.023673 TGAGAAACCAGCCAACAGTTG 58.976 47.619 6.28 6.28 0.00 3.16
3205 4504 4.707210 CCAACAGTTGGCAATTTTTACG 57.293 40.909 19.68 0.00 45.17 3.18
3206 4505 3.059935 CCAACAGTTGGCAATTTTTACGC 60.060 43.478 19.68 0.00 45.17 4.42
3207 4506 2.389998 ACAGTTGGCAATTTTTACGCG 58.610 42.857 3.53 3.53 0.00 6.01
3208 4507 1.124116 CAGTTGGCAATTTTTACGCGC 59.876 47.619 5.73 0.00 0.00 6.86
3209 4508 1.132588 GTTGGCAATTTTTACGCGCA 58.867 45.000 5.73 0.00 0.00 6.09
3210 4509 1.132588 TTGGCAATTTTTACGCGCAC 58.867 45.000 5.73 0.00 0.00 5.34
3211 4510 0.030773 TGGCAATTTTTACGCGCACA 59.969 45.000 5.73 0.00 0.00 4.57
3212 4511 1.132588 GGCAATTTTTACGCGCACAA 58.867 45.000 5.73 0.00 0.00 3.33
3213 4512 1.724082 GGCAATTTTTACGCGCACAAT 59.276 42.857 5.73 0.00 0.00 2.71
3214 4513 2.156697 GGCAATTTTTACGCGCACAATT 59.843 40.909 5.73 3.00 0.00 2.32
3215 4514 3.144762 GCAATTTTTACGCGCACAATTG 58.855 40.909 20.67 20.67 37.72 2.32
3216 4515 3.362499 GCAATTTTTACGCGCACAATTGT 60.362 39.130 23.38 4.92 37.23 2.71
3217 4516 4.143514 GCAATTTTTACGCGCACAATTGTA 60.144 37.500 23.38 0.00 37.23 2.41
3218 4517 5.610552 GCAATTTTTACGCGCACAATTGTAA 60.611 36.000 23.38 3.52 37.23 2.41
3219 4518 6.521036 CAATTTTTACGCGCACAATTGTAAT 58.479 32.000 11.53 1.23 32.48 1.89
3220 4519 6.698359 ATTTTTACGCGCACAATTGTAATT 57.302 29.167 11.53 0.00 0.00 1.40
3221 4520 6.512177 TTTTTACGCGCACAATTGTAATTT 57.488 29.167 11.53 0.00 0.00 1.82
3222 4521 6.512177 TTTTACGCGCACAATTGTAATTTT 57.488 29.167 11.53 0.00 0.00 1.82
3223 4522 7.618964 TTTTACGCGCACAATTGTAATTTTA 57.381 28.000 11.53 0.00 0.00 1.52
3224 4523 6.599637 TTACGCGCACAATTGTAATTTTAC 57.400 33.333 11.53 0.00 0.00 2.01
3225 4524 3.600362 ACGCGCACAATTGTAATTTTACG 59.400 39.130 11.53 10.55 36.45 3.18
3226 4525 3.600362 CGCGCACAATTGTAATTTTACGT 59.400 39.130 11.53 0.00 36.45 3.57
3227 4526 4.486380 CGCGCACAATTGTAATTTTACGTG 60.486 41.667 11.53 9.15 36.45 4.49
3228 4527 4.380382 GCGCACAATTGTAATTTTACGTGT 59.620 37.500 11.53 4.38 36.45 4.49
3229 4528 5.564504 GCGCACAATTGTAATTTTACGTGTA 59.435 36.000 11.53 0.00 36.45 2.90
3230 4529 6.450154 GCGCACAATTGTAATTTTACGTGTAC 60.450 38.462 11.53 0.00 36.45 2.90
3231 4530 6.574093 CGCACAATTGTAATTTTACGTGTACA 59.426 34.615 11.53 0.00 36.45 2.90
3232 4531 7.269511 CGCACAATTGTAATTTTACGTGTACAT 59.730 33.333 11.53 0.00 36.45 2.29
3233 4532 8.362304 GCACAATTGTAATTTTACGTGTACATG 58.638 33.333 11.53 13.64 36.45 3.21
3234 4533 8.362304 CACAATTGTAATTTTACGTGTACATGC 58.638 33.333 11.53 0.00 36.45 4.06
3235 4534 8.076781 ACAATTGTAATTTTACGTGTACATGCA 58.923 29.630 15.12 0.00 36.45 3.96
3236 4535 8.906693 CAATTGTAATTTTACGTGTACATGCAA 58.093 29.630 15.12 5.78 36.45 4.08
3237 4536 7.839438 TTGTAATTTTACGTGTACATGCAAC 57.161 32.000 15.12 0.00 36.45 4.17
3238 4537 6.956047 TGTAATTTTACGTGTACATGCAACA 58.044 32.000 15.12 2.15 36.45 3.33
3239 4538 7.415229 TGTAATTTTACGTGTACATGCAACAA 58.585 30.769 15.12 6.56 36.45 2.83
3240 4539 6.984740 AATTTTACGTGTACATGCAACAAG 57.015 33.333 15.12 11.46 33.31 3.16
3241 4540 3.529634 TTACGTGTACATGCAACAAGC 57.470 42.857 15.12 0.00 45.96 4.01
3242 4541 1.593196 ACGTGTACATGCAACAAGCT 58.407 45.000 15.12 0.00 45.94 3.74
3243 4542 2.761559 ACGTGTACATGCAACAAGCTA 58.238 42.857 15.12 0.00 45.94 3.32
3244 4543 2.478894 ACGTGTACATGCAACAAGCTAC 59.521 45.455 15.12 0.00 45.94 3.58
3245 4544 2.736721 CGTGTACATGCAACAAGCTACT 59.263 45.455 1.29 0.00 45.94 2.57
3246 4545 3.423515 CGTGTACATGCAACAAGCTACTG 60.424 47.826 1.29 0.00 45.94 2.74
3247 4546 3.498397 GTGTACATGCAACAAGCTACTGT 59.502 43.478 0.00 0.00 45.94 3.55
3248 4547 4.688879 GTGTACATGCAACAAGCTACTGTA 59.311 41.667 0.00 0.00 45.94 2.74
3249 4548 5.351465 GTGTACATGCAACAAGCTACTGTAT 59.649 40.000 0.00 0.00 45.94 2.29
3250 4549 4.952262 ACATGCAACAAGCTACTGTATG 57.048 40.909 14.85 14.85 45.94 2.39
3251 4550 3.127548 ACATGCAACAAGCTACTGTATGC 59.872 43.478 15.80 14.83 45.94 3.14
3252 4551 2.777094 TGCAACAAGCTACTGTATGCA 58.223 42.857 17.13 17.13 45.94 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
144 160 6.256053 AGGGATTCTTGTGTGTAAATCCAAT 58.744 36.000 13.34 1.15 45.89 3.16
298 319 8.668353 CATTATTTTGCACATAGATACGGCTAT 58.332 33.333 0.00 0.00 0.00 2.97
432 453 6.634805 TCTTAAGTCTTAGCTGAACCATGAG 58.365 40.000 1.63 0.00 0.00 2.90
507 551 5.821470 AGCATTGATTTCTGAGTAGATGTGG 59.179 40.000 0.00 0.00 31.81 4.17
511 555 7.737869 AGATGAGCATTGATTTCTGAGTAGAT 58.262 34.615 0.00 0.00 31.81 1.98
629 678 0.244721 CAAGGCTGTTTTGGCTAGGC 59.755 55.000 9.85 9.85 42.20 3.93
637 686 1.683385 GAACAGGAGCAAGGCTGTTTT 59.317 47.619 0.00 0.00 39.88 2.43
832 892 1.134098 CCAAGCCCAACCGTATCATCT 60.134 52.381 0.00 0.00 0.00 2.90
859 920 1.299089 GGAGCACAACACGCCAAAC 60.299 57.895 0.00 0.00 0.00 2.93
860 921 1.453015 AGGAGCACAACACGCCAAA 60.453 52.632 0.00 0.00 0.00 3.28
881 942 3.748370 ACCACCACAGGTCCACAA 58.252 55.556 0.00 0.00 37.28 3.33
888 949 4.742201 CTCGGCGACCACCACAGG 62.742 72.222 4.99 0.00 0.00 4.00
963 1030 4.155733 CCTCGCGCCACCACCATA 62.156 66.667 0.00 0.00 0.00 2.74
1020 1087 4.426313 TCGGGCTCTCGGCTCTCA 62.426 66.667 0.00 0.00 39.79 3.27
1066 1133 4.074970 GCTTCCTTCTTCAGATCAACCAA 58.925 43.478 0.00 0.00 0.00 3.67
1067 1134 3.328931 AGCTTCCTTCTTCAGATCAACCA 59.671 43.478 0.00 0.00 0.00 3.67
1068 1135 3.938334 GAGCTTCCTTCTTCAGATCAACC 59.062 47.826 0.00 0.00 0.00 3.77
1069 1136 4.831107 AGAGCTTCCTTCTTCAGATCAAC 58.169 43.478 0.00 0.00 0.00 3.18
1070 1137 5.495926 AAGAGCTTCCTTCTTCAGATCAA 57.504 39.130 0.00 0.00 29.05 2.57
1071 1138 5.395103 GCTAAGAGCTTCCTTCTTCAGATCA 60.395 44.000 0.00 0.00 38.45 2.92
1072 1139 5.049828 GCTAAGAGCTTCCTTCTTCAGATC 58.950 45.833 0.00 0.00 38.45 2.75
1073 1140 5.022282 GCTAAGAGCTTCCTTCTTCAGAT 57.978 43.478 0.00 0.00 38.45 2.90
1074 1141 4.464069 GCTAAGAGCTTCCTTCTTCAGA 57.536 45.455 0.00 0.00 38.45 3.27
1101 1168 9.801873 GCCAATTGAAAGTTATTAATCAGCTTA 57.198 29.630 7.12 0.00 0.00 3.09
1102 1169 8.534496 AGCCAATTGAAAGTTATTAATCAGCTT 58.466 29.630 7.12 0.00 0.00 3.74
1103 1170 8.071177 AGCCAATTGAAAGTTATTAATCAGCT 57.929 30.769 7.12 0.00 0.00 4.24
1104 1171 9.801873 TTAGCCAATTGAAAGTTATTAATCAGC 57.198 29.630 7.12 0.00 0.00 4.26
1113 1180 8.879759 CGACTAATCTTAGCCAATTGAAAGTTA 58.120 33.333 7.12 7.94 34.09 2.24
1114 1181 7.148239 CCGACTAATCTTAGCCAATTGAAAGTT 60.148 37.037 7.12 7.35 34.09 2.66
1115 1182 6.316390 CCGACTAATCTTAGCCAATTGAAAGT 59.684 38.462 7.12 0.00 34.09 2.66
1116 1183 6.316390 ACCGACTAATCTTAGCCAATTGAAAG 59.684 38.462 7.12 7.79 34.09 2.62
1117 1184 6.177610 ACCGACTAATCTTAGCCAATTGAAA 58.822 36.000 7.12 0.00 34.09 2.69
1118 1185 5.741011 ACCGACTAATCTTAGCCAATTGAA 58.259 37.500 7.12 0.00 34.09 2.69
1119 1186 5.353394 ACCGACTAATCTTAGCCAATTGA 57.647 39.130 7.12 0.00 34.09 2.57
1120 1187 4.209288 CGACCGACTAATCTTAGCCAATTG 59.791 45.833 0.00 0.00 34.09 2.32
1121 1188 4.369182 CGACCGACTAATCTTAGCCAATT 58.631 43.478 0.00 0.00 34.09 2.32
1122 1189 3.243771 CCGACCGACTAATCTTAGCCAAT 60.244 47.826 0.00 0.00 34.09 3.16
1123 1190 2.100252 CCGACCGACTAATCTTAGCCAA 59.900 50.000 0.00 0.00 34.09 4.52
1124 1191 1.679680 CCGACCGACTAATCTTAGCCA 59.320 52.381 0.00 0.00 34.09 4.75
1125 1192 1.602416 GCCGACCGACTAATCTTAGCC 60.602 57.143 0.00 0.00 34.09 3.93
1126 1193 1.768510 GCCGACCGACTAATCTTAGC 58.231 55.000 0.00 0.00 34.09 3.09
1127 1194 1.600957 TCGCCGACCGACTAATCTTAG 59.399 52.381 0.00 0.00 41.89 2.18
1128 1195 1.667236 TCGCCGACCGACTAATCTTA 58.333 50.000 0.00 0.00 41.89 2.10
1129 1196 2.485677 TCGCCGACCGACTAATCTT 58.514 52.632 0.00 0.00 41.89 2.40
1130 1197 4.230603 TCGCCGACCGACTAATCT 57.769 55.556 0.00 0.00 41.89 2.40
1137 1204 3.687102 ACCACATTCGCCGACCGA 61.687 61.111 0.00 0.00 45.77 4.69
1138 1205 3.487202 CACCACATTCGCCGACCG 61.487 66.667 0.00 0.00 38.61 4.79
1139 1206 3.124921 CCACCACATTCGCCGACC 61.125 66.667 0.00 0.00 0.00 4.79
1140 1207 3.799755 GCCACCACATTCGCCGAC 61.800 66.667 0.00 0.00 0.00 4.79
1141 1208 3.950794 GAGCCACCACATTCGCCGA 62.951 63.158 0.00 0.00 0.00 5.54
1142 1209 3.499737 GAGCCACCACATTCGCCG 61.500 66.667 0.00 0.00 0.00 6.46
1143 1210 1.315257 AATGAGCCACCACATTCGCC 61.315 55.000 0.00 0.00 32.26 5.54
1144 1211 0.527565 AAATGAGCCACCACATTCGC 59.472 50.000 0.00 0.00 35.99 4.70
1145 1212 1.811965 TGAAATGAGCCACCACATTCG 59.188 47.619 0.00 0.00 35.99 3.34
1146 1213 4.498682 GCTATGAAATGAGCCACCACATTC 60.499 45.833 0.00 0.00 35.99 2.67
1147 1214 3.382546 GCTATGAAATGAGCCACCACATT 59.617 43.478 0.00 0.00 38.18 2.71
1148 1215 2.954318 GCTATGAAATGAGCCACCACAT 59.046 45.455 0.00 0.00 32.25 3.21
1149 1216 2.290832 TGCTATGAAATGAGCCACCACA 60.291 45.455 0.00 0.00 37.94 4.17
1150 1217 2.368439 TGCTATGAAATGAGCCACCAC 58.632 47.619 0.00 0.00 37.94 4.16
1151 1218 2.804986 TGCTATGAAATGAGCCACCA 57.195 45.000 0.00 0.00 37.94 4.17
1152 1219 3.445096 ACTTTGCTATGAAATGAGCCACC 59.555 43.478 0.00 0.00 37.94 4.61
1153 1220 4.708726 ACTTTGCTATGAAATGAGCCAC 57.291 40.909 0.00 0.00 37.94 5.01
1154 1221 5.726980 AAACTTTGCTATGAAATGAGCCA 57.273 34.783 0.00 0.00 37.94 4.75
1155 1222 6.856895 ACTAAACTTTGCTATGAAATGAGCC 58.143 36.000 0.00 0.00 37.94 4.70
1156 1223 8.748380 AAACTAAACTTTGCTATGAAATGAGC 57.252 30.769 0.00 0.00 39.25 4.26
1161 1228 9.862371 TTGTCAAAACTAAACTTTGCTATGAAA 57.138 25.926 0.00 0.00 34.43 2.69
1167 1234 9.899226 GATCTATTGTCAAAACTAAACTTTGCT 57.101 29.630 0.00 0.00 34.43 3.91
1168 1235 9.129209 GGATCTATTGTCAAAACTAAACTTTGC 57.871 33.333 0.00 0.00 34.43 3.68
1169 1236 9.329913 CGGATCTATTGTCAAAACTAAACTTTG 57.670 33.333 0.00 0.00 35.51 2.77
1170 1237 9.280174 TCGGATCTATTGTCAAAACTAAACTTT 57.720 29.630 0.00 0.00 0.00 2.66
1171 1238 8.842358 TCGGATCTATTGTCAAAACTAAACTT 57.158 30.769 0.00 0.00 0.00 2.66
1172 1239 8.883731 CATCGGATCTATTGTCAAAACTAAACT 58.116 33.333 0.00 0.00 0.00 2.66
1173 1240 8.122952 CCATCGGATCTATTGTCAAAACTAAAC 58.877 37.037 0.00 0.00 0.00 2.01
1174 1241 7.827236 ACCATCGGATCTATTGTCAAAACTAAA 59.173 33.333 0.00 0.00 0.00 1.85
1175 1242 7.335627 ACCATCGGATCTATTGTCAAAACTAA 58.664 34.615 0.00 0.00 0.00 2.24
1176 1243 6.884832 ACCATCGGATCTATTGTCAAAACTA 58.115 36.000 0.00 0.00 0.00 2.24
1177 1244 5.745227 ACCATCGGATCTATTGTCAAAACT 58.255 37.500 0.00 0.00 0.00 2.66
1178 1245 7.730364 ATACCATCGGATCTATTGTCAAAAC 57.270 36.000 0.00 0.00 0.00 2.43
1179 1246 8.210946 AGAATACCATCGGATCTATTGTCAAAA 58.789 33.333 0.00 0.00 0.00 2.44
1180 1247 7.735917 AGAATACCATCGGATCTATTGTCAAA 58.264 34.615 0.00 0.00 0.00 2.69
1181 1248 7.303182 AGAATACCATCGGATCTATTGTCAA 57.697 36.000 0.00 0.00 0.00 3.18
1182 1249 6.918067 AGAATACCATCGGATCTATTGTCA 57.082 37.500 0.00 0.00 0.00 3.58
1183 1250 9.877178 AATAAGAATACCATCGGATCTATTGTC 57.123 33.333 0.00 0.00 0.00 3.18
1196 1263 8.730680 GCGGAACATCATTAATAAGAATACCAT 58.269 33.333 0.00 0.00 0.00 3.55
1197 1264 7.174253 GGCGGAACATCATTAATAAGAATACCA 59.826 37.037 0.00 0.00 0.00 3.25
1198 1265 7.361799 GGGCGGAACATCATTAATAAGAATACC 60.362 40.741 0.00 0.00 0.00 2.73
1199 1266 7.390718 AGGGCGGAACATCATTAATAAGAATAC 59.609 37.037 0.00 0.00 0.00 1.89
1200 1267 7.390440 CAGGGCGGAACATCATTAATAAGAATA 59.610 37.037 0.00 0.00 0.00 1.75
1201 1268 6.207417 CAGGGCGGAACATCATTAATAAGAAT 59.793 38.462 0.00 0.00 0.00 2.40
1202 1269 5.530915 CAGGGCGGAACATCATTAATAAGAA 59.469 40.000 0.00 0.00 0.00 2.52
1203 1270 5.063204 CAGGGCGGAACATCATTAATAAGA 58.937 41.667 0.00 0.00 0.00 2.10
1204 1271 4.821805 ACAGGGCGGAACATCATTAATAAG 59.178 41.667 0.00 0.00 0.00 1.73
1205 1272 4.578516 CACAGGGCGGAACATCATTAATAA 59.421 41.667 0.00 0.00 0.00 1.40
1206 1273 4.133820 CACAGGGCGGAACATCATTAATA 58.866 43.478 0.00 0.00 0.00 0.98
1207 1274 2.951642 CACAGGGCGGAACATCATTAAT 59.048 45.455 0.00 0.00 0.00 1.40
1208 1275 2.290641 ACACAGGGCGGAACATCATTAA 60.291 45.455 0.00 0.00 0.00 1.40
1209 1276 1.280710 ACACAGGGCGGAACATCATTA 59.719 47.619 0.00 0.00 0.00 1.90
1210 1277 0.038166 ACACAGGGCGGAACATCATT 59.962 50.000 0.00 0.00 0.00 2.57
1211 1278 0.677731 CACACAGGGCGGAACATCAT 60.678 55.000 0.00 0.00 0.00 2.45
1212 1279 1.302431 CACACAGGGCGGAACATCA 60.302 57.895 0.00 0.00 0.00 3.07
1213 1280 2.040544 CCACACAGGGCGGAACATC 61.041 63.158 0.00 0.00 0.00 3.06
1214 1281 2.034066 CCACACAGGGCGGAACAT 59.966 61.111 0.00 0.00 0.00 2.71
1215 1282 3.484806 ACCACACAGGGCGGAACA 61.485 61.111 0.00 0.00 43.89 3.18
1216 1283 2.951475 TTCACCACACAGGGCGGAAC 62.951 60.000 0.00 0.00 43.89 3.62
1217 1284 2.063015 ATTCACCACACAGGGCGGAA 62.063 55.000 0.00 0.00 43.89 4.30
1218 1285 2.063015 AATTCACCACACAGGGCGGA 62.063 55.000 0.00 0.00 43.89 5.54
1219 1286 1.178534 AAATTCACCACACAGGGCGG 61.179 55.000 0.00 0.00 43.89 6.13
1220 1287 0.673437 AAAATTCACCACACAGGGCG 59.327 50.000 0.00 0.00 43.89 6.13
1221 1288 1.412343 ACAAAATTCACCACACAGGGC 59.588 47.619 0.00 0.00 43.89 5.19
1222 1289 4.379394 CGATACAAAATTCACCACACAGGG 60.379 45.833 0.00 0.00 43.89 4.45
1223 1290 4.454161 TCGATACAAAATTCACCACACAGG 59.546 41.667 0.00 0.00 45.67 4.00
1224 1291 5.605564 TCGATACAAAATTCACCACACAG 57.394 39.130 0.00 0.00 0.00 3.66
1225 1292 6.205658 TCATTCGATACAAAATTCACCACACA 59.794 34.615 0.00 0.00 0.00 3.72
1226 1293 6.607689 TCATTCGATACAAAATTCACCACAC 58.392 36.000 0.00 0.00 0.00 3.82
1227 1294 6.809630 TCATTCGATACAAAATTCACCACA 57.190 33.333 0.00 0.00 0.00 4.17
1228 1295 7.754924 ACAATCATTCGATACAAAATTCACCAC 59.245 33.333 0.00 0.00 0.00 4.16
1229 1296 7.825681 ACAATCATTCGATACAAAATTCACCA 58.174 30.769 0.00 0.00 0.00 4.17
1230 1297 9.781834 TTACAATCATTCGATACAAAATTCACC 57.218 29.630 0.00 0.00 0.00 4.02
1239 1306 9.093970 CCAGTAAACTTACAATCATTCGATACA 57.906 33.333 2.63 0.00 36.12 2.29
1240 1307 9.095065 ACCAGTAAACTTACAATCATTCGATAC 57.905 33.333 2.63 0.00 36.12 2.24
1241 1308 9.661563 AACCAGTAAACTTACAATCATTCGATA 57.338 29.630 2.63 0.00 36.12 2.92
1242 1309 8.450964 CAACCAGTAAACTTACAATCATTCGAT 58.549 33.333 2.63 0.00 36.12 3.59
1243 1310 7.658167 TCAACCAGTAAACTTACAATCATTCGA 59.342 33.333 2.63 0.00 36.12 3.71
1244 1311 7.802738 TCAACCAGTAAACTTACAATCATTCG 58.197 34.615 2.63 0.00 36.12 3.34
1294 1361 8.642432 CCTCTTTTCTCTTACATTTCCCTTTTT 58.358 33.333 0.00 0.00 0.00 1.94
1298 1365 6.704056 TCCTCTTTTCTCTTACATTTCCCT 57.296 37.500 0.00 0.00 0.00 4.20
1301 1368 6.183360 GGGCATCCTCTTTTCTCTTACATTTC 60.183 42.308 0.00 0.00 0.00 2.17
1355 1446 1.407025 GCTTGGGCCTACCTTGACTAC 60.407 57.143 4.53 0.00 41.11 2.73
1359 1450 1.133809 ACTGCTTGGGCCTACCTTGA 61.134 55.000 4.53 0.00 41.11 3.02
1374 1465 5.064707 TCGGTTTAATAGCAATTCTGACTGC 59.935 40.000 3.31 3.31 38.91 4.40
1375 1466 6.662414 TCGGTTTAATAGCAATTCTGACTG 57.338 37.500 0.00 0.00 0.00 3.51
1419 1510 2.356695 AGCTCGTATGCACATACACGTA 59.643 45.455 18.25 2.94 42.82 3.57
1426 1517 2.401583 TTTGGAGCTCGTATGCACAT 57.598 45.000 7.83 0.00 34.99 3.21
1427 1518 2.177394 TTTTGGAGCTCGTATGCACA 57.823 45.000 7.83 0.00 34.99 4.57
1428 1519 3.126858 TCATTTTTGGAGCTCGTATGCAC 59.873 43.478 7.83 0.00 34.99 4.57
1429 1520 3.342719 TCATTTTTGGAGCTCGTATGCA 58.657 40.909 7.83 0.00 34.99 3.96
1430 1521 4.285292 CATCATTTTTGGAGCTCGTATGC 58.715 43.478 7.83 0.00 0.00 3.14
1447 1538 3.363341 AAAACGACGCAAAACCATCAT 57.637 38.095 0.00 0.00 0.00 2.45
1460 1551 9.477484 AGTACTATCATCCATGATTAAAACGAC 57.523 33.333 7.36 0.00 44.70 4.34
1478 1569 7.148205 GGAGCTAGGCTAACACATAGTACTATC 60.148 44.444 12.62 0.08 39.88 2.08
1479 1570 6.660094 GGAGCTAGGCTAACACATAGTACTAT 59.340 42.308 9.71 9.71 39.88 2.12
1486 1577 4.679639 CGTTTGGAGCTAGGCTAACACATA 60.680 45.833 0.00 0.00 39.88 2.29
1487 1578 3.610911 GTTTGGAGCTAGGCTAACACAT 58.389 45.455 0.00 0.00 39.88 3.21
1488 1579 2.611971 CGTTTGGAGCTAGGCTAACACA 60.612 50.000 0.00 0.00 39.88 3.72
1508 1599 2.409152 AATTACGCAAAACCACCACG 57.591 45.000 0.00 0.00 0.00 4.94
1525 1616 1.165270 GCGTGGCAGGTGAAGTAAAT 58.835 50.000 9.16 0.00 0.00 1.40
1529 1620 3.560251 AGGCGTGGCAGGTGAAGT 61.560 61.111 9.16 0.00 0.00 3.01
1545 1636 1.672356 AGCTTGCAACCGCCTACAG 60.672 57.895 7.03 0.00 37.32 2.74
1553 1644 0.319405 ATTGAAGCCAGCTTGCAACC 59.681 50.000 12.92 1.14 36.26 3.77
1557 1648 2.443887 TTTCATTGAAGCCAGCTTGC 57.556 45.000 10.13 0.46 36.26 4.01
1629 2158 6.092748 AGGAAAATTGTATGCATTGACGTTC 58.907 36.000 3.54 2.51 0.00 3.95
1631 2160 5.643379 AGGAAAATTGTATGCATTGACGT 57.357 34.783 3.54 0.00 0.00 4.34
1646 2280 5.944007 GTGGATAGTGGTTGTGTAGGAAAAT 59.056 40.000 0.00 0.00 0.00 1.82
1717 2351 2.360475 GACCTTGGTGCCTGCTCC 60.360 66.667 0.00 3.32 0.00 4.70
1733 2367 3.309296 ACTTTTCAGGTCTCTGTCCAGA 58.691 45.455 0.00 0.00 41.59 3.86
1734 2368 3.323403 AGACTTTTCAGGTCTCTGTCCAG 59.677 47.826 0.00 0.00 39.52 3.86
1735 2369 3.309296 AGACTTTTCAGGTCTCTGTCCA 58.691 45.455 0.00 0.00 39.52 4.02
1736 2370 4.311606 GAAGACTTTTCAGGTCTCTGTCC 58.688 47.826 0.00 0.00 42.39 4.02
1737 2371 3.984633 CGAAGACTTTTCAGGTCTCTGTC 59.015 47.826 0.00 0.00 42.39 3.51
1738 2372 3.637229 TCGAAGACTTTTCAGGTCTCTGT 59.363 43.478 0.00 0.00 42.39 3.41
1739 2373 4.233789 CTCGAAGACTTTTCAGGTCTCTG 58.766 47.826 0.00 0.00 42.39 3.35
1740 2374 3.257127 CCTCGAAGACTTTTCAGGTCTCT 59.743 47.826 0.00 0.00 42.39 3.10
1741 2375 3.580731 CCTCGAAGACTTTTCAGGTCTC 58.419 50.000 0.00 0.00 42.39 3.36
1742 2376 2.300437 CCCTCGAAGACTTTTCAGGTCT 59.700 50.000 7.08 0.00 44.73 3.85
1743 2377 2.613223 CCCCTCGAAGACTTTTCAGGTC 60.613 54.545 7.08 0.00 0.00 3.85
1744 2378 1.348036 CCCCTCGAAGACTTTTCAGGT 59.652 52.381 7.08 0.00 0.00 4.00
1776 2410 1.070786 GCGACTCTGTTGGTTGGGA 59.929 57.895 0.00 0.00 0.00 4.37
1777 2411 2.317609 CGCGACTCTGTTGGTTGGG 61.318 63.158 0.00 0.00 0.00 4.12
1780 2414 3.036084 CGCGCGACTCTGTTGGTT 61.036 61.111 28.94 0.00 0.00 3.67
1872 3043 1.682005 CCACCATTGTCGCCCCATT 60.682 57.895 0.00 0.00 0.00 3.16
1874 3045 3.253061 TCCACCATTGTCGCCCCA 61.253 61.111 0.00 0.00 0.00 4.96
1876 3047 3.124921 CGTCCACCATTGTCGCCC 61.125 66.667 0.00 0.00 0.00 6.13
1881 3052 0.534203 GTCCACACGTCCACCATTGT 60.534 55.000 0.00 0.00 0.00 2.71
1883 3054 1.301401 CGTCCACACGTCCACCATT 60.301 57.895 0.00 0.00 41.42 3.16
1910 3081 4.394712 GGGTGGTACTGCTGCGCT 62.395 66.667 9.73 0.00 0.00 5.92
1983 3154 2.027625 CGAACTTCTGGTCCGTGGC 61.028 63.158 0.00 0.00 0.00 5.01
1984 3155 0.666577 GACGAACTTCTGGTCCGTGG 60.667 60.000 0.00 0.00 33.32 4.94
1985 3156 1.002250 CGACGAACTTCTGGTCCGTG 61.002 60.000 0.00 0.00 33.32 4.94
2061 3232 2.904131 GGCCAGGTACCTGCTCTC 59.096 66.667 32.98 20.65 42.35 3.20
2210 3381 1.671742 GCAGACCCTCTTGACCGAA 59.328 57.895 0.00 0.00 0.00 4.30
2262 3433 3.425404 GACACACACACAATGACACAAC 58.575 45.455 0.00 0.00 0.00 3.32
2370 3609 1.103398 ACAACTCTGTGTGCTTGCCC 61.103 55.000 0.00 0.00 33.30 5.36
2439 3684 7.877097 GCCATCAATGATCTAGTCTCTTAACAT 59.123 37.037 0.00 0.00 0.00 2.71
2440 3685 7.212976 GCCATCAATGATCTAGTCTCTTAACA 58.787 38.462 0.00 0.00 0.00 2.41
2441 3686 6.364706 CGCCATCAATGATCTAGTCTCTTAAC 59.635 42.308 0.00 0.00 0.00 2.01
2442 3687 6.040955 ACGCCATCAATGATCTAGTCTCTTAA 59.959 38.462 0.00 0.00 0.00 1.85
2443 3688 5.536538 ACGCCATCAATGATCTAGTCTCTTA 59.463 40.000 0.00 0.00 0.00 2.10
2444 3689 4.343526 ACGCCATCAATGATCTAGTCTCTT 59.656 41.667 0.00 0.00 0.00 2.85
2445 3690 3.894427 ACGCCATCAATGATCTAGTCTCT 59.106 43.478 0.00 0.00 0.00 3.10
2446 3691 3.986572 CACGCCATCAATGATCTAGTCTC 59.013 47.826 0.00 0.00 0.00 3.36
2447 3692 3.801638 GCACGCCATCAATGATCTAGTCT 60.802 47.826 0.00 0.00 0.00 3.24
2448 3693 2.478134 GCACGCCATCAATGATCTAGTC 59.522 50.000 0.00 0.00 0.00 2.59
2475 3720 1.635844 TGTACAAATAGACAGGCGCG 58.364 50.000 0.00 0.00 0.00 6.86
2481 3726 9.952030 TCTACCATTTCATTGTACAAATAGACA 57.048 29.630 13.23 5.04 0.00 3.41
2522 3767 8.984764 CAAGTTCAATTATTTCATATGGCCATG 58.015 33.333 29.04 14.69 0.00 3.66
2599 3872 9.634163 TGCTTTTACCGAGTGTATGTATATATG 57.366 33.333 0.00 0.00 0.00 1.78
2725 4024 9.153721 GAAGATTTCATTTATGCACCATGAAAA 57.846 29.630 23.43 13.29 45.45 2.29
2832 4131 2.308570 TGTCCTATGAATGTGTGCCCTT 59.691 45.455 0.00 0.00 0.00 3.95
2913 4212 8.246430 ACGTCTTACATTATAAGATGAAGGGA 57.754 34.615 18.34 0.00 40.96 4.20
2914 4213 8.888579 AACGTCTTACATTATAAGATGAAGGG 57.111 34.615 18.34 1.77 40.96 3.95
2940 4239 9.051679 CGTCCCATAATGAATATAGTGTCAAAA 57.948 33.333 0.00 0.00 0.00 2.44
2941 4240 8.425703 TCGTCCCATAATGAATATAGTGTCAAA 58.574 33.333 0.00 0.00 0.00 2.69
2942 4241 7.958088 TCGTCCCATAATGAATATAGTGTCAA 58.042 34.615 0.00 0.00 0.00 3.18
2943 4242 7.533289 TCGTCCCATAATGAATATAGTGTCA 57.467 36.000 0.00 0.00 0.00 3.58
2944 4243 7.545965 CCTTCGTCCCATAATGAATATAGTGTC 59.454 40.741 0.00 0.00 0.00 3.67
2945 4244 7.386851 CCTTCGTCCCATAATGAATATAGTGT 58.613 38.462 0.00 0.00 0.00 3.55
2946 4245 6.818644 CCCTTCGTCCCATAATGAATATAGTG 59.181 42.308 0.00 0.00 0.00 2.74
2947 4246 6.729100 TCCCTTCGTCCCATAATGAATATAGT 59.271 38.462 0.00 0.00 0.00 2.12
2948 4247 7.093289 ACTCCCTTCGTCCCATAATGAATATAG 60.093 40.741 0.00 0.00 0.00 1.31
2949 4248 6.729100 ACTCCCTTCGTCCCATAATGAATATA 59.271 38.462 0.00 0.00 0.00 0.86
2950 4249 5.548056 ACTCCCTTCGTCCCATAATGAATAT 59.452 40.000 0.00 0.00 0.00 1.28
2951 4250 4.905456 ACTCCCTTCGTCCCATAATGAATA 59.095 41.667 0.00 0.00 0.00 1.75
2952 4251 3.716872 ACTCCCTTCGTCCCATAATGAAT 59.283 43.478 0.00 0.00 0.00 2.57
2953 4252 3.112263 ACTCCCTTCGTCCCATAATGAA 58.888 45.455 0.00 0.00 0.00 2.57
2954 4253 2.759355 ACTCCCTTCGTCCCATAATGA 58.241 47.619 0.00 0.00 0.00 2.57
2955 4254 3.244112 GGTACTCCCTTCGTCCCATAATG 60.244 52.174 0.00 0.00 0.00 1.90
2956 4255 2.970640 GGTACTCCCTTCGTCCCATAAT 59.029 50.000 0.00 0.00 0.00 1.28
2957 4256 2.292389 TGGTACTCCCTTCGTCCCATAA 60.292 50.000 0.00 0.00 0.00 1.90
2958 4257 1.288633 TGGTACTCCCTTCGTCCCATA 59.711 52.381 0.00 0.00 0.00 2.74
2959 4258 0.042131 TGGTACTCCCTTCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
2960 4259 0.042131 ATGGTACTCCCTTCGTCCCA 59.958 55.000 0.00 0.00 0.00 4.37
2961 4260 1.685517 GTATGGTACTCCCTTCGTCCC 59.314 57.143 0.00 0.00 0.00 4.46
2962 4261 2.381911 TGTATGGTACTCCCTTCGTCC 58.618 52.381 0.00 0.00 0.00 4.79
2963 4262 3.737355 GCTTGTATGGTACTCCCTTCGTC 60.737 52.174 0.00 0.00 0.00 4.20
2964 4263 2.167900 GCTTGTATGGTACTCCCTTCGT 59.832 50.000 0.00 0.00 0.00 3.85
2965 4264 2.167693 TGCTTGTATGGTACTCCCTTCG 59.832 50.000 0.00 0.00 0.00 3.79
2966 4265 3.798202 CTGCTTGTATGGTACTCCCTTC 58.202 50.000 0.00 0.00 0.00 3.46
2967 4266 2.092914 GCTGCTTGTATGGTACTCCCTT 60.093 50.000 0.00 0.00 0.00 3.95
2968 4267 1.486726 GCTGCTTGTATGGTACTCCCT 59.513 52.381 0.00 0.00 0.00 4.20
2969 4268 1.209504 TGCTGCTTGTATGGTACTCCC 59.790 52.381 0.00 0.00 0.00 4.30
2970 4269 2.691409 TGCTGCTTGTATGGTACTCC 57.309 50.000 0.00 0.00 0.00 3.85
2971 4270 2.797156 CGATGCTGCTTGTATGGTACTC 59.203 50.000 0.00 0.00 0.00 2.59
2972 4271 2.483714 CCGATGCTGCTTGTATGGTACT 60.484 50.000 0.00 0.00 0.00 2.73
2973 4272 1.867233 CCGATGCTGCTTGTATGGTAC 59.133 52.381 0.00 0.00 0.00 3.34
2974 4273 1.202639 CCCGATGCTGCTTGTATGGTA 60.203 52.381 0.00 0.00 0.00 3.25
2975 4274 0.464373 CCCGATGCTGCTTGTATGGT 60.464 55.000 0.00 0.00 0.00 3.55
2976 4275 1.168407 CCCCGATGCTGCTTGTATGG 61.168 60.000 0.00 0.00 0.00 2.74
2990 4289 7.685481 ACAATATGATTACAACATATCCCCGA 58.315 34.615 0.00 0.00 39.18 5.14
3060 4359 7.947782 TCCCAGTCCCTTTCTTACATATATT 57.052 36.000 0.00 0.00 0.00 1.28
3076 4375 1.065854 CAAGTCACCTGATCCCAGTCC 60.066 57.143 0.00 0.00 38.74 3.85
3077 4376 1.677217 GCAAGTCACCTGATCCCAGTC 60.677 57.143 0.00 0.00 38.74 3.51
3078 4377 0.326264 GCAAGTCACCTGATCCCAGT 59.674 55.000 0.00 0.00 38.74 4.00
3079 4378 0.393537 GGCAAGTCACCTGATCCCAG 60.394 60.000 0.00 0.00 40.09 4.45
3080 4379 1.685224 GGCAAGTCACCTGATCCCA 59.315 57.895 0.00 0.00 0.00 4.37
3081 4380 1.077429 GGGCAAGTCACCTGATCCC 60.077 63.158 0.00 0.00 0.00 3.85
3082 4381 0.678048 GTGGGCAAGTCACCTGATCC 60.678 60.000 0.00 0.00 0.00 3.36
3083 4382 0.326264 AGTGGGCAAGTCACCTGATC 59.674 55.000 0.00 0.00 35.87 2.92
3084 4383 0.037303 CAGTGGGCAAGTCACCTGAT 59.963 55.000 0.00 0.00 35.87 2.90
3085 4384 1.451504 CAGTGGGCAAGTCACCTGA 59.548 57.895 0.00 0.00 35.87 3.86
3086 4385 1.601759 CCAGTGGGCAAGTCACCTG 60.602 63.158 0.00 0.00 35.87 4.00
3087 4386 2.839098 CCAGTGGGCAAGTCACCT 59.161 61.111 0.00 0.00 35.87 4.00
3104 4403 1.419922 CATGTTACGGCGTGACTGC 59.580 57.895 30.52 9.89 0.00 4.40
3105 4404 1.419922 GCATGTTACGGCGTGACTG 59.580 57.895 30.52 25.22 0.00 3.51
3106 4405 3.870606 GCATGTTACGGCGTGACT 58.129 55.556 30.52 16.40 0.00 3.41
3114 4413 2.157668 GGATTGATAGCCGCATGTTACG 59.842 50.000 0.00 0.00 0.00 3.18
3115 4414 3.138304 TGGATTGATAGCCGCATGTTAC 58.862 45.455 0.00 0.00 30.32 2.50
3116 4415 3.483808 TGGATTGATAGCCGCATGTTA 57.516 42.857 0.00 0.00 30.32 2.41
3117 4416 2.346766 TGGATTGATAGCCGCATGTT 57.653 45.000 0.00 0.00 30.32 2.71
3118 4417 1.949525 GTTGGATTGATAGCCGCATGT 59.050 47.619 0.00 0.00 30.32 3.21
3119 4418 1.069703 CGTTGGATTGATAGCCGCATG 60.070 52.381 0.00 0.00 30.32 4.06
3120 4419 1.229428 CGTTGGATTGATAGCCGCAT 58.771 50.000 0.00 0.00 30.32 4.73
3121 4420 0.107897 ACGTTGGATTGATAGCCGCA 60.108 50.000 0.00 0.00 30.32 5.69
3122 4421 0.582005 GACGTTGGATTGATAGCCGC 59.418 55.000 0.00 0.00 30.32 6.53
3123 4422 1.217882 GGACGTTGGATTGATAGCCG 58.782 55.000 0.00 0.00 30.32 5.52
3124 4423 2.325583 TGGACGTTGGATTGATAGCC 57.674 50.000 0.00 0.00 0.00 3.93
3125 4424 3.876914 TGAATGGACGTTGGATTGATAGC 59.123 43.478 0.00 0.00 0.00 2.97
3126 4425 6.624352 ATTGAATGGACGTTGGATTGATAG 57.376 37.500 0.00 0.00 0.00 2.08
3127 4426 7.390440 GGATATTGAATGGACGTTGGATTGATA 59.610 37.037 0.00 0.00 0.00 2.15
3128 4427 6.207417 GGATATTGAATGGACGTTGGATTGAT 59.793 38.462 0.00 0.00 0.00 2.57
3129 4428 5.530915 GGATATTGAATGGACGTTGGATTGA 59.469 40.000 0.00 0.00 0.00 2.57
3130 4429 5.299028 TGGATATTGAATGGACGTTGGATTG 59.701 40.000 0.00 0.00 0.00 2.67
3131 4430 5.445069 TGGATATTGAATGGACGTTGGATT 58.555 37.500 0.00 0.00 0.00 3.01
3132 4431 5.047566 TGGATATTGAATGGACGTTGGAT 57.952 39.130 0.00 0.00 0.00 3.41
3133 4432 4.495690 TGGATATTGAATGGACGTTGGA 57.504 40.909 0.00 0.00 0.00 3.53
3134 4433 5.299028 TCATTGGATATTGAATGGACGTTGG 59.701 40.000 0.00 0.00 31.59 3.77
3135 4434 6.375945 TCATTGGATATTGAATGGACGTTG 57.624 37.500 0.00 0.00 31.59 4.10
3136 4435 7.403312 TTTCATTGGATATTGAATGGACGTT 57.597 32.000 0.00 0.00 32.27 3.99
3137 4436 6.039717 CCTTTCATTGGATATTGAATGGACGT 59.960 38.462 11.67 0.00 44.16 4.34
3138 4437 6.441274 CCTTTCATTGGATATTGAATGGACG 58.559 40.000 11.67 1.67 44.16 4.79
3139 4438 6.550854 TCCCTTTCATTGGATATTGAATGGAC 59.449 38.462 16.09 0.00 44.16 4.02
3140 4439 6.681538 TCCCTTTCATTGGATATTGAATGGA 58.318 36.000 16.09 10.06 44.16 3.41
3141 4440 6.982160 TCCCTTTCATTGGATATTGAATGG 57.018 37.500 10.68 10.68 42.49 3.16
3142 4441 8.644216 TCAATCCCTTTCATTGGATATTGAATG 58.356 33.333 0.00 0.00 40.50 2.67
3143 4442 8.786710 TCAATCCCTTTCATTGGATATTGAAT 57.213 30.769 0.00 0.00 40.50 2.57
3144 4443 8.786710 ATCAATCCCTTTCATTGGATATTGAA 57.213 30.769 0.00 0.00 40.50 2.69
3145 4444 7.452501 GGATCAATCCCTTTCATTGGATATTGA 59.547 37.037 0.00 0.00 40.50 2.57
3146 4445 7.233962 TGGATCAATCCCTTTCATTGGATATTG 59.766 37.037 6.57 0.00 46.59 1.90
3147 4446 7.307550 TGGATCAATCCCTTTCATTGGATATT 58.692 34.615 6.57 0.00 46.59 1.28
3148 4447 6.866621 TGGATCAATCCCTTTCATTGGATAT 58.133 36.000 6.57 0.00 46.59 1.63
3149 4448 6.278438 TGGATCAATCCCTTTCATTGGATA 57.722 37.500 6.57 0.00 46.59 2.59
3150 4449 5.146868 TGGATCAATCCCTTTCATTGGAT 57.853 39.130 6.57 0.00 46.59 3.41
3151 4450 4.606476 TGGATCAATCCCTTTCATTGGA 57.394 40.909 6.57 0.00 46.59 3.53
3152 4451 4.897076 TCATGGATCAATCCCTTTCATTGG 59.103 41.667 6.57 0.00 46.59 3.16
3153 4452 5.831525 TCTCATGGATCAATCCCTTTCATTG 59.168 40.000 6.57 0.00 46.59 2.82
3154 4453 6.022107 TCTCATGGATCAATCCCTTTCATT 57.978 37.500 6.57 0.00 46.59 2.57
3155 4454 5.658198 TCTCATGGATCAATCCCTTTCAT 57.342 39.130 6.57 0.00 46.59 2.57
3156 4455 5.455392 TTCTCATGGATCAATCCCTTTCA 57.545 39.130 6.57 0.00 46.59 2.69
3157 4456 5.068329 GGTTTCTCATGGATCAATCCCTTTC 59.932 44.000 6.57 0.00 46.59 2.62
3158 4457 4.958581 GGTTTCTCATGGATCAATCCCTTT 59.041 41.667 6.57 0.00 46.59 3.11
3159 4458 4.017222 TGGTTTCTCATGGATCAATCCCTT 60.017 41.667 6.57 0.00 46.59 3.95
3160 4459 3.528905 TGGTTTCTCATGGATCAATCCCT 59.471 43.478 6.57 0.00 46.59 4.20
3161 4460 3.887716 CTGGTTTCTCATGGATCAATCCC 59.112 47.826 6.57 0.00 46.59 3.85
3163 4462 3.317430 GGCTGGTTTCTCATGGATCAATC 59.683 47.826 0.00 0.00 0.00 2.67
3164 4463 3.294214 GGCTGGTTTCTCATGGATCAAT 58.706 45.455 0.00 0.00 0.00 2.57
3165 4464 2.041485 TGGCTGGTTTCTCATGGATCAA 59.959 45.455 0.00 0.00 0.00 2.57
3166 4465 1.634973 TGGCTGGTTTCTCATGGATCA 59.365 47.619 0.00 0.00 0.00 2.92
3167 4466 2.424956 GTTGGCTGGTTTCTCATGGATC 59.575 50.000 0.00 0.00 0.00 3.36
3168 4467 2.225091 TGTTGGCTGGTTTCTCATGGAT 60.225 45.455 0.00 0.00 0.00 3.41
3169 4468 1.144708 TGTTGGCTGGTTTCTCATGGA 59.855 47.619 0.00 0.00 0.00 3.41
3170 4469 1.542915 CTGTTGGCTGGTTTCTCATGG 59.457 52.381 0.00 0.00 0.00 3.66
3171 4470 2.233271 ACTGTTGGCTGGTTTCTCATG 58.767 47.619 0.00 0.00 0.00 3.07
3172 4471 2.624838 CAACTGTTGGCTGGTTTCTCAT 59.375 45.455 12.66 0.00 0.00 2.90
3173 4472 2.023673 CAACTGTTGGCTGGTTTCTCA 58.976 47.619 12.66 0.00 0.00 3.27
3174 4473 1.338020 CCAACTGTTGGCTGGTTTCTC 59.662 52.381 25.21 0.00 45.17 2.87
3175 4474 1.402787 CCAACTGTTGGCTGGTTTCT 58.597 50.000 25.21 0.00 45.17 2.52
3176 4475 3.965780 CCAACTGTTGGCTGGTTTC 57.034 52.632 25.21 0.00 45.17 2.78
3185 4484 3.361531 CGCGTAAAAATTGCCAACTGTTG 60.362 43.478 13.50 13.50 0.00 3.33
3186 4485 2.792116 CGCGTAAAAATTGCCAACTGTT 59.208 40.909 0.00 0.00 0.00 3.16
3187 4486 2.389998 CGCGTAAAAATTGCCAACTGT 58.610 42.857 0.00 0.00 0.00 3.55
3188 4487 1.124116 GCGCGTAAAAATTGCCAACTG 59.876 47.619 8.43 0.00 0.00 3.16
3189 4488 1.269309 TGCGCGTAAAAATTGCCAACT 60.269 42.857 8.43 0.00 0.00 3.16
3190 4489 1.132588 TGCGCGTAAAAATTGCCAAC 58.867 45.000 8.43 0.00 0.00 3.77
3191 4490 1.132588 GTGCGCGTAAAAATTGCCAA 58.867 45.000 8.43 0.00 0.00 4.52
3192 4491 0.030773 TGTGCGCGTAAAAATTGCCA 59.969 45.000 8.43 0.00 0.00 4.92
3193 4492 1.132588 TTGTGCGCGTAAAAATTGCC 58.867 45.000 8.43 0.00 0.00 4.52
3194 4493 3.144762 CAATTGTGCGCGTAAAAATTGC 58.855 40.909 23.56 3.37 33.08 3.56
3195 4494 4.367716 ACAATTGTGCGCGTAAAAATTG 57.632 36.364 28.70 28.70 41.68 2.32
3196 4495 6.698359 ATTACAATTGTGCGCGTAAAAATT 57.302 29.167 21.42 10.46 0.00 1.82
3197 4496 6.698359 AATTACAATTGTGCGCGTAAAAAT 57.302 29.167 21.42 6.49 0.00 1.82
3198 4497 6.512177 AAATTACAATTGTGCGCGTAAAAA 57.488 29.167 21.42 4.28 0.00 1.94
3199 4498 6.512177 AAAATTACAATTGTGCGCGTAAAA 57.488 29.167 21.42 4.69 0.00 1.52
3200 4499 6.183359 CGTAAAATTACAATTGTGCGCGTAAA 60.183 34.615 21.42 5.77 35.53 2.01
3201 4500 5.280911 CGTAAAATTACAATTGTGCGCGTAA 59.719 36.000 21.42 6.51 35.53 3.18
3202 4501 4.782030 CGTAAAATTACAATTGTGCGCGTA 59.218 37.500 21.42 0.00 35.53 4.42
3203 4502 3.600362 CGTAAAATTACAATTGTGCGCGT 59.400 39.130 21.42 6.28 35.53 6.01
3204 4503 3.600362 ACGTAAAATTACAATTGTGCGCG 59.400 39.130 21.42 15.78 42.89 6.86
3205 4504 4.380382 ACACGTAAAATTACAATTGTGCGC 59.620 37.500 21.42 0.00 42.89 6.09
3206 4505 6.574093 TGTACACGTAAAATTACAATTGTGCG 59.426 34.615 21.42 10.49 44.11 5.34
3207 4506 7.839438 TGTACACGTAAAATTACAATTGTGC 57.161 32.000 21.42 7.23 33.28 4.57
3208 4507 8.362304 GCATGTACACGTAAAATTACAATTGTG 58.638 33.333 21.42 4.10 33.28 3.33
3209 4508 8.076781 TGCATGTACACGTAAAATTACAATTGT 58.923 29.630 16.68 16.68 33.28 2.71
3210 4509 8.441312 TGCATGTACACGTAAAATTACAATTG 57.559 30.769 3.24 3.24 33.28 2.32
3211 4510 8.907685 GTTGCATGTACACGTAAAATTACAATT 58.092 29.630 0.00 0.00 33.28 2.32
3212 4511 8.076781 TGTTGCATGTACACGTAAAATTACAAT 58.923 29.630 0.00 0.00 33.28 2.71
3213 4512 7.415229 TGTTGCATGTACACGTAAAATTACAA 58.585 30.769 0.00 0.00 33.28 2.41
3214 4513 6.956047 TGTTGCATGTACACGTAAAATTACA 58.044 32.000 0.00 0.00 33.28 2.41
3215 4514 7.408921 GCTTGTTGCATGTACACGTAAAATTAC 60.409 37.037 0.00 0.00 42.31 1.89
3216 4515 6.579292 GCTTGTTGCATGTACACGTAAAATTA 59.421 34.615 0.00 0.00 42.31 1.40
3217 4516 5.401079 GCTTGTTGCATGTACACGTAAAATT 59.599 36.000 0.00 0.00 42.31 1.82
3218 4517 4.915085 GCTTGTTGCATGTACACGTAAAAT 59.085 37.500 0.00 0.00 42.31 1.82
3219 4518 4.035792 AGCTTGTTGCATGTACACGTAAAA 59.964 37.500 0.00 0.00 45.94 1.52
3220 4519 3.562141 AGCTTGTTGCATGTACACGTAAA 59.438 39.130 0.00 0.00 45.94 2.01
3221 4520 3.135225 AGCTTGTTGCATGTACACGTAA 58.865 40.909 0.00 0.00 45.94 3.18
3222 4521 2.761559 AGCTTGTTGCATGTACACGTA 58.238 42.857 0.00 0.00 45.94 3.57
3223 4522 1.593196 AGCTTGTTGCATGTACACGT 58.407 45.000 0.00 0.00 45.94 4.49
3224 4523 2.736721 AGTAGCTTGTTGCATGTACACG 59.263 45.455 0.00 0.00 45.94 4.49
3225 4524 3.498397 ACAGTAGCTTGTTGCATGTACAC 59.502 43.478 0.00 0.00 45.94 2.90
3226 4525 3.738982 ACAGTAGCTTGTTGCATGTACA 58.261 40.909 0.00 0.00 45.94 2.90
3227 4526 5.727791 GCATACAGTAGCTTGTTGCATGTAC 60.728 44.000 15.06 0.00 45.94 2.90
3228 4527 4.332543 GCATACAGTAGCTTGTTGCATGTA 59.667 41.667 15.06 0.00 45.94 2.29
3229 4528 3.127548 GCATACAGTAGCTTGTTGCATGT 59.872 43.478 15.06 0.00 45.94 3.21
3230 4529 3.127376 TGCATACAGTAGCTTGTTGCATG 59.873 43.478 17.13 10.41 45.94 4.06
3231 4530 3.346315 TGCATACAGTAGCTTGTTGCAT 58.654 40.909 17.13 0.25 45.94 3.96
3232 4531 2.777094 TGCATACAGTAGCTTGTTGCA 58.223 42.857 17.13 17.13 45.94 4.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.