Multiple sequence alignment - TraesCS5A01G406100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G406100 chr5A 100.000 4220 0 0 1 4220 597689341 597685122 0.000000e+00 7793.0
1 TraesCS5A01G406100 chr5A 83.478 115 6 7 527 628 378505421 378505307 1.250000e-15 95.3
2 TraesCS5A01G406100 chr5B 93.296 2655 132 22 634 3271 586360437 586357812 0.000000e+00 3875.0
3 TraesCS5A01G406100 chr5B 92.014 288 22 1 3828 4115 253186864 253187150 1.830000e-108 403.0
4 TraesCS5A01G406100 chr5B 92.014 288 22 1 3828 4115 520851043 520851329 1.830000e-108 403.0
5 TraesCS5A01G406100 chr5B 88.889 288 21 5 3828 4115 585477793 585478069 1.120000e-90 344.0
6 TraesCS5A01G406100 chr5B 90.686 204 17 2 3371 3572 585477366 585477569 1.930000e-68 270.0
7 TraesCS5A01G406100 chr5B 90.640 203 18 1 3371 3572 253186438 253186640 6.950000e-68 268.0
8 TraesCS5A01G406100 chr5B 88.571 210 21 3 3365 3572 520850611 520850819 7.000000e-63 252.0
9 TraesCS5A01G406100 chr5B 94.656 131 7 0 1 131 586433232 586433102 1.990000e-48 204.0
10 TraesCS5A01G406100 chr5B 84.783 184 14 8 3573 3754 585477597 585477768 5.610000e-39 172.0
11 TraesCS5A01G406100 chr5B 84.239 184 15 8 3573 3754 520850847 520851018 2.610000e-37 167.0
12 TraesCS5A01G406100 chr5B 83.333 186 13 11 3573 3754 253186668 253186839 5.650000e-34 156.0
13 TraesCS5A01G406100 chr5B 81.667 120 8 7 521 626 447470826 447470945 2.090000e-13 87.9
14 TraesCS5A01G406100 chr5B 91.525 59 5 0 68 126 529540622 529540564 9.720000e-12 82.4
15 TraesCS5A01G406100 chr5B 100.000 31 0 0 3792 3822 253186839 253186869 1.640000e-04 58.4
16 TraesCS5A01G406100 chr5B 100.000 31 0 0 3792 3822 520851018 520851048 1.640000e-04 58.4
17 TraesCS5A01G406100 chr5B 100.000 31 0 0 3792 3822 585477768 585477798 1.640000e-04 58.4
18 TraesCS5A01G406100 chr5B 100.000 29 0 0 99 127 586432983 586432955 2.000000e-03 54.7
19 TraesCS5A01G406100 chr5D 95.476 1282 49 8 1876 3149 478594525 478595805 0.000000e+00 2037.0
20 TraesCS5A01G406100 chr5D 92.048 503 38 2 1206 1707 478590698 478591199 0.000000e+00 706.0
21 TraesCS5A01G406100 chr5D 89.861 503 49 2 1206 1707 478560121 478560622 0.000000e+00 645.0
22 TraesCS5A01G406100 chr5D 84.864 588 58 20 624 1210 478511322 478511879 7.920000e-157 564.0
23 TraesCS5A01G406100 chr5D 75.844 770 158 22 2201 2956 9102998 9103753 2.400000e-97 366.0
24 TraesCS5A01G406100 chr5D 79.677 310 36 12 224 532 478511041 478511324 9.250000e-47 198.0
25 TraesCS5A01G406100 chr5D 94.118 119 6 1 1715 1833 478594411 478594528 3.350000e-41 180.0
26 TraesCS5A01G406100 chr2D 89.976 838 58 7 3363 4198 533209139 533208326 0.000000e+00 1059.0
27 TraesCS5A01G406100 chr2D 76.602 1919 394 45 1154 3040 472470512 472472407 0.000000e+00 1005.0
28 TraesCS5A01G406100 chr2D 76.305 1916 379 55 1152 3040 472468934 472467067 0.000000e+00 953.0
29 TraesCS5A01G406100 chr2D 87.528 441 40 8 3352 3789 533209567 533209139 2.930000e-136 496.0
30 TraesCS5A01G406100 chr2D 84.615 65 10 0 63 127 509940499 509940563 9.790000e-07 65.8
31 TraesCS5A01G406100 chr2B 76.735 1960 412 36 1100 3040 551637829 551639763 0.000000e+00 1053.0
32 TraesCS5A01G406100 chr2B 77.669 1630 304 47 1436 3040 551634970 551633376 0.000000e+00 939.0
33 TraesCS5A01G406100 chr2B 77.406 239 38 15 1445 1676 114644142 114644371 1.230000e-25 128.0
34 TraesCS5A01G406100 chr2B 76.613 248 45 11 1445 1687 114549341 114549580 1.590000e-24 124.0
35 TraesCS5A01G406100 chr2B 75.636 275 52 13 1419 1687 114487243 114487508 5.730000e-24 122.0
36 TraesCS5A01G406100 chr2B 85.470 117 7 5 529 636 373290391 373290276 3.450000e-21 113.0
37 TraesCS5A01G406100 chr2B 83.478 115 6 1 524 625 248157793 248157907 1.250000e-15 95.3
38 TraesCS5A01G406100 chr2B 83.036 112 6 7 527 625 591515399 591515288 5.810000e-14 89.8
39 TraesCS5A01G406100 chr2A 76.337 1944 392 53 1139 3040 613991496 613993413 0.000000e+00 979.0
40 TraesCS5A01G406100 chr2A 76.200 1916 377 61 1154 3040 613989728 613987863 0.000000e+00 939.0
41 TraesCS5A01G406100 chr2A 92.937 269 17 2 3828 4096 142694144 142693878 1.420000e-104 390.0
42 TraesCS5A01G406100 chr2A 88.636 176 12 1 3573 3748 142694342 142694175 1.540000e-49 207.0
43 TraesCS5A01G406100 chr2A 92.308 130 10 0 4088 4217 142693694 142693565 7.210000e-43 185.0
44 TraesCS5A01G406100 chr2A 76.613 248 45 11 1445 1687 74776160 74776399 1.590000e-24 124.0
45 TraesCS5A01G406100 chr2A 98.000 50 1 0 576 625 227627475 227627426 2.090000e-13 87.9
46 TraesCS5A01G406100 chr2A 96.000 50 2 0 526 575 377610874 377610825 9.720000e-12 82.4
47 TraesCS5A01G406100 chr2A 85.075 67 7 3 78 141 280610593 280610659 9.790000e-07 65.8
48 TraesCS5A01G406100 chr2A 100.000 31 0 0 3792 3822 142694169 142694139 1.640000e-04 58.4
49 TraesCS5A01G406100 chr1B 74.928 1727 371 50 1329 3020 266109783 266111482 0.000000e+00 734.0
50 TraesCS5A01G406100 chr1A 75.125 1604 346 42 1436 3012 238672001 238673578 0.000000e+00 702.0
51 TraesCS5A01G406100 chr1A 81.982 111 7 2 528 625 80309016 80309126 9.720000e-12 82.4
52 TraesCS5A01G406100 chr6D 74.268 1741 378 53 1329 3022 86721579 86723296 0.000000e+00 669.0
53 TraesCS5A01G406100 chr6D 95.833 48 2 0 528 575 206918474 206918427 1.260000e-10 78.7
54 TraesCS5A01G406100 chr3A 93.095 391 23 4 3828 4217 20392535 20392922 1.700000e-158 569.0
55 TraesCS5A01G406100 chr3A 82.957 399 30 13 3378 3748 20392116 20392504 4.070000e-85 326.0
56 TraesCS5A01G406100 chr3A 100.000 31 0 0 3792 3822 20392510 20392540 1.640000e-04 58.4
57 TraesCS5A01G406100 chr7B 91.282 390 33 1 3828 4217 667283054 667283442 8.030000e-147 531.0
58 TraesCS5A01G406100 chr7B 87.597 258 19 5 3576 3833 457258608 457258852 1.920000e-73 287.0
59 TraesCS5A01G406100 chr7B 90.686 204 18 1 3370 3572 667282627 667282830 1.930000e-68 270.0
60 TraesCS5A01G406100 chr7B 84.783 184 14 8 3573 3754 667282858 667283029 5.610000e-39 172.0
61 TraesCS5A01G406100 chr7B 83.636 110 5 1 529 625 58655895 58656004 1.620000e-14 91.6
62 TraesCS5A01G406100 chr7B 94.000 50 3 0 526 575 515978113 515978064 4.520000e-10 76.8
63 TraesCS5A01G406100 chr7B 100.000 31 0 0 3792 3822 667283029 667283059 1.640000e-04 58.4
64 TraesCS5A01G406100 chr7A 91.049 391 33 2 3828 4217 506277546 506277157 1.040000e-145 527.0
65 TraesCS5A01G406100 chr7A 73.637 1449 319 50 1322 2731 49991006 49989582 6.300000e-138 501.0
66 TraesCS5A01G406100 chr7A 89.744 390 39 1 3828 4217 620402409 620402797 8.150000e-137 497.0
67 TraesCS5A01G406100 chr7A 71.186 1416 342 51 1328 2716 49986836 49985460 1.150000e-75 294.0
68 TraesCS5A01G406100 chr7A 88.839 224 20 3 3352 3572 506277991 506277770 1.930000e-68 270.0
69 TraesCS5A01G406100 chr7A 100.000 31 0 0 3792 3822 620402384 620402414 1.640000e-04 58.4
70 TraesCS5A01G406100 chr3B 74.054 1295 285 39 1329 2599 576049438 576050705 2.280000e-132 483.0
71 TraesCS5A01G406100 chr3B 97.872 47 1 0 529 575 805100134 805100088 9.720000e-12 82.4
72 TraesCS5A01G406100 chr3B 86.154 65 6 3 80 141 6164536 6164472 2.720000e-07 67.6
73 TraesCS5A01G406100 chr4A 73.118 1514 338 52 1322 2793 662202225 662200739 1.060000e-130 477.0
74 TraesCS5A01G406100 chr4A 82.456 114 7 1 526 626 448105941 448105828 2.090000e-13 87.9
75 TraesCS5A01G406100 chr7D 72.897 1450 328 51 1322 2731 47454242 47455666 1.390000e-119 440.0
76 TraesCS5A01G406100 chr7D 94.286 35 2 0 93 127 439997335 439997301 2.000000e-03 54.7
77 TraesCS5A01G406100 chr4B 88.462 208 21 3 3361 3566 79254614 79254820 9.060000e-62 248.0
78 TraesCS5A01G406100 chr4B 80.992 121 9 2 523 629 416442716 416442596 2.700000e-12 84.2
79 TraesCS5A01G406100 chr6A 85.714 98 7 3 528 625 97392349 97392439 3.470000e-16 97.1
80 TraesCS5A01G406100 chr6B 96.364 55 2 0 576 630 407163569 407163623 1.620000e-14 91.6
81 TraesCS5A01G406100 chr1D 84.211 76 10 2 552 627 275620912 275620839 5.850000e-09 73.1
82 TraesCS5A01G406100 chr4D 87.755 49 6 0 79 127 336538861 336538813 1.640000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G406100 chr5A 597685122 597689341 4219 True 7793.000000 7793 100.000000 1 4220 1 chr5A.!!$R2 4219
1 TraesCS5A01G406100 chr5B 586357812 586360437 2625 True 3875.000000 3875 93.296000 634 3271 1 chr5B.!!$R2 2637
2 TraesCS5A01G406100 chr5B 253186438 253187150 712 False 221.350000 403 91.496750 3371 4115 4 chr5B.!!$F2 744
3 TraesCS5A01G406100 chr5B 520850611 520851329 718 False 220.100000 403 91.206000 3365 4115 4 chr5B.!!$F3 750
4 TraesCS5A01G406100 chr5B 585477366 585478069 703 False 211.100000 344 91.089500 3371 4115 4 chr5B.!!$F4 744
5 TraesCS5A01G406100 chr5D 478590698 478595805 5107 False 974.333333 2037 93.880667 1206 3149 3 chr5D.!!$F4 1943
6 TraesCS5A01G406100 chr5D 478560121 478560622 501 False 645.000000 645 89.861000 1206 1707 1 chr5D.!!$F2 501
7 TraesCS5A01G406100 chr5D 478511041 478511879 838 False 381.000000 564 82.270500 224 1210 2 chr5D.!!$F3 986
8 TraesCS5A01G406100 chr5D 9102998 9103753 755 False 366.000000 366 75.844000 2201 2956 1 chr5D.!!$F1 755
9 TraesCS5A01G406100 chr2D 472470512 472472407 1895 False 1005.000000 1005 76.602000 1154 3040 1 chr2D.!!$F1 1886
10 TraesCS5A01G406100 chr2D 472467067 472468934 1867 True 953.000000 953 76.305000 1152 3040 1 chr2D.!!$R1 1888
11 TraesCS5A01G406100 chr2D 533208326 533209567 1241 True 777.500000 1059 88.752000 3352 4198 2 chr2D.!!$R2 846
12 TraesCS5A01G406100 chr2B 551637829 551639763 1934 False 1053.000000 1053 76.735000 1100 3040 1 chr2B.!!$F5 1940
13 TraesCS5A01G406100 chr2B 551633376 551634970 1594 True 939.000000 939 77.669000 1436 3040 1 chr2B.!!$R2 1604
14 TraesCS5A01G406100 chr2A 613991496 613993413 1917 False 979.000000 979 76.337000 1139 3040 1 chr2A.!!$F3 1901
15 TraesCS5A01G406100 chr2A 613987863 613989728 1865 True 939.000000 939 76.200000 1154 3040 1 chr2A.!!$R3 1886
16 TraesCS5A01G406100 chr2A 142693565 142694342 777 True 210.100000 390 93.470250 3573 4217 4 chr2A.!!$R4 644
17 TraesCS5A01G406100 chr1B 266109783 266111482 1699 False 734.000000 734 74.928000 1329 3020 1 chr1B.!!$F1 1691
18 TraesCS5A01G406100 chr1A 238672001 238673578 1577 False 702.000000 702 75.125000 1436 3012 1 chr1A.!!$F2 1576
19 TraesCS5A01G406100 chr6D 86721579 86723296 1717 False 669.000000 669 74.268000 1329 3022 1 chr6D.!!$F1 1693
20 TraesCS5A01G406100 chr3A 20392116 20392922 806 False 317.800000 569 92.017333 3378 4217 3 chr3A.!!$F1 839
21 TraesCS5A01G406100 chr7B 667282627 667283442 815 False 257.850000 531 91.687750 3370 4217 4 chr7B.!!$F3 847
22 TraesCS5A01G406100 chr7A 506277157 506277991 834 True 398.500000 527 89.944000 3352 4217 2 chr7A.!!$R2 865
23 TraesCS5A01G406100 chr7A 49985460 49991006 5546 True 397.500000 501 72.411500 1322 2731 2 chr7A.!!$R1 1409
24 TraesCS5A01G406100 chr3B 576049438 576050705 1267 False 483.000000 483 74.054000 1329 2599 1 chr3B.!!$F1 1270
25 TraesCS5A01G406100 chr4A 662200739 662202225 1486 True 477.000000 477 73.118000 1322 2793 1 chr4A.!!$R2 1471
26 TraesCS5A01G406100 chr7D 47454242 47455666 1424 False 440.000000 440 72.897000 1322 2731 1 chr7D.!!$F1 1409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.034089 AAAGCACTCCTACCATGGCC 60.034 55.000 13.04 0.00 0.00 5.36 F
267 269 0.036732 TGCCCTCAAGCTTGATTCGT 59.963 50.000 28.57 0.00 36.46 3.85 F
402 404 0.107800 CATGGAGGCAGTGGAGAGTG 60.108 60.000 0.00 0.00 0.00 3.51 F
857 867 0.168128 GATGGCACGTGCTTAACCAC 59.832 55.000 36.84 20.43 41.70 4.16 F
1770 5032 1.002868 CCCTGGTGTCAGCCAAGAG 60.003 63.158 0.00 0.00 39.61 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1492 1539 0.029567 CGAGCTCTACGCCGAAGATT 59.970 55.000 12.85 0.0 40.39 2.40 R
1504 1551 0.323816 TCTGGATGGTGTCGAGCTCT 60.324 55.000 12.85 0.0 33.14 4.09 R
1777 5039 1.444553 CTCCACGAGCACCTTCGAC 60.445 63.158 2.12 0.0 43.03 4.20 R
1850 5121 1.518133 CGAAGCTCCAGCCGAGAAG 60.518 63.158 2.62 0.0 41.63 2.85 R
3630 7906 0.734889 GCAGACCGAACCAATCCATG 59.265 55.000 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.551385 GATCAATAAAGCACTCCTACCATG 57.449 41.667 0.00 0.00 0.00 3.66
24 25 4.780815 TCAATAAAGCACTCCTACCATGG 58.219 43.478 11.19 11.19 0.00 3.66
25 26 2.710096 TAAAGCACTCCTACCATGGC 57.290 50.000 13.04 0.00 0.00 4.40
26 27 0.034089 AAAGCACTCCTACCATGGCC 60.034 55.000 13.04 0.00 0.00 5.36
27 28 1.207488 AAGCACTCCTACCATGGCCA 61.207 55.000 13.04 8.56 0.00 5.36
28 29 1.452108 GCACTCCTACCATGGCCAC 60.452 63.158 8.16 0.00 0.00 5.01
29 30 1.990424 CACTCCTACCATGGCCACA 59.010 57.895 8.16 0.00 0.00 4.17
30 31 0.548031 CACTCCTACCATGGCCACAT 59.452 55.000 8.16 0.00 37.99 3.21
31 32 0.839946 ACTCCTACCATGGCCACATC 59.160 55.000 8.16 0.00 34.35 3.06
32 33 0.839277 CTCCTACCATGGCCACATCA 59.161 55.000 8.16 0.00 34.35 3.07
33 34 1.422781 CTCCTACCATGGCCACATCAT 59.577 52.381 8.16 0.00 34.35 2.45
34 35 1.421268 TCCTACCATGGCCACATCATC 59.579 52.381 8.16 0.00 34.35 2.92
35 36 1.516161 CTACCATGGCCACATCATCG 58.484 55.000 8.16 0.00 34.35 3.84
36 37 0.108396 TACCATGGCCACATCATCGG 59.892 55.000 8.16 2.42 34.35 4.18
37 38 1.900016 CCATGGCCACATCATCGGG 60.900 63.158 8.16 0.00 34.35 5.14
41 42 4.798433 GCCACATCATCGGGCATA 57.202 55.556 0.00 0.00 46.92 3.14
42 43 2.247790 GCCACATCATCGGGCATAC 58.752 57.895 0.00 0.00 46.92 2.39
43 44 0.250467 GCCACATCATCGGGCATACT 60.250 55.000 0.00 0.00 46.92 2.12
44 45 1.800805 CCACATCATCGGGCATACTC 58.199 55.000 0.00 0.00 0.00 2.59
45 46 1.609061 CCACATCATCGGGCATACTCC 60.609 57.143 0.00 0.00 0.00 3.85
46 47 0.687354 ACATCATCGGGCATACTCCC 59.313 55.000 0.00 0.00 43.02 4.30
47 48 0.979665 CATCATCGGGCATACTCCCT 59.020 55.000 0.00 0.00 44.30 4.20
48 49 1.066573 CATCATCGGGCATACTCCCTC 60.067 57.143 0.00 0.00 44.30 4.30
49 50 0.105709 TCATCGGGCATACTCCCTCA 60.106 55.000 0.00 0.00 44.30 3.86
50 51 0.758734 CATCGGGCATACTCCCTCAA 59.241 55.000 0.00 0.00 44.30 3.02
51 52 1.349026 CATCGGGCATACTCCCTCAAT 59.651 52.381 0.00 0.00 44.30 2.57
52 53 1.507140 TCGGGCATACTCCCTCAATT 58.493 50.000 0.00 0.00 44.30 2.32
53 54 1.843851 TCGGGCATACTCCCTCAATTT 59.156 47.619 0.00 0.00 44.30 1.82
54 55 1.949525 CGGGCATACTCCCTCAATTTG 59.050 52.381 0.00 0.00 44.30 2.32
55 56 2.310538 GGGCATACTCCCTCAATTTGG 58.689 52.381 0.00 0.00 43.13 3.28
56 57 2.310538 GGCATACTCCCTCAATTTGGG 58.689 52.381 6.90 6.90 45.90 4.12
57 58 2.358195 GGCATACTCCCTCAATTTGGGT 60.358 50.000 11.79 0.00 44.84 4.51
58 59 3.365472 GCATACTCCCTCAATTTGGGTT 58.635 45.455 11.79 4.91 44.84 4.11
59 60 3.769300 GCATACTCCCTCAATTTGGGTTT 59.231 43.478 11.79 4.63 44.84 3.27
60 61 4.953579 GCATACTCCCTCAATTTGGGTTTA 59.046 41.667 11.79 6.26 44.84 2.01
61 62 5.598417 GCATACTCCCTCAATTTGGGTTTAT 59.402 40.000 11.79 7.82 44.84 1.40
62 63 6.775629 GCATACTCCCTCAATTTGGGTTTATA 59.224 38.462 11.79 3.47 44.84 0.98
63 64 7.286775 GCATACTCCCTCAATTTGGGTTTATAA 59.713 37.037 11.79 0.00 44.84 0.98
64 65 8.850156 CATACTCCCTCAATTTGGGTTTATAAG 58.150 37.037 11.79 5.06 44.84 1.73
65 66 5.656859 ACTCCCTCAATTTGGGTTTATAAGC 59.343 40.000 11.79 0.00 44.84 3.09
80 81 8.601845 GGTTTATAAGCCAAATTTTGTGAAGT 57.398 30.769 13.07 0.00 0.00 3.01
81 82 9.051679 GGTTTATAAGCCAAATTTTGTGAAGTT 57.948 29.630 13.07 0.00 0.00 2.66
84 85 9.823647 TTATAAGCCAAATTTTGTGAAGTTTGA 57.176 25.926 8.26 0.00 42.03 2.69
85 86 6.667007 AAGCCAAATTTTGTGAAGTTTGAG 57.333 33.333 8.26 2.02 42.03 3.02
86 87 4.571984 AGCCAAATTTTGTGAAGTTTGAGC 59.428 37.500 8.26 9.20 42.03 4.26
87 88 4.332268 GCCAAATTTTGTGAAGTTTGAGCA 59.668 37.500 8.26 0.00 42.03 4.26
88 89 5.163774 GCCAAATTTTGTGAAGTTTGAGCAA 60.164 36.000 8.26 0.00 42.03 3.91
89 90 6.250089 CCAAATTTTGTGAAGTTTGAGCAAC 58.750 36.000 8.26 0.00 42.03 4.17
91 92 7.277539 CCAAATTTTGTGAAGTTTGAGCAACTA 59.722 33.333 8.26 0.00 45.77 2.24
92 93 8.819974 CAAATTTTGTGAAGTTTGAGCAACTAT 58.180 29.630 0.78 0.00 45.77 2.12
97 98 9.719355 TTTGTGAAGTTTGAGCAACTATATAGA 57.281 29.630 16.79 0.00 45.77 1.98
98 99 9.719355 TTGTGAAGTTTGAGCAACTATATAGAA 57.281 29.630 16.79 0.00 45.77 2.10
99 100 9.719355 TGTGAAGTTTGAGCAACTATATAGAAA 57.281 29.630 16.79 2.71 45.77 2.52
136 137 9.254133 CATTTACAATACCAAATGTTTGTGTCA 57.746 29.630 4.92 0.00 37.36 3.58
137 138 9.823647 ATTTACAATACCAAATGTTTGTGTCAA 57.176 25.926 4.92 1.87 36.45 3.18
138 139 9.653287 TTTACAATACCAAATGTTTGTGTCAAA 57.347 25.926 4.92 0.00 36.45 2.69
139 140 7.769272 ACAATACCAAATGTTTGTGTCAAAG 57.231 32.000 4.92 0.00 36.45 2.77
140 141 7.327214 ACAATACCAAATGTTTGTGTCAAAGT 58.673 30.769 4.92 0.00 36.45 2.66
141 142 7.821846 ACAATACCAAATGTTTGTGTCAAAGTT 59.178 29.630 4.92 0.00 36.45 2.66
142 143 8.327429 CAATACCAAATGTTTGTGTCAAAGTTC 58.673 33.333 4.92 0.00 36.45 3.01
143 144 5.788450 ACCAAATGTTTGTGTCAAAGTTCA 58.212 33.333 4.92 0.00 36.45 3.18
144 145 6.405538 ACCAAATGTTTGTGTCAAAGTTCAT 58.594 32.000 4.92 0.00 36.45 2.57
145 146 7.551585 ACCAAATGTTTGTGTCAAAGTTCATA 58.448 30.769 4.92 0.00 36.45 2.15
146 147 8.037758 ACCAAATGTTTGTGTCAAAGTTCATAA 58.962 29.630 4.92 0.00 36.45 1.90
147 148 8.877779 CCAAATGTTTGTGTCAAAGTTCATAAA 58.122 29.630 4.92 0.00 36.45 1.40
148 149 9.904647 CAAATGTTTGTGTCAAAGTTCATAAAG 57.095 29.630 0.00 0.00 33.59 1.85
149 150 9.651913 AAATGTTTGTGTCAAAGTTCATAAAGT 57.348 25.926 0.00 0.00 0.00 2.66
150 151 9.651913 AATGTTTGTGTCAAAGTTCATAAAGTT 57.348 25.926 0.00 0.00 0.00 2.66
151 152 9.651913 ATGTTTGTGTCAAAGTTCATAAAGTTT 57.348 25.926 0.00 0.00 38.31 2.66
210 211 8.531622 TGAACATTTATAAGCCAAATTGTGTG 57.468 30.769 0.00 0.00 0.00 3.82
211 212 8.363390 TGAACATTTATAAGCCAAATTGTGTGA 58.637 29.630 0.00 0.00 0.00 3.58
212 213 9.202273 GAACATTTATAAGCCAAATTGTGTGAA 57.798 29.630 0.00 0.00 0.00 3.18
213 214 8.761575 ACATTTATAAGCCAAATTGTGTGAAG 57.238 30.769 0.00 0.00 0.00 3.02
214 215 8.367156 ACATTTATAAGCCAAATTGTGTGAAGT 58.633 29.630 0.00 0.00 0.00 3.01
215 216 9.206870 CATTTATAAGCCAAATTGTGTGAAGTT 57.793 29.630 0.00 0.00 0.00 2.66
216 217 9.777297 ATTTATAAGCCAAATTGTGTGAAGTTT 57.223 25.926 0.00 0.00 0.00 2.66
217 218 8.586570 TTATAAGCCAAATTGTGTGAAGTTTG 57.413 30.769 0.00 0.00 0.00 2.93
218 219 3.197265 AGCCAAATTGTGTGAAGTTTGC 58.803 40.909 0.00 0.00 31.87 3.68
219 220 2.287644 GCCAAATTGTGTGAAGTTTGCC 59.712 45.455 0.00 0.00 31.87 4.52
220 221 3.529533 CCAAATTGTGTGAAGTTTGCCA 58.470 40.909 0.00 0.00 31.87 4.92
221 222 4.128643 CCAAATTGTGTGAAGTTTGCCAT 58.871 39.130 0.00 0.00 31.87 4.40
222 223 4.211794 CCAAATTGTGTGAAGTTTGCCATC 59.788 41.667 0.00 0.00 31.87 3.51
251 253 4.803426 CAGGAGGTCGTCGCTGCC 62.803 72.222 0.00 0.00 0.00 4.85
256 258 4.373116 GGTCGTCGCTGCCCTCAA 62.373 66.667 0.00 0.00 0.00 3.02
259 261 4.749310 CGTCGCTGCCCTCAAGCT 62.749 66.667 0.00 0.00 0.00 3.74
264 266 1.310933 CGCTGCCCTCAAGCTTGATT 61.311 55.000 28.57 0.00 36.46 2.57
265 267 0.455005 GCTGCCCTCAAGCTTGATTC 59.545 55.000 28.57 19.44 36.46 2.52
267 269 0.036732 TGCCCTCAAGCTTGATTCGT 59.963 50.000 28.57 0.00 36.46 3.85
269 271 1.677217 GCCCTCAAGCTTGATTCGTCT 60.677 52.381 28.57 0.00 36.46 4.18
274 276 2.877786 TCAAGCTTGATTCGTCTGCAAA 59.122 40.909 25.16 0.00 31.01 3.68
276 278 3.549299 AGCTTGATTCGTCTGCAAAAG 57.451 42.857 0.00 0.00 0.00 2.27
288 290 4.654091 TCTGCAAAAGACCTTTCCTTTG 57.346 40.909 0.00 0.00 34.42 2.77
289 291 4.023291 TCTGCAAAAGACCTTTCCTTTGT 58.977 39.130 0.00 0.00 34.42 2.83
290 292 4.114794 CTGCAAAAGACCTTTCCTTTGTG 58.885 43.478 0.00 0.00 34.42 3.33
291 293 3.766591 TGCAAAAGACCTTTCCTTTGTGA 59.233 39.130 0.00 0.00 34.42 3.58
298 300 2.806244 ACCTTTCCTTTGTGATCGAACG 59.194 45.455 0.00 0.00 0.00 3.95
306 308 4.406069 CTTTGTGATCGAACGATTGCAAT 58.594 39.130 12.83 12.83 34.60 3.56
319 321 3.380004 CGATTGCAATAAGGGCCAAGTTA 59.620 43.478 12.97 0.00 0.00 2.24
330 332 2.556559 GGGCCAAGTTACAAATCTGGGA 60.557 50.000 4.39 0.00 0.00 4.37
332 334 3.131046 GGCCAAGTTACAAATCTGGGATG 59.869 47.826 0.00 0.00 0.00 3.51
338 340 2.220653 ACAAATCTGGGATGTGGTGG 57.779 50.000 3.23 0.00 0.00 4.61
339 341 1.710244 ACAAATCTGGGATGTGGTGGA 59.290 47.619 3.23 0.00 0.00 4.02
341 343 1.673767 AATCTGGGATGTGGTGGAGT 58.326 50.000 0.00 0.00 0.00 3.85
347 349 0.110486 GGATGTGGTGGAGTGGTTGT 59.890 55.000 0.00 0.00 0.00 3.32
349 351 2.306847 GATGTGGTGGAGTGGTTGTTT 58.693 47.619 0.00 0.00 0.00 2.83
352 354 0.396417 TGGTGGAGTGGTTGTTTGGG 60.396 55.000 0.00 0.00 0.00 4.12
358 360 1.826487 GTGGTTGTTTGGGAGCCGT 60.826 57.895 0.00 0.00 0.00 5.68
363 365 0.250553 TTGTTTGGGAGCCGTTCGAT 60.251 50.000 0.00 0.00 0.00 3.59
364 366 0.672401 TGTTTGGGAGCCGTTCGATC 60.672 55.000 0.00 0.00 0.00 3.69
365 367 1.447140 TTTGGGAGCCGTTCGATCG 60.447 57.895 9.36 9.36 0.00 3.69
376 378 3.179830 CCGTTCGATCGAAAACAGATCT 58.820 45.455 30.61 0.00 41.59 2.75
380 382 3.426323 TCGATCGAAAACAGATCTGACG 58.574 45.455 29.27 23.78 41.59 4.35
399 401 3.731547 CCATGGAGGCAGTGGAGA 58.268 61.111 5.56 0.00 34.94 3.71
400 402 1.525923 CCATGGAGGCAGTGGAGAG 59.474 63.158 5.56 0.00 34.94 3.20
401 403 1.270414 CCATGGAGGCAGTGGAGAGT 61.270 60.000 5.56 0.00 34.94 3.24
402 404 0.107800 CATGGAGGCAGTGGAGAGTG 60.108 60.000 0.00 0.00 0.00 3.51
403 405 1.270414 ATGGAGGCAGTGGAGAGTGG 61.270 60.000 0.00 0.00 0.00 4.00
404 406 1.610673 GGAGGCAGTGGAGAGTGGA 60.611 63.158 0.00 0.00 0.00 4.02
409 411 2.597805 AGTGGAGAGTGGACGCGT 60.598 61.111 13.85 13.85 0.00 6.01
411 413 2.910479 TGGAGAGTGGACGCGTGT 60.910 61.111 20.70 0.00 0.00 4.49
430 432 1.546476 GTGAAGAGATCAGTCGGGTGT 59.454 52.381 0.00 0.00 39.19 4.16
443 445 2.747446 GTCGGGTGTGTCATAGCATTTT 59.253 45.455 1.07 0.00 0.00 1.82
445 447 2.097466 CGGGTGTGTCATAGCATTTTCC 59.903 50.000 1.07 0.00 0.00 3.13
446 448 2.097466 GGGTGTGTCATAGCATTTTCCG 59.903 50.000 1.07 0.00 0.00 4.30
449 451 4.096382 GGTGTGTCATAGCATTTTCCGAAT 59.904 41.667 0.00 0.00 0.00 3.34
451 453 6.183360 GGTGTGTCATAGCATTTTCCGAATAA 60.183 38.462 0.00 0.00 0.00 1.40
452 454 7.247728 GTGTGTCATAGCATTTTCCGAATAAA 58.752 34.615 0.00 0.00 0.00 1.40
453 455 7.753132 GTGTGTCATAGCATTTTCCGAATAAAA 59.247 33.333 0.00 0.00 33.15 1.52
454 456 8.300286 TGTGTCATAGCATTTTCCGAATAAAAA 58.700 29.630 0.00 0.00 32.42 1.94
455 457 8.798153 GTGTCATAGCATTTTCCGAATAAAAAG 58.202 33.333 0.00 0.00 32.42 2.27
456 458 8.735315 TGTCATAGCATTTTCCGAATAAAAAGA 58.265 29.630 0.00 0.00 32.42 2.52
457 459 9.567848 GTCATAGCATTTTCCGAATAAAAAGAA 57.432 29.630 0.00 0.00 32.42 2.52
462 464 9.541143 AGCATTTTCCGAATAAAAAGAAAGAAA 57.459 25.926 0.00 0.00 32.42 2.52
483 485 2.710096 TCCTTTGACGGATCCCAATC 57.290 50.000 6.06 2.13 0.00 2.67
532 534 0.825410 ACGCCGGAACCACACATATA 59.175 50.000 5.05 0.00 0.00 0.86
533 535 1.214367 CGCCGGAACCACACATATAC 58.786 55.000 5.05 0.00 0.00 1.47
534 536 1.202486 CGCCGGAACCACACATATACT 60.202 52.381 5.05 0.00 0.00 2.12
535 537 2.480845 GCCGGAACCACACATATACTC 58.519 52.381 5.05 0.00 0.00 2.59
536 538 2.805657 GCCGGAACCACACATATACTCC 60.806 54.545 5.05 0.00 0.00 3.85
537 539 2.224209 CCGGAACCACACATATACTCCC 60.224 54.545 0.00 0.00 0.00 4.30
538 540 2.698797 CGGAACCACACATATACTCCCT 59.301 50.000 0.00 0.00 0.00 4.20
539 541 3.243771 CGGAACCACACATATACTCCCTC 60.244 52.174 0.00 0.00 0.00 4.30
540 542 3.967987 GGAACCACACATATACTCCCTCT 59.032 47.826 0.00 0.00 0.00 3.69
541 543 4.202264 GGAACCACACATATACTCCCTCTG 60.202 50.000 0.00 0.00 0.00 3.35
542 544 3.995636 ACCACACATATACTCCCTCTGT 58.004 45.455 0.00 0.00 0.00 3.41
543 545 4.362677 ACCACACATATACTCCCTCTGTT 58.637 43.478 0.00 0.00 0.00 3.16
544 546 4.406003 ACCACACATATACTCCCTCTGTTC 59.594 45.833 0.00 0.00 0.00 3.18
545 547 4.499865 CCACACATATACTCCCTCTGTTCG 60.500 50.000 0.00 0.00 0.00 3.95
546 548 3.637229 ACACATATACTCCCTCTGTTCGG 59.363 47.826 0.00 0.00 0.00 4.30
547 549 3.889538 CACATATACTCCCTCTGTTCGGA 59.110 47.826 0.00 0.00 0.00 4.55
548 550 4.341235 CACATATACTCCCTCTGTTCGGAA 59.659 45.833 0.00 0.00 0.00 4.30
549 551 5.011125 CACATATACTCCCTCTGTTCGGAAT 59.989 44.000 0.00 0.00 0.00 3.01
550 552 5.602978 ACATATACTCCCTCTGTTCGGAATT 59.397 40.000 0.00 0.00 0.00 2.17
551 553 6.781014 ACATATACTCCCTCTGTTCGGAATTA 59.219 38.462 0.00 0.00 0.00 1.40
552 554 3.889520 ACTCCCTCTGTTCGGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
553 555 3.442076 ACTCCCTCTGTTCGGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
554 556 3.838903 ACTCCCTCTGTTCGGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
555 557 4.184629 CTCCCTCTGTTCGGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
556 558 3.581332 TCCCTCTGTTCGGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
557 559 3.933332 CCCTCTGTTCGGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
558 560 3.612860 CCTCTGTTCGGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
559 561 2.991190 TCTGTTCGGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
560 562 2.734606 CTGTTCGGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
561 563 3.132160 TGTTCGGAATTACTTGTCGCAA 58.868 40.909 0.00 0.00 0.00 4.85
562 564 3.560481 TGTTCGGAATTACTTGTCGCAAA 59.440 39.130 0.00 0.00 0.00 3.68
563 565 4.035324 TGTTCGGAATTACTTGTCGCAAAA 59.965 37.500 0.00 0.00 0.00 2.44
564 566 4.815040 TCGGAATTACTTGTCGCAAAAA 57.185 36.364 0.00 0.00 0.00 1.94
565 567 5.365403 TCGGAATTACTTGTCGCAAAAAT 57.635 34.783 0.00 0.00 0.00 1.82
566 568 5.150683 TCGGAATTACTTGTCGCAAAAATG 58.849 37.500 0.00 0.00 0.00 2.32
567 569 5.049336 TCGGAATTACTTGTCGCAAAAATGA 60.049 36.000 0.00 0.00 0.00 2.57
568 570 5.627367 CGGAATTACTTGTCGCAAAAATGAA 59.373 36.000 0.00 0.00 0.00 2.57
569 571 6.307800 CGGAATTACTTGTCGCAAAAATGAAT 59.692 34.615 0.00 0.00 0.00 2.57
570 572 7.447430 GGAATTACTTGTCGCAAAAATGAATG 58.553 34.615 0.00 0.00 0.00 2.67
571 573 7.116233 GGAATTACTTGTCGCAAAAATGAATGT 59.884 33.333 0.00 0.00 0.00 2.71
572 574 9.123709 GAATTACTTGTCGCAAAAATGAATGTA 57.876 29.630 0.00 0.00 0.00 2.29
573 575 9.638239 AATTACTTGTCGCAAAAATGAATGTAT 57.362 25.926 0.00 0.00 0.00 2.29
574 576 8.667987 TTACTTGTCGCAAAAATGAATGTATC 57.332 30.769 0.00 0.00 0.00 2.24
575 577 5.794945 ACTTGTCGCAAAAATGAATGTATCG 59.205 36.000 0.00 0.00 0.00 2.92
576 578 5.289917 TGTCGCAAAAATGAATGTATCGT 57.710 34.783 0.00 0.00 0.00 3.73
577 579 5.694816 TGTCGCAAAAATGAATGTATCGTT 58.305 33.333 0.00 0.00 38.97 3.85
578 580 5.792962 TGTCGCAAAAATGAATGTATCGTTC 59.207 36.000 0.00 0.00 36.22 3.95
579 581 6.021596 GTCGCAAAAATGAATGTATCGTTCT 58.978 36.000 3.88 0.00 36.22 3.01
580 582 7.148557 TGTCGCAAAAATGAATGTATCGTTCTA 60.149 33.333 3.88 0.00 36.22 2.10
581 583 7.370836 GTCGCAAAAATGAATGTATCGTTCTAG 59.629 37.037 3.88 0.00 36.22 2.43
582 584 7.276878 TCGCAAAAATGAATGTATCGTTCTAGA 59.723 33.333 0.00 0.00 36.22 2.43
583 585 8.064222 CGCAAAAATGAATGTATCGTTCTAGAT 58.936 33.333 0.00 0.00 36.22 1.98
597 599 7.246674 TCGTTCTAGATACATCCATTTTTGC 57.753 36.000 0.00 0.00 0.00 3.68
598 600 6.019075 TCGTTCTAGATACATCCATTTTTGCG 60.019 38.462 0.00 0.00 0.00 4.85
599 601 6.019075 CGTTCTAGATACATCCATTTTTGCGA 60.019 38.462 0.00 0.00 0.00 5.10
600 602 6.844696 TCTAGATACATCCATTTTTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
601 603 6.345298 TCTAGATACATCCATTTTTGCGACA 58.655 36.000 0.00 0.00 0.00 4.35
602 604 5.895636 AGATACATCCATTTTTGCGACAA 57.104 34.783 0.00 0.00 0.00 3.18
603 605 6.266168 AGATACATCCATTTTTGCGACAAA 57.734 33.333 1.63 1.63 0.00 2.83
604 606 6.866480 AGATACATCCATTTTTGCGACAAAT 58.134 32.000 5.97 0.00 0.00 2.32
605 607 7.995289 AGATACATCCATTTTTGCGACAAATA 58.005 30.769 5.97 2.85 0.00 1.40
606 608 8.465999 AGATACATCCATTTTTGCGACAAATAA 58.534 29.630 5.97 4.89 0.00 1.40
607 609 9.248291 GATACATCCATTTTTGCGACAAATAAT 57.752 29.630 5.97 6.45 0.00 1.28
608 610 7.903995 ACATCCATTTTTGCGACAAATAATT 57.096 28.000 5.97 0.00 0.00 1.40
609 611 7.962917 ACATCCATTTTTGCGACAAATAATTC 58.037 30.769 5.97 0.00 0.00 2.17
610 612 6.624710 TCCATTTTTGCGACAAATAATTCG 57.375 33.333 5.97 0.00 38.31 3.34
611 613 5.574830 TCCATTTTTGCGACAAATAATTCGG 59.425 36.000 5.97 7.46 35.73 4.30
612 614 5.574830 CCATTTTTGCGACAAATAATTCGGA 59.425 36.000 5.97 0.00 35.73 4.55
613 615 6.090088 CCATTTTTGCGACAAATAATTCGGAA 59.910 34.615 5.97 0.00 42.78 4.30
614 616 6.441099 TTTTTGCGACAAATAATTCGGAAC 57.559 33.333 5.97 0.00 43.92 3.62
674 676 3.074412 ACTTGCCGACCTTTAATGACAG 58.926 45.455 0.00 0.00 0.00 3.51
678 680 4.439057 TGCCGACCTTTAATGACAGATAC 58.561 43.478 0.00 0.00 0.00 2.24
694 696 3.190327 CAGATACAGCAGTCCCGATCTAG 59.810 52.174 0.00 0.00 0.00 2.43
726 728 2.939103 AGTCTGCATTTCTACGCCATTC 59.061 45.455 0.00 0.00 0.00 2.67
802 812 1.228657 ACGAGGCTTGGAAACTTCGC 61.229 55.000 6.71 0.00 0.00 4.70
832 842 3.377172 CCAACCGGGAACAAGATTGATAC 59.623 47.826 6.32 0.00 40.01 2.24
833 843 4.261801 CAACCGGGAACAAGATTGATACT 58.738 43.478 6.32 0.00 0.00 2.12
834 844 4.138487 ACCGGGAACAAGATTGATACTC 57.862 45.455 6.32 0.00 0.00 2.59
835 845 3.118371 ACCGGGAACAAGATTGATACTCC 60.118 47.826 6.32 0.45 0.00 3.85
852 862 1.409064 CTCCTAGATGGCACGTGCTTA 59.591 52.381 36.84 26.71 41.70 3.09
857 867 0.168128 GATGGCACGTGCTTAACCAC 59.832 55.000 36.84 20.43 41.70 4.16
864 874 3.810373 CACGTGCTTAACCACTTGATTC 58.190 45.455 0.82 0.00 37.20 2.52
865 875 3.498397 CACGTGCTTAACCACTTGATTCT 59.502 43.478 0.82 0.00 37.20 2.40
866 876 4.688879 CACGTGCTTAACCACTTGATTCTA 59.311 41.667 0.82 0.00 37.20 2.10
867 877 4.929808 ACGTGCTTAACCACTTGATTCTAG 59.070 41.667 0.00 0.00 33.60 2.43
868 878 5.168569 CGTGCTTAACCACTTGATTCTAGA 58.831 41.667 2.03 0.00 33.60 2.43
870 880 5.062308 GTGCTTAACCACTTGATTCTAGACG 59.938 44.000 2.03 0.00 33.02 4.18
1126 1157 2.665185 GTGTGCTTCGGCTTCGGT 60.665 61.111 0.00 0.00 42.37 4.69
1504 1551 1.270947 ACCAACCAAATCTTCGGCGTA 60.271 47.619 6.85 0.00 0.00 4.42
1639 1698 3.083600 GACCGGCGCGTTCAATGAG 62.084 63.158 8.43 0.00 0.00 2.90
1735 4997 1.221840 GGCGCCTCTGAAGAATGGA 59.778 57.895 22.15 0.00 0.00 3.41
1770 5032 1.002868 CCCTGGTGTCAGCCAAGAG 60.003 63.158 0.00 0.00 39.61 2.85
1850 5121 2.682494 TCAGGTCCCGCCACTACC 60.682 66.667 0.00 0.00 40.61 3.18
2713 6019 1.735376 GCGCCTTCATCCTCGAGGTA 61.735 60.000 30.17 17.58 36.34 3.08
3044 6359 0.386858 CTCTTTCGTCTTGTCGGCGA 60.387 55.000 4.99 4.99 0.00 5.54
3127 6442 4.408182 CGGAGGGAGATGACATAGTTTT 57.592 45.455 0.00 0.00 0.00 2.43
3128 6443 4.372656 CGGAGGGAGATGACATAGTTTTC 58.627 47.826 0.00 0.00 0.00 2.29
3129 6444 4.141937 CGGAGGGAGATGACATAGTTTTCA 60.142 45.833 0.00 0.00 0.00 2.69
3130 6445 5.626809 CGGAGGGAGATGACATAGTTTTCAA 60.627 44.000 0.00 0.00 0.00 2.69
3155 6569 0.032678 AGGACTCGTGAGTTGTGCTG 59.967 55.000 3.69 0.00 42.66 4.41
3170 6584 1.808343 GTGCTGTGCAGATGTTGATCA 59.192 47.619 3.02 0.00 40.08 2.92
3181 6595 2.148916 TGTTGATCAGGTGTCACGAC 57.851 50.000 0.00 0.00 0.00 4.34
3195 6609 5.220815 GGTGTCACGACTAGTATTGGTAGAG 60.221 48.000 0.00 0.00 0.00 2.43
3197 6611 4.575645 GTCACGACTAGTATTGGTAGAGCT 59.424 45.833 0.00 0.00 0.00 4.09
3198 6612 5.757320 GTCACGACTAGTATTGGTAGAGCTA 59.243 44.000 0.00 0.00 0.00 3.32
3214 6628 7.015292 TGGTAGAGCTATAATAACCCTGTTCTG 59.985 40.741 0.00 0.00 0.00 3.02
3226 6640 3.162666 CCCTGTTCTGTGTGTAGTCCTA 58.837 50.000 0.00 0.00 0.00 2.94
3257 6671 4.218852 GGTATAGTTTCCCTGAGATCCTCG 59.781 50.000 0.00 0.00 32.35 4.63
3260 6674 3.917300 AGTTTCCCTGAGATCCTCGTAT 58.083 45.455 0.00 0.00 32.35 3.06
3262 6676 3.595190 TTCCCTGAGATCCTCGTATCA 57.405 47.619 0.00 0.00 32.35 2.15
3272 6686 7.168905 TGAGATCCTCGTATCATACATGTACT 58.831 38.462 7.96 0.00 32.35 2.73
3273 6687 7.119846 TGAGATCCTCGTATCATACATGTACTG 59.880 40.741 7.96 8.15 32.35 2.74
3275 6689 8.101419 AGATCCTCGTATCATACATGTACTGTA 58.899 37.037 7.96 7.37 44.29 2.74
3287 6701 6.308015 ACATGTACTGTATAAGCCCAGAAA 57.692 37.500 0.00 0.00 35.91 2.52
3288 6702 6.717289 ACATGTACTGTATAAGCCCAGAAAA 58.283 36.000 0.00 0.00 35.91 2.29
3289 6703 7.346471 ACATGTACTGTATAAGCCCAGAAAAT 58.654 34.615 0.00 0.00 35.91 1.82
3290 6704 8.491134 ACATGTACTGTATAAGCCCAGAAAATA 58.509 33.333 0.00 0.00 35.91 1.40
3293 6707 8.545472 TGTACTGTATAAGCCCAGAAAATAAGT 58.455 33.333 0.00 0.00 32.93 2.24
3296 6710 8.107095 ACTGTATAAGCCCAGAAAATAAGTTGA 58.893 33.333 0.00 0.00 32.93 3.18
3303 6717 8.773033 AGCCCAGAAAATAAGTTGATATTCAT 57.227 30.769 0.00 0.00 0.00 2.57
3304 6718 9.205513 AGCCCAGAAAATAAGTTGATATTCATT 57.794 29.630 0.00 0.00 0.00 2.57
3305 6719 9.468532 GCCCAGAAAATAAGTTGATATTCATTC 57.531 33.333 0.00 0.00 0.00 2.67
3320 6734 9.358406 TGATATTCATTCTATTGTTTCATGGCT 57.642 29.630 0.00 0.00 0.00 4.75
3323 6737 7.707624 TTCATTCTATTGTTTCATGGCTTCT 57.292 32.000 0.00 0.00 0.00 2.85
3327 6741 7.630242 TTCTATTGTTTCATGGCTTCTTAGG 57.370 36.000 0.00 0.00 0.00 2.69
3328 6742 4.725790 ATTGTTTCATGGCTTCTTAGGC 57.274 40.909 0.00 0.00 46.64 3.93
3354 6768 4.929819 TTTTTACTTGCCCCTGTTTCTC 57.070 40.909 0.00 0.00 0.00 2.87
3355 6769 3.876309 TTTACTTGCCCCTGTTTCTCT 57.124 42.857 0.00 0.00 0.00 3.10
3356 6770 4.986054 TTTACTTGCCCCTGTTTCTCTA 57.014 40.909 0.00 0.00 0.00 2.43
3357 6771 5.514500 TTTACTTGCCCCTGTTTCTCTAT 57.486 39.130 0.00 0.00 0.00 1.98
3358 6772 3.636153 ACTTGCCCCTGTTTCTCTATC 57.364 47.619 0.00 0.00 0.00 2.08
3359 6773 3.185455 ACTTGCCCCTGTTTCTCTATCT 58.815 45.455 0.00 0.00 0.00 1.98
3360 6774 3.198853 ACTTGCCCCTGTTTCTCTATCTC 59.801 47.826 0.00 0.00 0.00 2.75
3361 6775 3.121929 TGCCCCTGTTTCTCTATCTCT 57.878 47.619 0.00 0.00 0.00 3.10
3362 6776 3.454858 TGCCCCTGTTTCTCTATCTCTT 58.545 45.455 0.00 0.00 0.00 2.85
3363 6777 3.452627 TGCCCCTGTTTCTCTATCTCTTC 59.547 47.826 0.00 0.00 0.00 2.87
3364 6778 3.709141 GCCCCTGTTTCTCTATCTCTTCT 59.291 47.826 0.00 0.00 0.00 2.85
3365 6779 4.202212 GCCCCTGTTTCTCTATCTCTTCTC 60.202 50.000 0.00 0.00 0.00 2.87
3366 6780 5.208121 CCCCTGTTTCTCTATCTCTTCTCT 58.792 45.833 0.00 0.00 0.00 3.10
3367 6781 5.068987 CCCCTGTTTCTCTATCTCTTCTCTG 59.931 48.000 0.00 0.00 0.00 3.35
3368 6782 5.451798 CCCTGTTTCTCTATCTCTTCTCTGC 60.452 48.000 0.00 0.00 0.00 4.26
3375 6789 6.057533 TCTCTATCTCTTCTCTGCTTCTCTG 58.942 44.000 0.00 0.00 0.00 3.35
3411 6826 7.110155 ACAATCCAACATTATCTTTCCTACGT 58.890 34.615 0.00 0.00 0.00 3.57
3428 6843 2.804167 TGCACCCAAGCAAACGTG 59.196 55.556 0.00 0.00 42.46 4.49
3429 6844 1.750780 TGCACCCAAGCAAACGTGA 60.751 52.632 0.00 0.00 42.46 4.35
3498 6914 6.758254 TGACAGCCATCATTAATCTAATCGA 58.242 36.000 0.00 0.00 0.00 3.59
3522 6938 8.498358 CGAGATTTGATGTATGCTTAGCAATTA 58.502 33.333 12.08 0.00 43.62 1.40
3579 7855 0.729140 GCGTCCGCAACCAAAGAATG 60.729 55.000 6.82 0.00 41.49 2.67
3623 7899 1.226660 GCATGCAGCGGCGTTATTT 60.227 52.632 14.21 0.00 45.35 1.40
3624 7900 0.801836 GCATGCAGCGGCGTTATTTT 60.802 50.000 14.21 0.00 45.35 1.82
3625 7901 1.627879 CATGCAGCGGCGTTATTTTT 58.372 45.000 9.37 0.00 45.35 1.94
3691 7967 8.990163 AATTAAAAGGGATGATTACGTACCAT 57.010 30.769 8.82 8.82 38.45 3.55
3699 7975 5.971202 GGATGATTACGTACCATGCAAAAAG 59.029 40.000 17.79 0.00 0.00 2.27
3700 7976 6.183360 GGATGATTACGTACCATGCAAAAAGA 60.183 38.462 17.79 0.00 0.00 2.52
3701 7977 6.176975 TGATTACGTACCATGCAAAAAGAG 57.823 37.500 0.00 0.00 0.00 2.85
3702 7978 5.935206 TGATTACGTACCATGCAAAAAGAGA 59.065 36.000 0.00 0.00 0.00 3.10
3703 7979 5.856126 TTACGTACCATGCAAAAAGAGAG 57.144 39.130 0.00 0.00 0.00 3.20
3822 8131 1.532868 GAGGCGGATGCATGTGATTAC 59.467 52.381 2.46 0.00 45.35 1.89
3823 8132 0.235665 GGCGGATGCATGTGATTACG 59.764 55.000 2.46 0.00 45.35 3.18
3824 8133 1.217001 GCGGATGCATGTGATTACGA 58.783 50.000 2.46 0.00 42.15 3.43
3825 8134 1.193203 GCGGATGCATGTGATTACGAG 59.807 52.381 2.46 0.00 42.15 4.18
3826 8135 1.193203 CGGATGCATGTGATTACGAGC 59.807 52.381 2.46 0.00 0.00 5.03
3827 8136 2.487934 GGATGCATGTGATTACGAGCT 58.512 47.619 2.46 0.00 32.46 4.09
3828 8137 2.222678 GGATGCATGTGATTACGAGCTG 59.777 50.000 2.46 0.00 32.46 4.24
3829 8138 2.671130 TGCATGTGATTACGAGCTGA 57.329 45.000 0.00 0.00 32.46 4.26
3830 8139 3.183793 TGCATGTGATTACGAGCTGAT 57.816 42.857 0.00 0.00 32.46 2.90
3831 8140 3.534554 TGCATGTGATTACGAGCTGATT 58.465 40.909 0.00 0.00 32.46 2.57
3832 8141 4.692228 TGCATGTGATTACGAGCTGATTA 58.308 39.130 0.00 0.00 32.46 1.75
3851 8160 6.296026 TGATTAAGGGCTGATTAATTACGCT 58.704 36.000 0.00 0.00 33.94 5.07
3869 8179 2.695359 GCTGACGGTTTGTATTCCTGA 58.305 47.619 0.00 0.00 0.00 3.86
3930 8240 3.370209 GGAGGAGTGCTAAAATTACGGGT 60.370 47.826 0.00 0.00 0.00 5.28
4033 9282 1.466866 CGAGCGATAGTGTTTCACCGA 60.467 52.381 0.00 0.00 34.49 4.69
4035 9284 1.271379 AGCGATAGTGTTTCACCGACA 59.729 47.619 0.00 0.00 34.49 4.35
4060 9310 2.435586 CCCTTGTGCTGCTCCTCG 60.436 66.667 0.00 0.00 0.00 4.63
4119 9966 3.263425 CCAGGCCTTCAAGTCTACCTTTA 59.737 47.826 0.00 0.00 0.00 1.85
4149 10073 1.893544 CTCGCCGTCTCCTATCCTAA 58.106 55.000 0.00 0.00 0.00 2.69
4217 10892 5.011943 TCTGCCATTTTGTTCCTGCTATTTT 59.988 36.000 0.00 0.00 0.00 1.82
4218 10893 4.996122 TGCCATTTTGTTCCTGCTATTTTG 59.004 37.500 0.00 0.00 0.00 2.44
4219 10894 4.996758 GCCATTTTGTTCCTGCTATTTTGT 59.003 37.500 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.555966 GCCATGGTAGGAGTGCTTTATT 58.444 45.455 14.67 0.00 0.00 1.40
7 8 0.034089 GGCCATGGTAGGAGTGCTTT 60.034 55.000 14.67 0.00 0.00 3.51
8 9 1.207488 TGGCCATGGTAGGAGTGCTT 61.207 55.000 14.67 0.00 0.00 3.91
9 10 1.616327 TGGCCATGGTAGGAGTGCT 60.616 57.895 14.67 0.00 0.00 4.40
10 11 1.452108 GTGGCCATGGTAGGAGTGC 60.452 63.158 9.72 0.00 0.00 4.40
11 12 0.548031 ATGTGGCCATGGTAGGAGTG 59.452 55.000 9.72 0.00 0.00 3.51
12 13 0.839946 GATGTGGCCATGGTAGGAGT 59.160 55.000 9.72 0.00 0.00 3.85
13 14 0.839277 TGATGTGGCCATGGTAGGAG 59.161 55.000 9.72 0.00 0.00 3.69
16 17 1.516161 CGATGATGTGGCCATGGTAG 58.484 55.000 9.72 0.00 0.00 3.18
17 18 0.108396 CCGATGATGTGGCCATGGTA 59.892 55.000 9.72 0.00 0.00 3.25
18 19 1.152902 CCGATGATGTGGCCATGGT 60.153 57.895 9.72 0.00 0.00 3.55
19 20 1.900016 CCCGATGATGTGGCCATGG 60.900 63.158 9.72 7.63 0.00 3.66
20 21 2.558286 GCCCGATGATGTGGCCATG 61.558 63.158 9.72 0.00 39.30 3.66
21 22 2.203394 GCCCGATGATGTGGCCAT 60.203 61.111 9.72 0.00 39.30 4.40
22 23 1.704007 TATGCCCGATGATGTGGCCA 61.704 55.000 0.00 0.00 44.72 5.36
23 24 1.073025 TATGCCCGATGATGTGGCC 59.927 57.895 0.00 0.00 44.72 5.36
24 25 0.250467 AGTATGCCCGATGATGTGGC 60.250 55.000 0.00 0.00 45.56 5.01
25 26 1.609061 GGAGTATGCCCGATGATGTGG 60.609 57.143 0.00 0.00 0.00 4.17
26 27 1.609061 GGGAGTATGCCCGATGATGTG 60.609 57.143 0.00 0.00 43.14 3.21
27 28 0.687354 GGGAGTATGCCCGATGATGT 59.313 55.000 0.00 0.00 43.14 3.06
28 29 3.540211 GGGAGTATGCCCGATGATG 57.460 57.895 0.00 0.00 43.14 3.07
45 46 5.930837 TGGCTTATAAACCCAAATTGAGG 57.069 39.130 2.45 0.00 0.00 3.86
52 53 7.509546 TCACAAAATTTGGCTTATAAACCCAA 58.490 30.769 10.71 11.36 36.88 4.12
53 54 7.067496 TCACAAAATTTGGCTTATAAACCCA 57.933 32.000 10.71 1.87 34.12 4.51
54 55 7.659799 ACTTCACAAAATTTGGCTTATAAACCC 59.340 33.333 10.71 0.00 34.12 4.11
55 56 8.601845 ACTTCACAAAATTTGGCTTATAAACC 57.398 30.769 10.71 0.00 34.12 3.27
58 59 9.823647 TCAAACTTCACAAAATTTGGCTTATAA 57.176 25.926 10.71 0.00 33.72 0.98
59 60 9.474920 CTCAAACTTCACAAAATTTGGCTTATA 57.525 29.630 10.71 0.00 33.72 0.98
60 61 7.041848 GCTCAAACTTCACAAAATTTGGCTTAT 60.042 33.333 10.71 0.00 33.72 1.73
61 62 6.257630 GCTCAAACTTCACAAAATTTGGCTTA 59.742 34.615 10.71 0.00 33.72 3.09
62 63 5.065090 GCTCAAACTTCACAAAATTTGGCTT 59.935 36.000 10.71 0.00 33.72 4.35
63 64 4.571984 GCTCAAACTTCACAAAATTTGGCT 59.428 37.500 10.71 0.00 33.72 4.75
64 65 4.332268 TGCTCAAACTTCACAAAATTTGGC 59.668 37.500 10.71 0.58 33.72 4.52
65 66 6.250089 GTTGCTCAAACTTCACAAAATTTGG 58.750 36.000 10.71 0.00 35.75 3.28
110 111 9.254133 TGACACAAACATTTGGTATTGTAAATG 57.746 29.630 9.09 0.00 45.28 2.32
111 112 9.823647 TTGACACAAACATTTGGTATTGTAAAT 57.176 25.926 9.09 0.00 42.34 1.40
112 113 9.653287 TTTGACACAAACATTTGGTATTGTAAA 57.347 25.926 9.09 1.51 42.34 2.01
113 114 9.307121 CTTTGACACAAACATTTGGTATTGTAA 57.693 29.630 9.09 0.00 42.34 2.41
114 115 8.470805 ACTTTGACACAAACATTTGGTATTGTA 58.529 29.630 9.09 0.00 42.34 2.41
115 116 7.327214 ACTTTGACACAAACATTTGGTATTGT 58.673 30.769 9.09 4.07 42.34 2.71
116 117 7.769272 ACTTTGACACAAACATTTGGTATTG 57.231 32.000 9.09 1.08 42.34 1.90
117 118 8.037758 TGAACTTTGACACAAACATTTGGTATT 58.962 29.630 9.09 0.00 42.34 1.89
118 119 7.551585 TGAACTTTGACACAAACATTTGGTAT 58.448 30.769 9.09 0.00 42.34 2.73
119 120 6.925211 TGAACTTTGACACAAACATTTGGTA 58.075 32.000 9.09 0.00 42.34 3.25
120 121 5.788450 TGAACTTTGACACAAACATTTGGT 58.212 33.333 9.09 4.19 42.34 3.67
121 122 6.907206 ATGAACTTTGACACAAACATTTGG 57.093 33.333 9.09 1.26 42.34 3.28
122 123 9.904647 CTTTATGAACTTTGACACAAACATTTG 57.095 29.630 2.77 2.77 43.62 2.32
123 124 9.651913 ACTTTATGAACTTTGACACAAACATTT 57.348 25.926 0.00 0.00 0.00 2.32
124 125 9.651913 AACTTTATGAACTTTGACACAAACATT 57.348 25.926 0.00 0.00 0.00 2.71
125 126 9.651913 AAACTTTATGAACTTTGACACAAACAT 57.348 25.926 0.00 0.00 0.00 2.71
126 127 8.920665 CAAACTTTATGAACTTTGACACAAACA 58.079 29.630 0.00 0.00 0.00 2.83
127 128 9.134734 TCAAACTTTATGAACTTTGACACAAAC 57.865 29.630 2.34 0.00 28.86 2.93
128 129 9.134734 GTCAAACTTTATGAACTTTGACACAAA 57.865 29.630 20.56 0.00 42.20 2.83
129 130 8.519526 AGTCAAACTTTATGAACTTTGACACAA 58.480 29.630 24.14 0.00 43.47 3.33
130 131 8.050778 AGTCAAACTTTATGAACTTTGACACA 57.949 30.769 24.14 0.00 43.47 3.72
131 132 8.911247 AAGTCAAACTTTATGAACTTTGACAC 57.089 30.769 24.14 9.97 43.47 3.67
184 185 9.153721 CACACAATTTGGCTTATAAATGTTCAT 57.846 29.630 0.78 0.00 0.00 2.57
185 186 8.363390 TCACACAATTTGGCTTATAAATGTTCA 58.637 29.630 0.78 0.00 0.00 3.18
186 187 8.755696 TCACACAATTTGGCTTATAAATGTTC 57.244 30.769 0.78 0.00 0.00 3.18
187 188 9.206870 CTTCACACAATTTGGCTTATAAATGTT 57.793 29.630 0.78 0.00 0.00 2.71
188 189 8.367156 ACTTCACACAATTTGGCTTATAAATGT 58.633 29.630 0.78 0.00 0.00 2.71
189 190 8.761575 ACTTCACACAATTTGGCTTATAAATG 57.238 30.769 0.78 0.00 0.00 2.32
190 191 9.777297 AAACTTCACACAATTTGGCTTATAAAT 57.223 25.926 0.78 0.00 0.00 1.40
191 192 9.039870 CAAACTTCACACAATTTGGCTTATAAA 57.960 29.630 0.78 0.00 0.00 1.40
192 193 7.170658 GCAAACTTCACACAATTTGGCTTATAA 59.829 33.333 0.78 0.00 33.55 0.98
193 194 6.644592 GCAAACTTCACACAATTTGGCTTATA 59.355 34.615 0.78 0.00 33.55 0.98
194 195 5.466393 GCAAACTTCACACAATTTGGCTTAT 59.534 36.000 0.78 0.00 33.55 1.73
195 196 4.808364 GCAAACTTCACACAATTTGGCTTA 59.192 37.500 0.78 0.00 33.55 3.09
196 197 3.622612 GCAAACTTCACACAATTTGGCTT 59.377 39.130 0.78 0.00 33.55 4.35
197 198 3.197265 GCAAACTTCACACAATTTGGCT 58.803 40.909 0.78 0.00 33.55 4.75
198 199 2.287644 GGCAAACTTCACACAATTTGGC 59.712 45.455 6.39 6.39 46.14 4.52
199 200 3.529533 TGGCAAACTTCACACAATTTGG 58.470 40.909 0.78 0.00 33.55 3.28
200 201 4.084952 CGATGGCAAACTTCACACAATTTG 60.085 41.667 0.00 0.00 35.57 2.32
201 202 4.050553 CGATGGCAAACTTCACACAATTT 58.949 39.130 0.00 0.00 0.00 1.82
202 203 3.068024 ACGATGGCAAACTTCACACAATT 59.932 39.130 0.00 0.00 0.00 2.32
203 204 2.622942 ACGATGGCAAACTTCACACAAT 59.377 40.909 0.00 0.00 0.00 2.71
204 205 2.020720 ACGATGGCAAACTTCACACAA 58.979 42.857 0.00 0.00 0.00 3.33
205 206 1.674359 ACGATGGCAAACTTCACACA 58.326 45.000 0.00 0.00 0.00 3.72
206 207 2.095919 GGTACGATGGCAAACTTCACAC 60.096 50.000 0.00 0.00 0.00 3.82
207 208 2.147958 GGTACGATGGCAAACTTCACA 58.852 47.619 0.00 0.00 0.00 3.58
208 209 1.467342 GGGTACGATGGCAAACTTCAC 59.533 52.381 0.00 0.00 0.00 3.18
209 210 1.349688 AGGGTACGATGGCAAACTTCA 59.650 47.619 0.00 0.00 0.00 3.02
210 211 2.007608 GAGGGTACGATGGCAAACTTC 58.992 52.381 0.00 0.00 0.00 3.01
211 212 1.674817 CGAGGGTACGATGGCAAACTT 60.675 52.381 0.00 0.00 35.09 2.66
212 213 0.108329 CGAGGGTACGATGGCAAACT 60.108 55.000 0.00 0.00 35.09 2.66
213 214 1.702491 GCGAGGGTACGATGGCAAAC 61.702 60.000 0.00 0.00 35.09 2.93
214 215 1.448893 GCGAGGGTACGATGGCAAA 60.449 57.895 0.00 0.00 35.09 3.68
215 216 2.185867 GCGAGGGTACGATGGCAA 59.814 61.111 0.00 0.00 35.09 4.52
216 217 3.845259 GGCGAGGGTACGATGGCA 61.845 66.667 0.00 0.00 35.09 4.92
217 218 4.603946 GGGCGAGGGTACGATGGC 62.604 72.222 0.00 0.00 35.09 4.40
218 219 3.151710 TGGGCGAGGGTACGATGG 61.152 66.667 0.00 0.00 35.09 3.51
219 220 2.417516 CTGGGCGAGGGTACGATG 59.582 66.667 0.00 0.00 35.09 3.84
220 221 2.838225 CCTGGGCGAGGGTACGAT 60.838 66.667 7.81 0.00 38.36 3.73
221 222 4.051167 TCCTGGGCGAGGGTACGA 62.051 66.667 16.05 0.00 43.06 3.43
222 223 3.528370 CTCCTGGGCGAGGGTACG 61.528 72.222 16.05 0.00 43.06 3.67
240 242 2.811317 CTTGAGGGCAGCGACGAC 60.811 66.667 0.00 0.00 0.00 4.34
242 244 4.749310 AGCTTGAGGGCAGCGACG 62.749 66.667 0.00 0.00 34.17 5.12
244 246 2.189191 ATCAAGCTTGAGGGCAGCGA 62.189 55.000 31.14 8.15 41.08 4.93
251 253 1.396301 GCAGACGAATCAAGCTTGAGG 59.604 52.381 31.14 23.98 41.08 3.86
256 258 3.058639 GTCTTTTGCAGACGAATCAAGCT 60.059 43.478 0.00 0.00 42.82 3.74
267 269 4.654091 CAAAGGAAAGGTCTTTTGCAGA 57.346 40.909 1.89 0.00 41.98 4.26
274 276 4.351874 TCGATCACAAAGGAAAGGTCTT 57.648 40.909 0.00 0.00 0.00 3.01
276 278 3.120649 CGTTCGATCACAAAGGAAAGGTC 60.121 47.826 0.00 0.00 0.00 3.85
283 285 2.159430 TGCAATCGTTCGATCACAAAGG 59.841 45.455 8.14 0.00 0.00 3.11
284 286 3.454042 TGCAATCGTTCGATCACAAAG 57.546 42.857 8.14 0.00 0.00 2.77
287 289 4.033932 CCTTATTGCAATCGTTCGATCACA 59.966 41.667 16.86 7.01 0.00 3.58
288 290 4.518217 CCTTATTGCAATCGTTCGATCAC 58.482 43.478 16.86 4.68 0.00 3.06
289 291 3.559655 CCCTTATTGCAATCGTTCGATCA 59.440 43.478 16.86 0.90 0.00 2.92
290 292 3.607078 GCCCTTATTGCAATCGTTCGATC 60.607 47.826 16.86 0.00 0.00 3.69
291 293 2.290641 GCCCTTATTGCAATCGTTCGAT 59.709 45.455 16.86 1.68 0.00 3.59
298 300 3.893326 AACTTGGCCCTTATTGCAATC 57.107 42.857 16.86 0.30 0.00 2.67
306 308 4.340617 CCAGATTTGTAACTTGGCCCTTA 58.659 43.478 0.00 0.00 0.00 2.69
319 321 1.710244 TCCACCACATCCCAGATTTGT 59.290 47.619 0.00 0.00 0.00 2.83
330 332 2.031120 CAAACAACCACTCCACCACAT 58.969 47.619 0.00 0.00 0.00 3.21
332 334 0.744281 CCAAACAACCACTCCACCAC 59.256 55.000 0.00 0.00 0.00 4.16
338 340 1.515521 CGGCTCCCAAACAACCACTC 61.516 60.000 0.00 0.00 0.00 3.51
339 341 1.528309 CGGCTCCCAAACAACCACT 60.528 57.895 0.00 0.00 0.00 4.00
341 343 1.076632 AACGGCTCCCAAACAACCA 60.077 52.632 0.00 0.00 0.00 3.67
347 349 1.447140 CGATCGAACGGCTCCCAAA 60.447 57.895 10.26 0.00 0.00 3.28
349 351 1.879737 TTTCGATCGAACGGCTCCCA 61.880 55.000 29.15 10.17 33.41 4.37
352 354 1.059264 CTGTTTTCGATCGAACGGCTC 59.941 52.381 29.15 16.96 33.41 4.70
358 360 3.851969 CGTCAGATCTGTTTTCGATCGAA 59.148 43.478 25.96 25.96 41.59 3.71
363 365 1.671850 GGCCGTCAGATCTGTTTTCGA 60.672 52.381 21.92 0.00 0.00 3.71
364 366 0.721718 GGCCGTCAGATCTGTTTTCG 59.278 55.000 21.92 19.36 0.00 3.46
365 367 1.808411 TGGCCGTCAGATCTGTTTTC 58.192 50.000 21.92 10.20 0.00 2.29
391 393 2.126307 CGCGTCCACTCTCCACTG 60.126 66.667 0.00 0.00 0.00 3.66
392 394 2.597805 ACGCGTCCACTCTCCACT 60.598 61.111 5.58 0.00 0.00 4.00
397 399 1.007271 CTTCACACGCGTCCACTCT 60.007 57.895 9.86 0.00 0.00 3.24
398 400 1.004277 CTCTTCACACGCGTCCACTC 61.004 60.000 9.86 0.00 0.00 3.51
399 401 1.007271 CTCTTCACACGCGTCCACT 60.007 57.895 9.86 0.00 0.00 4.00
400 402 0.388649 ATCTCTTCACACGCGTCCAC 60.389 55.000 9.86 0.00 0.00 4.02
401 403 0.109272 GATCTCTTCACACGCGTCCA 60.109 55.000 9.86 0.00 0.00 4.02
402 404 0.109272 TGATCTCTTCACACGCGTCC 60.109 55.000 9.86 0.00 0.00 4.79
403 405 1.263776 CTGATCTCTTCACACGCGTC 58.736 55.000 9.86 0.00 0.00 5.19
404 406 0.598562 ACTGATCTCTTCACACGCGT 59.401 50.000 5.58 5.58 0.00 6.01
409 411 1.546029 CACCCGACTGATCTCTTCACA 59.454 52.381 0.00 0.00 0.00 3.58
411 413 1.546029 CACACCCGACTGATCTCTTCA 59.454 52.381 0.00 0.00 0.00 3.02
430 432 8.735315 TCTTTTTATTCGGAAAATGCTATGACA 58.265 29.630 0.00 0.00 0.00 3.58
449 451 8.688151 TCCGTCAAAGGATTTTCTTTCTTTTTA 58.312 29.630 0.00 0.00 35.03 1.52
451 453 7.107639 TCCGTCAAAGGATTTTCTTTCTTTT 57.892 32.000 0.00 0.00 35.03 2.27
452 454 6.709018 TCCGTCAAAGGATTTTCTTTCTTT 57.291 33.333 0.00 0.00 35.03 2.52
464 466 2.092968 CAGATTGGGATCCGTCAAAGGA 60.093 50.000 5.45 0.00 45.54 3.36
465 467 2.092968 TCAGATTGGGATCCGTCAAAGG 60.093 50.000 5.45 0.39 32.44 3.11
466 468 3.266510 TCAGATTGGGATCCGTCAAAG 57.733 47.619 5.45 1.08 32.44 2.77
467 469 3.712016 TTCAGATTGGGATCCGTCAAA 57.288 42.857 5.45 0.00 32.44 2.69
471 473 4.455606 GAAGAATTCAGATTGGGATCCGT 58.544 43.478 8.44 0.00 46.62 4.69
483 485 5.237344 ACGTCAAGGACAAAGAAGAATTCAG 59.763 40.000 8.44 0.00 39.01 3.02
515 517 2.480845 GAGTATATGTGTGGTTCCGGC 58.519 52.381 0.00 0.00 0.00 6.13
516 518 2.224209 GGGAGTATATGTGTGGTTCCGG 60.224 54.545 0.00 0.00 0.00 5.14
532 534 3.442076 AGTAATTCCGAACAGAGGGAGT 58.558 45.455 0.00 0.00 33.01 3.85
533 535 4.184629 CAAGTAATTCCGAACAGAGGGAG 58.815 47.826 0.00 0.00 33.01 4.30
534 536 3.581332 ACAAGTAATTCCGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
535 537 3.933332 GACAAGTAATTCCGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
536 538 3.612860 CGACAAGTAATTCCGAACAGAGG 59.387 47.826 0.00 0.00 0.00 3.69
537 539 3.060895 GCGACAAGTAATTCCGAACAGAG 59.939 47.826 0.00 0.00 0.00 3.35
538 540 2.991190 GCGACAAGTAATTCCGAACAGA 59.009 45.455 0.00 0.00 0.00 3.41
539 541 2.734606 TGCGACAAGTAATTCCGAACAG 59.265 45.455 0.00 0.00 0.00 3.16
540 542 2.756829 TGCGACAAGTAATTCCGAACA 58.243 42.857 0.00 0.00 0.00 3.18
541 543 3.799137 TTGCGACAAGTAATTCCGAAC 57.201 42.857 0.00 0.00 0.00 3.95
542 544 4.815040 TTTTGCGACAAGTAATTCCGAA 57.185 36.364 0.00 0.00 0.00 4.30
543 545 4.815040 TTTTTGCGACAAGTAATTCCGA 57.185 36.364 0.00 0.00 0.00 4.55
544 546 5.150683 TCATTTTTGCGACAAGTAATTCCG 58.849 37.500 0.00 0.00 0.00 4.30
545 547 7.116233 ACATTCATTTTTGCGACAAGTAATTCC 59.884 33.333 0.00 0.00 0.00 3.01
546 548 8.006741 ACATTCATTTTTGCGACAAGTAATTC 57.993 30.769 0.00 0.00 0.00 2.17
547 549 7.945033 ACATTCATTTTTGCGACAAGTAATT 57.055 28.000 0.00 0.00 0.00 1.40
548 550 9.289303 GATACATTCATTTTTGCGACAAGTAAT 57.711 29.630 0.00 0.00 0.00 1.89
549 551 7.480229 CGATACATTCATTTTTGCGACAAGTAA 59.520 33.333 0.00 0.00 0.00 2.24
550 552 6.958752 CGATACATTCATTTTTGCGACAAGTA 59.041 34.615 0.00 0.00 0.00 2.24
551 553 5.794945 CGATACATTCATTTTTGCGACAAGT 59.205 36.000 0.00 0.00 0.00 3.16
552 554 5.794945 ACGATACATTCATTTTTGCGACAAG 59.205 36.000 0.00 0.00 0.00 3.16
553 555 5.694816 ACGATACATTCATTTTTGCGACAA 58.305 33.333 0.00 0.00 0.00 3.18
554 556 5.289917 ACGATACATTCATTTTTGCGACA 57.710 34.783 0.00 0.00 0.00 4.35
555 557 6.021596 AGAACGATACATTCATTTTTGCGAC 58.978 36.000 0.00 0.00 0.00 5.19
556 558 6.176975 AGAACGATACATTCATTTTTGCGA 57.823 33.333 0.00 0.00 0.00 5.10
557 559 7.398746 TCTAGAACGATACATTCATTTTTGCG 58.601 34.615 0.00 0.00 0.00 4.85
571 573 8.988934 GCAAAAATGGATGTATCTAGAACGATA 58.011 33.333 0.00 0.00 0.00 2.92
572 574 7.307396 CGCAAAAATGGATGTATCTAGAACGAT 60.307 37.037 0.00 0.00 0.00 3.73
573 575 6.019075 CGCAAAAATGGATGTATCTAGAACGA 60.019 38.462 0.00 0.00 0.00 3.85
574 576 6.019075 TCGCAAAAATGGATGTATCTAGAACG 60.019 38.462 0.00 0.00 0.00 3.95
575 577 7.126398 GTCGCAAAAATGGATGTATCTAGAAC 58.874 38.462 0.00 0.00 0.00 3.01
576 578 6.821160 TGTCGCAAAAATGGATGTATCTAGAA 59.179 34.615 0.00 0.00 0.00 2.10
577 579 6.345298 TGTCGCAAAAATGGATGTATCTAGA 58.655 36.000 0.00 0.00 0.00 2.43
578 580 6.603237 TGTCGCAAAAATGGATGTATCTAG 57.397 37.500 0.00 0.00 0.00 2.43
579 581 6.993786 TTGTCGCAAAAATGGATGTATCTA 57.006 33.333 0.00 0.00 0.00 1.98
580 582 5.895636 TTGTCGCAAAAATGGATGTATCT 57.104 34.783 0.00 0.00 0.00 1.98
581 583 8.627487 TTATTTGTCGCAAAAATGGATGTATC 57.373 30.769 8.65 0.00 0.00 2.24
582 584 9.598517 AATTATTTGTCGCAAAAATGGATGTAT 57.401 25.926 8.65 0.00 0.00 2.29
583 585 8.994429 AATTATTTGTCGCAAAAATGGATGTA 57.006 26.923 8.65 0.00 0.00 2.29
584 586 7.201427 CGAATTATTTGTCGCAAAAATGGATGT 60.201 33.333 8.65 0.00 0.00 3.06
585 587 7.112397 CGAATTATTTGTCGCAAAAATGGATG 58.888 34.615 8.65 0.00 0.00 3.51
586 588 6.255453 CCGAATTATTTGTCGCAAAAATGGAT 59.745 34.615 8.65 0.00 35.93 3.41
587 589 5.574830 CCGAATTATTTGTCGCAAAAATGGA 59.425 36.000 8.65 0.00 35.93 3.41
588 590 5.574830 TCCGAATTATTTGTCGCAAAAATGG 59.425 36.000 8.65 8.42 35.93 3.16
589 591 6.624710 TCCGAATTATTTGTCGCAAAAATG 57.375 33.333 8.65 0.00 35.93 2.32
590 592 6.183359 CGTTCCGAATTATTTGTCGCAAAAAT 60.183 34.615 8.65 7.53 35.93 1.82
591 593 5.115773 CGTTCCGAATTATTTGTCGCAAAAA 59.884 36.000 8.65 6.02 35.93 1.94
592 594 4.613448 CGTTCCGAATTATTTGTCGCAAAA 59.387 37.500 8.65 0.00 35.93 2.44
593 595 4.152526 CGTTCCGAATTATTTGTCGCAAA 58.847 39.130 7.32 7.32 35.93 3.68
594 596 3.425094 CCGTTCCGAATTATTTGTCGCAA 60.425 43.478 0.00 0.00 35.93 4.85
595 597 2.094575 CCGTTCCGAATTATTTGTCGCA 59.905 45.455 0.00 0.00 35.93 5.10
596 598 2.349275 TCCGTTCCGAATTATTTGTCGC 59.651 45.455 0.00 0.00 35.93 5.19
597 599 3.000925 CCTCCGTTCCGAATTATTTGTCG 59.999 47.826 0.00 0.00 37.01 4.35
598 600 3.311596 CCCTCCGTTCCGAATTATTTGTC 59.688 47.826 0.00 0.00 0.00 3.18
599 601 3.054948 TCCCTCCGTTCCGAATTATTTGT 60.055 43.478 0.00 0.00 0.00 2.83
600 602 3.537580 TCCCTCCGTTCCGAATTATTTG 58.462 45.455 0.00 0.00 0.00 2.32
601 603 3.199289 ACTCCCTCCGTTCCGAATTATTT 59.801 43.478 0.00 0.00 0.00 1.40
602 604 2.770232 ACTCCCTCCGTTCCGAATTATT 59.230 45.455 0.00 0.00 0.00 1.40
603 605 2.395619 ACTCCCTCCGTTCCGAATTAT 58.604 47.619 0.00 0.00 0.00 1.28
604 606 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
605 607 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
606 608 1.400737 CTACTCCCTCCGTTCCGAAT 58.599 55.000 0.00 0.00 0.00 3.34
607 609 0.682209 CCTACTCCCTCCGTTCCGAA 60.682 60.000 0.00 0.00 0.00 4.30
608 610 1.077212 CCTACTCCCTCCGTTCCGA 60.077 63.158 0.00 0.00 0.00 4.55
609 611 0.969409 AACCTACTCCCTCCGTTCCG 60.969 60.000 0.00 0.00 0.00 4.30
610 612 0.535797 CAACCTACTCCCTCCGTTCC 59.464 60.000 0.00 0.00 0.00 3.62
611 613 1.264295 ACAACCTACTCCCTCCGTTC 58.736 55.000 0.00 0.00 0.00 3.95
612 614 1.346722 CAACAACCTACTCCCTCCGTT 59.653 52.381 0.00 0.00 0.00 4.44
613 615 0.974383 CAACAACCTACTCCCTCCGT 59.026 55.000 0.00 0.00 0.00 4.69
614 616 0.974383 ACAACAACCTACTCCCTCCG 59.026 55.000 0.00 0.00 0.00 4.63
615 617 3.307269 GGTAACAACAACCTACTCCCTCC 60.307 52.174 0.00 0.00 33.97 4.30
616 618 3.615834 CGGTAACAACAACCTACTCCCTC 60.616 52.174 0.00 0.00 34.66 4.30
617 619 2.301009 CGGTAACAACAACCTACTCCCT 59.699 50.000 0.00 0.00 34.66 4.20
618 620 2.613725 CCGGTAACAACAACCTACTCCC 60.614 54.545 0.00 0.00 34.66 4.30
619 621 2.691927 CCGGTAACAACAACCTACTCC 58.308 52.381 0.00 0.00 34.66 3.85
620 622 2.071540 GCCGGTAACAACAACCTACTC 58.928 52.381 1.90 0.00 34.66 2.59
621 623 1.271001 GGCCGGTAACAACAACCTACT 60.271 52.381 1.90 0.00 34.66 2.57
622 624 1.159285 GGCCGGTAACAACAACCTAC 58.841 55.000 1.90 0.00 34.66 3.18
623 625 0.036590 GGGCCGGTAACAACAACCTA 59.963 55.000 1.90 0.00 34.66 3.08
624 626 1.228337 GGGCCGGTAACAACAACCT 60.228 57.895 1.90 0.00 34.66 3.50
625 627 2.270257 GGGGCCGGTAACAACAACC 61.270 63.158 1.90 0.00 0.00 3.77
647 649 2.180432 AAAGGTCGGCAAGTAGGTTC 57.820 50.000 0.00 0.00 0.00 3.62
674 676 2.094957 GCTAGATCGGGACTGCTGTATC 60.095 54.545 0.00 0.00 0.00 2.24
678 680 1.007964 CGCTAGATCGGGACTGCTG 60.008 63.158 0.00 0.00 0.00 4.41
694 696 0.807667 ATGCAGACTTGATCGACCGC 60.808 55.000 0.00 0.00 0.00 5.68
697 699 4.027295 CGTAGAAATGCAGACTTGATCGAC 60.027 45.833 0.00 0.00 0.00 4.20
726 728 0.798776 GACACGGACATTTGCAGAGG 59.201 55.000 0.00 0.00 0.00 3.69
821 831 5.931146 GTGCCATCTAGGAGTATCAATCTTG 59.069 44.000 0.00 0.00 41.22 3.02
832 842 0.176680 AAGCACGTGCCATCTAGGAG 59.823 55.000 35.51 0.00 43.38 3.69
833 843 1.480789 TAAGCACGTGCCATCTAGGA 58.519 50.000 35.51 10.24 43.38 2.94
834 844 1.933853 GTTAAGCACGTGCCATCTAGG 59.066 52.381 35.51 0.00 43.38 3.02
835 845 1.933853 GGTTAAGCACGTGCCATCTAG 59.066 52.381 35.51 0.00 43.38 2.43
852 862 3.678056 TGCGTCTAGAATCAAGTGGTT 57.322 42.857 0.00 0.00 0.00 3.67
857 867 3.728221 CGTGAGATGCGTCTAGAATCAAG 59.272 47.826 8.83 1.14 37.36 3.02
864 874 0.655915 CGCTCGTGAGATGCGTCTAG 60.656 60.000 8.83 3.65 45.69 2.43
865 875 1.352056 CGCTCGTGAGATGCGTCTA 59.648 57.895 8.83 0.00 45.69 2.59
866 876 2.101185 CGCTCGTGAGATGCGTCT 59.899 61.111 8.55 8.55 45.69 4.18
927 947 3.300667 CTGCGCGCTTGACTTCACC 62.301 63.158 33.29 0.00 0.00 4.02
929 949 0.950555 ATTCTGCGCGCTTGACTTCA 60.951 50.000 33.29 14.83 0.00 3.02
970 990 2.972625 GCCGTATATGATTGGCAGCTA 58.027 47.619 0.00 0.00 46.76 3.32
977 997 2.029244 GCCGAATCGCCGTATATGATTG 59.971 50.000 0.00 0.00 32.74 2.67
1020 1040 3.558411 GTGGCGCGCTCAGCTTAG 61.558 66.667 32.29 0.00 45.59 2.18
1038 1058 1.813192 CCAGCGAAGAGAGAGGACC 59.187 63.158 0.00 0.00 0.00 4.46
1039 1059 1.140804 GCCAGCGAAGAGAGAGGAC 59.859 63.158 0.00 0.00 0.00 3.85
1133 1164 4.241555 ATCGCCATCGCCCAGGAC 62.242 66.667 0.00 0.00 35.26 3.85
1144 1175 4.393155 AACTGCTCGCCATCGCCA 62.393 61.111 0.00 0.00 35.26 5.69
1492 1539 0.029567 CGAGCTCTACGCCGAAGATT 59.970 55.000 12.85 0.00 40.39 2.40
1504 1551 0.323816 TCTGGATGGTGTCGAGCTCT 60.324 55.000 12.85 0.00 33.14 4.09
1600 1647 3.204827 TCGTCGTAGTAGCCGGCC 61.205 66.667 26.15 9.10 0.00 6.13
1777 5039 1.444553 CTCCACGAGCACCTTCGAC 60.445 63.158 2.12 0.00 43.03 4.20
1850 5121 1.518133 CGAAGCTCCAGCCGAGAAG 60.518 63.158 2.62 0.00 41.63 2.85
1984 5258 3.379445 ACCACGCCGAGGACGAAT 61.379 61.111 7.79 0.00 42.66 3.34
3126 6441 4.703897 ACTCACGAGTCCTTGAAATTGAA 58.296 39.130 0.00 0.00 36.92 2.69
3127 6442 4.336889 ACTCACGAGTCCTTGAAATTGA 57.663 40.909 0.00 0.00 36.92 2.57
3128 6443 4.273480 ACAACTCACGAGTCCTTGAAATTG 59.727 41.667 0.00 9.48 41.58 2.32
3129 6444 4.273480 CACAACTCACGAGTCCTTGAAATT 59.727 41.667 0.00 0.00 41.58 1.82
3130 6445 3.809832 CACAACTCACGAGTCCTTGAAAT 59.190 43.478 0.00 0.00 41.58 2.17
3155 6569 2.417933 GACACCTGATCAACATCTGCAC 59.582 50.000 0.00 0.00 0.00 4.57
3170 6584 3.428532 ACCAATACTAGTCGTGACACCT 58.571 45.455 0.00 0.00 0.00 4.00
3195 6609 6.113411 ACACACAGAACAGGGTTATTATAGC 58.887 40.000 0.00 0.00 0.00 2.97
3197 6611 8.370266 ACTACACACAGAACAGGGTTATTATA 57.630 34.615 0.00 0.00 0.00 0.98
3198 6612 7.253905 ACTACACACAGAACAGGGTTATTAT 57.746 36.000 0.00 0.00 0.00 1.28
3226 6640 6.958192 TCTCAGGGAAACTATACCAAAGTAGT 59.042 38.462 0.00 0.00 32.75 2.73
3233 6647 5.148502 GAGGATCTCAGGGAAACTATACCA 58.851 45.833 0.00 0.00 0.00 3.25
3276 6690 9.693739 TGAATATCAACTTATTTTCTGGGCTTA 57.306 29.630 0.00 0.00 0.00 3.09
3277 6691 8.593945 TGAATATCAACTTATTTTCTGGGCTT 57.406 30.769 0.00 0.00 0.00 4.35
3279 6693 9.468532 GAATGAATATCAACTTATTTTCTGGGC 57.531 33.333 0.00 0.00 0.00 5.36
3293 6707 9.970395 GCCATGAAACAATAGAATGAATATCAA 57.030 29.630 0.00 0.00 0.00 2.57
3298 6712 8.302515 AGAAGCCATGAAACAATAGAATGAAT 57.697 30.769 0.00 0.00 0.00 2.57
3299 6713 7.707624 AGAAGCCATGAAACAATAGAATGAA 57.292 32.000 0.00 0.00 0.00 2.57
3301 6715 8.133627 CCTAAGAAGCCATGAAACAATAGAATG 58.866 37.037 0.00 0.00 0.00 2.67
3303 6717 6.095440 GCCTAAGAAGCCATGAAACAATAGAA 59.905 38.462 0.00 0.00 0.00 2.10
3304 6718 5.590259 GCCTAAGAAGCCATGAAACAATAGA 59.410 40.000 0.00 0.00 0.00 1.98
3305 6719 5.357878 TGCCTAAGAAGCCATGAAACAATAG 59.642 40.000 0.00 0.00 0.00 1.73
3306 6720 5.260424 TGCCTAAGAAGCCATGAAACAATA 58.740 37.500 0.00 0.00 0.00 1.90
3307 6721 4.088634 TGCCTAAGAAGCCATGAAACAAT 58.911 39.130 0.00 0.00 0.00 2.71
3309 6723 3.084039 CTGCCTAAGAAGCCATGAAACA 58.916 45.455 0.00 0.00 0.00 2.83
3310 6724 3.347216 TCTGCCTAAGAAGCCATGAAAC 58.653 45.455 0.00 0.00 29.54 2.78
3312 6726 3.939740 ATCTGCCTAAGAAGCCATGAA 57.060 42.857 0.00 0.00 38.79 2.57
3314 6728 4.996788 AAAATCTGCCTAAGAAGCCATG 57.003 40.909 0.00 0.00 38.79 3.66
3333 6747 4.542697 AGAGAAACAGGGGCAAGTAAAAA 58.457 39.130 0.00 0.00 0.00 1.94
3335 6749 3.876309 AGAGAAACAGGGGCAAGTAAA 57.124 42.857 0.00 0.00 0.00 2.01
3337 6751 4.362677 AGATAGAGAAACAGGGGCAAGTA 58.637 43.478 0.00 0.00 0.00 2.24
3338 6752 3.185455 AGATAGAGAAACAGGGGCAAGT 58.815 45.455 0.00 0.00 0.00 3.16
3339 6753 3.454082 AGAGATAGAGAAACAGGGGCAAG 59.546 47.826 0.00 0.00 0.00 4.01
3340 6754 3.454858 AGAGATAGAGAAACAGGGGCAA 58.545 45.455 0.00 0.00 0.00 4.52
3341 6755 3.121929 AGAGATAGAGAAACAGGGGCA 57.878 47.619 0.00 0.00 0.00 5.36
3342 6756 3.709141 AGAAGAGATAGAGAAACAGGGGC 59.291 47.826 0.00 0.00 0.00 5.80
3343 6757 5.068987 CAGAGAAGAGATAGAGAAACAGGGG 59.931 48.000 0.00 0.00 0.00 4.79
3344 6758 5.451798 GCAGAGAAGAGATAGAGAAACAGGG 60.452 48.000 0.00 0.00 0.00 4.45
3345 6759 5.360714 AGCAGAGAAGAGATAGAGAAACAGG 59.639 44.000 0.00 0.00 0.00 4.00
3346 6760 6.455360 AGCAGAGAAGAGATAGAGAAACAG 57.545 41.667 0.00 0.00 0.00 3.16
3347 6761 6.663093 AGAAGCAGAGAAGAGATAGAGAAACA 59.337 38.462 0.00 0.00 0.00 2.83
3348 6762 7.067494 AGAGAAGCAGAGAAGAGATAGAGAAAC 59.933 40.741 0.00 0.00 0.00 2.78
3349 6763 7.067372 CAGAGAAGCAGAGAAGAGATAGAGAAA 59.933 40.741 0.00 0.00 0.00 2.52
3350 6764 6.543465 CAGAGAAGCAGAGAAGAGATAGAGAA 59.457 42.308 0.00 0.00 0.00 2.87
3351 6765 6.057533 CAGAGAAGCAGAGAAGAGATAGAGA 58.942 44.000 0.00 0.00 0.00 3.10
3352 6766 5.278169 GCAGAGAAGCAGAGAAGAGATAGAG 60.278 48.000 0.00 0.00 0.00 2.43
3353 6767 4.580167 GCAGAGAAGCAGAGAAGAGATAGA 59.420 45.833 0.00 0.00 0.00 1.98
3354 6768 4.581824 AGCAGAGAAGCAGAGAAGAGATAG 59.418 45.833 0.00 0.00 36.85 2.08
3355 6769 4.535781 AGCAGAGAAGCAGAGAAGAGATA 58.464 43.478 0.00 0.00 36.85 1.98
3356 6770 3.368248 AGCAGAGAAGCAGAGAAGAGAT 58.632 45.455 0.00 0.00 36.85 2.75
3357 6771 2.806434 AGCAGAGAAGCAGAGAAGAGA 58.194 47.619 0.00 0.00 36.85 3.10
3358 6772 3.696051 AGTAGCAGAGAAGCAGAGAAGAG 59.304 47.826 0.00 0.00 36.85 2.85
3359 6773 3.696045 AGTAGCAGAGAAGCAGAGAAGA 58.304 45.455 0.00 0.00 36.85 2.87
3360 6774 5.574891 TTAGTAGCAGAGAAGCAGAGAAG 57.425 43.478 0.00 0.00 36.85 2.85
3361 6775 7.646548 TTATTAGTAGCAGAGAAGCAGAGAA 57.353 36.000 0.00 0.00 36.85 2.87
3362 6776 7.122799 TGTTTATTAGTAGCAGAGAAGCAGAGA 59.877 37.037 0.00 0.00 36.85 3.10
3363 6777 7.261325 TGTTTATTAGTAGCAGAGAAGCAGAG 58.739 38.462 0.00 0.00 36.85 3.35
3364 6778 7.170393 TGTTTATTAGTAGCAGAGAAGCAGA 57.830 36.000 0.00 0.00 36.85 4.26
3365 6779 7.834068 TTGTTTATTAGTAGCAGAGAAGCAG 57.166 36.000 0.00 0.00 36.85 4.24
3366 6780 7.495934 GGATTGTTTATTAGTAGCAGAGAAGCA 59.504 37.037 0.00 0.00 36.85 3.91
3367 6781 7.495934 TGGATTGTTTATTAGTAGCAGAGAAGC 59.504 37.037 0.00 0.00 0.00 3.86
3368 6782 8.948631 TGGATTGTTTATTAGTAGCAGAGAAG 57.051 34.615 0.00 0.00 0.00 2.85
3405 6820 1.169661 TTTGCTTGGGTGCACGTAGG 61.170 55.000 11.45 3.73 43.20 3.18
3411 6826 1.723608 CTCACGTTTGCTTGGGTGCA 61.724 55.000 0.00 0.00 41.65 4.57
3432 6847 1.349688 TCCTGTGGTGGTAATGTGTCC 59.650 52.381 0.00 0.00 0.00 4.02
3502 6918 9.440773 CCTAGATAATTGCTAAGCATACATCAA 57.559 33.333 0.00 0.00 38.76 2.57
3510 6926 5.300752 GTCAGCCTAGATAATTGCTAAGCA 58.699 41.667 11.16 0.00 36.47 3.91
3522 6938 3.235200 GTGGAGTATGGTCAGCCTAGAT 58.765 50.000 0.00 0.00 35.27 1.98
3579 7855 3.543494 CCACAAATCACGCGAATCAATTC 59.457 43.478 15.93 0.00 0.00 2.17
3623 7899 5.949354 AGACCGAACCAATCCATGATAAAAA 59.051 36.000 0.00 0.00 0.00 1.94
3624 7900 5.356751 CAGACCGAACCAATCCATGATAAAA 59.643 40.000 0.00 0.00 0.00 1.52
3625 7901 4.881273 CAGACCGAACCAATCCATGATAAA 59.119 41.667 0.00 0.00 0.00 1.40
3626 7902 4.450976 CAGACCGAACCAATCCATGATAA 58.549 43.478 0.00 0.00 0.00 1.75
3627 7903 3.744214 GCAGACCGAACCAATCCATGATA 60.744 47.826 0.00 0.00 0.00 2.15
3628 7904 2.923121 CAGACCGAACCAATCCATGAT 58.077 47.619 0.00 0.00 0.00 2.45
3629 7905 1.678728 GCAGACCGAACCAATCCATGA 60.679 52.381 0.00 0.00 0.00 3.07
3630 7906 0.734889 GCAGACCGAACCAATCCATG 59.265 55.000 0.00 0.00 0.00 3.66
3719 7999 5.757320 CCATGCGTTCATTATCTCTTCTCTT 59.243 40.000 0.00 0.00 0.00 2.85
3790 8073 0.968901 TCCGCCTCGCTCTTTCCTAA 60.969 55.000 0.00 0.00 0.00 2.69
3822 8131 2.540265 ATCAGCCCTTAATCAGCTCG 57.460 50.000 0.00 0.00 33.70 5.03
3823 8132 6.890979 AATTAATCAGCCCTTAATCAGCTC 57.109 37.500 0.00 0.00 33.70 4.09
3824 8133 6.428159 CGTAATTAATCAGCCCTTAATCAGCT 59.572 38.462 0.00 0.00 37.32 4.24
3825 8134 6.603095 CGTAATTAATCAGCCCTTAATCAGC 58.397 40.000 0.00 0.00 30.43 4.26
3826 8135 6.428159 AGCGTAATTAATCAGCCCTTAATCAG 59.572 38.462 6.25 0.00 30.43 2.90
3827 8136 6.204688 CAGCGTAATTAATCAGCCCTTAATCA 59.795 38.462 6.25 0.00 30.43 2.57
3828 8137 6.426937 TCAGCGTAATTAATCAGCCCTTAATC 59.573 38.462 6.25 0.00 30.43 1.75
3829 8138 6.204882 GTCAGCGTAATTAATCAGCCCTTAAT 59.795 38.462 6.25 0.00 31.70 1.40
3830 8139 5.526111 GTCAGCGTAATTAATCAGCCCTTAA 59.474 40.000 6.25 0.00 0.00 1.85
3831 8140 5.054477 GTCAGCGTAATTAATCAGCCCTTA 58.946 41.667 6.25 0.00 0.00 2.69
3832 8141 3.877508 GTCAGCGTAATTAATCAGCCCTT 59.122 43.478 6.25 0.00 0.00 3.95
3851 8160 7.279981 CAGATAATTCAGGAATACAAACCGTCA 59.720 37.037 0.00 0.00 0.00 4.35
3869 8179 8.415950 AGTCTATTCGTGATCCTCAGATAATT 57.584 34.615 0.00 0.00 30.90 1.40
3930 8240 4.092821 GCACAACGTAACATGAATAGCAGA 59.907 41.667 0.00 0.00 0.00 4.26
4033 9282 4.619227 CACAAGGGACGGCGGTGT 62.619 66.667 13.24 4.19 0.00 4.16
4060 9310 4.925861 GGGGAGGAGATGCAGCGC 62.926 72.222 0.00 0.00 0.00 5.92
4119 9966 4.845580 CGGCGAGCAAGGGCAGAT 62.846 66.667 0.00 0.00 44.61 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.