Multiple sequence alignment - TraesCS5A01G407100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G407100 chr5A 100.000 3571 0 0 1 3571 597851380 597847810 0.000000e+00 6595
1 TraesCS5A01G407100 chr5A 88.281 128 13 2 336 462 134563347 134563473 6.170000e-33 152
2 TraesCS5A01G407100 chr5D 88.906 2605 168 52 461 3011 479157025 479154488 0.000000e+00 3097
3 TraesCS5A01G407100 chr5D 93.114 334 22 1 4 337 479157356 479157024 4.140000e-134 488
4 TraesCS5A01G407100 chr5D 87.402 127 16 0 336 462 313837869 313837743 2.870000e-31 147
5 TraesCS5A01G407100 chr5D 86.957 115 8 2 3209 3323 479154258 479154151 4.840000e-24 122
6 TraesCS5A01G407100 chr5B 89.017 2522 159 54 557 3004 586876969 586874492 0.000000e+00 3014
7 TraesCS5A01G407100 chr5B 84.343 198 13 5 3161 3358 586873536 586873357 1.020000e-40 178
8 TraesCS5A01G407100 chr5B 90.226 133 12 1 3033 3165 586874500 586874369 4.740000e-39 172
9 TraesCS5A01G407100 chr3B 77.664 1070 131 52 1362 2355 800996768 800997805 1.450000e-153 553
10 TraesCS5A01G407100 chr3B 86.260 131 17 1 333 462 763017649 763017779 1.340000e-29 141
11 TraesCS5A01G407100 chr3D 80.090 668 80 25 1736 2355 575922336 575921674 7.030000e-122 448
12 TraesCS5A01G407100 chr3D 76.136 616 83 29 1362 1940 126612539 126611951 7.600000e-67 265
13 TraesCS5A01G407100 chr7A 76.732 967 110 53 1362 2254 675068627 675067702 1.970000e-117 433
14 TraesCS5A01G407100 chr7A 86.131 137 16 3 332 467 425705188 425705322 1.030000e-30 145
15 TraesCS5A01G407100 chr7A 90.816 98 9 0 2258 2355 675066949 675066852 8.040000e-27 132
16 TraesCS5A01G407100 chr6B 79.204 678 84 31 1727 2355 148829153 148829822 5.510000e-113 418
17 TraesCS5A01G407100 chr6B 90.000 120 12 0 2236 2355 11708839 11708720 4.770000e-34 156
18 TraesCS5A01G407100 chr2A 75.740 845 110 43 1362 2144 6126454 6127265 1.590000e-88 337
19 TraesCS5A01G407100 chr2A 77.878 443 55 26 1058 1497 459446356 459446758 5.960000e-58 235
20 TraesCS5A01G407100 chr2A 77.427 443 56 30 1058 1497 459507477 459507878 1.290000e-54 224
21 TraesCS5A01G407100 chr2A 76.957 447 52 35 1058 1497 459545274 459545676 1.300000e-49 207
22 TraesCS5A01G407100 chr2A 85.075 134 17 3 335 467 97290531 97290400 2.240000e-27 134
23 TraesCS5A01G407100 chr6D 87.121 132 17 0 332 463 410401803 410401934 2.220000e-32 150
24 TraesCS5A01G407100 chr1D 87.023 131 15 2 338 467 22027721 22027850 2.870000e-31 147
25 TraesCS5A01G407100 chr2B 86.260 131 18 0 332 462 74045543 74045413 3.720000e-30 143
26 TraesCS5A01G407100 chr2D 85.606 132 18 1 332 462 408334157 408334026 1.730000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G407100 chr5A 597847810 597851380 3570 True 6595.000000 6595 100.000 1 3571 1 chr5A.!!$R1 3570
1 TraesCS5A01G407100 chr5D 479154151 479157356 3205 True 1235.666667 3097 89.659 4 3323 3 chr5D.!!$R2 3319
2 TraesCS5A01G407100 chr5B 586873357 586876969 3612 True 1121.333333 3014 87.862 557 3358 3 chr5B.!!$R1 2801
3 TraesCS5A01G407100 chr3B 800996768 800997805 1037 False 553.000000 553 77.664 1362 2355 1 chr3B.!!$F2 993
4 TraesCS5A01G407100 chr3D 575921674 575922336 662 True 448.000000 448 80.090 1736 2355 1 chr3D.!!$R2 619
5 TraesCS5A01G407100 chr3D 126611951 126612539 588 True 265.000000 265 76.136 1362 1940 1 chr3D.!!$R1 578
6 TraesCS5A01G407100 chr7A 675066852 675068627 1775 True 282.500000 433 83.774 1362 2355 2 chr7A.!!$R1 993
7 TraesCS5A01G407100 chr6B 148829153 148829822 669 False 418.000000 418 79.204 1727 2355 1 chr6B.!!$F1 628
8 TraesCS5A01G407100 chr2A 6126454 6127265 811 False 337.000000 337 75.740 1362 2144 1 chr2A.!!$F1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
549 550 1.202452 TCAGCCTGCATATCAGTCGTG 60.202 52.381 0.0 0.0 41.25 4.35 F
1870 1944 0.868406 GCTCTGTTCGTTGTTCCCAG 59.132 55.000 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 2028 0.880278 CAACACACTCAGACCGGTGG 60.88 60.0 14.63 3.59 37.72 4.61 R
3469 5237 0.109723 GCCCGCCCATATGTTTAGGA 59.89 55.0 1.24 0.00 0.00 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 8.106247 TGTTGGTTCAGTGTAATTCTTAATCC 57.894 34.615 0.00 0.00 0.00 3.01
39 40 3.084646 TTAATCCCTGGCCGGCGA 61.085 61.111 22.54 17.25 0.00 5.54
40 41 3.394635 TTAATCCCTGGCCGGCGAC 62.395 63.158 22.54 8.26 0.00 5.19
53 54 2.959275 GGCGACGTACAATCAGAGG 58.041 57.895 0.00 0.00 0.00 3.69
67 68 9.490379 GTACAATCAGAGGAAGAAAAAGACTAA 57.510 33.333 0.00 0.00 0.00 2.24
153 154 6.917217 TTGTATTGGCCTTTGTTTTTCTTG 57.083 33.333 3.32 0.00 0.00 3.02
175 176 9.935241 TCTTGATATTAACCAGATCTAAGATGC 57.065 33.333 0.00 0.00 0.00 3.91
183 184 4.228210 ACCAGATCTAAGATGCCTTTTGGA 59.772 41.667 0.00 0.00 44.07 3.53
186 187 5.826737 CAGATCTAAGATGCCTTTTGGATGT 59.173 40.000 0.00 0.00 44.07 3.06
187 188 6.017275 CAGATCTAAGATGCCTTTTGGATGTC 60.017 42.308 0.00 0.00 44.07 3.06
246 247 3.003897 TGTTCTTCATACCGGTTGTTTGC 59.996 43.478 15.04 0.00 0.00 3.68
278 279 5.587443 TGATGAAAGTGATAGAAGCACCATG 59.413 40.000 0.00 0.00 36.95 3.66
286 287 4.349503 AAGCACCATGAGGCGGCA 62.350 61.111 13.08 0.00 40.07 5.69
305 306 3.694072 GGCAGGATAAACTAACACATGCA 59.306 43.478 0.00 0.00 39.45 3.96
310 311 6.539826 CAGGATAAACTAACACATGCAGATGA 59.460 38.462 6.97 0.00 33.36 2.92
326 327 8.789762 CATGCAGATGAGATATTTTGGTTCATA 58.210 33.333 0.00 0.00 0.00 2.15
341 342 8.934023 TTTGGTTCATATTGGATAATACTCCC 57.066 34.615 0.00 0.00 34.12 4.30
342 343 7.888514 TGGTTCATATTGGATAATACTCCCT 57.111 36.000 0.00 0.00 34.12 4.20
343 344 7.918076 TGGTTCATATTGGATAATACTCCCTC 58.082 38.462 0.00 0.00 34.12 4.30
344 345 7.037586 TGGTTCATATTGGATAATACTCCCTCC 60.038 40.741 0.00 0.00 34.12 4.30
345 346 6.791867 TCATATTGGATAATACTCCCTCCG 57.208 41.667 0.00 0.00 34.12 4.63
346 347 6.261435 TCATATTGGATAATACTCCCTCCGT 58.739 40.000 0.00 0.00 34.12 4.69
347 348 6.380274 TCATATTGGATAATACTCCCTCCGTC 59.620 42.308 0.00 0.00 34.12 4.79
348 349 2.885616 TGGATAATACTCCCTCCGTCC 58.114 52.381 0.00 0.00 34.12 4.79
349 350 2.178325 TGGATAATACTCCCTCCGTCCA 59.822 50.000 0.00 0.00 34.12 4.02
350 351 3.236896 GGATAATACTCCCTCCGTCCAA 58.763 50.000 0.00 0.00 0.00 3.53
351 352 3.644738 GGATAATACTCCCTCCGTCCAAA 59.355 47.826 0.00 0.00 0.00 3.28
352 353 4.102054 GGATAATACTCCCTCCGTCCAAAA 59.898 45.833 0.00 0.00 0.00 2.44
353 354 5.397109 GGATAATACTCCCTCCGTCCAAAAA 60.397 44.000 0.00 0.00 0.00 1.94
354 355 4.586306 AATACTCCCTCCGTCCAAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
355 356 5.703730 AATACTCCCTCCGTCCAAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
356 357 3.345508 ACTCCCTCCGTCCAAAAATAC 57.654 47.619 0.00 0.00 0.00 1.89
357 358 2.910977 ACTCCCTCCGTCCAAAAATACT 59.089 45.455 0.00 0.00 0.00 2.12
358 359 3.329814 ACTCCCTCCGTCCAAAAATACTT 59.670 43.478 0.00 0.00 0.00 2.24
359 360 4.533311 ACTCCCTCCGTCCAAAAATACTTA 59.467 41.667 0.00 0.00 0.00 2.24
360 361 5.191124 ACTCCCTCCGTCCAAAAATACTTAT 59.809 40.000 0.00 0.00 0.00 1.73
361 362 5.433526 TCCCTCCGTCCAAAAATACTTATG 58.566 41.667 0.00 0.00 0.00 1.90
362 363 5.190132 TCCCTCCGTCCAAAAATACTTATGA 59.810 40.000 0.00 0.00 0.00 2.15
363 364 6.062095 CCCTCCGTCCAAAAATACTTATGAT 58.938 40.000 0.00 0.00 0.00 2.45
364 365 6.204882 CCCTCCGTCCAAAAATACTTATGATC 59.795 42.308 0.00 0.00 0.00 2.92
365 366 6.765989 CCTCCGTCCAAAAATACTTATGATCA 59.234 38.462 0.00 0.00 0.00 2.92
366 367 7.041780 CCTCCGTCCAAAAATACTTATGATCAG 60.042 40.741 0.09 0.00 0.00 2.90
367 368 7.561251 TCCGTCCAAAAATACTTATGATCAGA 58.439 34.615 0.09 0.00 0.00 3.27
368 369 8.044309 TCCGTCCAAAAATACTTATGATCAGAA 58.956 33.333 2.26 2.26 0.00 3.02
369 370 8.840321 CCGTCCAAAAATACTTATGATCAGAAT 58.160 33.333 2.71 0.00 0.00 2.40
456 457 8.348285 TGATAACAAGTATTTTTGGAGGAAGG 57.652 34.615 0.00 0.00 32.32 3.46
457 458 7.396055 TGATAACAAGTATTTTTGGAGGAAGGG 59.604 37.037 0.00 0.00 32.32 3.95
458 459 5.333566 ACAAGTATTTTTGGAGGAAGGGA 57.666 39.130 0.00 0.00 32.32 4.20
459 460 5.325239 ACAAGTATTTTTGGAGGAAGGGAG 58.675 41.667 0.00 0.00 32.32 4.30
465 466 6.652205 ATTTTTGGAGGAAGGGAGTATGTA 57.348 37.500 0.00 0.00 0.00 2.29
468 469 4.552883 TGGAGGAAGGGAGTATGTATGA 57.447 45.455 0.00 0.00 0.00 2.15
533 534 9.103861 GTAGAGCCCTAAAATTGATATATCAGC 57.896 37.037 14.86 12.12 38.19 4.26
536 537 6.888632 AGCCCTAAAATTGATATATCAGCCTG 59.111 38.462 14.86 5.77 38.19 4.85
537 538 6.405176 GCCCTAAAATTGATATATCAGCCTGC 60.405 42.308 14.86 8.01 38.19 4.85
543 544 9.470399 AAAATTGATATATCAGCCTGCATATCA 57.530 29.630 14.86 17.74 38.16 2.15
549 550 1.202452 TCAGCCTGCATATCAGTCGTG 60.202 52.381 0.00 0.00 41.25 4.35
551 552 1.208052 AGCCTGCATATCAGTCGTGTT 59.792 47.619 0.00 0.00 41.25 3.32
574 575 7.444792 TGTTGGCTTAGATTTAAAAACTCGGTA 59.555 33.333 0.00 0.00 0.00 4.02
586 587 6.453926 AAAAACTCGGTATAGAGACTCCTC 57.546 41.667 0.00 0.00 40.57 3.71
886 896 4.746309 TGTGAGGCCAGCCCATGC 62.746 66.667 5.01 0.00 36.58 4.06
889 899 2.443390 GAGGCCAGCCCATGCATT 60.443 61.111 5.01 0.00 41.13 3.56
974 984 3.073946 TGCCAGCCTATATAGAAAACCCC 59.926 47.826 11.53 0.00 0.00 4.95
975 985 3.073946 GCCAGCCTATATAGAAAACCCCA 59.926 47.826 11.53 0.00 0.00 4.96
1119 1132 3.495352 GAACTACGGCCCCGGATCG 62.495 68.421 0.73 6.23 44.69 3.69
1173 1186 5.751028 CCTACTCTTGATCGATTGGAAACTC 59.249 44.000 0.00 0.00 0.00 3.01
1175 1188 2.930040 TCTTGATCGATTGGAAACTCGC 59.070 45.455 0.00 0.00 34.94 5.03
1204 1217 2.554893 CCTCTCCTAGATCGGTAGCAAC 59.445 54.545 0.00 0.00 0.00 4.17
1277 1290 7.221838 GCTTAGCTCTAAATCTTATATGCTCGG 59.778 40.741 0.00 0.00 0.00 4.63
1281 1296 7.178628 AGCTCTAAATCTTATATGCTCGGGTTA 59.821 37.037 0.00 0.00 0.00 2.85
1287 1302 7.956328 ATCTTATATGCTCGGGTTAGATGTA 57.044 36.000 0.00 0.00 0.00 2.29
1311 1327 2.270297 ATTCACGCGCCTTGGATTGC 62.270 55.000 5.73 0.00 0.00 3.56
1330 1346 3.974719 TGCTTGATGGTTTTATGCCCTA 58.025 40.909 0.00 0.00 0.00 3.53
1505 1546 5.612725 TGGATTTCCTAAATTTGATGGCC 57.387 39.130 0.00 0.00 36.82 5.36
1603 1669 2.311463 TGCTAGAGACTACCATCTGGC 58.689 52.381 0.00 3.88 46.72 4.85
1630 1696 5.024785 TGTGTTGTTACATACTGTGGTGA 57.975 39.130 0.00 0.00 36.50 4.02
1676 1742 9.599866 TCATCTATTTAGAATAGGTGTGTGTTG 57.400 33.333 16.40 0.00 35.01 3.33
1701 1771 3.769844 CTCCTCTTGCCAGAGTAAACCTA 59.230 47.826 13.39 0.00 44.85 3.08
1705 1775 5.513267 CCTCTTGCCAGAGTAAACCTAGTTT 60.513 44.000 13.39 0.00 44.85 2.66
1706 1776 5.937111 TCTTGCCAGAGTAAACCTAGTTTT 58.063 37.500 0.00 0.00 37.01 2.43
1707 1777 5.763204 TCTTGCCAGAGTAAACCTAGTTTTG 59.237 40.000 0.00 0.00 37.01 2.44
1708 1778 3.818773 TGCCAGAGTAAACCTAGTTTTGC 59.181 43.478 0.00 0.00 37.01 3.68
1709 1779 3.818773 GCCAGAGTAAACCTAGTTTTGCA 59.181 43.478 3.84 0.00 37.01 4.08
1710 1780 4.277423 GCCAGAGTAAACCTAGTTTTGCAA 59.723 41.667 0.00 0.00 37.01 4.08
1711 1781 5.048013 GCCAGAGTAAACCTAGTTTTGCAAT 60.048 40.000 0.00 0.00 37.01 3.56
1712 1782 6.612306 CCAGAGTAAACCTAGTTTTGCAATC 58.388 40.000 0.00 0.00 37.01 2.67
1713 1783 6.206634 CCAGAGTAAACCTAGTTTTGCAATCA 59.793 38.462 0.00 0.00 37.01 2.57
1714 1784 7.094205 CCAGAGTAAACCTAGTTTTGCAATCAT 60.094 37.037 0.00 0.00 37.01 2.45
1715 1785 7.965107 CAGAGTAAACCTAGTTTTGCAATCATC 59.035 37.037 0.00 0.00 37.01 2.92
1716 1786 7.665559 AGAGTAAACCTAGTTTTGCAATCATCA 59.334 33.333 0.00 0.00 37.01 3.07
1717 1787 7.593825 AGTAAACCTAGTTTTGCAATCATCAC 58.406 34.615 0.00 0.00 37.01 3.06
1718 1788 5.391312 AACCTAGTTTTGCAATCATCACC 57.609 39.130 0.00 0.00 0.00 4.02
1719 1789 4.666512 ACCTAGTTTTGCAATCATCACCT 58.333 39.130 0.00 0.00 0.00 4.00
1720 1790 4.702131 ACCTAGTTTTGCAATCATCACCTC 59.298 41.667 0.00 0.00 0.00 3.85
1721 1791 4.701651 CCTAGTTTTGCAATCATCACCTCA 59.298 41.667 0.00 0.00 0.00 3.86
1722 1792 5.359009 CCTAGTTTTGCAATCATCACCTCAT 59.641 40.000 0.00 0.00 0.00 2.90
1723 1793 6.543465 CCTAGTTTTGCAATCATCACCTCATA 59.457 38.462 0.00 0.00 0.00 2.15
1724 1794 6.839124 AGTTTTGCAATCATCACCTCATAA 57.161 33.333 0.00 0.00 0.00 1.90
1725 1795 7.414222 AGTTTTGCAATCATCACCTCATAAT 57.586 32.000 0.00 0.00 0.00 1.28
1746 1816 8.627403 CATAATAGTTTTGCAATCATCACCTCT 58.373 33.333 0.00 0.00 0.00 3.69
1789 1859 9.248291 GTTTTGTATCTGTTTGATCAATGTGTT 57.752 29.630 9.40 0.00 36.65 3.32
1821 1891 2.026262 ACCATAAGGCATCTTGGAACGT 60.026 45.455 6.55 0.00 39.06 3.99
1824 1894 4.442706 CATAAGGCATCTTGGAACGTACT 58.557 43.478 0.00 0.00 34.59 2.73
1859 1929 7.265647 TGACTACATGATACTAGCTCTGTTC 57.734 40.000 0.00 0.00 0.00 3.18
1870 1944 0.868406 GCTCTGTTCGTTGTTCCCAG 59.132 55.000 0.00 0.00 0.00 4.45
1915 1990 3.764237 TCTGTCCCCAGTTTCAACTAC 57.236 47.619 0.00 0.00 39.82 2.73
1950 2027 9.581099 CTGTTAACTTCCAAGTAATTTTTGTGT 57.419 29.630 7.22 0.00 38.57 3.72
1951 2028 9.575783 TGTTAACTTCCAAGTAATTTTTGTGTC 57.424 29.630 7.22 0.00 38.57 3.67
1952 2029 9.027129 GTTAACTTCCAAGTAATTTTTGTGTCC 57.973 33.333 0.00 0.00 38.57 4.02
1967 2064 1.006102 GTCCACCGGTCTGAGTGTG 60.006 63.158 2.59 0.00 31.88 3.82
2063 2175 8.647256 ACTGAGATGATTTTCCTTTTGAAGAT 57.353 30.769 0.00 0.00 33.63 2.40
2090 2204 8.482128 TGTTGTTTCCATTTCCACTTTTATCTT 58.518 29.630 0.00 0.00 0.00 2.40
2197 2312 9.897744 CTGAATGTTTGTGTGTGACTAATTTAT 57.102 29.630 0.00 0.00 0.00 1.40
2414 3285 2.160205 TGGTGACAAAACCGTGAAACA 58.840 42.857 0.00 0.00 43.73 2.83
2416 3287 3.005472 TGGTGACAAAACCGTGAAACAAA 59.995 39.130 0.00 0.00 43.73 2.83
2463 3334 7.591006 TGTGAAACCGATAATTCTGTTACTC 57.409 36.000 0.00 0.00 34.36 2.59
2465 3336 7.876068 TGTGAAACCGATAATTCTGTTACTCTT 59.124 33.333 0.00 0.00 34.36 2.85
2474 3345 5.886960 ATTCTGTTACTCTTGTGCCATTC 57.113 39.130 0.00 0.00 0.00 2.67
2484 3355 4.724399 TCTTGTGCCATTCTGGTTAGAAA 58.276 39.130 0.00 0.00 45.47 2.52
2527 3398 4.966965 TTTATTATTTTGCGAAGGCCGA 57.033 36.364 0.00 0.00 41.76 5.54
2602 3476 3.222173 TGCCTGGCTTCTGTTCTTAAA 57.778 42.857 21.03 0.00 0.00 1.52
2607 3481 4.142513 CCTGGCTTCTGTTCTTAAATCAGC 60.143 45.833 0.00 0.00 0.00 4.26
2635 3509 4.518970 GCTGTCCTCTACTATTCTCTCTGG 59.481 50.000 0.00 0.00 0.00 3.86
2700 3574 1.068264 GCTGCCCTGACTTTGCTTAAC 60.068 52.381 0.00 0.00 0.00 2.01
2710 3584 7.610305 CCCTGACTTTGCTTAACCTAGAAAATA 59.390 37.037 0.00 0.00 0.00 1.40
2737 3611 9.689976 TGTTTGTAATTGTTAAATGGTCATCTG 57.310 29.630 0.00 0.00 0.00 2.90
2754 3628 4.455533 TCATCTGTAACACTTGTCAATGCC 59.544 41.667 0.00 0.00 0.00 4.40
2790 3664 2.279935 TTAGGTGCGGGTCAAAACAT 57.720 45.000 0.00 0.00 0.00 2.71
2794 3668 0.249238 GTGCGGGTCAAAACATGCAA 60.249 50.000 0.00 0.00 38.34 4.08
2823 3697 8.495949 GTGGAATTATTCGTTGGTCACATATAG 58.504 37.037 0.00 0.00 0.00 1.31
2878 3756 2.566529 CGCGACTGTCCTGCTACA 59.433 61.111 0.00 0.00 0.00 2.74
2914 3792 3.264450 CACCTCCCAGATGGTTAGAACTT 59.736 47.826 0.00 0.00 33.75 2.66
2940 3818 1.147473 GGCCAACAATTTCTTTGCCG 58.853 50.000 0.00 0.00 39.03 5.69
2957 3835 1.406887 GCCGCCCTCTTGTTCTAATCA 60.407 52.381 0.00 0.00 0.00 2.57
2975 3853 4.524802 ATCATGGAAAACCTGGAGCATA 57.475 40.909 0.00 0.00 0.00 3.14
2976 3854 4.524802 TCATGGAAAACCTGGAGCATAT 57.475 40.909 0.00 0.00 0.00 1.78
3000 3878 0.538584 TCGCAGATCTGACAGCCAAT 59.461 50.000 27.04 0.00 0.00 3.16
3005 3883 3.542648 CAGATCTGACAGCCAATGATGT 58.457 45.455 18.34 0.00 45.47 3.06
3013 3891 3.592059 ACAGCCAATGATGTCAAATTGC 58.408 40.909 6.22 3.53 35.98 3.56
3014 3892 3.259876 ACAGCCAATGATGTCAAATTGCT 59.740 39.130 6.22 5.16 35.98 3.91
3015 3893 3.616821 CAGCCAATGATGTCAAATTGCTG 59.383 43.478 14.37 14.37 34.63 4.41
3016 3894 2.933906 GCCAATGATGTCAAATTGCTGG 59.066 45.455 6.22 0.00 33.34 4.85
3017 3895 3.618019 GCCAATGATGTCAAATTGCTGGT 60.618 43.478 6.22 0.00 33.34 4.00
3018 3896 4.381825 GCCAATGATGTCAAATTGCTGGTA 60.382 41.667 6.22 0.00 33.34 3.25
3019 3897 5.682990 GCCAATGATGTCAAATTGCTGGTAT 60.683 40.000 6.22 0.00 33.34 2.73
3020 3898 6.342906 CCAATGATGTCAAATTGCTGGTATT 58.657 36.000 6.22 0.00 33.34 1.89
3021 3899 6.819649 CCAATGATGTCAAATTGCTGGTATTT 59.180 34.615 6.22 0.00 33.34 1.40
3022 3900 7.334921 CCAATGATGTCAAATTGCTGGTATTTT 59.665 33.333 6.22 0.00 33.34 1.82
3023 3901 8.723311 CAATGATGTCAAATTGCTGGTATTTTT 58.277 29.630 0.00 0.00 0.00 1.94
3024 3902 9.941325 AATGATGTCAAATTGCTGGTATTTTTA 57.059 25.926 0.00 0.00 0.00 1.52
3026 3904 9.368674 TGATGTCAAATTGCTGGTATTTTTATG 57.631 29.630 0.00 0.00 0.00 1.90
3027 3905 9.369904 GATGTCAAATTGCTGGTATTTTTATGT 57.630 29.630 0.00 0.00 0.00 2.29
3034 3912 8.661352 ATTGCTGGTATTTTTATGTAATTGCC 57.339 30.769 0.00 0.00 0.00 4.52
3035 3913 7.175347 TGCTGGTATTTTTATGTAATTGCCA 57.825 32.000 0.00 0.00 0.00 4.92
3036 3914 7.615403 TGCTGGTATTTTTATGTAATTGCCAA 58.385 30.769 0.00 0.00 0.00 4.52
3037 3915 8.097038 TGCTGGTATTTTTATGTAATTGCCAAA 58.903 29.630 0.00 0.00 0.00 3.28
3038 3916 9.108284 GCTGGTATTTTTATGTAATTGCCAAAT 57.892 29.630 0.00 0.00 0.00 2.32
3050 3928 7.939782 TGTAATTGCCAAATGATACCTGTATG 58.060 34.615 0.00 0.00 0.00 2.39
3144 4022 3.972502 GTCCTTTTGTATTTGTGCGTGAC 59.027 43.478 0.00 0.00 0.00 3.67
3166 4044 4.336433 ACCAAGCATGAGTGGAATTATTCG 59.664 41.667 19.00 0.00 38.36 3.34
3233 4948 2.632537 AGGGAGTAGAAAGCTTTCCCA 58.367 47.619 30.83 18.91 43.81 4.37
3280 5048 5.663795 AAGCTTAGTGATACGATTGCATG 57.336 39.130 0.00 0.00 0.00 4.06
3282 5050 5.842907 AGCTTAGTGATACGATTGCATGTA 58.157 37.500 0.00 0.00 0.00 2.29
3308 5076 5.521906 TTGATGTGTGATCTAGGAGTAGC 57.478 43.478 0.00 0.00 0.00 3.58
3323 5091 4.840680 AGGAGTAGCATGCATGGATACTTA 59.159 41.667 27.34 0.00 37.61 2.24
3354 5122 8.053026 ACCAGTGTATCTGTATCGGATATAAC 57.947 38.462 0.29 0.00 42.19 1.89
3358 5126 9.610705 AGTGTATCTGTATCGGATATAACGTAT 57.389 33.333 0.29 0.00 34.72 3.06
3359 5127 9.861138 GTGTATCTGTATCGGATATAACGTATC 57.139 37.037 0.29 0.00 34.72 2.24
3360 5128 8.758715 TGTATCTGTATCGGATATAACGTATCG 58.241 37.037 0.29 0.00 34.72 2.92
3361 5129 6.594284 TCTGTATCGGATATAACGTATCGG 57.406 41.667 0.29 0.00 0.00 4.18
3362 5130 6.340522 TCTGTATCGGATATAACGTATCGGA 58.659 40.000 8.85 8.85 37.57 4.55
3363 5131 6.988580 TCTGTATCGGATATAACGTATCGGAT 59.011 38.462 18.27 18.27 42.60 4.18
3364 5132 8.143835 TCTGTATCGGATATAACGTATCGGATA 58.856 37.037 16.83 16.83 41.29 2.59
3388 5156 3.256704 GGTATCCACCCCCTGATTATCA 58.743 50.000 0.00 0.00 39.11 2.15
3389 5157 3.264450 GGTATCCACCCCCTGATTATCAG 59.736 52.174 14.80 14.80 40.39 2.90
3432 5200 7.651808 ACAACTTATGTATAATTGGCTGATGC 58.348 34.615 0.00 0.00 41.63 3.91
3433 5201 7.285172 ACAACTTATGTATAATTGGCTGATGCA 59.715 33.333 0.00 0.00 41.63 3.96
3434 5202 8.301720 CAACTTATGTATAATTGGCTGATGCAT 58.698 33.333 0.00 0.00 41.91 3.96
3435 5203 8.413309 ACTTATGTATAATTGGCTGATGCATT 57.587 30.769 0.00 0.00 41.91 3.56
3436 5204 8.863086 ACTTATGTATAATTGGCTGATGCATTT 58.137 29.630 0.00 0.00 41.91 2.32
3437 5205 9.701098 CTTATGTATAATTGGCTGATGCATTTT 57.299 29.630 0.00 0.00 41.91 1.82
3438 5206 7.956420 ATGTATAATTGGCTGATGCATTTTG 57.044 32.000 0.00 0.00 41.91 2.44
3439 5207 6.282167 TGTATAATTGGCTGATGCATTTTGG 58.718 36.000 0.00 0.00 41.91 3.28
3440 5208 3.985019 AATTGGCTGATGCATTTTGGA 57.015 38.095 0.00 0.00 41.91 3.53
3441 5209 4.497291 AATTGGCTGATGCATTTTGGAT 57.503 36.364 0.00 0.00 41.91 3.41
3442 5210 5.617528 AATTGGCTGATGCATTTTGGATA 57.382 34.783 0.00 0.00 41.91 2.59
3443 5211 4.389890 TTGGCTGATGCATTTTGGATAC 57.610 40.909 0.00 0.00 41.91 2.24
3444 5212 2.358582 TGGCTGATGCATTTTGGATACG 59.641 45.455 0.00 0.00 41.91 3.06
3445 5213 2.618241 GGCTGATGCATTTTGGATACGA 59.382 45.455 0.00 0.00 41.91 3.43
3446 5214 3.254166 GGCTGATGCATTTTGGATACGAT 59.746 43.478 0.00 0.00 41.91 3.73
3447 5215 4.455533 GGCTGATGCATTTTGGATACGATA 59.544 41.667 0.00 0.00 41.91 2.92
3448 5216 5.385617 GCTGATGCATTTTGGATACGATAC 58.614 41.667 0.00 0.00 38.34 2.24
3449 5217 5.049474 GCTGATGCATTTTGGATACGATACA 60.049 40.000 0.00 0.00 38.34 2.29
3450 5218 6.513230 GCTGATGCATTTTGGATACGATACAA 60.513 38.462 0.00 0.00 38.34 2.41
3451 5219 6.724263 TGATGCATTTTGGATACGATACAAC 58.276 36.000 0.00 0.00 42.51 3.32
3452 5220 6.317391 TGATGCATTTTGGATACGATACAACA 59.683 34.615 0.00 0.00 42.51 3.33
3453 5221 6.117911 TGCATTTTGGATACGATACAACAG 57.882 37.500 0.00 0.00 42.51 3.16
3454 5222 5.065859 TGCATTTTGGATACGATACAACAGG 59.934 40.000 0.00 0.00 42.51 4.00
3455 5223 5.295787 GCATTTTGGATACGATACAACAGGA 59.704 40.000 0.00 0.00 42.51 3.86
3456 5224 6.715464 CATTTTGGATACGATACAACAGGAC 58.285 40.000 0.00 0.00 42.51 3.85
3457 5225 4.395959 TTGGATACGATACAACAGGACC 57.604 45.455 0.00 0.00 42.51 4.46
3458 5226 2.696707 TGGATACGATACAACAGGACCC 59.303 50.000 0.00 0.00 42.51 4.46
3459 5227 2.036862 GGATACGATACAACAGGACCCC 59.963 54.545 0.00 0.00 0.00 4.95
3460 5228 2.537633 TACGATACAACAGGACCCCT 57.462 50.000 0.00 0.00 0.00 4.79
3461 5229 1.192428 ACGATACAACAGGACCCCTC 58.808 55.000 0.00 0.00 0.00 4.30
3462 5230 1.191535 CGATACAACAGGACCCCTCA 58.808 55.000 0.00 0.00 0.00 3.86
3463 5231 1.762957 CGATACAACAGGACCCCTCAT 59.237 52.381 0.00 0.00 0.00 2.90
3464 5232 2.963101 CGATACAACAGGACCCCTCATA 59.037 50.000 0.00 0.00 0.00 2.15
3465 5233 3.578716 CGATACAACAGGACCCCTCATAT 59.421 47.826 0.00 0.00 0.00 1.78
3466 5234 4.322049 CGATACAACAGGACCCCTCATATC 60.322 50.000 0.00 0.00 0.00 1.63
3467 5235 2.127708 ACAACAGGACCCCTCATATCC 58.872 52.381 0.00 0.00 0.00 2.59
3468 5236 1.070758 CAACAGGACCCCTCATATCCG 59.929 57.143 0.00 0.00 37.60 4.18
3469 5237 0.264955 ACAGGACCCCTCATATCCGT 59.735 55.000 0.00 0.00 37.60 4.69
3470 5238 0.969894 CAGGACCCCTCATATCCGTC 59.030 60.000 0.00 0.00 37.60 4.79
3471 5239 0.178929 AGGACCCCTCATATCCGTCC 60.179 60.000 0.00 0.00 42.79 4.79
3472 5240 0.178929 GGACCCCTCATATCCGTCCT 60.179 60.000 0.00 0.00 39.94 3.85
3473 5241 1.076677 GGACCCCTCATATCCGTCCTA 59.923 57.143 0.00 0.00 39.94 2.94
3474 5242 2.492196 GGACCCCTCATATCCGTCCTAA 60.492 54.545 0.00 0.00 39.94 2.69
3475 5243 3.236896 GACCCCTCATATCCGTCCTAAA 58.763 50.000 0.00 0.00 0.00 1.85
3476 5244 2.970640 ACCCCTCATATCCGTCCTAAAC 59.029 50.000 0.00 0.00 0.00 2.01
3477 5245 2.969950 CCCCTCATATCCGTCCTAAACA 59.030 50.000 0.00 0.00 0.00 2.83
3478 5246 3.583086 CCCCTCATATCCGTCCTAAACAT 59.417 47.826 0.00 0.00 0.00 2.71
3479 5247 4.775780 CCCCTCATATCCGTCCTAAACATA 59.224 45.833 0.00 0.00 0.00 2.29
3480 5248 5.425539 CCCCTCATATCCGTCCTAAACATAT 59.574 44.000 0.00 0.00 0.00 1.78
3481 5249 6.341316 CCCTCATATCCGTCCTAAACATATG 58.659 44.000 0.00 0.00 30.70 1.78
3482 5250 6.341316 CCTCATATCCGTCCTAAACATATGG 58.659 44.000 7.80 0.00 30.55 2.74
3483 5251 6.294361 TCATATCCGTCCTAAACATATGGG 57.706 41.667 7.80 0.00 30.55 4.00
3484 5252 2.922740 TCCGTCCTAAACATATGGGC 57.077 50.000 7.80 0.00 0.00 5.36
3485 5253 1.069513 TCCGTCCTAAACATATGGGCG 59.930 52.381 7.80 1.64 47.00 6.13
3486 5254 1.508632 CGTCCTAAACATATGGGCGG 58.491 55.000 7.80 2.24 44.17 6.13
3487 5255 1.876416 CGTCCTAAACATATGGGCGGG 60.876 57.143 7.80 4.40 44.17 6.13
3488 5256 0.109723 TCCTAAACATATGGGCGGGC 59.890 55.000 7.80 0.00 0.00 6.13
3489 5257 0.110486 CCTAAACATATGGGCGGGCT 59.890 55.000 7.80 0.00 0.00 5.19
3490 5258 1.238439 CTAAACATATGGGCGGGCTG 58.762 55.000 7.80 0.00 0.00 4.85
3491 5259 0.840617 TAAACATATGGGCGGGCTGA 59.159 50.000 7.80 0.00 0.00 4.26
3492 5260 0.751643 AAACATATGGGCGGGCTGAC 60.752 55.000 7.80 0.00 0.00 3.51
3504 5272 2.746277 GCTGACCGGTGGCGAAAT 60.746 61.111 14.63 0.00 0.00 2.17
3505 5273 2.332654 GCTGACCGGTGGCGAAATT 61.333 57.895 14.63 0.00 0.00 1.82
3506 5274 1.501741 CTGACCGGTGGCGAAATTG 59.498 57.895 14.63 0.00 0.00 2.32
3507 5275 2.178273 GACCGGTGGCGAAATTGC 59.822 61.111 14.63 0.00 0.00 3.56
3515 5283 4.260194 GCGAAATTGCCACCCAAC 57.740 55.556 0.00 0.00 35.99 3.77
3516 5284 1.374125 GCGAAATTGCCACCCAACC 60.374 57.895 0.00 0.00 35.99 3.77
3517 5285 1.080839 CGAAATTGCCACCCAACCG 60.081 57.895 0.00 0.00 35.99 4.44
3518 5286 1.374125 GAAATTGCCACCCAACCGC 60.374 57.895 0.00 0.00 35.99 5.68
3519 5287 3.219645 AAATTGCCACCCAACCGCG 62.220 57.895 0.00 0.00 35.99 6.46
3527 5295 4.708386 CCCAACCGCGGCTGGTAA 62.708 66.667 37.96 0.00 42.89 2.85
3528 5296 2.670251 CCAACCGCGGCTGGTAAA 60.670 61.111 34.50 0.00 42.89 2.01
3529 5297 2.559330 CAACCGCGGCTGGTAAAC 59.441 61.111 28.58 0.00 42.89 2.01
3530 5298 2.670592 AACCGCGGCTGGTAAACC 60.671 61.111 28.58 0.00 42.89 3.27
3531 5299 3.479127 AACCGCGGCTGGTAAACCA 62.479 57.895 28.58 1.13 42.89 3.67
3541 5309 1.033574 TGGTAAACCAGGCCAAAACG 58.966 50.000 5.01 0.00 42.01 3.60
3542 5310 1.034356 GGTAAACCAGGCCAAAACGT 58.966 50.000 5.01 0.00 35.64 3.99
3543 5311 1.409790 GGTAAACCAGGCCAAAACGTT 59.590 47.619 5.01 0.00 35.64 3.99
3544 5312 2.159071 GGTAAACCAGGCCAAAACGTTT 60.159 45.455 7.96 7.96 35.64 3.60
3545 5313 2.017138 AAACCAGGCCAAAACGTTTG 57.983 45.000 15.46 8.73 0.00 2.93
3546 5314 0.176910 AACCAGGCCAAAACGTTTGG 59.823 50.000 15.46 17.78 42.37 3.28
3547 5315 0.684805 ACCAGGCCAAAACGTTTGGA 60.685 50.000 24.53 0.00 42.06 3.53
3548 5316 0.461961 CCAGGCCAAAACGTTTGGAA 59.538 50.000 24.53 0.00 42.06 3.53
3549 5317 1.069978 CCAGGCCAAAACGTTTGGAAT 59.930 47.619 24.53 13.65 42.06 3.01
3550 5318 2.403259 CAGGCCAAAACGTTTGGAATC 58.597 47.619 24.53 15.78 42.06 2.52
3551 5319 1.000717 AGGCCAAAACGTTTGGAATCG 60.001 47.619 24.53 8.75 42.06 3.34
3552 5320 0.781787 GCCAAAACGTTTGGAATCGC 59.218 50.000 24.53 13.79 42.06 4.58
3553 5321 1.866063 GCCAAAACGTTTGGAATCGCA 60.866 47.619 24.53 0.00 42.06 5.10
3554 5322 2.671596 CCAAAACGTTTGGAATCGCAT 58.328 42.857 17.19 0.00 42.06 4.73
3555 5323 2.661195 CCAAAACGTTTGGAATCGCATC 59.339 45.455 17.19 0.00 42.06 3.91
3556 5324 3.564511 CAAAACGTTTGGAATCGCATCT 58.435 40.909 15.46 0.00 0.00 2.90
3557 5325 2.900122 AACGTTTGGAATCGCATCTG 57.100 45.000 0.00 0.00 0.00 2.90
3558 5326 1.086696 ACGTTTGGAATCGCATCTGG 58.913 50.000 0.00 0.00 0.00 3.86
3559 5327 1.338674 ACGTTTGGAATCGCATCTGGA 60.339 47.619 0.00 0.00 0.00 3.86
3560 5328 1.062587 CGTTTGGAATCGCATCTGGAC 59.937 52.381 0.00 0.00 0.00 4.02
3561 5329 1.062587 GTTTGGAATCGCATCTGGACG 59.937 52.381 0.00 0.00 0.00 4.79
3562 5330 1.089481 TTGGAATCGCATCTGGACGC 61.089 55.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.767524 AAGAATTACACTGAACCAACAACA 57.232 33.333 0.00 0.00 0.00 3.33
1 2 9.394477 GATTAAGAATTACACTGAACCAACAAC 57.606 33.333 0.00 0.00 0.00 3.32
2 3 8.573035 GGATTAAGAATTACACTGAACCAACAA 58.427 33.333 0.00 0.00 0.00 2.83
39 40 6.424207 GTCTTTTTCTTCCTCTGATTGTACGT 59.576 38.462 0.00 0.00 0.00 3.57
40 41 6.647067 AGTCTTTTTCTTCCTCTGATTGTACG 59.353 38.462 0.00 0.00 0.00 3.67
112 113 8.783093 CCAATACAAAGAATAGACAAGTGAACA 58.217 33.333 0.00 0.00 0.00 3.18
135 136 9.267084 GTTAATATCAAGAAAAACAAAGGCCAA 57.733 29.630 5.01 0.00 0.00 4.52
153 154 9.732130 AAAGGCATCTTAGATCTGGTTAATATC 57.268 33.333 5.18 0.00 32.01 1.63
174 175 7.961325 TTTTGAATAAAGACATCCAAAAGGC 57.039 32.000 0.00 0.00 32.12 4.35
175 176 9.323985 TGTTTTTGAATAAAGACATCCAAAAGG 57.676 29.630 0.00 0.00 36.37 3.11
205 206 3.034721 CATGCCTGCTCATGTTTTTGT 57.965 42.857 0.00 0.00 39.10 2.83
246 247 5.273944 TCTATCACTTTCATCATCGTGACG 58.726 41.667 0.00 0.00 38.99 4.35
278 279 2.210961 GTTAGTTTATCCTGCCGCCTC 58.789 52.381 0.00 0.00 0.00 4.70
286 287 6.653020 TCATCTGCATGTGTTAGTTTATCCT 58.347 36.000 0.00 0.00 0.00 3.24
326 327 3.838903 GGACGGAGGGAGTATTATCCAAT 59.161 47.826 0.00 0.00 41.52 3.16
335 336 4.098894 AGTATTTTTGGACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
336 337 2.910977 AGTATTTTTGGACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
337 338 3.629142 AGTATTTTTGGACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
338 339 5.190132 TCATAAGTATTTTTGGACGGAGGGA 59.810 40.000 0.00 0.00 0.00 4.20
339 340 5.433526 TCATAAGTATTTTTGGACGGAGGG 58.566 41.667 0.00 0.00 0.00 4.30
340 341 6.765989 TGATCATAAGTATTTTTGGACGGAGG 59.234 38.462 0.00 0.00 0.00 4.30
341 342 7.710907 TCTGATCATAAGTATTTTTGGACGGAG 59.289 37.037 0.00 0.00 0.00 4.63
342 343 7.561251 TCTGATCATAAGTATTTTTGGACGGA 58.439 34.615 0.00 0.00 0.00 4.69
343 344 7.786178 TCTGATCATAAGTATTTTTGGACGG 57.214 36.000 0.00 0.00 0.00 4.79
430 431 8.802267 CCTTCCTCCAAAAATACTTGTTATCAA 58.198 33.333 0.00 0.00 0.00 2.57
431 432 7.396055 CCCTTCCTCCAAAAATACTTGTTATCA 59.604 37.037 0.00 0.00 0.00 2.15
432 433 7.614192 TCCCTTCCTCCAAAAATACTTGTTATC 59.386 37.037 0.00 0.00 0.00 1.75
433 434 7.475299 TCCCTTCCTCCAAAAATACTTGTTAT 58.525 34.615 0.00 0.00 0.00 1.89
434 435 6.854578 TCCCTTCCTCCAAAAATACTTGTTA 58.145 36.000 0.00 0.00 0.00 2.41
435 436 5.711698 TCCCTTCCTCCAAAAATACTTGTT 58.288 37.500 0.00 0.00 0.00 2.83
436 437 5.162980 ACTCCCTTCCTCCAAAAATACTTGT 60.163 40.000 0.00 0.00 0.00 3.16
437 438 5.325239 ACTCCCTTCCTCCAAAAATACTTG 58.675 41.667 0.00 0.00 0.00 3.16
438 439 5.600669 ACTCCCTTCCTCCAAAAATACTT 57.399 39.130 0.00 0.00 0.00 2.24
439 440 6.217693 ACATACTCCCTTCCTCCAAAAATACT 59.782 38.462 0.00 0.00 0.00 2.12
440 441 6.424032 ACATACTCCCTTCCTCCAAAAATAC 58.576 40.000 0.00 0.00 0.00 1.89
441 442 6.652205 ACATACTCCCTTCCTCCAAAAATA 57.348 37.500 0.00 0.00 0.00 1.40
442 443 5.536497 ACATACTCCCTTCCTCCAAAAAT 57.464 39.130 0.00 0.00 0.00 1.82
443 444 6.216662 TCATACATACTCCCTTCCTCCAAAAA 59.783 38.462 0.00 0.00 0.00 1.94
444 445 5.729229 TCATACATACTCCCTTCCTCCAAAA 59.271 40.000 0.00 0.00 0.00 2.44
445 446 5.285401 TCATACATACTCCCTTCCTCCAAA 58.715 41.667 0.00 0.00 0.00 3.28
446 447 4.890988 TCATACATACTCCCTTCCTCCAA 58.109 43.478 0.00 0.00 0.00 3.53
447 448 4.552883 TCATACATACTCCCTTCCTCCA 57.447 45.455 0.00 0.00 0.00 3.86
448 449 5.888982 TTTCATACATACTCCCTTCCTCC 57.111 43.478 0.00 0.00 0.00 4.30
449 450 5.753921 CGTTTTCATACATACTCCCTTCCTC 59.246 44.000 0.00 0.00 0.00 3.71
450 451 5.424252 TCGTTTTCATACATACTCCCTTCCT 59.576 40.000 0.00 0.00 0.00 3.36
451 452 5.667466 TCGTTTTCATACATACTCCCTTCC 58.333 41.667 0.00 0.00 0.00 3.46
452 453 9.490379 AATATCGTTTTCATACATACTCCCTTC 57.510 33.333 0.00 0.00 0.00 3.46
453 454 9.847224 AAATATCGTTTTCATACATACTCCCTT 57.153 29.630 0.00 0.00 0.00 3.95
491 492 8.247666 AGGGCTCTACGGATATAAATATAACC 57.752 38.462 0.00 0.00 0.00 2.85
536 537 1.656652 AGCCAACACGACTGATATGC 58.343 50.000 0.00 0.00 0.00 3.14
537 538 4.682787 TCTAAGCCAACACGACTGATATG 58.317 43.478 0.00 0.00 0.00 1.78
543 544 6.870971 TTTTAAATCTAAGCCAACACGACT 57.129 33.333 0.00 0.00 0.00 4.18
549 550 6.675026 ACCGAGTTTTTAAATCTAAGCCAAC 58.325 36.000 0.00 0.00 0.00 3.77
551 552 9.321562 CTATACCGAGTTTTTAAATCTAAGCCA 57.678 33.333 0.00 0.00 0.00 4.75
574 575 3.053693 ACAGAGCAGTGAGGAGTCTCTAT 60.054 47.826 0.00 0.00 40.58 1.98
586 587 4.979943 TCTAGAGATTGACAGAGCAGTG 57.020 45.455 0.00 0.00 0.00 3.66
1119 1132 4.410555 AGAGAGGATCATTACCAAACCCTC 59.589 45.833 0.00 0.00 37.82 4.30
1175 1188 2.664835 ATCTAGGAGAGGGCGGGGTG 62.665 65.000 0.00 0.00 0.00 4.61
1204 1217 3.197790 CGGACATGGAAGCGCCTG 61.198 66.667 2.29 0.00 37.63 4.85
1277 1290 4.085055 CGCGTGAATCATGTACATCTAACC 60.085 45.833 5.07 0.00 0.00 2.85
1281 1296 1.860950 GCGCGTGAATCATGTACATCT 59.139 47.619 8.43 0.00 0.00 2.90
1287 1302 1.647545 CCAAGGCGCGTGAATCATGT 61.648 55.000 8.43 0.00 0.00 3.21
1311 1327 4.733523 GCGTTAGGGCATAAAACCATCAAG 60.734 45.833 0.00 0.00 0.00 3.02
1330 1346 1.512156 GATCCAAACCACCACGCGTT 61.512 55.000 10.22 0.00 0.00 4.84
1505 1546 4.142730 GGGACATACTAGTATTACTCGGCG 60.143 50.000 12.87 0.00 0.00 6.46
1565 1612 8.730680 TCTCTAGCAAATTAAATCTGGTTCAAC 58.269 33.333 0.00 0.00 0.00 3.18
1566 1613 8.730680 GTCTCTAGCAAATTAAATCTGGTTCAA 58.269 33.333 0.00 0.00 0.00 2.69
1575 1640 9.553064 CAGATGGTAGTCTCTAGCAAATTAAAT 57.447 33.333 11.64 0.00 0.00 1.40
1659 1725 4.562757 GGAGCACAACACACACCTATTCTA 60.563 45.833 0.00 0.00 0.00 2.10
1667 1733 1.331756 CAAGAGGAGCACAACACACAC 59.668 52.381 0.00 0.00 0.00 3.82
1676 1742 4.613929 CTCTGGCAAGAGGAGCAC 57.386 61.111 10.61 0.00 45.45 4.40
1701 1771 6.839124 TTATGAGGTGATGATTGCAAAACT 57.161 33.333 1.71 0.00 0.00 2.66
1705 1775 8.523915 AAACTATTATGAGGTGATGATTGCAA 57.476 30.769 0.00 0.00 0.00 4.08
1706 1776 8.407832 CAAAACTATTATGAGGTGATGATTGCA 58.592 33.333 0.00 0.00 0.00 4.08
1707 1777 7.380602 GCAAAACTATTATGAGGTGATGATTGC 59.619 37.037 0.00 0.00 0.00 3.56
1708 1778 8.407832 TGCAAAACTATTATGAGGTGATGATTG 58.592 33.333 0.00 0.00 0.00 2.67
1709 1779 8.523915 TGCAAAACTATTATGAGGTGATGATT 57.476 30.769 0.00 0.00 0.00 2.57
1710 1780 8.523915 TTGCAAAACTATTATGAGGTGATGAT 57.476 30.769 0.00 0.00 0.00 2.45
1711 1781 7.936496 TTGCAAAACTATTATGAGGTGATGA 57.064 32.000 0.00 0.00 0.00 2.92
1712 1782 8.407832 TGATTGCAAAACTATTATGAGGTGATG 58.592 33.333 1.71 0.00 0.00 3.07
1713 1783 8.523915 TGATTGCAAAACTATTATGAGGTGAT 57.476 30.769 1.71 0.00 0.00 3.06
1714 1784 7.936496 TGATTGCAAAACTATTATGAGGTGA 57.064 32.000 1.71 0.00 0.00 4.02
1715 1785 8.407832 TGATGATTGCAAAACTATTATGAGGTG 58.592 33.333 1.71 0.00 0.00 4.00
1716 1786 8.408601 GTGATGATTGCAAAACTATTATGAGGT 58.591 33.333 1.71 0.00 0.00 3.85
1717 1787 7.864379 GGTGATGATTGCAAAACTATTATGAGG 59.136 37.037 1.71 0.00 0.00 3.86
1718 1788 8.627403 AGGTGATGATTGCAAAACTATTATGAG 58.373 33.333 1.71 0.00 0.00 2.90
1719 1789 8.523915 AGGTGATGATTGCAAAACTATTATGA 57.476 30.769 1.71 0.00 0.00 2.15
1720 1790 8.627403 AGAGGTGATGATTGCAAAACTATTATG 58.373 33.333 1.71 0.00 0.00 1.90
1721 1791 8.757982 AGAGGTGATGATTGCAAAACTATTAT 57.242 30.769 1.71 0.00 0.00 1.28
1722 1792 8.461222 CAAGAGGTGATGATTGCAAAACTATTA 58.539 33.333 1.71 0.00 0.00 0.98
1723 1793 7.039504 ACAAGAGGTGATGATTGCAAAACTATT 60.040 33.333 1.71 0.00 0.00 1.73
1724 1794 6.435277 ACAAGAGGTGATGATTGCAAAACTAT 59.565 34.615 1.71 0.00 0.00 2.12
1725 1795 5.769662 ACAAGAGGTGATGATTGCAAAACTA 59.230 36.000 1.71 0.00 0.00 2.24
1746 1816 3.540314 AAACATTGCAAGGCAGAACAA 57.460 38.095 11.69 0.00 40.61 2.83
1789 1859 3.380393 TGCCTTATGGTGCCTAGAACTA 58.620 45.455 0.00 0.00 35.27 2.24
1791 1861 2.710096 TGCCTTATGGTGCCTAGAAC 57.290 50.000 0.00 0.00 35.27 3.01
1821 1891 4.864704 TGTAGTCATGCACAACTCAGTA 57.135 40.909 6.11 0.00 0.00 2.74
1859 1929 4.876107 AGACTTATATTGCTGGGAACAACG 59.124 41.667 0.00 0.00 42.06 4.10
1870 1944 7.539712 TGCAACAGAGTAAGACTTATATTGC 57.460 36.000 16.69 16.69 35.52 3.56
1933 2008 4.036971 CGGTGGACACAAAAATTACTTGGA 59.963 41.667 4.69 0.00 0.00 3.53
1948 2025 1.456892 ACACTCAGACCGGTGGACA 60.457 57.895 14.63 0.00 37.72 4.02
1950 2027 1.046472 AACACACTCAGACCGGTGGA 61.046 55.000 14.63 8.87 37.72 4.02
1951 2028 0.880278 CAACACACTCAGACCGGTGG 60.880 60.000 14.63 3.59 37.72 4.61
1952 2029 1.498865 GCAACACACTCAGACCGGTG 61.499 60.000 14.63 0.00 39.13 4.94
2035 2146 9.538508 CTTCAAAAGGAAAATCATCTCAGTTTT 57.461 29.630 0.00 0.00 34.44 2.43
2039 2151 9.355215 CAATCTTCAAAAGGAAAATCATCTCAG 57.645 33.333 0.00 0.00 34.44 3.35
2376 3246 6.318648 TGTCACCAGGATTCAAACATAATAGC 59.681 38.462 0.00 0.00 0.00 2.97
2414 3285 5.741388 CTCAAACAGCAGTCACTAACTTT 57.259 39.130 0.00 0.00 35.45 2.66
2474 3345 3.141398 TGCAGAGCAACTTTCTAACCAG 58.859 45.455 0.00 0.00 34.76 4.00
2484 3355 7.651027 AAAAATATAAGGATGCAGAGCAACT 57.349 32.000 0.00 0.00 43.62 3.16
2527 3398 3.322828 AGAGCATCAAAACAAAGCATGGT 59.677 39.130 0.00 0.00 37.82 3.55
2576 3450 2.299326 ACAGAAGCCAGGCAAGAATT 57.701 45.000 15.80 0.00 0.00 2.17
2607 3481 4.469657 AGAATAGTAGAGGACAGCAGAGG 58.530 47.826 0.00 0.00 0.00 3.69
2617 3491 5.055265 TCACCCAGAGAGAATAGTAGAGG 57.945 47.826 0.00 0.00 0.00 3.69
2635 3509 9.696917 AAACAAAGAAGATCATAAACAATCACC 57.303 29.630 0.00 0.00 0.00 4.02
2737 3611 2.412847 GCTCGGCATTGACAAGTGTTAC 60.413 50.000 0.00 0.00 0.00 2.50
2754 3628 4.216687 CACCTAATACCCTAGAGAAGCTCG 59.783 50.000 0.00 0.00 35.36 5.03
2790 3664 5.650266 ACCAACGAATAATTCCACTATTGCA 59.350 36.000 0.00 0.00 0.00 4.08
2794 3668 6.411376 TGTGACCAACGAATAATTCCACTAT 58.589 36.000 0.00 0.00 0.00 2.12
2840 3714 6.073331 TCGCGCATCAAATTCATATACAATCA 60.073 34.615 8.75 0.00 0.00 2.57
2841 3715 6.247165 GTCGCGCATCAAATTCATATACAATC 59.753 38.462 8.75 0.00 0.00 2.67
2842 3716 6.073058 AGTCGCGCATCAAATTCATATACAAT 60.073 34.615 8.75 0.00 0.00 2.71
2878 3756 1.689258 GGAGGTGGCAAAATATGGGCT 60.689 52.381 0.00 0.00 0.00 5.19
2914 3792 1.202879 AGAAATTGTTGGCCTCCGACA 60.203 47.619 3.32 1.90 45.27 4.35
2940 3818 4.156455 TCCATGATTAGAACAAGAGGGC 57.844 45.455 0.00 0.00 0.00 5.19
2957 3835 3.837355 GGATATGCTCCAGGTTTTCCAT 58.163 45.455 0.00 0.00 44.26 3.41
2975 3853 2.806019 GCTGTCAGATCTGCGATTGGAT 60.806 50.000 18.36 0.00 0.00 3.41
2976 3854 1.472201 GCTGTCAGATCTGCGATTGGA 60.472 52.381 18.36 0.00 0.00 3.53
3000 3878 9.368674 CATAAAAATACCAGCAATTTGACATCA 57.631 29.630 0.00 0.00 0.00 3.07
3011 3889 7.175347 TGGCAATTACATAAAAATACCAGCA 57.825 32.000 0.00 0.00 0.00 4.41
3012 3890 8.485976 TTTGGCAATTACATAAAAATACCAGC 57.514 30.769 0.00 0.00 29.42 4.85
3020 3898 9.814899 CAGGTATCATTTGGCAATTACATAAAA 57.185 29.630 0.00 0.00 0.00 1.52
3021 3899 8.976353 ACAGGTATCATTTGGCAATTACATAAA 58.024 29.630 0.00 0.00 0.00 1.40
3022 3900 8.532186 ACAGGTATCATTTGGCAATTACATAA 57.468 30.769 0.00 0.00 0.00 1.90
3023 3901 9.806448 ATACAGGTATCATTTGGCAATTACATA 57.194 29.630 0.00 0.00 0.00 2.29
3024 3902 8.579006 CATACAGGTATCATTTGGCAATTACAT 58.421 33.333 0.00 0.00 0.00 2.29
3025 3903 7.469870 GCATACAGGTATCATTTGGCAATTACA 60.470 37.037 0.00 0.00 0.00 2.41
3026 3904 6.863126 GCATACAGGTATCATTTGGCAATTAC 59.137 38.462 0.00 1.51 0.00 1.89
3027 3905 6.015519 GGCATACAGGTATCATTTGGCAATTA 60.016 38.462 0.00 0.00 0.00 1.40
3028 3906 5.221501 GGCATACAGGTATCATTTGGCAATT 60.222 40.000 0.00 0.00 0.00 2.32
3029 3907 4.281688 GGCATACAGGTATCATTTGGCAAT 59.718 41.667 0.00 0.00 0.00 3.56
3030 3908 3.636300 GGCATACAGGTATCATTTGGCAA 59.364 43.478 0.00 0.00 0.00 4.52
3031 3909 3.221771 GGCATACAGGTATCATTTGGCA 58.778 45.455 0.00 0.00 0.00 4.92
3032 3910 3.004734 GTGGCATACAGGTATCATTTGGC 59.995 47.826 0.00 0.00 0.00 4.52
3033 3911 4.464008 AGTGGCATACAGGTATCATTTGG 58.536 43.478 0.00 0.00 0.00 3.28
3034 3912 5.125356 TGAGTGGCATACAGGTATCATTTG 58.875 41.667 0.00 0.00 0.00 2.32
3035 3913 5.372343 TGAGTGGCATACAGGTATCATTT 57.628 39.130 0.00 0.00 0.00 2.32
3036 3914 5.372343 TTGAGTGGCATACAGGTATCATT 57.628 39.130 0.00 0.00 0.00 2.57
3037 3915 5.372343 TTTGAGTGGCATACAGGTATCAT 57.628 39.130 0.00 0.00 0.00 2.45
3038 3916 4.835284 TTTGAGTGGCATACAGGTATCA 57.165 40.909 0.00 0.00 0.00 2.15
3144 4022 4.336433 ACGAATAATTCCACTCATGCTTGG 59.664 41.667 6.15 6.15 0.00 3.61
3166 4044 4.062991 ACTTTATTCAGGACGTGACCAAC 58.937 43.478 0.00 0.00 33.71 3.77
3175 4890 8.821894 CACTAAGCATTCTACTTTATTCAGGAC 58.178 37.037 0.00 0.00 0.00 3.85
3215 4930 3.418684 TGTGGGAAAGCTTTCTACTCC 57.581 47.619 32.28 25.57 37.35 3.85
3241 4956 1.406180 GCTTTCTACTCTCCCGGTCTC 59.594 57.143 0.00 0.00 0.00 3.36
3243 4958 1.476477 AGCTTTCTACTCTCCCGGTC 58.524 55.000 0.00 0.00 0.00 4.79
3244 4959 1.939980 AAGCTTTCTACTCTCCCGGT 58.060 50.000 0.00 0.00 0.00 5.28
3245 4960 3.025262 ACTAAGCTTTCTACTCTCCCGG 58.975 50.000 3.20 0.00 0.00 5.73
3246 4961 3.695060 TCACTAAGCTTTCTACTCTCCCG 59.305 47.826 3.20 0.00 0.00 5.14
3247 4962 5.862678 ATCACTAAGCTTTCTACTCTCCC 57.137 43.478 3.20 0.00 0.00 4.30
3280 5048 8.723942 ACTCCTAGATCACACATCAAATTTAC 57.276 34.615 0.00 0.00 0.00 2.01
3282 5050 7.497249 GCTACTCCTAGATCACACATCAAATTT 59.503 37.037 0.00 0.00 0.00 1.82
3308 5076 7.663081 ACTGGTTCTATTAAGTATCCATGCATG 59.337 37.037 20.19 20.19 0.00 4.06
3367 5135 3.256704 TGATAATCAGGGGGTGGATACC 58.743 50.000 0.00 0.00 46.76 2.73
3368 5136 4.559862 CTGATAATCAGGGGGTGGATAC 57.440 50.000 0.00 0.00 40.71 2.24
3406 5174 8.137437 GCATCAGCCAATTATACATAAGTTGTT 58.863 33.333 0.00 0.00 35.69 2.83
3407 5175 7.285172 TGCATCAGCCAATTATACATAAGTTGT 59.715 33.333 0.00 0.00 40.40 3.32
3408 5176 7.650890 TGCATCAGCCAATTATACATAAGTTG 58.349 34.615 0.00 0.00 41.13 3.16
3409 5177 7.822161 TGCATCAGCCAATTATACATAAGTT 57.178 32.000 0.00 0.00 41.13 2.66
3410 5178 8.413309 AATGCATCAGCCAATTATACATAAGT 57.587 30.769 0.00 0.00 41.13 2.24
3411 5179 9.701098 AAAATGCATCAGCCAATTATACATAAG 57.299 29.630 0.00 0.00 41.13 1.73
3412 5180 9.478768 CAAAATGCATCAGCCAATTATACATAA 57.521 29.630 0.00 0.00 41.13 1.90
3413 5181 8.089597 CCAAAATGCATCAGCCAATTATACATA 58.910 33.333 0.00 0.00 41.13 2.29
3414 5182 6.932400 CCAAAATGCATCAGCCAATTATACAT 59.068 34.615 0.00 0.00 41.13 2.29
3415 5183 6.097981 TCCAAAATGCATCAGCCAATTATACA 59.902 34.615 0.00 0.00 41.13 2.29
3416 5184 6.514947 TCCAAAATGCATCAGCCAATTATAC 58.485 36.000 0.00 0.00 41.13 1.47
3417 5185 6.728089 TCCAAAATGCATCAGCCAATTATA 57.272 33.333 0.00 0.00 41.13 0.98
3418 5186 5.617528 TCCAAAATGCATCAGCCAATTAT 57.382 34.783 0.00 0.00 41.13 1.28
3419 5187 5.617528 ATCCAAAATGCATCAGCCAATTA 57.382 34.783 0.00 0.00 41.13 1.40
3420 5188 3.985019 TCCAAAATGCATCAGCCAATT 57.015 38.095 0.00 0.00 41.13 2.32
3421 5189 4.500205 CGTATCCAAAATGCATCAGCCAAT 60.500 41.667 0.00 0.00 41.13 3.16
3422 5190 3.181488 CGTATCCAAAATGCATCAGCCAA 60.181 43.478 0.00 0.00 41.13 4.52
3423 5191 2.358582 CGTATCCAAAATGCATCAGCCA 59.641 45.455 0.00 0.00 41.13 4.75
3424 5192 2.618241 TCGTATCCAAAATGCATCAGCC 59.382 45.455 0.00 0.00 41.13 4.85
3425 5193 3.969117 TCGTATCCAAAATGCATCAGC 57.031 42.857 0.00 0.00 42.57 4.26
3426 5194 6.544038 TGTATCGTATCCAAAATGCATCAG 57.456 37.500 0.00 0.00 0.00 2.90
3427 5195 6.317391 TGTTGTATCGTATCCAAAATGCATCA 59.683 34.615 0.00 0.00 0.00 3.07
3428 5196 6.724263 TGTTGTATCGTATCCAAAATGCATC 58.276 36.000 0.00 0.00 0.00 3.91
3429 5197 6.238731 CCTGTTGTATCGTATCCAAAATGCAT 60.239 38.462 0.00 0.00 0.00 3.96
3430 5198 5.065859 CCTGTTGTATCGTATCCAAAATGCA 59.934 40.000 0.00 0.00 0.00 3.96
3431 5199 5.295787 TCCTGTTGTATCGTATCCAAAATGC 59.704 40.000 0.00 0.00 0.00 3.56
3432 5200 6.238374 GGTCCTGTTGTATCGTATCCAAAATG 60.238 42.308 0.00 0.00 0.00 2.32
3433 5201 5.820947 GGTCCTGTTGTATCGTATCCAAAAT 59.179 40.000 0.00 0.00 0.00 1.82
3434 5202 5.180271 GGTCCTGTTGTATCGTATCCAAAA 58.820 41.667 0.00 0.00 0.00 2.44
3435 5203 4.383335 GGGTCCTGTTGTATCGTATCCAAA 60.383 45.833 0.00 0.00 0.00 3.28
3436 5204 3.133362 GGGTCCTGTTGTATCGTATCCAA 59.867 47.826 0.00 0.00 0.00 3.53
3437 5205 2.696707 GGGTCCTGTTGTATCGTATCCA 59.303 50.000 0.00 0.00 0.00 3.41
3438 5206 2.036862 GGGGTCCTGTTGTATCGTATCC 59.963 54.545 0.00 0.00 0.00 2.59
3439 5207 2.963782 AGGGGTCCTGTTGTATCGTATC 59.036 50.000 0.00 0.00 29.57 2.24
3440 5208 2.963782 GAGGGGTCCTGTTGTATCGTAT 59.036 50.000 0.00 0.00 31.76 3.06
3441 5209 2.291735 TGAGGGGTCCTGTTGTATCGTA 60.292 50.000 0.00 0.00 31.76 3.43
3442 5210 1.192428 GAGGGGTCCTGTTGTATCGT 58.808 55.000 0.00 0.00 31.76 3.73
3443 5211 1.191535 TGAGGGGTCCTGTTGTATCG 58.808 55.000 0.00 0.00 31.76 2.92
3444 5212 4.020128 GGATATGAGGGGTCCTGTTGTATC 60.020 50.000 0.00 0.00 31.76 2.24
3445 5213 3.910627 GGATATGAGGGGTCCTGTTGTAT 59.089 47.826 0.00 0.00 31.76 2.29
3446 5214 3.314693 GGATATGAGGGGTCCTGTTGTA 58.685 50.000 0.00 0.00 31.76 2.41
3447 5215 2.127708 GGATATGAGGGGTCCTGTTGT 58.872 52.381 0.00 0.00 31.76 3.32
3448 5216 1.070758 CGGATATGAGGGGTCCTGTTG 59.929 57.143 0.00 0.00 31.76 3.33
3449 5217 1.344087 ACGGATATGAGGGGTCCTGTT 60.344 52.381 0.00 0.00 31.76 3.16
3450 5218 0.264955 ACGGATATGAGGGGTCCTGT 59.735 55.000 0.00 0.00 31.76 4.00
3451 5219 0.969894 GACGGATATGAGGGGTCCTG 59.030 60.000 0.00 0.00 31.76 3.86
3452 5220 0.178929 GGACGGATATGAGGGGTCCT 60.179 60.000 1.44 0.00 42.98 3.85
3453 5221 0.178929 AGGACGGATATGAGGGGTCC 60.179 60.000 0.35 0.35 45.87 4.46
3454 5222 2.599408 TAGGACGGATATGAGGGGTC 57.401 55.000 0.00 0.00 0.00 4.46
3455 5223 2.970640 GTTTAGGACGGATATGAGGGGT 59.029 50.000 0.00 0.00 0.00 4.95
3456 5224 2.969950 TGTTTAGGACGGATATGAGGGG 59.030 50.000 0.00 0.00 0.00 4.79
3457 5225 4.891992 ATGTTTAGGACGGATATGAGGG 57.108 45.455 0.00 0.00 0.00 4.30
3458 5226 6.341316 CCATATGTTTAGGACGGATATGAGG 58.659 44.000 1.24 0.00 31.23 3.86
3459 5227 6.341316 CCCATATGTTTAGGACGGATATGAG 58.659 44.000 1.24 0.00 31.23 2.90
3460 5228 5.338056 GCCCATATGTTTAGGACGGATATGA 60.338 44.000 1.24 0.00 31.23 2.15
3461 5229 4.876107 GCCCATATGTTTAGGACGGATATG 59.124 45.833 1.24 0.00 30.24 1.78
3462 5230 4.382685 CGCCCATATGTTTAGGACGGATAT 60.383 45.833 1.24 0.00 0.00 1.63
3463 5231 3.056393 CGCCCATATGTTTAGGACGGATA 60.056 47.826 1.24 0.00 0.00 2.59
3464 5232 2.289444 CGCCCATATGTTTAGGACGGAT 60.289 50.000 1.24 0.00 0.00 4.18
3465 5233 1.069513 CGCCCATATGTTTAGGACGGA 59.930 52.381 1.24 0.00 0.00 4.69
3466 5234 1.508632 CGCCCATATGTTTAGGACGG 58.491 55.000 1.24 0.00 0.00 4.79
3467 5235 1.508632 CCGCCCATATGTTTAGGACG 58.491 55.000 1.24 4.29 0.00 4.79
3468 5236 1.892209 CCCGCCCATATGTTTAGGAC 58.108 55.000 1.24 0.00 0.00 3.85
3469 5237 0.109723 GCCCGCCCATATGTTTAGGA 59.890 55.000 1.24 0.00 0.00 2.94
3470 5238 0.110486 AGCCCGCCCATATGTTTAGG 59.890 55.000 1.24 0.00 0.00 2.69
3471 5239 1.202758 TCAGCCCGCCCATATGTTTAG 60.203 52.381 1.24 0.00 0.00 1.85
3472 5240 0.840617 TCAGCCCGCCCATATGTTTA 59.159 50.000 1.24 0.00 0.00 2.01
3473 5241 0.751643 GTCAGCCCGCCCATATGTTT 60.752 55.000 1.24 0.00 0.00 2.83
3474 5242 1.152963 GTCAGCCCGCCCATATGTT 60.153 57.895 1.24 0.00 0.00 2.71
3475 5243 2.510906 GTCAGCCCGCCCATATGT 59.489 61.111 1.24 0.00 0.00 2.29
3476 5244 2.281761 GGTCAGCCCGCCCATATG 60.282 66.667 0.00 0.00 0.00 1.78
3487 5255 2.332654 AATTTCGCCACCGGTCAGC 61.333 57.895 2.59 10.57 34.56 4.26
3488 5256 1.501741 CAATTTCGCCACCGGTCAG 59.498 57.895 2.59 0.00 34.56 3.51
3489 5257 2.622011 GCAATTTCGCCACCGGTCA 61.622 57.895 2.59 0.00 34.56 4.02
3490 5258 2.178273 GCAATTTCGCCACCGGTC 59.822 61.111 2.59 0.00 34.56 4.79
3498 5266 1.374125 GGTTGGGTGGCAATTTCGC 60.374 57.895 0.00 0.00 0.00 4.70
3499 5267 1.080839 CGGTTGGGTGGCAATTTCG 60.081 57.895 0.00 0.00 0.00 3.46
3500 5268 1.374125 GCGGTTGGGTGGCAATTTC 60.374 57.895 0.00 0.00 0.00 2.17
3501 5269 2.740438 GCGGTTGGGTGGCAATTT 59.260 55.556 0.00 0.00 0.00 1.82
3502 5270 3.679738 CGCGGTTGGGTGGCAATT 61.680 61.111 0.00 0.00 0.00 2.32
3512 5280 2.559330 GTTTACCAGCCGCGGTTG 59.441 61.111 32.41 32.41 40.67 3.77
3513 5281 2.670592 GGTTTACCAGCCGCGGTT 60.671 61.111 28.70 20.13 40.67 4.44
3514 5282 3.943691 TGGTTTACCAGCCGCGGT 61.944 61.111 28.70 11.01 42.01 5.68
3522 5290 1.033574 CGTTTTGGCCTGGTTTACCA 58.966 50.000 3.32 1.01 45.30 3.25
3523 5291 1.034356 ACGTTTTGGCCTGGTTTACC 58.966 50.000 3.32 0.00 0.00 2.85
3524 5292 2.861335 CAAACGTTTTGGCCTGGTTTAC 59.139 45.455 11.66 0.00 30.35 2.01
3525 5293 2.159085 CCAAACGTTTTGGCCTGGTTTA 60.159 45.455 11.66 0.00 32.18 2.01
3526 5294 1.406205 CCAAACGTTTTGGCCTGGTTT 60.406 47.619 11.66 4.41 32.18 3.27
3527 5295 0.176910 CCAAACGTTTTGGCCTGGTT 59.823 50.000 11.66 0.00 32.18 3.67
3528 5296 0.684805 TCCAAACGTTTTGGCCTGGT 60.685 50.000 11.66 0.00 39.38 4.00
3529 5297 0.461961 TTCCAAACGTTTTGGCCTGG 59.538 50.000 11.66 9.50 39.38 4.45
3530 5298 2.403259 GATTCCAAACGTTTTGGCCTG 58.597 47.619 11.66 0.00 39.38 4.85
3531 5299 1.000717 CGATTCCAAACGTTTTGGCCT 60.001 47.619 11.66 7.00 39.38 5.19
3532 5300 1.414378 CGATTCCAAACGTTTTGGCC 58.586 50.000 11.66 0.00 39.38 5.36
3533 5301 0.781787 GCGATTCCAAACGTTTTGGC 59.218 50.000 11.66 6.24 39.38 4.52
3534 5302 2.126914 TGCGATTCCAAACGTTTTGG 57.873 45.000 11.66 15.70 40.87 3.28
3535 5303 3.361644 CAGATGCGATTCCAAACGTTTTG 59.638 43.478 11.66 8.43 0.00 2.44
3536 5304 3.564511 CAGATGCGATTCCAAACGTTTT 58.435 40.909 11.66 0.00 0.00 2.43
3537 5305 2.095263 CCAGATGCGATTCCAAACGTTT 60.095 45.455 7.96 7.96 0.00 3.60
3538 5306 1.468520 CCAGATGCGATTCCAAACGTT 59.531 47.619 0.00 0.00 0.00 3.99
3539 5307 1.086696 CCAGATGCGATTCCAAACGT 58.913 50.000 0.00 0.00 0.00 3.99
3540 5308 1.062587 GTCCAGATGCGATTCCAAACG 59.937 52.381 0.00 0.00 0.00 3.60
3541 5309 1.062587 CGTCCAGATGCGATTCCAAAC 59.937 52.381 0.00 0.00 0.00 2.93
3542 5310 1.368641 CGTCCAGATGCGATTCCAAA 58.631 50.000 0.00 0.00 0.00 3.28
3543 5311 1.089481 GCGTCCAGATGCGATTCCAA 61.089 55.000 0.00 0.00 33.23 3.53
3544 5312 1.521457 GCGTCCAGATGCGATTCCA 60.521 57.895 0.00 0.00 33.23 3.53
3545 5313 3.324035 GCGTCCAGATGCGATTCC 58.676 61.111 0.00 0.00 33.23 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.