Multiple sequence alignment - TraesCS5A01G405700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G405700 chr5A 100.000 4942 0 0 1 4942 597293418 597288477 0.000000e+00 9127.0
1 TraesCS5A01G405700 chr5A 99.248 532 2 2 3968 4498 29508294 29508824 0.000000e+00 959.0
2 TraesCS5A01G405700 chr5A 99.551 445 1 1 4498 4942 29510113 29510556 0.000000e+00 809.0
3 TraesCS5A01G405700 chr5A 91.304 69 6 0 3000 3068 109290473 109290405 1.460000e-15 95.3
4 TraesCS5A01G405700 chr5B 92.814 3618 153 38 409 3966 585755483 585751913 0.000000e+00 5142.0
5 TraesCS5A01G405700 chr5B 87.568 185 21 2 196 379 68377340 68377157 3.880000e-51 213.0
6 TraesCS5A01G405700 chr5B 87.097 186 18 4 196 380 350408197 350408377 6.480000e-49 206.0
7 TraesCS5A01G405700 chr5B 88.372 86 10 0 3000 3085 115090690 115090605 2.430000e-18 104.0
8 TraesCS5A01G405700 chr5B 85.227 88 12 1 3970 4056 595056787 595056700 6.810000e-14 89.8
9 TraesCS5A01G405700 chr5B 83.871 93 10 5 3970 4060 551667254 551667165 3.170000e-12 84.2
10 TraesCS5A01G405700 chr5D 93.430 2618 87 27 409 2974 478166939 478164355 0.000000e+00 3803.0
11 TraesCS5A01G405700 chr5D 91.945 1018 47 11 2977 3966 478164285 478163275 0.000000e+00 1393.0
12 TraesCS5A01G405700 chr5D 88.372 86 10 0 3000 3085 105114204 105114119 2.430000e-18 104.0
13 TraesCS5A01G405700 chr6A 88.143 447 49 3 4499 4942 364669387 364668942 3.390000e-146 529.0
14 TraesCS5A01G405700 chr6D 87.892 446 39 10 4498 4939 254168248 254168682 1.230000e-140 510.0
15 TraesCS5A01G405700 chr6D 88.235 187 17 4 196 379 377820330 377820514 8.330000e-53 219.0
16 TraesCS5A01G405700 chr6D 86.702 188 23 2 195 381 167226307 167226493 1.800000e-49 207.0
17 TraesCS5A01G405700 chr6D 88.158 152 17 1 4348 4498 254166307 254166458 3.930000e-41 180.0
18 TraesCS5A01G405700 chr1A 80.241 663 107 18 3286 3942 520573064 520573708 1.240000e-130 477.0
19 TraesCS5A01G405700 chr1A 90.385 208 17 3 189 393 557897505 557897712 2.270000e-68 270.0
20 TraesCS5A01G405700 chr1A 75.802 405 72 16 1052 1453 520570323 520570704 1.090000e-41 182.0
21 TraesCS5A01G405700 chr1D 79.762 672 113 13 3277 3942 424730658 424731312 2.690000e-127 466.0
22 TraesCS5A01G405700 chr1D 74.568 405 77 16 1052 1453 424728047 424728428 2.380000e-33 154.0
23 TraesCS5A01G405700 chr1D 91.892 74 6 0 3009 3082 17195731 17195804 2.430000e-18 104.0
24 TraesCS5A01G405700 chr1D 91.667 72 6 0 3000 3071 17195802 17195731 3.150000e-17 100.0
25 TraesCS5A01G405700 chr1B 79.789 663 110 16 3286 3942 573861274 573861918 1.250000e-125 460.0
26 TraesCS5A01G405700 chr1B 75.062 405 75 16 1052 1453 573858704 573859085 1.100000e-36 165.0
27 TraesCS5A01G405700 chr1B 87.500 88 10 1 3970 4056 390441940 390441853 3.150000e-17 100.0
28 TraesCS5A01G405700 chr1B 79.167 96 19 1 4350 4444 241944303 241944398 1.150000e-06 65.8
29 TraesCS5A01G405700 chr3B 77.946 662 122 17 3287 3942 543467857 543467214 4.640000e-105 392.0
30 TraesCS5A01G405700 chr3B 75.000 620 120 26 1161 1752 543470699 543470087 2.280000e-63 254.0
31 TraesCS5A01G405700 chr3B 90.476 84 8 0 3003 3086 405231360 405231277 1.450000e-20 111.0
32 TraesCS5A01G405700 chr3B 83.871 93 10 5 3970 4060 783155995 783155906 3.170000e-12 84.2
33 TraesCS5A01G405700 chr3B 83.871 93 10 5 3970 4060 783160834 783160745 3.170000e-12 84.2
34 TraesCS5A01G405700 chr3A 77.591 656 129 13 3287 3942 533661712 533662349 1.000000e-101 381.0
35 TraesCS5A01G405700 chr3A 77.282 493 71 31 1161 1625 533658692 533659171 8.210000e-63 252.0
36 TraesCS5A01G405700 chr3D 84.726 347 53 0 3301 3647 417160796 417160450 1.020000e-91 348.0
37 TraesCS5A01G405700 chr3D 76.543 486 90 18 1161 1631 417163788 417163312 1.370000e-60 244.0
38 TraesCS5A01G405700 chr3D 87.701 187 17 3 196 379 7970655 7970472 3.880000e-51 213.0
39 TraesCS5A01G405700 chr4A 76.821 453 68 25 2515 2944 532222343 532221905 2.320000e-53 220.0
40 TraesCS5A01G405700 chr2D 87.912 182 19 2 198 378 481596776 481596955 1.390000e-50 211.0
41 TraesCS5A01G405700 chrUn 87.568 185 16 3 196 379 108763082 108762904 1.800000e-49 207.0
42 TraesCS5A01G405700 chrUn 83.871 93 10 5 3970 4060 420018772 420018861 3.170000e-12 84.2
43 TraesCS5A01G405700 chrUn 83.871 93 10 5 3970 4060 420033106 420033017 3.170000e-12 84.2
44 TraesCS5A01G405700 chr4D 85.567 194 24 4 189 381 305471929 305471739 3.020000e-47 200.0
45 TraesCS5A01G405700 chr7A 76.103 272 51 9 4498 4764 666675342 666675604 4.010000e-26 130.0
46 TraesCS5A01G405700 chr7A 86.957 92 10 2 3970 4060 198659384 198659474 8.750000e-18 102.0
47 TraesCS5A01G405700 chr7D 91.304 92 6 1 3000 3089 237415164 237415073 1.870000e-24 124.0
48 TraesCS5A01G405700 chr7B 89.247 93 7 2 3000 3089 214074954 214074862 4.040000e-21 113.0
49 TraesCS5A01G405700 chr4B 89.552 67 6 1 1158 1223 628227460 628227526 3.170000e-12 84.2
50 TraesCS5A01G405700 chr4B 91.228 57 4 1 1052 1107 628227381 628227437 5.300000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G405700 chr5A 597288477 597293418 4941 True 9127.0 9127 100.0000 1 4942 1 chr5A.!!$R2 4941
1 TraesCS5A01G405700 chr5A 29508294 29510556 2262 False 884.0 959 99.3995 3968 4942 2 chr5A.!!$F1 974
2 TraesCS5A01G405700 chr5B 585751913 585755483 3570 True 5142.0 5142 92.8140 409 3966 1 chr5B.!!$R4 3557
3 TraesCS5A01G405700 chr5D 478163275 478166939 3664 True 2598.0 3803 92.6875 409 3966 2 chr5D.!!$R2 3557
4 TraesCS5A01G405700 chr6D 254166307 254168682 2375 False 345.0 510 88.0250 4348 4939 2 chr6D.!!$F3 591
5 TraesCS5A01G405700 chr1A 520570323 520573708 3385 False 329.5 477 78.0215 1052 3942 2 chr1A.!!$F2 2890
6 TraesCS5A01G405700 chr1D 424728047 424731312 3265 False 310.0 466 77.1650 1052 3942 2 chr1D.!!$F2 2890
7 TraesCS5A01G405700 chr1B 573858704 573861918 3214 False 312.5 460 77.4255 1052 3942 2 chr1B.!!$F2 2890
8 TraesCS5A01G405700 chr3B 543467214 543470699 3485 True 323.0 392 76.4730 1161 3942 2 chr3B.!!$R4 2781
9 TraesCS5A01G405700 chr3A 533658692 533662349 3657 False 316.5 381 77.4365 1161 3942 2 chr3A.!!$F1 2781
10 TraesCS5A01G405700 chr3D 417160450 417163788 3338 True 296.0 348 80.6345 1161 3647 2 chr3D.!!$R2 2486

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 166 0.031994 GTGAAACATGCACGGGCTTT 59.968 50.0 12.74 2.35 37.67 3.51 F
654 655 0.251165 CCGATCTCTCTCCCTCTCCC 60.251 65.0 0.00 0.00 0.00 4.30 F
659 660 0.478507 CTCTCTCCCTCTCCCTCTCC 59.521 65.0 0.00 0.00 0.00 3.71 F
1811 2744 0.739813 ATTCGCAGCCTCGTAACCAC 60.740 55.0 0.00 0.00 0.00 4.16 F
3735 6011 0.747283 GCTGATGGTGCTGAAGGAGG 60.747 60.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1539 1637 1.298014 GGTGAGGAACTGGAGCAGG 59.702 63.158 0.00 0.00 41.55 4.85 R
2564 3967 1.135915 TGGTGCGCACAACTTTCAAAT 59.864 42.857 38.60 0.00 33.30 2.32 R
2617 4031 1.154413 GTTCGCATTGGCACTGTCG 60.154 57.895 6.71 10.26 41.24 4.35 R
3751 6027 1.630878 TCTGCTTCTTCCCTTCCTTCC 59.369 52.381 0.00 0.00 0.00 3.46 R
4864 8986 5.400066 TGACGAACACTCCATCTATCAAA 57.600 39.130 0.00 0.00 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.729124 TTTAGTATAGCTTACCCACAGAAGT 57.271 36.000 0.00 0.00 0.00 3.01
25 26 7.729124 TTAGTATAGCTTACCCACAGAAGTT 57.271 36.000 0.00 0.00 0.00 2.66
26 27 8.827832 TTAGTATAGCTTACCCACAGAAGTTA 57.172 34.615 0.00 0.00 0.00 2.24
27 28 7.110043 AGTATAGCTTACCCACAGAAGTTAC 57.890 40.000 0.00 0.00 0.00 2.50
28 29 6.896307 AGTATAGCTTACCCACAGAAGTTACT 59.104 38.462 0.00 0.00 0.00 2.24
29 30 8.057623 AGTATAGCTTACCCACAGAAGTTACTA 58.942 37.037 0.00 0.00 0.00 1.82
30 31 5.402997 AGCTTACCCACAGAAGTTACTAC 57.597 43.478 0.00 0.00 0.00 2.73
31 32 5.085219 AGCTTACCCACAGAAGTTACTACT 58.915 41.667 0.00 0.00 35.68 2.57
33 34 5.638234 GCTTACCCACAGAAGTTACTACTTG 59.362 44.000 0.00 0.00 44.51 3.16
34 35 6.517864 GCTTACCCACAGAAGTTACTACTTGA 60.518 42.308 0.00 0.00 44.51 3.02
35 36 5.881923 ACCCACAGAAGTTACTACTTGAA 57.118 39.130 0.00 0.00 44.51 2.69
36 37 6.243216 ACCCACAGAAGTTACTACTTGAAA 57.757 37.500 0.00 0.00 44.51 2.69
37 38 6.655930 ACCCACAGAAGTTACTACTTGAAAA 58.344 36.000 0.00 0.00 44.51 2.29
38 39 6.541278 ACCCACAGAAGTTACTACTTGAAAAC 59.459 38.462 0.00 0.00 44.51 2.43
39 40 6.292703 CCCACAGAAGTTACTACTTGAAAACG 60.293 42.308 0.00 0.00 44.51 3.60
40 41 6.257193 CCACAGAAGTTACTACTTGAAAACGT 59.743 38.462 0.00 0.00 44.51 3.99
41 42 7.436080 CCACAGAAGTTACTACTTGAAAACGTA 59.564 37.037 0.00 0.00 44.51 3.57
42 43 8.810427 CACAGAAGTTACTACTTGAAAACGTAA 58.190 33.333 0.00 0.00 44.51 3.18
43 44 9.369904 ACAGAAGTTACTACTTGAAAACGTAAA 57.630 29.630 0.00 0.00 44.51 2.01
66 67 7.857734 AAAAAGTCAAAATAAAACCTGTGGG 57.142 32.000 0.00 0.00 38.88 4.61
68 69 7.663043 AAAGTCAAAATAAAACCTGTGGGTA 57.337 32.000 0.00 0.00 46.67 3.69
69 70 6.644248 AGTCAAAATAAAACCTGTGGGTAC 57.356 37.500 0.00 0.00 46.67 3.34
70 71 6.370453 AGTCAAAATAAAACCTGTGGGTACT 58.630 36.000 0.00 0.00 46.67 2.73
71 72 6.489022 AGTCAAAATAAAACCTGTGGGTACTC 59.511 38.462 0.00 0.00 46.67 2.59
72 73 5.771165 TCAAAATAAAACCTGTGGGTACTCC 59.229 40.000 0.00 0.00 46.67 3.85
73 74 3.622166 ATAAAACCTGTGGGTACTCCG 57.378 47.619 0.00 0.00 46.67 4.63
74 75 0.399075 AAAACCTGTGGGTACTCCGG 59.601 55.000 0.00 0.00 46.67 5.14
75 76 0.472352 AAACCTGTGGGTACTCCGGA 60.472 55.000 2.93 2.93 46.67 5.14
76 77 0.472352 AACCTGTGGGTACTCCGGAA 60.472 55.000 5.23 0.00 46.67 4.30
77 78 0.472352 ACCTGTGGGTACTCCGGAAA 60.472 55.000 5.23 0.00 45.32 3.13
78 79 0.036671 CCTGTGGGTACTCCGGAAAC 60.037 60.000 5.23 6.85 38.76 2.78
79 80 0.974383 CTGTGGGTACTCCGGAAACT 59.026 55.000 5.23 0.00 38.76 2.66
80 81 1.346722 CTGTGGGTACTCCGGAAACTT 59.653 52.381 5.23 0.00 38.76 2.66
81 82 1.071071 TGTGGGTACTCCGGAAACTTG 59.929 52.381 5.23 0.00 38.76 3.16
82 83 1.345415 GTGGGTACTCCGGAAACTTGA 59.655 52.381 5.23 0.00 38.76 3.02
83 84 2.048601 TGGGTACTCCGGAAACTTGAA 58.951 47.619 5.23 0.00 38.76 2.69
84 85 2.224354 TGGGTACTCCGGAAACTTGAAC 60.224 50.000 5.23 0.00 38.76 3.18
85 86 2.224354 GGGTACTCCGGAAACTTGAACA 60.224 50.000 5.23 0.00 33.83 3.18
86 87 3.469739 GGTACTCCGGAAACTTGAACAA 58.530 45.455 5.23 0.00 0.00 2.83
87 88 3.497262 GGTACTCCGGAAACTTGAACAAG 59.503 47.826 5.23 12.22 43.79 3.16
88 89 2.572290 ACTCCGGAAACTTGAACAAGG 58.428 47.619 17.05 0.00 42.53 3.61
89 90 2.171870 ACTCCGGAAACTTGAACAAGGA 59.828 45.455 17.05 5.44 42.53 3.36
90 91 3.211045 CTCCGGAAACTTGAACAAGGAA 58.789 45.455 17.05 0.00 42.53 3.36
91 92 3.211045 TCCGGAAACTTGAACAAGGAAG 58.789 45.455 17.05 5.54 42.53 3.46
92 93 2.287608 CCGGAAACTTGAACAAGGAAGC 60.288 50.000 17.05 5.37 42.53 3.86
93 94 2.602217 CGGAAACTTGAACAAGGAAGCG 60.602 50.000 17.05 0.00 42.53 4.68
94 95 2.616842 GGAAACTTGAACAAGGAAGCGA 59.383 45.455 17.05 0.00 42.53 4.93
95 96 3.304057 GGAAACTTGAACAAGGAAGCGAG 60.304 47.826 17.05 0.00 42.53 5.03
96 97 1.230324 ACTTGAACAAGGAAGCGAGC 58.770 50.000 17.05 0.00 42.53 5.03
97 98 1.229428 CTTGAACAAGGAAGCGAGCA 58.771 50.000 6.66 0.00 34.87 4.26
98 99 0.944386 TTGAACAAGGAAGCGAGCAC 59.056 50.000 0.00 0.00 0.00 4.40
99 100 0.179059 TGAACAAGGAAGCGAGCACA 60.179 50.000 0.00 0.00 0.00 4.57
100 101 0.944386 GAACAAGGAAGCGAGCACAA 59.056 50.000 0.00 0.00 0.00 3.33
101 102 1.537202 GAACAAGGAAGCGAGCACAAT 59.463 47.619 0.00 0.00 0.00 2.71
102 103 0.877071 ACAAGGAAGCGAGCACAATG 59.123 50.000 0.00 0.00 0.00 2.82
103 104 0.169672 CAAGGAAGCGAGCACAATGG 59.830 55.000 0.00 0.00 0.00 3.16
104 105 0.036732 AAGGAAGCGAGCACAATGGA 59.963 50.000 0.00 0.00 0.00 3.41
105 106 0.254178 AGGAAGCGAGCACAATGGAT 59.746 50.000 0.00 0.00 0.00 3.41
106 107 0.379669 GGAAGCGAGCACAATGGATG 59.620 55.000 0.00 0.00 0.00 3.51
107 108 1.372582 GAAGCGAGCACAATGGATGA 58.627 50.000 0.00 0.00 0.00 2.92
108 109 1.945394 GAAGCGAGCACAATGGATGAT 59.055 47.619 0.00 0.00 0.00 2.45
109 110 2.916702 AGCGAGCACAATGGATGATA 57.083 45.000 0.00 0.00 0.00 2.15
110 111 3.198409 AGCGAGCACAATGGATGATAA 57.802 42.857 0.00 0.00 0.00 1.75
111 112 3.136763 AGCGAGCACAATGGATGATAAG 58.863 45.455 0.00 0.00 0.00 1.73
112 113 3.133691 GCGAGCACAATGGATGATAAGA 58.866 45.455 0.00 0.00 0.00 2.10
113 114 3.059325 GCGAGCACAATGGATGATAAGAC 60.059 47.826 0.00 0.00 0.00 3.01
114 115 4.375272 CGAGCACAATGGATGATAAGACT 58.625 43.478 0.00 0.00 0.00 3.24
115 116 4.813161 CGAGCACAATGGATGATAAGACTT 59.187 41.667 0.00 0.00 0.00 3.01
116 117 5.295292 CGAGCACAATGGATGATAAGACTTT 59.705 40.000 0.00 0.00 0.00 2.66
117 118 6.479990 CGAGCACAATGGATGATAAGACTTTA 59.520 38.462 0.00 0.00 0.00 1.85
118 119 7.517417 CGAGCACAATGGATGATAAGACTTTAC 60.517 40.741 0.00 0.00 0.00 2.01
119 120 6.258727 AGCACAATGGATGATAAGACTTTACG 59.741 38.462 0.00 0.00 0.00 3.18
120 121 6.511767 GCACAATGGATGATAAGACTTTACGG 60.512 42.308 0.00 0.00 0.00 4.02
121 122 6.761242 CACAATGGATGATAAGACTTTACGGA 59.239 38.462 0.00 0.00 0.00 4.69
122 123 6.761714 ACAATGGATGATAAGACTTTACGGAC 59.238 38.462 0.00 0.00 0.00 4.79
123 124 5.925506 TGGATGATAAGACTTTACGGACA 57.074 39.130 0.00 0.00 0.00 4.02
124 125 6.479972 TGGATGATAAGACTTTACGGACAT 57.520 37.500 0.00 0.00 0.00 3.06
125 126 6.280643 TGGATGATAAGACTTTACGGACATG 58.719 40.000 0.00 0.00 0.00 3.21
126 127 6.097696 TGGATGATAAGACTTTACGGACATGA 59.902 38.462 0.00 0.00 0.00 3.07
127 128 6.984474 GGATGATAAGACTTTACGGACATGAA 59.016 38.462 0.00 0.00 0.00 2.57
128 129 7.494625 GGATGATAAGACTTTACGGACATGAAA 59.505 37.037 0.00 0.00 0.00 2.69
129 130 8.786826 ATGATAAGACTTTACGGACATGAAAA 57.213 30.769 0.00 0.00 0.00 2.29
130 131 8.786826 TGATAAGACTTTACGGACATGAAAAT 57.213 30.769 0.00 0.00 0.00 1.82
131 132 9.878667 TGATAAGACTTTACGGACATGAAAATA 57.121 29.630 0.00 0.00 0.00 1.40
135 136 9.886132 AAGACTTTACGGACATGAAAATATAGT 57.114 29.630 0.00 0.00 0.00 2.12
156 157 5.356426 AGTAAACAAAAGGGTGAAACATGC 58.644 37.500 0.00 0.00 39.98 4.06
157 158 3.902881 AACAAAAGGGTGAAACATGCA 57.097 38.095 0.00 0.00 39.98 3.96
158 159 3.177997 ACAAAAGGGTGAAACATGCAC 57.822 42.857 0.00 0.00 39.98 4.57
159 160 2.126467 CAAAAGGGTGAAACATGCACG 58.874 47.619 0.00 0.00 39.98 5.34
160 161 0.673437 AAAGGGTGAAACATGCACGG 59.327 50.000 0.00 0.00 39.98 4.94
161 162 1.178534 AAGGGTGAAACATGCACGGG 61.179 55.000 0.00 0.00 39.98 5.28
162 163 2.258286 GGTGAAACATGCACGGGC 59.742 61.111 0.34 0.34 39.98 6.13
163 164 2.268076 GGTGAAACATGCACGGGCT 61.268 57.895 12.74 0.00 39.98 5.19
164 165 1.659794 GTGAAACATGCACGGGCTT 59.340 52.632 12.74 0.00 37.67 4.35
165 166 0.031994 GTGAAACATGCACGGGCTTT 59.968 50.000 12.74 2.35 37.67 3.51
166 167 1.268352 GTGAAACATGCACGGGCTTTA 59.732 47.619 12.74 0.00 37.67 1.85
167 168 2.094752 GTGAAACATGCACGGGCTTTAT 60.095 45.455 12.74 0.00 37.67 1.40
168 169 2.560542 TGAAACATGCACGGGCTTTATT 59.439 40.909 12.74 1.25 41.91 1.40
169 170 3.006323 TGAAACATGCACGGGCTTTATTT 59.994 39.130 12.74 7.74 41.91 1.40
170 171 3.676291 AACATGCACGGGCTTTATTTT 57.324 38.095 12.74 0.00 41.91 1.82
171 172 2.958213 ACATGCACGGGCTTTATTTTG 58.042 42.857 12.74 0.00 41.91 2.44
172 173 2.298729 ACATGCACGGGCTTTATTTTGT 59.701 40.909 12.74 0.17 41.91 2.83
173 174 3.244044 ACATGCACGGGCTTTATTTTGTT 60.244 39.130 12.74 0.00 41.91 2.83
174 175 2.748605 TGCACGGGCTTTATTTTGTTG 58.251 42.857 12.74 0.00 41.91 3.33
175 176 2.065512 GCACGGGCTTTATTTTGTTGG 58.934 47.619 0.00 0.00 36.96 3.77
176 177 2.288518 GCACGGGCTTTATTTTGTTGGA 60.289 45.455 0.00 0.00 36.96 3.53
177 178 3.800604 GCACGGGCTTTATTTTGTTGGAA 60.801 43.478 0.00 0.00 36.96 3.53
178 179 4.372656 CACGGGCTTTATTTTGTTGGAAA 58.627 39.130 0.00 0.00 0.00 3.13
179 180 4.447389 CACGGGCTTTATTTTGTTGGAAAG 59.553 41.667 0.00 0.00 33.05 2.62
186 187 7.120789 CTTTATTTTGTTGGAAAGCATGGAC 57.879 36.000 0.00 0.00 0.00 4.02
187 188 3.467374 TTTTGTTGGAAAGCATGGACC 57.533 42.857 0.00 0.00 0.00 4.46
188 189 2.079170 TTGTTGGAAAGCATGGACCA 57.921 45.000 0.00 0.00 0.00 4.02
189 190 2.079170 TGTTGGAAAGCATGGACCAA 57.921 45.000 0.00 0.00 39.60 3.67
190 191 2.392662 TGTTGGAAAGCATGGACCAAA 58.607 42.857 0.00 0.00 42.71 3.28
191 192 2.364970 TGTTGGAAAGCATGGACCAAAG 59.635 45.455 0.00 0.00 42.71 2.77
192 193 2.365293 GTTGGAAAGCATGGACCAAAGT 59.635 45.455 0.00 0.00 42.71 2.66
193 194 1.962807 TGGAAAGCATGGACCAAAGTG 59.037 47.619 0.00 0.00 0.00 3.16
194 195 1.963515 GGAAAGCATGGACCAAAGTGT 59.036 47.619 0.00 0.00 0.00 3.55
195 196 3.153919 GGAAAGCATGGACCAAAGTGTA 58.846 45.455 0.00 0.00 0.00 2.90
196 197 3.572255 GGAAAGCATGGACCAAAGTGTAA 59.428 43.478 0.00 0.00 0.00 2.41
197 198 4.546570 GAAAGCATGGACCAAAGTGTAAC 58.453 43.478 0.00 0.00 0.00 2.50
198 199 3.222173 AGCATGGACCAAAGTGTAACA 57.778 42.857 0.00 0.00 41.43 2.41
199 200 3.149196 AGCATGGACCAAAGTGTAACAG 58.851 45.455 0.00 0.00 41.43 3.16
200 201 2.884639 GCATGGACCAAAGTGTAACAGT 59.115 45.455 0.00 0.00 41.43 3.55
201 202 3.317993 GCATGGACCAAAGTGTAACAGTT 59.682 43.478 0.00 0.00 41.43 3.16
202 203 4.202111 GCATGGACCAAAGTGTAACAGTTT 60.202 41.667 0.00 0.00 41.43 2.66
214 215 8.500753 AAGTGTAACAGTTTGACTAATTCACA 57.499 30.769 0.00 0.00 41.43 3.58
215 216 8.677148 AGTGTAACAGTTTGACTAATTCACAT 57.323 30.769 0.00 0.00 41.43 3.21
216 217 8.774586 AGTGTAACAGTTTGACTAATTCACATC 58.225 33.333 0.00 0.00 41.43 3.06
217 218 8.774586 GTGTAACAGTTTGACTAATTCACATCT 58.225 33.333 0.00 0.00 36.32 2.90
218 219 9.990360 TGTAACAGTTTGACTAATTCACATCTA 57.010 29.630 0.00 0.00 32.26 1.98
221 222 9.950496 AACAGTTTGACTAATTCACATCTAGAT 57.050 29.630 0.00 0.00 32.26 1.98
222 223 9.376075 ACAGTTTGACTAATTCACATCTAGATG 57.624 33.333 27.63 27.63 44.15 2.90
251 252 6.859112 TTAGGATGTCATATCTAAGCTCCC 57.141 41.667 0.00 0.00 0.00 4.30
252 253 4.756564 AGGATGTCATATCTAAGCTCCCA 58.243 43.478 0.00 0.00 0.00 4.37
253 254 4.530161 AGGATGTCATATCTAAGCTCCCAC 59.470 45.833 0.00 0.00 0.00 4.61
254 255 4.284490 GGATGTCATATCTAAGCTCCCACA 59.716 45.833 0.00 0.00 0.00 4.17
255 256 5.221722 GGATGTCATATCTAAGCTCCCACAA 60.222 44.000 0.00 0.00 0.00 3.33
256 257 5.692115 TGTCATATCTAAGCTCCCACAAA 57.308 39.130 0.00 0.00 0.00 2.83
257 258 6.252599 TGTCATATCTAAGCTCCCACAAAT 57.747 37.500 0.00 0.00 0.00 2.32
258 259 7.373617 TGTCATATCTAAGCTCCCACAAATA 57.626 36.000 0.00 0.00 0.00 1.40
259 260 7.217200 TGTCATATCTAAGCTCCCACAAATAC 58.783 38.462 0.00 0.00 0.00 1.89
260 261 7.147567 TGTCATATCTAAGCTCCCACAAATACA 60.148 37.037 0.00 0.00 0.00 2.29
261 262 7.880195 GTCATATCTAAGCTCCCACAAATACAT 59.120 37.037 0.00 0.00 0.00 2.29
262 263 9.100197 TCATATCTAAGCTCCCACAAATACATA 57.900 33.333 0.00 0.00 0.00 2.29
263 264 9.896645 CATATCTAAGCTCCCACAAATACATAT 57.103 33.333 0.00 0.00 0.00 1.78
264 265 9.896645 ATATCTAAGCTCCCACAAATACATATG 57.103 33.333 0.00 0.00 0.00 1.78
265 266 5.997746 TCTAAGCTCCCACAAATACATATGC 59.002 40.000 1.58 0.00 0.00 3.14
266 267 4.169059 AGCTCCCACAAATACATATGCA 57.831 40.909 1.58 0.00 0.00 3.96
267 268 4.139786 AGCTCCCACAAATACATATGCAG 58.860 43.478 1.58 0.00 0.00 4.41
268 269 3.304928 GCTCCCACAAATACATATGCAGC 60.305 47.826 1.58 0.00 0.00 5.25
269 270 3.884693 CTCCCACAAATACATATGCAGCA 59.115 43.478 1.58 0.00 0.00 4.41
270 271 4.276642 TCCCACAAATACATATGCAGCAA 58.723 39.130 0.00 0.00 0.00 3.91
271 272 4.097741 TCCCACAAATACATATGCAGCAAC 59.902 41.667 0.00 0.00 0.00 4.17
272 273 4.142204 CCCACAAATACATATGCAGCAACA 60.142 41.667 0.00 0.00 0.00 3.33
273 274 5.409211 CCACAAATACATATGCAGCAACAA 58.591 37.500 0.00 0.00 0.00 2.83
274 275 5.517411 CCACAAATACATATGCAGCAACAAG 59.483 40.000 0.00 0.00 0.00 3.16
275 276 6.324042 CACAAATACATATGCAGCAACAAGA 58.676 36.000 0.00 0.00 0.00 3.02
276 277 6.807720 CACAAATACATATGCAGCAACAAGAA 59.192 34.615 0.00 0.00 0.00 2.52
277 278 7.328982 CACAAATACATATGCAGCAACAAGAAA 59.671 33.333 0.00 0.00 0.00 2.52
278 279 7.329226 ACAAATACATATGCAGCAACAAGAAAC 59.671 33.333 0.00 0.00 0.00 2.78
279 280 4.852134 ACATATGCAGCAACAAGAAACA 57.148 36.364 0.00 0.00 0.00 2.83
280 281 5.199024 ACATATGCAGCAACAAGAAACAA 57.801 34.783 0.00 0.00 0.00 2.83
281 282 5.599732 ACATATGCAGCAACAAGAAACAAA 58.400 33.333 0.00 0.00 0.00 2.83
282 283 6.047870 ACATATGCAGCAACAAGAAACAAAA 58.952 32.000 0.00 0.00 0.00 2.44
283 284 6.538021 ACATATGCAGCAACAAGAAACAAAAA 59.462 30.769 0.00 0.00 0.00 1.94
328 329 9.912634 ATAAACCACAAACAAAGTGAATATCAG 57.087 29.630 0.00 0.00 39.30 2.90
329 330 6.959639 ACCACAAACAAAGTGAATATCAGT 57.040 33.333 0.00 0.00 39.30 3.41
330 331 7.346751 ACCACAAACAAAGTGAATATCAGTT 57.653 32.000 0.00 0.00 41.46 3.16
332 333 8.908903 ACCACAAACAAAGTGAATATCAGTTTA 58.091 29.630 11.63 0.00 45.35 2.01
333 334 9.398170 CCACAAACAAAGTGAATATCAGTTTAG 57.602 33.333 11.63 9.39 45.35 1.85
339 340 9.725019 ACAAAGTGAATATCAGTTTAGATGTGA 57.275 29.630 11.63 0.00 45.35 3.58
340 341 9.979270 CAAAGTGAATATCAGTTTAGATGTGAC 57.021 33.333 11.63 0.00 45.35 3.67
341 342 9.725019 AAAGTGAATATCAGTTTAGATGTGACA 57.275 29.630 10.58 0.00 45.30 3.58
342 343 9.896645 AAGTGAATATCAGTTTAGATGTGACAT 57.103 29.630 0.00 0.00 36.70 3.06
381 382 6.723298 AGATGTATTCTAGACAGACCCAAG 57.277 41.667 0.00 0.00 30.96 3.61
382 383 4.737855 TGTATTCTAGACAGACCCAAGC 57.262 45.455 0.00 0.00 0.00 4.01
383 384 2.969628 ATTCTAGACAGACCCAAGCG 57.030 50.000 0.00 0.00 0.00 4.68
384 385 1.629043 TTCTAGACAGACCCAAGCGT 58.371 50.000 0.00 0.00 0.00 5.07
385 386 2.502142 TCTAGACAGACCCAAGCGTA 57.498 50.000 0.00 0.00 0.00 4.42
386 387 2.799017 TCTAGACAGACCCAAGCGTAA 58.201 47.619 0.00 0.00 0.00 3.18
387 388 3.159472 TCTAGACAGACCCAAGCGTAAA 58.841 45.455 0.00 0.00 0.00 2.01
388 389 2.457366 AGACAGACCCAAGCGTAAAG 57.543 50.000 0.00 0.00 0.00 1.85
433 434 0.630134 TTGCATGATGGATCCCACCA 59.370 50.000 9.90 4.75 44.41 4.17
435 436 0.475475 GCATGATGGATCCCACCAGA 59.525 55.000 9.90 0.00 43.49 3.86
441 442 0.979709 TGGATCCCACCAGAGAGCTG 60.980 60.000 9.90 0.00 41.93 4.24
485 486 2.295349 TCTCACCGTAATTATCTCCGGC 59.705 50.000 11.09 0.00 44.14 6.13
489 490 1.060713 CGTAATTATCTCCGGCAGCG 58.939 55.000 0.00 0.00 0.00 5.18
512 513 3.054503 GGCACAGCAGCAGGAGTG 61.055 66.667 0.00 0.00 35.83 3.51
526 527 3.077359 CAGGAGTGCAAAGGAAGGTAAG 58.923 50.000 0.00 0.00 0.00 2.34
528 529 2.814336 GGAGTGCAAAGGAAGGTAAGTG 59.186 50.000 0.00 0.00 0.00 3.16
541 542 7.583625 AGGAAGGTAAGTGAATAAATTAGGGG 58.416 38.462 0.00 0.00 0.00 4.79
542 543 6.776116 GGAAGGTAAGTGAATAAATTAGGGGG 59.224 42.308 0.00 0.00 0.00 5.40
571 572 0.802494 ACATGCGGCGAAGTAAAAGG 59.198 50.000 12.98 0.00 0.00 3.11
652 653 0.893727 GGCCGATCTCTCTCCCTCTC 60.894 65.000 0.00 0.00 0.00 3.20
653 654 0.893727 GCCGATCTCTCTCCCTCTCC 60.894 65.000 0.00 0.00 0.00 3.71
654 655 0.251165 CCGATCTCTCTCCCTCTCCC 60.251 65.000 0.00 0.00 0.00 4.30
655 656 0.771127 CGATCTCTCTCCCTCTCCCT 59.229 60.000 0.00 0.00 0.00 4.20
656 657 1.271379 CGATCTCTCTCCCTCTCCCTC 60.271 61.905 0.00 0.00 0.00 4.30
657 658 2.065799 GATCTCTCTCCCTCTCCCTCT 58.934 57.143 0.00 0.00 0.00 3.69
658 659 1.518367 TCTCTCTCCCTCTCCCTCTC 58.482 60.000 0.00 0.00 0.00 3.20
659 660 0.478507 CTCTCTCCCTCTCCCTCTCC 59.521 65.000 0.00 0.00 0.00 3.71
660 661 0.996762 TCTCTCCCTCTCCCTCTCCC 60.997 65.000 0.00 0.00 0.00 4.30
661 662 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
662 663 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
663 664 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
664 665 0.996762 TCCCTCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
665 666 1.541672 CCTCTCCCTCTCCCTCTCC 59.458 68.421 0.00 0.00 0.00 3.71
666 667 1.541672 CTCTCCCTCTCCCTCTCCC 59.458 68.421 0.00 0.00 0.00 4.30
667 668 0.998945 CTCTCCCTCTCCCTCTCCCT 60.999 65.000 0.00 0.00 0.00 4.20
668 669 0.996762 TCTCCCTCTCCCTCTCCCTC 60.997 65.000 0.00 0.00 0.00 4.30
669 670 0.998945 CTCCCTCTCCCTCTCCCTCT 60.999 65.000 0.00 0.00 0.00 3.69
684 685 1.818060 CCCTCTGTCTGTCTGTCTCTG 59.182 57.143 0.00 0.00 0.00 3.35
715 716 4.760047 CTGTTCCCAGCCCGTCCG 62.760 72.222 0.00 0.00 0.00 4.79
809 817 2.110188 AGTGGAGTTCTGAGGTGGTAGA 59.890 50.000 0.00 0.00 0.00 2.59
810 818 3.100671 GTGGAGTTCTGAGGTGGTAGAT 58.899 50.000 0.00 0.00 0.00 1.98
811 819 3.515901 GTGGAGTTCTGAGGTGGTAGATT 59.484 47.826 0.00 0.00 0.00 2.40
812 820 3.515502 TGGAGTTCTGAGGTGGTAGATTG 59.484 47.826 0.00 0.00 0.00 2.67
813 821 3.118592 GGAGTTCTGAGGTGGTAGATTGG 60.119 52.174 0.00 0.00 0.00 3.16
816 824 2.902608 TCTGAGGTGGTAGATTGGTGT 58.097 47.619 0.00 0.00 0.00 4.16
845 859 1.450211 CGGTGGTGGAGTTGGAGTT 59.550 57.895 0.00 0.00 0.00 3.01
846 860 0.884704 CGGTGGTGGAGTTGGAGTTG 60.885 60.000 0.00 0.00 0.00 3.16
870 884 1.563577 GGGTGGAAAGGAGGGAGGAC 61.564 65.000 0.00 0.00 0.00 3.85
876 890 0.910088 AAAGGAGGGAGGACGGAAGG 60.910 60.000 0.00 0.00 0.00 3.46
907 922 1.453155 GCCAGGAATAGTGTGTGGTG 58.547 55.000 0.00 0.00 0.00 4.17
917 932 4.250305 GTGTGGTGGAGTGGGCGT 62.250 66.667 0.00 0.00 0.00 5.68
1767 2695 1.513800 CAGTGTCGCTCGCTCTCAG 60.514 63.158 0.00 0.00 34.33 3.35
1811 2744 0.739813 ATTCGCAGCCTCGTAACCAC 60.740 55.000 0.00 0.00 0.00 4.16
1887 3257 2.046217 GGCCGAGGTCCAACTTCC 60.046 66.667 0.00 0.00 0.00 3.46
2161 3547 4.399303 GGTAGATTCAGGGGAATGTTTGTG 59.601 45.833 0.00 0.00 43.69 3.33
2171 3557 4.765339 GGGGAATGTTTGTGCTACTACTTT 59.235 41.667 0.00 0.00 0.00 2.66
2235 3636 5.291371 TGATTTGTCAATTGTGTTGCTGTTG 59.709 36.000 5.13 0.00 0.00 3.33
2237 3638 4.185467 TGTCAATTGTGTTGCTGTTGTT 57.815 36.364 5.13 0.00 0.00 2.83
2296 3697 3.314080 GGTCGTTTGTGAACAAGGATGAA 59.686 43.478 0.00 0.00 37.15 2.57
2579 3991 7.081349 TGAATAGGTTATTTGAAAGTTGTGCG 58.919 34.615 0.00 0.00 0.00 5.34
2580 3992 3.638484 AGGTTATTTGAAAGTTGTGCGC 58.362 40.909 0.00 0.00 0.00 6.09
2617 4031 7.362662 TGAGCTGAAATGTTTGTCTTAATGTC 58.637 34.615 0.00 0.00 0.00 3.06
2751 4165 2.159627 GTCCAAGGTGTTGTTATGCTCG 59.840 50.000 0.00 0.00 30.95 5.03
2763 4177 3.313803 TGTTATGCTCGTTTTCTTGCACA 59.686 39.130 0.00 0.00 38.29 4.57
2764 4178 2.405892 ATGCTCGTTTTCTTGCACAC 57.594 45.000 0.00 0.00 38.29 3.82
2771 4195 4.940463 TCGTTTTCTTGCACACTACTACT 58.060 39.130 0.00 0.00 0.00 2.57
2829 4253 2.531206 GTGAGACGTGCTCCACTAATC 58.469 52.381 0.00 0.00 43.26 1.75
2845 4272 5.036737 CACTAATCTTAAAATTGCTGGCGG 58.963 41.667 0.00 0.00 0.00 6.13
2862 4289 3.500680 TGGCGGAAACTCTGAAATGTTAC 59.499 43.478 0.00 0.00 0.00 2.50
2947 4381 5.048991 CGGTTGCTTAGGTTACACTTTGAAT 60.049 40.000 0.00 0.00 0.00 2.57
2954 4388 7.910683 GCTTAGGTTACACTTTGAATATGCTTC 59.089 37.037 0.00 0.00 0.00 3.86
2974 4408 1.741706 CGTCATCATTTGCCTTCAGCT 59.258 47.619 0.00 0.00 44.23 4.24
2975 4409 2.477357 CGTCATCATTTGCCTTCAGCTG 60.477 50.000 7.63 7.63 44.23 4.24
3019 4520 4.870991 GTGCTCCCTCTGTAACTTAATGTC 59.129 45.833 0.00 0.00 0.00 3.06
3026 4527 6.758886 CCCTCTGTAACTTAATGTCAGACATC 59.241 42.308 16.69 3.08 37.97 3.06
3032 4533 5.536554 ACTTAATGTCAGACATCTTTGCG 57.463 39.130 16.69 5.36 37.97 4.85
3079 4583 8.457261 ACGTCTTACATTAAGTTACAGAGGTAG 58.543 37.037 0.00 0.00 37.10 3.18
3094 4598 5.533903 ACAGAGGTAGTATATAACACCGTGG 59.466 44.000 3.03 9.82 35.58 4.94
3095 4599 5.533903 CAGAGGTAGTATATAACACCGTGGT 59.466 44.000 3.03 0.00 35.58 4.16
3141 4661 6.979701 AATTTAAATTCGTGACGGTGTTTC 57.020 33.333 4.70 0.00 0.00 2.78
3145 4665 4.561735 AATTCGTGACGGTGTTTCAAAT 57.438 36.364 4.70 0.00 0.00 2.32
3150 4670 4.512198 TCGTGACGGTGTTTCAAATGTAAT 59.488 37.500 4.70 0.00 0.00 1.89
3356 5632 2.307768 CTCCGGAAGCTGATACTACCA 58.692 52.381 5.23 0.00 0.00 3.25
3492 5768 4.323477 TGCCGTCCCCAAAGTCGG 62.323 66.667 0.00 0.00 44.86 4.79
3614 5890 0.765510 GGGTGGTGACCAAGAAGTCT 59.234 55.000 5.57 0.00 45.25 3.24
3735 6011 0.747283 GCTGATGGTGCTGAAGGAGG 60.747 60.000 0.00 0.00 0.00 4.30
3741 6017 1.078567 GTGCTGAAGGAGGAGCAGG 60.079 63.158 0.00 0.00 45.70 4.85
3854 6133 3.043713 CGCAGCCTGCTGACGAAA 61.044 61.111 22.64 0.00 46.30 3.46
3962 6247 6.772716 AGTGAGAAAATGTAAACATGGACACT 59.227 34.615 0.00 0.00 36.56 3.55
3963 6248 6.857964 GTGAGAAAATGTAAACATGGACACTG 59.142 38.462 0.00 0.00 36.56 3.66
3964 6249 6.770303 TGAGAAAATGTAAACATGGACACTGA 59.230 34.615 0.00 0.00 36.56 3.41
3965 6250 7.448161 TGAGAAAATGTAAACATGGACACTGAT 59.552 33.333 0.00 0.00 36.56 2.90
3966 6251 7.820648 AGAAAATGTAAACATGGACACTGATC 58.179 34.615 0.00 0.00 36.56 2.92
4102 6388 3.493176 CCCGCACATGAGATGTATTCTGA 60.493 47.826 0.00 0.00 42.70 3.27
4124 6410 2.290641 AGAAGTTGTCCGAAACACATGC 59.709 45.455 0.00 0.00 37.70 4.06
4294 6580 0.540365 TTCCTTCAAGCTTGCCTGGG 60.540 55.000 21.99 18.09 0.00 4.45
4780 8899 6.046593 CCGTGTTCTAGGCATTATCTTACAA 58.953 40.000 0.00 0.00 0.00 2.41
4864 8986 9.739276 TCATACTTCAGTTATTTCACTTTCCAT 57.261 29.630 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.729124 ACTTCTGTGGGTAAGCTATACTAAA 57.271 36.000 0.00 0.00 0.00 1.85
1 2 7.729124 AACTTCTGTGGGTAAGCTATACTAA 57.271 36.000 0.00 0.00 0.00 2.24
2 3 8.057623 AGTAACTTCTGTGGGTAAGCTATACTA 58.942 37.037 0.00 0.00 0.00 1.82
3 4 6.896307 AGTAACTTCTGTGGGTAAGCTATACT 59.104 38.462 0.00 0.00 0.00 2.12
5 6 8.057623 AGTAGTAACTTCTGTGGGTAAGCTATA 58.942 37.037 0.00 0.00 29.00 1.31
6 7 6.896307 AGTAGTAACTTCTGTGGGTAAGCTAT 59.104 38.462 0.00 0.00 29.00 2.97
7 8 6.251471 AGTAGTAACTTCTGTGGGTAAGCTA 58.749 40.000 0.00 0.00 29.00 3.32
8 9 5.085219 AGTAGTAACTTCTGTGGGTAAGCT 58.915 41.667 0.00 0.00 29.00 3.74
9 10 5.402997 AGTAGTAACTTCTGTGGGTAAGC 57.597 43.478 0.00 0.00 29.00 3.09
10 11 6.989659 TCAAGTAGTAACTTCTGTGGGTAAG 58.010 40.000 0.00 0.00 44.28 2.34
11 12 6.982160 TCAAGTAGTAACTTCTGTGGGTAA 57.018 37.500 0.00 0.00 44.28 2.85
12 13 6.982160 TTCAAGTAGTAACTTCTGTGGGTA 57.018 37.500 0.00 0.00 44.28 3.69
13 14 5.881923 TTCAAGTAGTAACTTCTGTGGGT 57.118 39.130 0.00 0.00 44.28 4.51
14 15 6.292703 CGTTTTCAAGTAGTAACTTCTGTGGG 60.293 42.308 0.00 0.00 44.28 4.61
15 16 6.257193 ACGTTTTCAAGTAGTAACTTCTGTGG 59.743 38.462 0.00 0.00 44.28 4.17
16 17 7.230466 ACGTTTTCAAGTAGTAACTTCTGTG 57.770 36.000 0.00 0.00 44.28 3.66
17 18 8.931385 TTACGTTTTCAAGTAGTAACTTCTGT 57.069 30.769 0.00 0.00 44.28 3.41
42 43 7.857734 CCCACAGGTTTTATTTTGACTTTTT 57.142 32.000 0.00 0.00 0.00 1.94
59 60 0.036671 GTTTCCGGAGTACCCACAGG 60.037 60.000 3.34 0.00 40.04 4.00
60 61 0.974383 AGTTTCCGGAGTACCCACAG 59.026 55.000 3.34 0.00 34.14 3.66
61 62 1.071071 CAAGTTTCCGGAGTACCCACA 59.929 52.381 3.34 0.00 34.14 4.17
62 63 1.345415 TCAAGTTTCCGGAGTACCCAC 59.655 52.381 3.34 0.00 34.14 4.61
63 64 1.719529 TCAAGTTTCCGGAGTACCCA 58.280 50.000 3.34 0.00 34.14 4.51
64 65 2.224354 TGTTCAAGTTTCCGGAGTACCC 60.224 50.000 3.34 0.00 0.00 3.69
65 66 3.116079 TGTTCAAGTTTCCGGAGTACC 57.884 47.619 3.34 0.00 0.00 3.34
66 67 3.497262 CCTTGTTCAAGTTTCCGGAGTAC 59.503 47.826 3.34 7.51 0.00 2.73
67 68 3.388676 TCCTTGTTCAAGTTTCCGGAGTA 59.611 43.478 3.34 0.00 0.00 2.59
68 69 2.171870 TCCTTGTTCAAGTTTCCGGAGT 59.828 45.455 3.34 0.00 0.00 3.85
69 70 2.846193 TCCTTGTTCAAGTTTCCGGAG 58.154 47.619 3.34 0.00 0.00 4.63
70 71 3.211045 CTTCCTTGTTCAAGTTTCCGGA 58.789 45.455 0.00 0.00 0.00 5.14
71 72 2.287608 GCTTCCTTGTTCAAGTTTCCGG 60.288 50.000 10.93 0.00 0.00 5.14
72 73 2.602217 CGCTTCCTTGTTCAAGTTTCCG 60.602 50.000 10.93 5.54 0.00 4.30
73 74 2.616842 TCGCTTCCTTGTTCAAGTTTCC 59.383 45.455 10.93 0.00 0.00 3.13
74 75 3.850010 GCTCGCTTCCTTGTTCAAGTTTC 60.850 47.826 10.93 0.00 0.00 2.78
75 76 2.033424 GCTCGCTTCCTTGTTCAAGTTT 59.967 45.455 10.93 0.00 0.00 2.66
76 77 1.604278 GCTCGCTTCCTTGTTCAAGTT 59.396 47.619 10.93 0.00 0.00 2.66
77 78 1.230324 GCTCGCTTCCTTGTTCAAGT 58.770 50.000 10.93 0.00 0.00 3.16
78 79 1.069636 GTGCTCGCTTCCTTGTTCAAG 60.070 52.381 5.66 5.66 0.00 3.02
79 80 0.944386 GTGCTCGCTTCCTTGTTCAA 59.056 50.000 0.00 0.00 0.00 2.69
80 81 0.179059 TGTGCTCGCTTCCTTGTTCA 60.179 50.000 0.00 0.00 0.00 3.18
81 82 0.944386 TTGTGCTCGCTTCCTTGTTC 59.056 50.000 0.00 0.00 0.00 3.18
82 83 1.267806 CATTGTGCTCGCTTCCTTGTT 59.732 47.619 0.00 0.00 0.00 2.83
83 84 0.877071 CATTGTGCTCGCTTCCTTGT 59.123 50.000 0.00 0.00 0.00 3.16
84 85 0.169672 CCATTGTGCTCGCTTCCTTG 59.830 55.000 0.00 0.00 0.00 3.61
85 86 0.036732 TCCATTGTGCTCGCTTCCTT 59.963 50.000 0.00 0.00 0.00 3.36
86 87 0.254178 ATCCATTGTGCTCGCTTCCT 59.746 50.000 0.00 0.00 0.00 3.36
87 88 0.379669 CATCCATTGTGCTCGCTTCC 59.620 55.000 0.00 0.00 0.00 3.46
88 89 1.372582 TCATCCATTGTGCTCGCTTC 58.627 50.000 0.00 0.00 0.00 3.86
89 90 2.048444 ATCATCCATTGTGCTCGCTT 57.952 45.000 0.00 0.00 0.00 4.68
90 91 2.916702 TATCATCCATTGTGCTCGCT 57.083 45.000 0.00 0.00 0.00 4.93
91 92 3.059325 GTCTTATCATCCATTGTGCTCGC 60.059 47.826 0.00 0.00 0.00 5.03
92 93 4.375272 AGTCTTATCATCCATTGTGCTCG 58.625 43.478 0.00 0.00 0.00 5.03
93 94 6.690194 AAAGTCTTATCATCCATTGTGCTC 57.310 37.500 0.00 0.00 0.00 4.26
94 95 6.258727 CGTAAAGTCTTATCATCCATTGTGCT 59.741 38.462 0.00 0.00 0.00 4.40
95 96 6.422223 CGTAAAGTCTTATCATCCATTGTGC 58.578 40.000 0.00 0.00 0.00 4.57
96 97 6.761242 TCCGTAAAGTCTTATCATCCATTGTG 59.239 38.462 0.00 0.00 0.00 3.33
97 98 6.761714 GTCCGTAAAGTCTTATCATCCATTGT 59.238 38.462 0.00 0.00 0.00 2.71
98 99 6.761242 TGTCCGTAAAGTCTTATCATCCATTG 59.239 38.462 0.00 0.00 0.00 2.82
99 100 6.884832 TGTCCGTAAAGTCTTATCATCCATT 58.115 36.000 0.00 0.00 0.00 3.16
100 101 6.479972 TGTCCGTAAAGTCTTATCATCCAT 57.520 37.500 0.00 0.00 0.00 3.41
101 102 5.925506 TGTCCGTAAAGTCTTATCATCCA 57.074 39.130 0.00 0.00 0.00 3.41
102 103 6.513180 TCATGTCCGTAAAGTCTTATCATCC 58.487 40.000 0.00 0.00 0.00 3.51
103 104 8.420374 TTTCATGTCCGTAAAGTCTTATCATC 57.580 34.615 0.00 0.00 0.00 2.92
104 105 8.786826 TTTTCATGTCCGTAAAGTCTTATCAT 57.213 30.769 0.00 0.00 0.00 2.45
105 106 8.786826 ATTTTCATGTCCGTAAAGTCTTATCA 57.213 30.769 0.00 0.00 0.00 2.15
109 110 9.886132 ACTATATTTTCATGTCCGTAAAGTCTT 57.114 29.630 0.00 0.00 0.00 3.01
130 131 8.301002 GCATGTTTCACCCTTTTGTTTACTATA 58.699 33.333 0.00 0.00 0.00 1.31
131 132 7.151976 GCATGTTTCACCCTTTTGTTTACTAT 58.848 34.615 0.00 0.00 0.00 2.12
132 133 6.096987 TGCATGTTTCACCCTTTTGTTTACTA 59.903 34.615 0.00 0.00 0.00 1.82
133 134 5.105146 TGCATGTTTCACCCTTTTGTTTACT 60.105 36.000 0.00 0.00 0.00 2.24
134 135 5.006261 GTGCATGTTTCACCCTTTTGTTTAC 59.994 40.000 0.00 0.00 0.00 2.01
135 136 5.112686 GTGCATGTTTCACCCTTTTGTTTA 58.887 37.500 0.00 0.00 0.00 2.01
136 137 3.938334 GTGCATGTTTCACCCTTTTGTTT 59.062 39.130 0.00 0.00 0.00 2.83
137 138 3.530535 GTGCATGTTTCACCCTTTTGTT 58.469 40.909 0.00 0.00 0.00 2.83
138 139 2.481104 CGTGCATGTTTCACCCTTTTGT 60.481 45.455 0.00 0.00 0.00 2.83
139 140 2.126467 CGTGCATGTTTCACCCTTTTG 58.874 47.619 0.00 0.00 0.00 2.44
140 141 1.068434 CCGTGCATGTTTCACCCTTTT 59.932 47.619 4.96 0.00 0.00 2.27
141 142 0.673437 CCGTGCATGTTTCACCCTTT 59.327 50.000 4.96 0.00 0.00 3.11
142 143 1.178534 CCCGTGCATGTTTCACCCTT 61.179 55.000 4.96 0.00 0.00 3.95
143 144 1.603455 CCCGTGCATGTTTCACCCT 60.603 57.895 4.96 0.00 0.00 4.34
144 145 2.961768 CCCGTGCATGTTTCACCC 59.038 61.111 4.96 0.00 0.00 4.61
145 146 1.805428 AAGCCCGTGCATGTTTCACC 61.805 55.000 4.96 0.00 41.13 4.02
146 147 0.031994 AAAGCCCGTGCATGTTTCAC 59.968 50.000 4.96 0.00 41.13 3.18
147 148 1.610363 TAAAGCCCGTGCATGTTTCA 58.390 45.000 4.96 0.00 41.13 2.69
148 149 2.939460 ATAAAGCCCGTGCATGTTTC 57.061 45.000 4.96 0.00 41.13 2.78
149 150 3.676291 AAATAAAGCCCGTGCATGTTT 57.324 38.095 4.96 1.84 41.13 2.83
150 151 3.244044 ACAAAATAAAGCCCGTGCATGTT 60.244 39.130 4.96 0.00 41.13 2.71
151 152 2.298729 ACAAAATAAAGCCCGTGCATGT 59.701 40.909 4.96 0.00 41.13 3.21
152 153 2.958213 ACAAAATAAAGCCCGTGCATG 58.042 42.857 0.00 0.00 41.13 4.06
153 154 3.324993 CAACAAAATAAAGCCCGTGCAT 58.675 40.909 0.00 0.00 41.13 3.96
154 155 2.546795 CCAACAAAATAAAGCCCGTGCA 60.547 45.455 0.00 0.00 41.13 4.57
155 156 2.065512 CCAACAAAATAAAGCCCGTGC 58.934 47.619 0.00 0.00 37.95 5.34
156 157 3.651803 TCCAACAAAATAAAGCCCGTG 57.348 42.857 0.00 0.00 0.00 4.94
157 158 4.627058 CTTTCCAACAAAATAAAGCCCGT 58.373 39.130 0.00 0.00 0.00 5.28
158 159 3.431912 GCTTTCCAACAAAATAAAGCCCG 59.568 43.478 7.27 0.00 45.05 6.13
162 163 6.147656 GGTCCATGCTTTCCAACAAAATAAAG 59.852 38.462 0.00 0.00 33.15 1.85
163 164 5.994668 GGTCCATGCTTTCCAACAAAATAAA 59.005 36.000 0.00 0.00 0.00 1.40
164 165 5.070981 TGGTCCATGCTTTCCAACAAAATAA 59.929 36.000 0.00 0.00 0.00 1.40
165 166 4.590647 TGGTCCATGCTTTCCAACAAAATA 59.409 37.500 0.00 0.00 0.00 1.40
166 167 3.390639 TGGTCCATGCTTTCCAACAAAAT 59.609 39.130 0.00 0.00 0.00 1.82
167 168 2.768527 TGGTCCATGCTTTCCAACAAAA 59.231 40.909 0.00 0.00 0.00 2.44
168 169 2.392662 TGGTCCATGCTTTCCAACAAA 58.607 42.857 0.00 0.00 0.00 2.83
169 170 2.079170 TGGTCCATGCTTTCCAACAA 57.921 45.000 0.00 0.00 0.00 2.83
170 171 2.079170 TTGGTCCATGCTTTCCAACA 57.921 45.000 0.00 0.00 35.42 3.33
171 172 2.365293 ACTTTGGTCCATGCTTTCCAAC 59.635 45.455 0.00 0.00 39.26 3.77
172 173 2.364970 CACTTTGGTCCATGCTTTCCAA 59.635 45.455 0.00 0.00 38.04 3.53
173 174 1.962807 CACTTTGGTCCATGCTTTCCA 59.037 47.619 0.00 0.00 0.00 3.53
174 175 1.963515 ACACTTTGGTCCATGCTTTCC 59.036 47.619 0.00 0.00 0.00 3.13
175 176 4.037446 TGTTACACTTTGGTCCATGCTTTC 59.963 41.667 0.00 0.00 0.00 2.62
176 177 3.957497 TGTTACACTTTGGTCCATGCTTT 59.043 39.130 0.00 0.00 0.00 3.51
177 178 3.561143 TGTTACACTTTGGTCCATGCTT 58.439 40.909 0.00 0.00 0.00 3.91
178 179 3.149196 CTGTTACACTTTGGTCCATGCT 58.851 45.455 0.00 0.00 0.00 3.79
179 180 2.884639 ACTGTTACACTTTGGTCCATGC 59.115 45.455 0.00 0.00 0.00 4.06
180 181 5.067153 TCAAACTGTTACACTTTGGTCCATG 59.933 40.000 14.27 0.00 0.00 3.66
181 182 5.067283 GTCAAACTGTTACACTTTGGTCCAT 59.933 40.000 14.27 0.00 0.00 3.41
182 183 4.396790 GTCAAACTGTTACACTTTGGTCCA 59.603 41.667 14.27 0.00 0.00 4.02
183 184 4.638865 AGTCAAACTGTTACACTTTGGTCC 59.361 41.667 14.27 6.29 0.00 4.46
184 185 5.813080 AGTCAAACTGTTACACTTTGGTC 57.187 39.130 14.27 9.71 0.00 4.02
185 186 7.875327 ATTAGTCAAACTGTTACACTTTGGT 57.125 32.000 14.27 7.56 0.00 3.67
186 187 8.402472 TGAATTAGTCAAACTGTTACACTTTGG 58.598 33.333 14.27 0.00 31.51 3.28
187 188 9.221775 GTGAATTAGTCAAACTGTTACACTTTG 57.778 33.333 9.97 9.97 38.23 2.77
188 189 8.952278 TGTGAATTAGTCAAACTGTTACACTTT 58.048 29.630 8.97 0.86 38.23 2.66
189 190 8.500753 TGTGAATTAGTCAAACTGTTACACTT 57.499 30.769 8.97 0.00 38.23 3.16
190 191 8.677148 ATGTGAATTAGTCAAACTGTTACACT 57.323 30.769 8.76 8.76 38.23 3.55
191 192 8.774586 AGATGTGAATTAGTCAAACTGTTACAC 58.225 33.333 0.00 0.00 38.23 2.90
192 193 8.902540 AGATGTGAATTAGTCAAACTGTTACA 57.097 30.769 0.00 0.00 38.23 2.41
195 196 9.950496 ATCTAGATGTGAATTAGTCAAACTGTT 57.050 29.630 3.89 0.00 38.23 3.16
196 197 9.376075 CATCTAGATGTGAATTAGTCAAACTGT 57.624 33.333 22.42 0.00 38.23 3.55
225 226 8.157476 GGGAGCTTAGATATGACATCCTAAAAA 58.843 37.037 0.00 0.00 0.00 1.94
226 227 7.292356 TGGGAGCTTAGATATGACATCCTAAAA 59.708 37.037 0.00 0.00 0.00 1.52
227 228 6.787458 TGGGAGCTTAGATATGACATCCTAAA 59.213 38.462 0.00 0.00 0.00 1.85
228 229 6.211584 GTGGGAGCTTAGATATGACATCCTAA 59.788 42.308 0.00 1.05 0.00 2.69
229 230 5.717178 GTGGGAGCTTAGATATGACATCCTA 59.283 44.000 0.00 0.00 0.00 2.94
230 231 4.530161 GTGGGAGCTTAGATATGACATCCT 59.470 45.833 0.00 0.00 0.00 3.24
231 232 4.284490 TGTGGGAGCTTAGATATGACATCC 59.716 45.833 0.00 0.00 0.00 3.51
232 233 5.474578 TGTGGGAGCTTAGATATGACATC 57.525 43.478 0.00 0.00 0.00 3.06
233 234 5.894298 TTGTGGGAGCTTAGATATGACAT 57.106 39.130 0.00 0.00 0.00 3.06
234 235 5.692115 TTTGTGGGAGCTTAGATATGACA 57.308 39.130 0.00 0.00 0.00 3.58
235 236 7.217200 TGTATTTGTGGGAGCTTAGATATGAC 58.783 38.462 0.00 0.00 0.00 3.06
236 237 7.373617 TGTATTTGTGGGAGCTTAGATATGA 57.626 36.000 0.00 0.00 0.00 2.15
237 238 9.896645 ATATGTATTTGTGGGAGCTTAGATATG 57.103 33.333 0.00 0.00 0.00 1.78
238 239 9.896645 CATATGTATTTGTGGGAGCTTAGATAT 57.103 33.333 0.00 0.00 0.00 1.63
239 240 7.824289 GCATATGTATTTGTGGGAGCTTAGATA 59.176 37.037 4.29 0.00 0.00 1.98
240 241 6.656693 GCATATGTATTTGTGGGAGCTTAGAT 59.343 38.462 4.29 0.00 0.00 1.98
241 242 5.997746 GCATATGTATTTGTGGGAGCTTAGA 59.002 40.000 4.29 0.00 0.00 2.10
242 243 5.764686 TGCATATGTATTTGTGGGAGCTTAG 59.235 40.000 4.29 0.00 0.00 2.18
243 244 5.689835 TGCATATGTATTTGTGGGAGCTTA 58.310 37.500 4.29 0.00 0.00 3.09
244 245 4.535781 TGCATATGTATTTGTGGGAGCTT 58.464 39.130 4.29 0.00 0.00 3.74
245 246 4.139786 CTGCATATGTATTTGTGGGAGCT 58.860 43.478 4.29 0.00 0.00 4.09
246 247 3.304928 GCTGCATATGTATTTGTGGGAGC 60.305 47.826 4.29 0.00 0.00 4.70
247 248 3.884693 TGCTGCATATGTATTTGTGGGAG 59.115 43.478 0.00 0.00 0.00 4.30
248 249 3.895998 TGCTGCATATGTATTTGTGGGA 58.104 40.909 0.00 0.00 0.00 4.37
249 250 4.142204 TGTTGCTGCATATGTATTTGTGGG 60.142 41.667 1.84 0.00 0.00 4.61
250 251 4.996344 TGTTGCTGCATATGTATTTGTGG 58.004 39.130 1.84 0.00 0.00 4.17
251 252 6.324042 TCTTGTTGCTGCATATGTATTTGTG 58.676 36.000 1.84 0.00 0.00 3.33
252 253 6.513806 TCTTGTTGCTGCATATGTATTTGT 57.486 33.333 1.84 0.00 0.00 2.83
253 254 7.328982 TGTTTCTTGTTGCTGCATATGTATTTG 59.671 33.333 1.84 0.00 0.00 2.32
254 255 7.377398 TGTTTCTTGTTGCTGCATATGTATTT 58.623 30.769 1.84 0.00 0.00 1.40
255 256 6.923012 TGTTTCTTGTTGCTGCATATGTATT 58.077 32.000 1.84 0.00 0.00 1.89
256 257 6.513806 TGTTTCTTGTTGCTGCATATGTAT 57.486 33.333 1.84 0.00 0.00 2.29
257 258 5.956068 TGTTTCTTGTTGCTGCATATGTA 57.044 34.783 1.84 0.00 0.00 2.29
258 259 4.852134 TGTTTCTTGTTGCTGCATATGT 57.148 36.364 1.84 0.00 0.00 2.29
259 260 6.528014 TTTTGTTTCTTGTTGCTGCATATG 57.472 33.333 1.84 0.00 0.00 1.78
302 303 9.912634 CTGATATTCACTTTGTTTGTGGTTTAT 57.087 29.630 0.00 0.00 36.21 1.40
303 304 8.908903 ACTGATATTCACTTTGTTTGTGGTTTA 58.091 29.630 0.00 0.00 36.21 2.01
304 305 7.781056 ACTGATATTCACTTTGTTTGTGGTTT 58.219 30.769 0.00 0.00 36.21 3.27
305 306 7.346751 ACTGATATTCACTTTGTTTGTGGTT 57.653 32.000 0.00 0.00 36.21 3.67
306 307 6.959639 ACTGATATTCACTTTGTTTGTGGT 57.040 33.333 0.00 0.00 36.21 4.16
307 308 9.398170 CTAAACTGATATTCACTTTGTTTGTGG 57.602 33.333 0.00 0.00 36.21 4.17
313 314 9.725019 TCACATCTAAACTGATATTCACTTTGT 57.275 29.630 0.00 0.00 0.00 2.83
314 315 9.979270 GTCACATCTAAACTGATATTCACTTTG 57.021 33.333 0.00 0.00 0.00 2.77
315 316 9.725019 TGTCACATCTAAACTGATATTCACTTT 57.275 29.630 0.00 0.00 0.00 2.66
316 317 9.896645 ATGTCACATCTAAACTGATATTCACTT 57.103 29.630 0.00 0.00 0.00 3.16
357 358 6.265649 GCTTGGGTCTGTCTAGAATACATCTA 59.734 42.308 0.00 0.00 39.71 1.98
358 359 5.069781 GCTTGGGTCTGTCTAGAATACATCT 59.930 44.000 0.00 0.00 42.48 2.90
359 360 5.293560 GCTTGGGTCTGTCTAGAATACATC 58.706 45.833 0.00 0.00 34.01 3.06
360 361 4.202161 CGCTTGGGTCTGTCTAGAATACAT 60.202 45.833 0.00 0.00 34.01 2.29
361 362 3.130516 CGCTTGGGTCTGTCTAGAATACA 59.869 47.826 0.00 0.00 34.01 2.29
362 363 3.130693 ACGCTTGGGTCTGTCTAGAATAC 59.869 47.826 0.00 0.00 34.01 1.89
363 364 3.362706 ACGCTTGGGTCTGTCTAGAATA 58.637 45.455 0.00 0.00 34.01 1.75
364 365 2.180276 ACGCTTGGGTCTGTCTAGAAT 58.820 47.619 0.00 0.00 34.01 2.40
365 366 1.629043 ACGCTTGGGTCTGTCTAGAA 58.371 50.000 0.00 0.00 34.01 2.10
366 367 2.502142 TACGCTTGGGTCTGTCTAGA 57.498 50.000 0.00 0.00 0.00 2.43
367 368 3.512680 CTTTACGCTTGGGTCTGTCTAG 58.487 50.000 0.00 0.00 0.00 2.43
368 369 2.353406 GCTTTACGCTTGGGTCTGTCTA 60.353 50.000 0.00 0.00 35.14 2.59
369 370 1.608283 GCTTTACGCTTGGGTCTGTCT 60.608 52.381 0.00 0.00 35.14 3.41
370 371 0.796927 GCTTTACGCTTGGGTCTGTC 59.203 55.000 0.00 0.00 35.14 3.51
371 372 0.605589 GGCTTTACGCTTGGGTCTGT 60.606 55.000 0.00 0.00 39.13 3.41
372 373 1.635663 CGGCTTTACGCTTGGGTCTG 61.636 60.000 0.00 0.00 39.13 3.51
373 374 1.375523 CGGCTTTACGCTTGGGTCT 60.376 57.895 0.00 0.00 39.13 3.85
374 375 1.359459 CTCGGCTTTACGCTTGGGTC 61.359 60.000 0.00 0.00 39.13 4.46
375 376 1.375523 CTCGGCTTTACGCTTGGGT 60.376 57.895 0.00 0.00 39.13 4.51
376 377 2.106683 CCTCGGCTTTACGCTTGGG 61.107 63.158 0.00 0.00 39.13 4.12
377 378 2.750888 GCCTCGGCTTTACGCTTGG 61.751 63.158 0.00 0.00 39.13 3.61
378 379 2.785258 GCCTCGGCTTTACGCTTG 59.215 61.111 0.00 0.00 39.13 4.01
394 395 2.510691 GCATTGCATGGCACCAGC 60.511 61.111 3.15 0.00 38.71 4.85
395 396 0.107897 ATTGCATTGCATGGCACCAG 60.108 50.000 12.95 0.00 40.23 4.00
396 397 0.325272 AATTGCATTGCATGGCACCA 59.675 45.000 12.95 0.00 40.23 4.17
397 398 0.730265 CAATTGCATTGCATGGCACC 59.270 50.000 12.95 0.00 40.23 5.01
433 434 1.722034 TTCCTGTGGTTCAGCTCTCT 58.278 50.000 0.00 0.00 42.38 3.10
435 436 1.541233 CGTTTCCTGTGGTTCAGCTCT 60.541 52.381 0.00 0.00 42.38 4.09
441 442 1.155424 TCACGCGTTTCCTGTGGTTC 61.155 55.000 10.22 0.00 34.43 3.62
497 498 1.449726 TTTGCACTCCTGCTGCTGTG 61.450 55.000 0.00 6.28 44.57 3.66
498 499 1.152902 TTTGCACTCCTGCTGCTGT 60.153 52.632 0.00 0.00 44.57 4.40
512 513 9.788960 CTAATTTATTCACTTACCTTCCTTTGC 57.211 33.333 0.00 0.00 0.00 3.68
514 515 9.475620 CCCTAATTTATTCACTTACCTTCCTTT 57.524 33.333 0.00 0.00 0.00 3.11
541 542 1.663379 GCCGCATGTCCTTTTACCCC 61.663 60.000 0.00 0.00 0.00 4.95
542 543 1.807226 GCCGCATGTCCTTTTACCC 59.193 57.895 0.00 0.00 0.00 3.69
543 544 1.022451 TCGCCGCATGTCCTTTTACC 61.022 55.000 0.00 0.00 0.00 2.85
544 545 0.800012 TTCGCCGCATGTCCTTTTAC 59.200 50.000 0.00 0.00 0.00 2.01
545 546 1.083489 CTTCGCCGCATGTCCTTTTA 58.917 50.000 0.00 0.00 0.00 1.52
571 572 2.422479 GTCTTTCCCTGCGTTAATTCCC 59.578 50.000 0.00 0.00 0.00 3.97
652 653 1.232792 CAGAGGGAGAGGGAGAGGG 59.767 68.421 0.00 0.00 0.00 4.30
653 654 0.106217 GACAGAGGGAGAGGGAGAGG 60.106 65.000 0.00 0.00 0.00 3.69
654 655 0.926293 AGACAGAGGGAGAGGGAGAG 59.074 60.000 0.00 0.00 0.00 3.20
655 656 0.628522 CAGACAGAGGGAGAGGGAGA 59.371 60.000 0.00 0.00 0.00 3.71
656 657 0.334676 ACAGACAGAGGGAGAGGGAG 59.665 60.000 0.00 0.00 0.00 4.30
657 658 0.333312 GACAGACAGAGGGAGAGGGA 59.667 60.000 0.00 0.00 0.00 4.20
658 659 0.334676 AGACAGACAGAGGGAGAGGG 59.665 60.000 0.00 0.00 0.00 4.30
659 660 1.272425 ACAGACAGACAGAGGGAGAGG 60.272 57.143 0.00 0.00 0.00 3.69
660 661 2.091541 GACAGACAGACAGAGGGAGAG 58.908 57.143 0.00 0.00 0.00 3.20
661 662 1.707989 AGACAGACAGACAGAGGGAGA 59.292 52.381 0.00 0.00 0.00 3.71
662 663 2.091541 GAGACAGACAGACAGAGGGAG 58.908 57.143 0.00 0.00 0.00 4.30
663 664 1.707989 AGAGACAGACAGACAGAGGGA 59.292 52.381 0.00 0.00 0.00 4.20
664 665 1.818060 CAGAGACAGACAGACAGAGGG 59.182 57.143 0.00 0.00 0.00 4.30
665 666 1.818060 CCAGAGACAGACAGACAGAGG 59.182 57.143 0.00 0.00 0.00 3.69
666 667 2.749076 CTCCAGAGACAGACAGACAGAG 59.251 54.545 0.00 0.00 0.00 3.35
667 668 2.373502 TCTCCAGAGACAGACAGACAGA 59.626 50.000 0.00 0.00 31.41 3.41
668 669 2.789213 TCTCCAGAGACAGACAGACAG 58.211 52.381 0.00 0.00 31.41 3.51
669 670 2.959465 TCTCCAGAGACAGACAGACA 57.041 50.000 0.00 0.00 31.41 3.41
684 685 3.612371 AACAGCTCGACGCGTCTCC 62.612 63.158 33.94 21.82 45.59 3.71
796 804 2.567169 CACACCAATCTACCACCTCAGA 59.433 50.000 0.00 0.00 0.00 3.27
839 853 2.531685 CCACCCCTCCCAACTCCA 60.532 66.667 0.00 0.00 0.00 3.86
845 859 1.541368 CTCCTTTCCACCCCTCCCA 60.541 63.158 0.00 0.00 0.00 4.37
846 860 2.309504 CCTCCTTTCCACCCCTCCC 61.310 68.421 0.00 0.00 0.00 4.30
907 922 1.379527 CCAAATTAGACGCCCACTCC 58.620 55.000 0.00 0.00 0.00 3.85
917 932 2.695970 CCCCCGCCCCCAAATTAGA 61.696 63.158 0.00 0.00 0.00 2.10
1539 1637 1.298014 GGTGAGGAACTGGAGCAGG 59.702 63.158 0.00 0.00 41.55 4.85
1767 2695 2.200337 GGGGATTAATGGTGCGGCC 61.200 63.158 0.00 0.00 37.90 6.13
1811 2744 1.497278 CTGCACGACGAACAATGGG 59.503 57.895 0.00 0.00 0.00 4.00
1887 3257 1.602377 GTCGTCCAAAACCTGAACCAG 59.398 52.381 0.00 0.00 0.00 4.00
2235 3636 3.377172 CCCCAATTCATCGTTGTCCTAAC 59.623 47.826 0.00 0.00 0.00 2.34
2237 3638 2.682563 GCCCCAATTCATCGTTGTCCTA 60.683 50.000 0.00 0.00 0.00 2.94
2296 3697 2.556622 CTGCAACCGGGTCAATAAGTTT 59.443 45.455 6.32 0.00 0.00 2.66
2564 3967 1.135915 TGGTGCGCACAACTTTCAAAT 59.864 42.857 38.60 0.00 33.30 2.32
2579 3991 3.581024 TCAGCTCAATTGAAATGGTGC 57.419 42.857 16.41 12.08 0.00 5.01
2604 4016 3.496884 GGCACTGTCGACATTAAGACAAA 59.503 43.478 20.40 0.00 45.36 2.83
2617 4031 1.154413 GTTCGCATTGGCACTGTCG 60.154 57.895 6.71 10.26 41.24 4.35
2829 4253 3.913089 AGTTTCCGCCAGCAATTTTAAG 58.087 40.909 0.00 0.00 0.00 1.85
2947 4381 3.544684 AGGCAAATGATGACGAAGCATA 58.455 40.909 0.00 0.00 44.22 3.14
2954 4388 1.741706 AGCTGAAGGCAAATGATGACG 59.258 47.619 0.00 0.00 44.22 4.35
2974 4408 2.570135 TGTATTGCAGTGTGCTGAACA 58.430 42.857 0.00 0.00 45.31 3.18
2975 4409 3.003689 ACTTGTATTGCAGTGTGCTGAAC 59.996 43.478 0.00 0.00 45.31 3.18
2998 4499 5.086104 TGACATTAAGTTACAGAGGGAGC 57.914 43.478 0.00 0.00 0.00 4.70
3019 4520 3.624326 TTTGAACCGCAAAGATGTCTG 57.376 42.857 0.00 0.00 41.37 3.51
3026 4527 6.456181 TTTGCAGTTTAATTTGAACCGCAAAG 60.456 34.615 24.75 4.26 46.77 2.77
3032 4533 6.767080 ACGTTTTTGCAGTTTAATTTGAACC 58.233 32.000 0.82 0.00 0.00 3.62
3094 4598 7.539712 TTCTGCATTCTAATAGCAAGTACAC 57.460 36.000 0.00 0.00 37.89 2.90
3095 4599 8.737168 ATTTCTGCATTCTAATAGCAAGTACA 57.263 30.769 0.00 0.00 37.89 2.90
3150 4670 9.853555 CCTGCATTCTTACACAAATTATAACAA 57.146 29.630 0.00 0.00 0.00 2.83
3273 4816 6.799925 ACCGAAATCTGCAGTAAAATAAAACG 59.200 34.615 14.67 7.09 0.00 3.60
3356 5632 4.020543 AGAAGAGCGTGAAGGAGTAGAAT 58.979 43.478 0.00 0.00 0.00 2.40
3492 5768 2.484947 GGTACGGGATGATGAAAGGGAC 60.485 54.545 0.00 0.00 0.00 4.46
3728 6004 2.498726 CTCGCCTGCTCCTCCTTC 59.501 66.667 0.00 0.00 0.00 3.46
3741 6017 3.724914 CTTCCTTCCTCGGGCTCGC 62.725 68.421 0.00 0.00 36.13 5.03
3751 6027 1.630878 TCTGCTTCTTCCCTTCCTTCC 59.369 52.381 0.00 0.00 0.00 3.46
3854 6133 5.657302 CAGGAAGTAGAAGTGTATACCCTGT 59.343 44.000 0.00 0.00 31.42 4.00
3962 6247 9.516546 TCGCTTTTTATAGGAGTAGATAGATCA 57.483 33.333 0.00 0.00 0.00 2.92
3963 6248 9.997482 CTCGCTTTTTATAGGAGTAGATAGATC 57.003 37.037 0.00 0.00 0.00 2.75
3964 6249 9.523168 ACTCGCTTTTTATAGGAGTAGATAGAT 57.477 33.333 0.00 0.00 36.28 1.98
3965 6250 8.921353 ACTCGCTTTTTATAGGAGTAGATAGA 57.079 34.615 0.00 0.00 36.28 1.98
3966 6251 9.400638 CAACTCGCTTTTTATAGGAGTAGATAG 57.599 37.037 0.00 0.00 36.99 2.08
4102 6388 3.243068 GCATGTGTTTCGGACAACTTCTT 60.243 43.478 0.00 0.00 40.65 2.52
4124 6410 0.525668 AAGATTACTCGTCAGCGCCG 60.526 55.000 2.29 0.00 38.14 6.46
4294 6580 3.244387 GCCAGATCTAGATGGGGAGAAAC 60.244 52.174 18.99 0.00 37.05 2.78
4864 8986 5.400066 TGACGAACACTCCATCTATCAAA 57.600 39.130 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.