Multiple sequence alignment - TraesCS5A01G405600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G405600 chr5A 100.000 2984 0 0 1 2984 597281070 597278087 0.000000e+00 5511
1 TraesCS5A01G405600 chr5A 91.390 1115 78 10 756 1864 597265858 597264756 0.000000e+00 1511
2 TraesCS5A01G405600 chr5A 84.853 680 88 14 2308 2980 597264498 597263827 0.000000e+00 671
3 TraesCS5A01G405600 chr5A 83.478 345 40 13 9 348 657100981 657100649 3.740000e-79 305
4 TraesCS5A01G405600 chr5A 85.199 277 32 5 14 282 423914838 423915113 2.930000e-70 276
5 TraesCS5A01G405600 chr5A 92.727 110 7 1 490 598 597266052 597265943 1.110000e-34 158
6 TraesCS5A01G405600 chr5D 88.380 2487 217 35 519 2975 478001507 477999063 0.000000e+00 2926
7 TraesCS5A01G405600 chr5D 81.917 459 61 14 9 447 106685448 106685904 4.700000e-98 368
8 TraesCS5A01G405600 chr5D 78.586 481 72 19 7 461 472371880 472371405 3.760000e-74 289
9 TraesCS5A01G405600 chr5B 91.942 1514 102 14 639 2141 585496280 585494776 0.000000e+00 2102
10 TraesCS5A01G405600 chr5B 82.288 813 106 20 2201 2981 585494756 585493950 0.000000e+00 669
11 TraesCS5A01G405600 chr5B 86.207 290 32 3 11 293 69544199 69544487 1.040000e-79 307
12 TraesCS5A01G405600 chr5B 87.273 165 11 3 490 645 585505456 585505293 2.360000e-41 180
13 TraesCS5A01G405600 chr1D 85.700 993 127 8 992 1978 342170241 342171224 0.000000e+00 1033
14 TraesCS5A01G405600 chr1D 81.944 504 75 13 9 498 341181094 341180593 2.140000e-111 412
15 TraesCS5A01G405600 chr1D 80.275 436 57 16 10 427 26149219 26149643 4.830000e-78 302
16 TraesCS5A01G405600 chr1A 85.297 993 131 8 992 1978 441841980 441842963 0.000000e+00 1011
17 TraesCS5A01G405600 chr1B 84.785 999 131 10 992 1978 458263003 458263992 0.000000e+00 983
18 TraesCS5A01G405600 chr1B 84.631 1002 136 8 992 1978 458081466 458082464 0.000000e+00 981
19 TraesCS5A01G405600 chr1B 84.585 999 133 10 992 1978 458129635 458130624 0.000000e+00 972
20 TraesCS5A01G405600 chr1B 80.280 999 157 17 992 1978 458172368 458173338 0.000000e+00 717
21 TraesCS5A01G405600 chr2B 79.614 932 165 16 1044 1961 796341291 796342211 0.000000e+00 645
22 TraesCS5A01G405600 chr3D 77.397 876 171 19 1102 1959 362855570 362856436 2.070000e-136 496
23 TraesCS5A01G405600 chr3D 83.556 450 49 16 12 454 11794181 11794612 5.990000e-107 398
24 TraesCS5A01G405600 chr2A 80.625 640 119 3 1323 1961 761541925 761541290 9.610000e-135 490
25 TraesCS5A01G405600 chrUn 76.932 854 165 23 1121 1961 22888452 22889286 9.750000e-125 457
26 TraesCS5A01G405600 chr7B 79.883 512 75 19 10 498 581372561 581373067 1.700000e-92 350
27 TraesCS5A01G405600 chr4D 88.302 265 29 2 12 275 67221788 67221525 1.730000e-82 316
28 TraesCS5A01G405600 chr6B 79.958 474 55 19 9 456 709258520 709258979 2.230000e-81 313
29 TraesCS5A01G405600 chr6B 82.123 358 43 7 122 459 306760459 306760815 1.350000e-73 287
30 TraesCS5A01G405600 chr6B 78.243 478 67 19 10 453 633552742 633552268 3.790000e-69 272
31 TraesCS5A01G405600 chr2D 81.572 369 44 14 113 458 600412740 600413107 1.750000e-72 283
32 TraesCS5A01G405600 chr2D 78.431 459 80 14 11 456 644100550 644100098 6.300000e-72 281
33 TraesCS5A01G405600 chr2D 88.608 158 17 1 302 458 603393814 603393657 1.090000e-44 191
34 TraesCS5A01G405600 chr3A 89.873 158 14 2 302 458 614470454 614470610 5.040000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G405600 chr5A 597278087 597281070 2983 True 5511.0 5511 100.000000 1 2984 1 chr5A.!!$R1 2983
1 TraesCS5A01G405600 chr5A 597263827 597266052 2225 True 780.0 1511 89.656667 490 2980 3 chr5A.!!$R3 2490
2 TraesCS5A01G405600 chr5D 477999063 478001507 2444 True 2926.0 2926 88.380000 519 2975 1 chr5D.!!$R2 2456
3 TraesCS5A01G405600 chr5B 585493950 585496280 2330 True 1385.5 2102 87.115000 639 2981 2 chr5B.!!$R2 2342
4 TraesCS5A01G405600 chr1D 342170241 342171224 983 False 1033.0 1033 85.700000 992 1978 1 chr1D.!!$F2 986
5 TraesCS5A01G405600 chr1D 341180593 341181094 501 True 412.0 412 81.944000 9 498 1 chr1D.!!$R1 489
6 TraesCS5A01G405600 chr1A 441841980 441842963 983 False 1011.0 1011 85.297000 992 1978 1 chr1A.!!$F1 986
7 TraesCS5A01G405600 chr1B 458263003 458263992 989 False 983.0 983 84.785000 992 1978 1 chr1B.!!$F4 986
8 TraesCS5A01G405600 chr1B 458081466 458082464 998 False 981.0 981 84.631000 992 1978 1 chr1B.!!$F1 986
9 TraesCS5A01G405600 chr1B 458129635 458130624 989 False 972.0 972 84.585000 992 1978 1 chr1B.!!$F2 986
10 TraesCS5A01G405600 chr1B 458172368 458173338 970 False 717.0 717 80.280000 992 1978 1 chr1B.!!$F3 986
11 TraesCS5A01G405600 chr2B 796341291 796342211 920 False 645.0 645 79.614000 1044 1961 1 chr2B.!!$F1 917
12 TraesCS5A01G405600 chr3D 362855570 362856436 866 False 496.0 496 77.397000 1102 1959 1 chr3D.!!$F2 857
13 TraesCS5A01G405600 chr2A 761541290 761541925 635 True 490.0 490 80.625000 1323 1961 1 chr2A.!!$R1 638
14 TraesCS5A01G405600 chrUn 22888452 22889286 834 False 457.0 457 76.932000 1121 1961 1 chrUn.!!$F1 840
15 TraesCS5A01G405600 chr7B 581372561 581373067 506 False 350.0 350 79.883000 10 498 1 chr7B.!!$F1 488

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
443 450 0.036388 TTTGAGGAGTGCCCGATCAC 60.036 55.0 0.0 0.0 40.87 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2411 2699 0.165295 TGAACTACTCGCGAGTCACG 59.835 55.0 42.28 31.2 42.54 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.203082 CGATGGAGGAGGCGGATCA 61.203 63.158 0.00 0.00 0.00 2.92
78 79 1.318158 GGAGCAGGGCTTCAACATGG 61.318 60.000 0.00 0.00 39.88 3.66
142 149 1.022735 CAGCATGCCATCCTGAAGTC 58.977 55.000 15.66 0.00 0.00 3.01
148 155 0.548031 GCCATCCTGAAGTCCATCCA 59.452 55.000 0.00 0.00 0.00 3.41
158 165 3.992406 TCCATCCAGGATGAGGCC 58.008 61.111 28.79 0.00 43.07 5.19
161 168 0.689623 CCATCCAGGATGAGGCCTAC 59.310 60.000 28.79 0.00 42.09 3.18
165 172 1.043116 CCAGGATGAGGCCTACGTGA 61.043 60.000 20.67 0.60 39.69 4.35
167 174 1.115467 AGGATGAGGCCTACGTGAAG 58.885 55.000 4.42 0.00 36.22 3.02
174 181 3.870606 CCTACGTGAAGGCCAACG 58.129 61.111 20.12 20.12 0.00 4.10
175 182 1.290955 CCTACGTGAAGGCCAACGA 59.709 57.895 26.22 12.63 0.00 3.85
176 183 0.736325 CCTACGTGAAGGCCAACGAG 60.736 60.000 26.22 18.84 0.00 4.18
177 184 0.038526 CTACGTGAAGGCCAACGAGT 60.039 55.000 26.22 13.88 0.00 4.18
178 185 1.200716 CTACGTGAAGGCCAACGAGTA 59.799 52.381 26.22 14.23 0.00 2.59
179 186 0.038526 ACGTGAAGGCCAACGAGTAG 60.039 55.000 26.22 4.60 0.00 2.57
180 187 0.038526 CGTGAAGGCCAACGAGTAGT 60.039 55.000 17.76 0.00 0.00 2.73
181 188 1.604693 CGTGAAGGCCAACGAGTAGTT 60.605 52.381 17.76 0.00 45.45 2.24
182 189 2.067013 GTGAAGGCCAACGAGTAGTTC 58.933 52.381 5.01 0.00 42.02 3.01
183 190 1.001633 TGAAGGCCAACGAGTAGTTCC 59.998 52.381 5.01 0.00 42.02 3.62
184 191 1.275573 GAAGGCCAACGAGTAGTTCCT 59.724 52.381 5.01 0.00 42.02 3.36
185 192 1.349067 AGGCCAACGAGTAGTTCCTT 58.651 50.000 5.01 0.00 42.02 3.36
186 193 1.275573 AGGCCAACGAGTAGTTCCTTC 59.724 52.381 5.01 0.00 42.02 3.46
187 194 1.001633 GGCCAACGAGTAGTTCCTTCA 59.998 52.381 0.00 0.00 42.02 3.02
188 195 2.338500 GCCAACGAGTAGTTCCTTCAG 58.662 52.381 0.00 0.00 42.02 3.02
189 196 2.338500 CCAACGAGTAGTTCCTTCAGC 58.662 52.381 0.00 0.00 42.02 4.26
190 197 2.288825 CCAACGAGTAGTTCCTTCAGCA 60.289 50.000 0.00 0.00 42.02 4.41
191 198 2.989840 CAACGAGTAGTTCCTTCAGCAG 59.010 50.000 0.00 0.00 42.02 4.24
192 199 1.546476 ACGAGTAGTTCCTTCAGCAGG 59.454 52.381 0.00 0.00 45.64 4.85
200 207 2.818714 CTTCAGCAGGAGCAGGCG 60.819 66.667 0.00 0.00 45.49 5.52
201 208 4.399395 TTCAGCAGGAGCAGGCGG 62.399 66.667 0.00 0.00 45.49 6.13
219 226 3.827784 CGTCCGACGCGCTCTTTG 61.828 66.667 5.73 0.00 33.65 2.77
220 227 4.135493 GTCCGACGCGCTCTTTGC 62.135 66.667 5.73 0.00 38.57 3.68
224 231 3.411351 GACGCGCTCTTTGCCGAA 61.411 61.111 5.73 0.00 38.24 4.30
225 232 3.631049 GACGCGCTCTTTGCCGAAC 62.631 63.158 5.73 0.00 38.24 3.95
226 233 3.414700 CGCGCTCTTTGCCGAACT 61.415 61.111 5.56 0.00 37.47 3.01
227 234 2.476499 GCGCTCTTTGCCGAACTC 59.524 61.111 0.00 0.00 38.78 3.01
228 235 2.772189 CGCTCTTTGCCGAACTCG 59.228 61.111 0.00 0.00 38.78 4.18
229 236 1.733041 CGCTCTTTGCCGAACTCGA 60.733 57.895 0.00 0.00 39.69 4.04
230 237 1.678269 CGCTCTTTGCCGAACTCGAG 61.678 60.000 11.84 11.84 39.69 4.04
231 238 0.388649 GCTCTTTGCCGAACTCGAGA 60.389 55.000 21.68 0.00 43.02 4.04
232 239 1.341606 CTCTTTGCCGAACTCGAGAC 58.658 55.000 21.68 11.61 43.02 3.36
233 240 0.671796 TCTTTGCCGAACTCGAGACA 59.328 50.000 21.68 6.11 43.02 3.41
234 241 1.063806 CTTTGCCGAACTCGAGACAG 58.936 55.000 21.68 9.03 43.02 3.51
235 242 0.671796 TTTGCCGAACTCGAGACAGA 59.328 50.000 21.68 1.65 43.02 3.41
236 243 0.241213 TTGCCGAACTCGAGACAGAG 59.759 55.000 21.68 4.68 43.02 3.35
237 244 0.605589 TGCCGAACTCGAGACAGAGA 60.606 55.000 21.68 0.00 43.02 3.10
238 245 0.736053 GCCGAACTCGAGACAGAGAT 59.264 55.000 21.68 0.00 43.02 2.75
239 246 1.941294 GCCGAACTCGAGACAGAGATA 59.059 52.381 21.68 0.00 43.02 1.98
240 247 2.032377 GCCGAACTCGAGACAGAGATAG 60.032 54.545 21.68 0.00 43.02 2.08
241 248 3.459145 CCGAACTCGAGACAGAGATAGA 58.541 50.000 21.68 0.00 43.02 1.98
242 249 3.493129 CCGAACTCGAGACAGAGATAGAG 59.507 52.174 21.68 0.00 43.02 2.43
243 250 3.493129 CGAACTCGAGACAGAGATAGAGG 59.507 52.174 21.68 0.00 43.02 3.69
244 251 4.699637 GAACTCGAGACAGAGATAGAGGA 58.300 47.826 21.68 0.00 40.57 3.71
245 252 4.336889 ACTCGAGACAGAGATAGAGGAG 57.663 50.000 21.68 0.00 40.57 3.69
246 253 3.071023 ACTCGAGACAGAGATAGAGGAGG 59.929 52.174 21.68 0.00 40.57 4.30
247 254 3.310193 TCGAGACAGAGATAGAGGAGGA 58.690 50.000 0.00 0.00 0.00 3.71
248 255 3.907474 TCGAGACAGAGATAGAGGAGGAT 59.093 47.826 0.00 0.00 0.00 3.24
249 256 4.002982 CGAGACAGAGATAGAGGAGGATG 58.997 52.174 0.00 0.00 0.00 3.51
250 257 4.262851 CGAGACAGAGATAGAGGAGGATGA 60.263 50.000 0.00 0.00 0.00 2.92
251 258 5.246981 AGACAGAGATAGAGGAGGATGAG 57.753 47.826 0.00 0.00 0.00 2.90
252 259 4.043310 AGACAGAGATAGAGGAGGATGAGG 59.957 50.000 0.00 0.00 0.00 3.86
253 260 3.091545 CAGAGATAGAGGAGGATGAGGC 58.908 54.545 0.00 0.00 0.00 4.70
254 261 2.042979 AGAGATAGAGGAGGATGAGGCC 59.957 54.545 0.00 0.00 0.00 5.19
255 262 1.792026 AGATAGAGGAGGATGAGGCCA 59.208 52.381 5.01 0.00 0.00 5.36
256 263 2.178580 GATAGAGGAGGATGAGGCCAG 58.821 57.143 5.01 0.00 0.00 4.85
257 264 1.235756 TAGAGGAGGATGAGGCCAGA 58.764 55.000 5.01 0.00 0.00 3.86
258 265 0.105555 AGAGGAGGATGAGGCCAGAG 60.106 60.000 5.01 0.00 0.00 3.35
259 266 1.757423 GAGGAGGATGAGGCCAGAGC 61.757 65.000 5.01 0.00 38.76 4.09
260 267 2.420890 GAGGATGAGGCCAGAGCG 59.579 66.667 5.01 0.00 41.24 5.03
261 268 3.160047 AGGATGAGGCCAGAGCGG 61.160 66.667 5.01 0.00 41.24 5.52
262 269 3.157252 GGATGAGGCCAGAGCGGA 61.157 66.667 5.01 0.00 41.24 5.54
263 270 2.420890 GATGAGGCCAGAGCGGAG 59.579 66.667 5.01 0.00 41.24 4.63
285 292 2.815647 CAAAGGCGTCGGAGGCTC 60.816 66.667 20.53 5.78 46.87 4.70
286 293 4.436998 AAAGGCGTCGGAGGCTCG 62.437 66.667 20.53 4.22 46.87 5.03
300 307 2.659016 CTCGGGAGCTGCAACTGA 59.341 61.111 7.79 3.66 0.00 3.41
301 308 1.004560 CTCGGGAGCTGCAACTGAA 60.005 57.895 7.79 0.00 0.00 3.02
302 309 1.004560 TCGGGAGCTGCAACTGAAG 60.005 57.895 7.79 0.00 0.00 3.02
303 310 1.004560 CGGGAGCTGCAACTGAAGA 60.005 57.895 7.79 0.00 0.00 2.87
304 311 0.392193 CGGGAGCTGCAACTGAAGAT 60.392 55.000 7.79 0.00 0.00 2.40
305 312 1.831580 GGGAGCTGCAACTGAAGATT 58.168 50.000 7.79 0.00 0.00 2.40
306 313 1.471684 GGGAGCTGCAACTGAAGATTG 59.528 52.381 7.79 0.00 0.00 2.67
307 314 2.157738 GGAGCTGCAACTGAAGATTGT 58.842 47.619 0.00 0.00 0.00 2.71
308 315 2.161211 GGAGCTGCAACTGAAGATTGTC 59.839 50.000 0.00 0.00 0.00 3.18
309 316 1.802960 AGCTGCAACTGAAGATTGTCG 59.197 47.619 1.02 0.00 0.00 4.35
310 317 1.800586 GCTGCAACTGAAGATTGTCGA 59.199 47.619 0.00 0.00 0.00 4.20
311 318 2.412065 GCTGCAACTGAAGATTGTCGAC 60.412 50.000 9.11 9.11 0.00 4.20
312 319 2.802247 CTGCAACTGAAGATTGTCGACA 59.198 45.455 15.76 15.76 0.00 4.35
313 320 3.402110 TGCAACTGAAGATTGTCGACAT 58.598 40.909 20.80 9.63 0.00 3.06
314 321 3.433274 TGCAACTGAAGATTGTCGACATC 59.567 43.478 20.80 17.67 0.00 3.06
315 322 3.681897 GCAACTGAAGATTGTCGACATCT 59.318 43.478 20.80 19.51 0.00 2.90
316 323 4.201666 GCAACTGAAGATTGTCGACATCTC 60.202 45.833 20.80 18.34 0.00 2.75
317 324 4.116747 ACTGAAGATTGTCGACATCTCC 57.883 45.455 20.80 12.43 0.00 3.71
318 325 3.111838 CTGAAGATTGTCGACATCTCCG 58.888 50.000 20.80 11.28 0.00 4.63
319 326 2.752903 TGAAGATTGTCGACATCTCCGA 59.247 45.455 20.80 3.01 0.00 4.55
323 330 4.978773 GTCGACATCTCCGACGAG 57.021 61.111 11.55 0.00 45.23 4.18
324 331 1.352404 GTCGACATCTCCGACGAGG 59.648 63.158 11.55 0.00 45.23 4.63
333 340 3.682766 TCCGACGAGGAGTAGCTAG 57.317 57.895 0.00 0.00 45.98 3.42
334 341 1.117994 TCCGACGAGGAGTAGCTAGA 58.882 55.000 0.00 0.00 45.98 2.43
335 342 1.693062 TCCGACGAGGAGTAGCTAGAT 59.307 52.381 0.00 0.00 45.98 1.98
336 343 2.070783 CCGACGAGGAGTAGCTAGATC 58.929 57.143 0.00 0.00 45.00 2.75
337 344 2.289195 CCGACGAGGAGTAGCTAGATCT 60.289 54.545 0.00 0.00 45.00 2.75
338 345 2.991190 CGACGAGGAGTAGCTAGATCTC 59.009 54.545 0.00 0.00 0.00 2.75
339 346 3.305813 CGACGAGGAGTAGCTAGATCTCT 60.306 52.174 0.00 0.00 0.00 3.10
340 347 4.082625 CGACGAGGAGTAGCTAGATCTCTA 60.083 50.000 0.00 0.00 0.00 2.43
341 348 5.393787 CGACGAGGAGTAGCTAGATCTCTAT 60.394 48.000 0.00 0.63 0.00 1.98
342 349 5.730550 ACGAGGAGTAGCTAGATCTCTATG 58.269 45.833 0.00 3.38 0.00 2.23
343 350 5.247564 ACGAGGAGTAGCTAGATCTCTATGT 59.752 44.000 0.00 3.85 0.00 2.29
344 351 6.438108 ACGAGGAGTAGCTAGATCTCTATGTA 59.562 42.308 0.00 0.00 0.00 2.29
345 352 6.978659 CGAGGAGTAGCTAGATCTCTATGTAG 59.021 46.154 0.00 0.00 33.18 2.74
346 353 7.363530 CGAGGAGTAGCTAGATCTCTATGTAGT 60.364 44.444 0.00 0.00 32.73 2.73
347 354 8.904648 AGGAGTAGCTAGATCTCTATGTAGTA 57.095 38.462 0.00 0.00 32.73 1.82
348 355 9.502035 AGGAGTAGCTAGATCTCTATGTAGTAT 57.498 37.037 0.00 0.00 32.73 2.12
349 356 9.542462 GGAGTAGCTAGATCTCTATGTAGTATG 57.458 40.741 0.00 0.00 32.73 2.39
350 357 8.958119 AGTAGCTAGATCTCTATGTAGTATGC 57.042 38.462 0.00 0.00 32.73 3.14
351 358 8.544622 AGTAGCTAGATCTCTATGTAGTATGCA 58.455 37.037 0.00 0.00 32.73 3.96
352 359 7.864108 AGCTAGATCTCTATGTAGTATGCAG 57.136 40.000 0.00 0.00 31.11 4.41
353 360 6.828273 AGCTAGATCTCTATGTAGTATGCAGG 59.172 42.308 0.00 0.00 31.11 4.85
354 361 6.601613 GCTAGATCTCTATGTAGTATGCAGGT 59.398 42.308 0.00 0.00 31.11 4.00
355 362 7.122055 GCTAGATCTCTATGTAGTATGCAGGTT 59.878 40.741 0.00 0.00 31.11 3.50
356 363 7.847711 AGATCTCTATGTAGTATGCAGGTTT 57.152 36.000 0.00 0.00 31.11 3.27
357 364 8.256356 AGATCTCTATGTAGTATGCAGGTTTT 57.744 34.615 0.00 0.00 31.11 2.43
358 365 8.709308 AGATCTCTATGTAGTATGCAGGTTTTT 58.291 33.333 0.00 0.00 31.11 1.94
359 366 9.982651 GATCTCTATGTAGTATGCAGGTTTTTA 57.017 33.333 0.00 0.00 31.11 1.52
361 368 9.817809 TCTCTATGTAGTATGCAGGTTTTTAAG 57.182 33.333 0.00 0.00 31.11 1.85
362 369 9.601217 CTCTATGTAGTATGCAGGTTTTTAAGT 57.399 33.333 0.00 0.00 31.11 2.24
363 370 9.953565 TCTATGTAGTATGCAGGTTTTTAAGTT 57.046 29.630 0.00 0.00 31.11 2.66
366 373 7.142680 TGTAGTATGCAGGTTTTTAAGTTTGC 58.857 34.615 0.00 0.00 0.00 3.68
367 374 6.155475 AGTATGCAGGTTTTTAAGTTTGCA 57.845 33.333 0.00 0.00 44.49 4.08
369 376 5.927954 ATGCAGGTTTTTAAGTTTGCATG 57.072 34.783 8.75 0.00 46.83 4.06
370 377 3.559242 TGCAGGTTTTTAAGTTTGCATGC 59.441 39.130 11.82 11.82 36.71 4.06
371 378 3.809279 GCAGGTTTTTAAGTTTGCATGCT 59.191 39.130 20.33 0.00 32.05 3.79
372 379 4.273235 GCAGGTTTTTAAGTTTGCATGCTT 59.727 37.500 20.33 7.21 32.05 3.91
373 380 5.220835 GCAGGTTTTTAAGTTTGCATGCTTT 60.221 36.000 20.33 10.41 32.05 3.51
374 381 6.677675 GCAGGTTTTTAAGTTTGCATGCTTTT 60.678 34.615 20.33 10.06 32.05 2.27
375 382 6.687958 CAGGTTTTTAAGTTTGCATGCTTTTG 59.312 34.615 20.33 0.00 0.00 2.44
376 383 6.374053 AGGTTTTTAAGTTTGCATGCTTTTGT 59.626 30.769 20.33 4.16 0.00 2.83
377 384 7.550906 AGGTTTTTAAGTTTGCATGCTTTTGTA 59.449 29.630 20.33 3.14 0.00 2.41
378 385 8.341903 GGTTTTTAAGTTTGCATGCTTTTGTAT 58.658 29.630 20.33 1.93 0.00 2.29
379 386 9.157259 GTTTTTAAGTTTGCATGCTTTTGTATG 57.843 29.630 20.33 0.00 43.91 2.39
380 387 7.418840 TTTAAGTTTGCATGCTTTTGTATGG 57.581 32.000 20.33 0.00 41.83 2.74
381 388 4.870123 AGTTTGCATGCTTTTGTATGGA 57.130 36.364 20.33 0.00 41.83 3.41
382 389 5.410355 AGTTTGCATGCTTTTGTATGGAT 57.590 34.783 20.33 0.00 41.66 3.41
383 390 5.797051 AGTTTGCATGCTTTTGTATGGATT 58.203 33.333 20.33 0.00 41.66 3.01
384 391 6.232692 AGTTTGCATGCTTTTGTATGGATTT 58.767 32.000 20.33 0.00 41.66 2.17
385 392 6.148150 AGTTTGCATGCTTTTGTATGGATTTG 59.852 34.615 20.33 0.00 41.66 2.32
386 393 5.402997 TGCATGCTTTTGTATGGATTTGA 57.597 34.783 20.33 0.00 41.83 2.69
387 394 5.170021 TGCATGCTTTTGTATGGATTTGAC 58.830 37.500 20.33 0.00 41.83 3.18
388 395 5.170021 GCATGCTTTTGTATGGATTTGACA 58.830 37.500 11.37 0.00 41.83 3.58
389 396 5.638657 GCATGCTTTTGTATGGATTTGACAA 59.361 36.000 11.37 0.00 41.83 3.18
390 397 6.314400 GCATGCTTTTGTATGGATTTGACAAT 59.686 34.615 11.37 0.00 41.83 2.71
391 398 7.464977 GCATGCTTTTGTATGGATTTGACAATC 60.465 37.037 11.37 0.00 41.83 2.67
392 399 7.230849 TGCTTTTGTATGGATTTGACAATCT 57.769 32.000 0.00 0.00 39.17 2.40
393 400 8.347004 TGCTTTTGTATGGATTTGACAATCTA 57.653 30.769 0.00 0.00 39.17 1.98
394 401 8.461222 TGCTTTTGTATGGATTTGACAATCTAG 58.539 33.333 0.00 0.00 39.17 2.43
395 402 8.462016 GCTTTTGTATGGATTTGACAATCTAGT 58.538 33.333 0.00 0.00 39.17 2.57
400 407 9.987272 TGTATGGATTTGACAATCTAGTATGAG 57.013 33.333 4.85 0.00 39.17 2.90
403 410 9.722184 ATGGATTTGACAATCTAGTATGAGATG 57.278 33.333 4.85 0.00 39.17 2.90
404 411 8.708378 TGGATTTGACAATCTAGTATGAGATGT 58.292 33.333 4.85 0.00 39.17 3.06
405 412 9.202273 GGATTTGACAATCTAGTATGAGATGTC 57.798 37.037 4.85 0.00 39.17 3.06
406 413 9.202273 GATTTGACAATCTAGTATGAGATGTCC 57.798 37.037 0.00 0.00 36.28 4.02
407 414 6.319141 TGACAATCTAGTATGAGATGTCCG 57.681 41.667 0.00 0.00 36.28 4.79
408 415 5.241728 TGACAATCTAGTATGAGATGTCCGG 59.758 44.000 0.00 0.00 36.28 5.14
409 416 5.386060 ACAATCTAGTATGAGATGTCCGGA 58.614 41.667 0.00 0.00 36.28 5.14
410 417 6.013379 ACAATCTAGTATGAGATGTCCGGAT 58.987 40.000 7.81 0.00 36.28 4.18
411 418 6.071672 ACAATCTAGTATGAGATGTCCGGATG 60.072 42.308 7.81 0.00 36.28 3.51
412 419 4.986783 TCTAGTATGAGATGTCCGGATGT 58.013 43.478 7.81 0.00 0.00 3.06
413 420 6.123045 TCTAGTATGAGATGTCCGGATGTA 57.877 41.667 7.81 0.00 0.00 2.29
414 421 6.174049 TCTAGTATGAGATGTCCGGATGTAG 58.826 44.000 7.81 0.00 0.00 2.74
415 422 4.730966 AGTATGAGATGTCCGGATGTAGT 58.269 43.478 7.81 0.00 0.00 2.73
416 423 5.141182 AGTATGAGATGTCCGGATGTAGTT 58.859 41.667 7.81 0.00 0.00 2.24
417 424 3.801114 TGAGATGTCCGGATGTAGTTG 57.199 47.619 7.81 0.00 0.00 3.16
418 425 3.096852 TGAGATGTCCGGATGTAGTTGT 58.903 45.455 7.81 0.00 0.00 3.32
419 426 3.119137 TGAGATGTCCGGATGTAGTTGTG 60.119 47.826 7.81 0.00 0.00 3.33
420 427 2.832129 AGATGTCCGGATGTAGTTGTGT 59.168 45.455 7.81 0.00 0.00 3.72
421 428 3.260884 AGATGTCCGGATGTAGTTGTGTT 59.739 43.478 7.81 0.00 0.00 3.32
422 429 2.761559 TGTCCGGATGTAGTTGTGTTG 58.238 47.619 7.81 0.00 0.00 3.33
423 430 2.365941 TGTCCGGATGTAGTTGTGTTGA 59.634 45.455 7.81 0.00 0.00 3.18
424 431 3.007506 TGTCCGGATGTAGTTGTGTTGAT 59.992 43.478 7.81 0.00 0.00 2.57
425 432 4.000988 GTCCGGATGTAGTTGTGTTGATT 58.999 43.478 7.81 0.00 0.00 2.57
426 433 4.454504 GTCCGGATGTAGTTGTGTTGATTT 59.545 41.667 7.81 0.00 0.00 2.17
427 434 4.454161 TCCGGATGTAGTTGTGTTGATTTG 59.546 41.667 0.00 0.00 0.00 2.32
428 435 4.454161 CCGGATGTAGTTGTGTTGATTTGA 59.546 41.667 0.00 0.00 0.00 2.69
429 436 5.390885 CCGGATGTAGTTGTGTTGATTTGAG 60.391 44.000 0.00 0.00 0.00 3.02
430 437 5.390885 CGGATGTAGTTGTGTTGATTTGAGG 60.391 44.000 0.00 0.00 0.00 3.86
431 438 5.705441 GGATGTAGTTGTGTTGATTTGAGGA 59.295 40.000 0.00 0.00 0.00 3.71
432 439 6.128172 GGATGTAGTTGTGTTGATTTGAGGAG 60.128 42.308 0.00 0.00 0.00 3.69
433 440 5.680619 TGTAGTTGTGTTGATTTGAGGAGT 58.319 37.500 0.00 0.00 0.00 3.85
434 441 5.527214 TGTAGTTGTGTTGATTTGAGGAGTG 59.473 40.000 0.00 0.00 0.00 3.51
435 442 3.316308 AGTTGTGTTGATTTGAGGAGTGC 59.684 43.478 0.00 0.00 0.00 4.40
436 443 2.229792 TGTGTTGATTTGAGGAGTGCC 58.770 47.619 0.00 0.00 0.00 5.01
437 444 1.541588 GTGTTGATTTGAGGAGTGCCC 59.458 52.381 0.00 0.00 33.31 5.36
438 445 0.804989 GTTGATTTGAGGAGTGCCCG 59.195 55.000 0.00 0.00 40.87 6.13
439 446 0.690192 TTGATTTGAGGAGTGCCCGA 59.310 50.000 0.00 0.00 40.87 5.14
440 447 0.911769 TGATTTGAGGAGTGCCCGAT 59.088 50.000 0.00 0.00 40.87 4.18
441 448 1.134401 TGATTTGAGGAGTGCCCGATC 60.134 52.381 0.00 0.00 40.87 3.69
442 449 0.911769 ATTTGAGGAGTGCCCGATCA 59.088 50.000 0.00 0.00 40.87 2.92
443 450 0.036388 TTTGAGGAGTGCCCGATCAC 60.036 55.000 0.00 0.00 40.87 3.06
445 452 1.142748 GAGGAGTGCCCGATCACTG 59.857 63.158 13.02 0.00 46.40 3.66
446 453 2.512515 GGAGTGCCCGATCACTGC 60.513 66.667 13.02 12.11 46.40 4.40
447 454 2.512515 GAGTGCCCGATCACTGCC 60.513 66.667 13.02 0.00 46.40 4.85
448 455 4.101448 AGTGCCCGATCACTGCCC 62.101 66.667 8.41 0.00 44.88 5.36
454 461 4.592192 CGATCACTGCCCGCGGAT 62.592 66.667 30.73 11.28 0.00 4.18
455 462 2.969238 GATCACTGCCCGCGGATG 60.969 66.667 30.73 18.87 0.00 3.51
466 473 4.760047 GCGGATGCGTGTGAGGGT 62.760 66.667 8.84 0.00 0.00 4.34
467 474 2.047274 CGGATGCGTGTGAGGGTT 60.047 61.111 0.00 0.00 0.00 4.11
468 475 1.216977 CGGATGCGTGTGAGGGTTA 59.783 57.895 0.00 0.00 0.00 2.85
469 476 0.806102 CGGATGCGTGTGAGGGTTAG 60.806 60.000 0.00 0.00 0.00 2.34
470 477 0.535335 GGATGCGTGTGAGGGTTAGA 59.465 55.000 0.00 0.00 0.00 2.10
471 478 1.139058 GGATGCGTGTGAGGGTTAGAT 59.861 52.381 0.00 0.00 0.00 1.98
472 479 2.420129 GGATGCGTGTGAGGGTTAGATT 60.420 50.000 0.00 0.00 0.00 2.40
473 480 2.851263 TGCGTGTGAGGGTTAGATTT 57.149 45.000 0.00 0.00 0.00 2.17
474 481 3.134574 TGCGTGTGAGGGTTAGATTTT 57.865 42.857 0.00 0.00 0.00 1.82
475 482 3.482436 TGCGTGTGAGGGTTAGATTTTT 58.518 40.909 0.00 0.00 0.00 1.94
476 483 3.500680 TGCGTGTGAGGGTTAGATTTTTC 59.499 43.478 0.00 0.00 0.00 2.29
477 484 3.119955 GCGTGTGAGGGTTAGATTTTTCC 60.120 47.826 0.00 0.00 0.00 3.13
478 485 4.324267 CGTGTGAGGGTTAGATTTTTCCT 58.676 43.478 0.00 0.00 0.00 3.36
479 486 5.484715 CGTGTGAGGGTTAGATTTTTCCTA 58.515 41.667 0.00 0.00 0.00 2.94
480 487 6.113411 CGTGTGAGGGTTAGATTTTTCCTAT 58.887 40.000 0.00 0.00 0.00 2.57
481 488 6.037172 CGTGTGAGGGTTAGATTTTTCCTATG 59.963 42.308 0.00 0.00 0.00 2.23
482 489 5.885912 TGTGAGGGTTAGATTTTTCCTATGC 59.114 40.000 0.00 0.00 0.00 3.14
483 490 5.007724 GTGAGGGTTAGATTTTTCCTATGCG 59.992 44.000 0.00 0.00 0.00 4.73
484 491 3.883489 AGGGTTAGATTTTTCCTATGCGC 59.117 43.478 0.00 0.00 0.00 6.09
485 492 3.004419 GGGTTAGATTTTTCCTATGCGCC 59.996 47.826 4.18 0.00 0.00 6.53
486 493 3.883489 GGTTAGATTTTTCCTATGCGCCT 59.117 43.478 4.18 0.00 0.00 5.52
487 494 4.261197 GGTTAGATTTTTCCTATGCGCCTG 60.261 45.833 4.18 0.00 0.00 4.85
488 495 3.004752 AGATTTTTCCTATGCGCCTGT 57.995 42.857 4.18 0.00 0.00 4.00
493 500 4.948341 TTTTCCTATGCGCCTGTAGATA 57.052 40.909 4.18 0.00 0.00 1.98
498 505 3.508012 CCTATGCGCCTGTAGATACTCTT 59.492 47.826 4.18 0.00 0.00 2.85
499 506 2.871182 TGCGCCTGTAGATACTCTTG 57.129 50.000 4.18 0.00 0.00 3.02
506 513 5.593010 GCCTGTAGATACTCTTGTACTTGG 58.407 45.833 0.00 0.00 0.00 3.61
507 514 5.360144 GCCTGTAGATACTCTTGTACTTGGA 59.640 44.000 0.00 0.00 0.00 3.53
508 515 6.041069 GCCTGTAGATACTCTTGTACTTGGAT 59.959 42.308 0.00 0.00 0.00 3.41
509 516 7.230913 GCCTGTAGATACTCTTGTACTTGGATA 59.769 40.741 0.00 0.00 0.00 2.59
510 517 8.569641 CCTGTAGATACTCTTGTACTTGGATAC 58.430 40.741 0.00 0.00 0.00 2.24
511 518 9.344772 CTGTAGATACTCTTGTACTTGGATACT 57.655 37.037 0.00 0.00 37.61 2.12
513 520 9.953697 GTAGATACTCTTGTACTTGGATACTTG 57.046 37.037 0.00 0.00 37.61 3.16
622 630 2.916702 TCTGATGCCGCAGATTATGT 57.083 45.000 0.00 0.00 39.84 2.29
634 642 4.381398 CGCAGATTATGTAGGCTAGCATCT 60.381 45.833 18.24 11.10 0.00 2.90
648 656 6.049149 GGCTAGCATCTTTGACATGTTAGTA 58.951 40.000 18.24 0.00 37.38 1.82
666 674 9.975218 ATGTTAGTACCTACAATGAAATTCCTT 57.025 29.630 2.21 0.00 31.22 3.36
723 731 2.024176 TAGCTTTCAGCAACCGGATC 57.976 50.000 9.46 0.00 45.56 3.36
725 733 1.425428 CTTTCAGCAACCGGATCGC 59.575 57.895 9.46 7.53 0.00 4.58
739 747 1.348036 GGATCGCAGCCCCTAATAAGT 59.652 52.381 0.00 0.00 0.00 2.24
782 790 1.526917 ACATGGCCGGCTGCTAATC 60.527 57.895 28.56 8.18 40.92 1.75
783 791 2.113986 ATGGCCGGCTGCTAATCC 59.886 61.111 28.56 7.32 40.92 3.01
784 792 2.455565 ATGGCCGGCTGCTAATCCT 61.456 57.895 28.56 0.00 40.92 3.24
785 793 2.281139 GGCCGGCTGCTAATCCTC 60.281 66.667 28.56 0.41 40.92 3.71
786 794 2.663188 GCCGGCTGCTAATCCTCG 60.663 66.667 22.15 0.00 36.87 4.63
787 795 2.815308 CCGGCTGCTAATCCTCGT 59.185 61.111 0.00 0.00 0.00 4.18
788 796 2.038690 CCGGCTGCTAATCCTCGTA 58.961 57.895 0.00 0.00 0.00 3.43
799 807 4.335874 GCTAATCCTCGTACTCTGACTTCA 59.664 45.833 0.00 0.00 0.00 3.02
836 848 3.362706 AGATGCGGTCTAGGACAAGTTA 58.637 45.455 0.14 0.00 34.69 2.24
861 873 1.519408 TCAAAAGAAGTACAGGCGCC 58.481 50.000 21.89 21.89 0.00 6.53
884 896 1.073199 GTTGCAGTGGCCAGTAGGT 59.927 57.895 14.17 0.00 40.13 3.08
928 945 3.462982 TCGACAAACCCCATCATAATCG 58.537 45.455 0.00 0.00 0.00 3.34
935 952 7.741785 ACAAACCCCATCATAATCGTAATCTA 58.258 34.615 0.00 0.00 0.00 1.98
1234 1282 4.400961 GCTGCGGCTCCACTCCTT 62.401 66.667 11.21 0.00 35.22 3.36
1777 2031 2.927856 TGATCACGGGCCAGTGGT 60.928 61.111 31.77 27.71 42.10 4.16
1830 2084 1.628238 TTCCCGGGTATGGCGTGATT 61.628 55.000 22.86 0.00 0.00 2.57
1961 2217 0.035458 AGCAACCTGGACTGCTACAC 59.965 55.000 21.10 0.00 46.92 2.90
1978 2234 4.170062 CGCAGCAGCCATTCACCG 62.170 66.667 0.00 0.00 37.52 4.94
1989 2245 1.611673 CCATTCACCGGCTGAGAAAGT 60.612 52.381 0.00 0.00 0.00 2.66
2031 2288 1.227527 TCACAAGTGGGCACTCGTG 60.228 57.895 2.29 2.29 45.20 4.35
2075 2332 4.009015 CCCAGCTGGCTTCCTTTC 57.991 61.111 28.39 0.00 0.00 2.62
2076 2333 1.075482 CCCAGCTGGCTTCCTTTCA 59.925 57.895 28.39 0.00 0.00 2.69
2084 2341 3.999046 CTGGCTTCCTTTCAGCAATTTT 58.001 40.909 0.00 0.00 39.21 1.82
2085 2342 3.992427 CTGGCTTCCTTTCAGCAATTTTC 59.008 43.478 0.00 0.00 39.21 2.29
2086 2343 3.642848 TGGCTTCCTTTCAGCAATTTTCT 59.357 39.130 0.00 0.00 39.21 2.52
2088 2345 5.059161 GGCTTCCTTTCAGCAATTTTCTTT 58.941 37.500 0.00 0.00 39.21 2.52
2136 2395 0.664224 TTTTCACGGAGGCGGAAAAC 59.336 50.000 0.00 0.00 36.06 2.43
2138 2397 0.464013 TTCACGGAGGCGGAAAACAA 60.464 50.000 0.00 0.00 0.00 2.83
2139 2398 0.464013 TCACGGAGGCGGAAAACAAA 60.464 50.000 0.00 0.00 0.00 2.83
2140 2399 0.382515 CACGGAGGCGGAAAACAAAA 59.617 50.000 0.00 0.00 0.00 2.44
2141 2400 1.104630 ACGGAGGCGGAAAACAAAAA 58.895 45.000 0.00 0.00 0.00 1.94
2231 2491 4.118093 TCATTATCGTCGTCACCAACAT 57.882 40.909 0.00 0.00 0.00 2.71
2259 2519 1.918262 TGTGGGGAGCATCTTCATCTT 59.082 47.619 0.00 0.00 33.73 2.40
2282 2542 3.130164 CACCATCTTCACAAACAACACCA 59.870 43.478 0.00 0.00 0.00 4.17
2294 2555 5.179368 ACAAACAACACCATCTACATCTTCG 59.821 40.000 0.00 0.00 0.00 3.79
2313 2601 1.886222 CGATGTCACCCCCATGTGTTT 60.886 52.381 0.00 0.00 37.51 2.83
2400 2688 7.501559 GCTATTCATATTCATATGCTCCCACAT 59.498 37.037 0.00 0.00 39.90 3.21
2411 2699 1.815003 GCTCCCACATATGCTTATGCC 59.185 52.381 17.16 0.00 39.09 4.40
2418 2706 3.185188 CACATATGCTTATGCCGTGACTC 59.815 47.826 17.16 0.00 39.09 3.36
2482 2784 4.887655 TGCTACAAATCCTAGACTCGATCA 59.112 41.667 0.00 0.00 0.00 2.92
2507 2809 5.359009 GGGAATGATTCATTGTCACTCATGT 59.641 40.000 16.41 0.00 33.90 3.21
2519 2821 2.760650 TCACTCATGTCTGCCTACGATT 59.239 45.455 0.00 0.00 0.00 3.34
2534 2836 1.674441 ACGATTCCGCTGTATTCGAGA 59.326 47.619 0.00 0.00 39.95 4.04
2538 2840 4.143514 CGATTCCGCTGTATTCGAGATTTC 60.144 45.833 0.00 0.00 0.00 2.17
2619 2922 5.753721 ATTCTATGCTCCCTAGGAATGTC 57.246 43.478 11.48 0.00 0.00 3.06
2620 2923 4.199002 TCTATGCTCCCTAGGAATGTCA 57.801 45.455 11.48 0.94 0.00 3.58
2638 2941 1.144708 TCAGTTCTTGGTGCATTGGGA 59.855 47.619 0.00 0.00 0.00 4.37
2639 2942 2.173519 CAGTTCTTGGTGCATTGGGAT 58.826 47.619 0.00 0.00 0.00 3.85
2672 2975 1.812507 GTGGGCCTACCTTTACGCG 60.813 63.158 8.31 3.53 41.11 6.01
2675 2978 2.724273 GGCCTACCTTTACGCGGGA 61.724 63.158 12.47 0.00 0.00 5.14
2676 2979 1.520120 GCCTACCTTTACGCGGGAC 60.520 63.158 12.47 0.00 0.00 4.46
2688 2991 0.729140 CGCGGGACTTTTGCATGTTC 60.729 55.000 0.00 0.00 0.00 3.18
2690 2993 1.269517 GCGGGACTTTTGCATGTTCAA 60.270 47.619 0.00 0.00 0.00 2.69
2694 2997 4.051237 GGGACTTTTGCATGTTCAAGTTC 58.949 43.478 0.00 0.00 29.43 3.01
2702 3005 2.867647 GCATGTTCAAGTTCTTTGGGCC 60.868 50.000 0.00 0.00 37.39 5.80
2722 3025 1.429463 GTTCGTCATGGTGTCTGGAC 58.571 55.000 0.00 0.00 0.00 4.02
2737 3040 1.526225 GGACCTCCTAATTGGCGCC 60.526 63.158 22.73 22.73 35.26 6.53
2753 3056 3.812577 GCCTTTTGCGCCAGTTATT 57.187 47.368 4.18 0.00 0.00 1.40
2765 3068 2.012673 CCAGTTATTGAGCTGGCACTC 58.987 52.381 0.00 9.30 44.65 3.51
2805 3109 4.056125 CAGCCCACGAGTCGCTCA 62.056 66.667 13.59 0.00 0.00 4.26
2814 3118 4.066694 AGTCGCTCACTCACTCGT 57.933 55.556 0.00 0.00 0.00 4.18
2819 3123 3.047796 GTCGCTCACTCACTCGTAAAAA 58.952 45.455 0.00 0.00 0.00 1.94
2820 3124 3.119792 GTCGCTCACTCACTCGTAAAAAG 59.880 47.826 0.00 0.00 0.00 2.27
2824 3128 5.276678 CGCTCACTCACTCGTAAAAAGAAAA 60.277 40.000 0.00 0.00 0.00 2.29
2833 3137 8.606602 TCACTCGTAAAAAGAAAAACCTAACTC 58.393 33.333 0.00 0.00 0.00 3.01
2845 3149 3.278668 ACCTAACTCTCGCTACTGCTA 57.721 47.619 0.00 0.00 36.97 3.49
2847 3151 3.628487 ACCTAACTCTCGCTACTGCTAAG 59.372 47.826 0.00 0.00 36.97 2.18
2865 3169 4.856607 CGACCGCTCGCTTCCTCC 62.857 72.222 0.00 0.00 31.91 4.30
2867 3171 3.296709 GACCGCTCGCTTCCTCCAA 62.297 63.158 0.00 0.00 0.00 3.53
2869 3173 2.176273 CCGCTCGCTTCCTCCAATG 61.176 63.158 0.00 0.00 0.00 2.82
2930 3246 7.863666 TCAAAAAGGTCATGCATTTGAATTTC 58.136 30.769 0.00 0.00 37.14 2.17
2937 3253 9.558396 AGGTCATGCATTTGAATTTCTTAAAAA 57.442 25.926 0.00 0.00 0.00 1.94
2980 3297 3.815401 AGGTTTCACGAACATGGAAAGAG 59.185 43.478 0.00 0.00 40.13 2.85
2982 3299 3.485463 TTCACGAACATGGAAAGAGGT 57.515 42.857 0.00 0.00 0.00 3.85
2983 3300 3.485463 TCACGAACATGGAAAGAGGTT 57.515 42.857 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.598894 CTCCATCGGCTCCGGCTG 62.599 72.222 8.59 6.64 45.61 4.85
25 26 2.123077 CCTCCTCCTGATCCGCCT 60.123 66.667 0.00 0.00 0.00 5.52
34 35 4.824515 CCGCCTCGTCCTCCTCCT 62.825 72.222 0.00 0.00 0.00 3.69
59 60 1.318158 CCATGTTGAAGCCCTGCTCC 61.318 60.000 0.00 0.00 38.25 4.70
61 62 1.980772 GCCATGTTGAAGCCCTGCT 60.981 57.895 0.00 0.00 42.56 4.24
62 63 2.575461 GCCATGTTGAAGCCCTGC 59.425 61.111 0.00 0.00 0.00 4.85
64 65 2.361610 CCGCCATGTTGAAGCCCT 60.362 61.111 0.00 0.00 0.00 5.19
68 69 2.753966 CGCCTCCGCCATGTTGAAG 61.754 63.158 0.00 0.00 0.00 3.02
119 126 2.194212 CAGGATGGCATGCTGCTCC 61.194 63.158 31.53 19.34 44.28 4.70
128 135 0.548031 GGATGGACTTCAGGATGGCA 59.452 55.000 0.00 0.00 36.16 4.92
142 149 0.689623 GTAGGCCTCATCCTGGATGG 59.310 60.000 30.88 22.12 40.15 3.51
148 155 1.115467 CTTCACGTAGGCCTCATCCT 58.885 55.000 9.68 0.00 40.21 3.24
158 165 0.038526 ACTCGTTGGCCTTCACGTAG 60.039 55.000 18.30 16.09 0.00 3.51
161 168 0.038526 ACTACTCGTTGGCCTTCACG 60.039 55.000 14.37 14.37 0.00 4.35
165 172 1.349067 AGGAACTACTCGTTGGCCTT 58.651 50.000 3.32 0.00 36.02 4.35
167 174 1.001633 TGAAGGAACTACTCGTTGGCC 59.998 52.381 0.00 0.00 38.49 5.36
170 177 2.989840 CTGCTGAAGGAACTACTCGTTG 59.010 50.000 0.00 0.00 38.49 4.10
171 178 3.305398 CTGCTGAAGGAACTACTCGTT 57.695 47.619 0.00 0.00 38.49 3.85
183 190 2.818714 CGCCTGCTCCTGCTGAAG 60.819 66.667 0.00 0.00 40.01 3.02
184 191 4.399395 CCGCCTGCTCCTGCTGAA 62.399 66.667 0.00 0.00 40.01 3.02
202 209 3.827784 CAAAGAGCGCGTCGGACG 61.828 66.667 25.18 25.18 45.88 4.79
203 210 4.135493 GCAAAGAGCGCGTCGGAC 62.135 66.667 8.43 0.00 0.00 4.79
212 219 0.388649 TCTCGAGTTCGGCAAAGAGC 60.389 55.000 13.13 0.00 44.65 4.09
213 220 1.335964 TGTCTCGAGTTCGGCAAAGAG 60.336 52.381 13.13 0.00 40.29 2.85
214 221 0.671796 TGTCTCGAGTTCGGCAAAGA 59.328 50.000 13.13 0.00 40.29 2.52
215 222 1.063806 CTGTCTCGAGTTCGGCAAAG 58.936 55.000 13.13 0.00 40.29 2.77
216 223 0.671796 TCTGTCTCGAGTTCGGCAAA 59.328 50.000 13.13 0.00 40.29 3.68
217 224 0.241213 CTCTGTCTCGAGTTCGGCAA 59.759 55.000 13.13 0.00 40.29 4.52
218 225 0.605589 TCTCTGTCTCGAGTTCGGCA 60.606 55.000 13.13 4.55 40.29 5.69
219 226 0.736053 ATCTCTGTCTCGAGTTCGGC 59.264 55.000 13.13 0.00 40.29 5.54
220 227 3.459145 TCTATCTCTGTCTCGAGTTCGG 58.541 50.000 13.13 11.87 40.29 4.30
221 228 3.493129 CCTCTATCTCTGTCTCGAGTTCG 59.507 52.174 13.13 1.88 41.45 3.95
222 229 4.699637 TCCTCTATCTCTGTCTCGAGTTC 58.300 47.826 13.13 7.80 32.83 3.01
223 230 4.444306 CCTCCTCTATCTCTGTCTCGAGTT 60.444 50.000 13.13 0.00 32.83 3.01
224 231 3.071023 CCTCCTCTATCTCTGTCTCGAGT 59.929 52.174 13.13 0.00 32.83 4.18
225 232 3.323691 TCCTCCTCTATCTCTGTCTCGAG 59.676 52.174 5.93 5.93 0.00 4.04
226 233 3.310193 TCCTCCTCTATCTCTGTCTCGA 58.690 50.000 0.00 0.00 0.00 4.04
227 234 3.762407 TCCTCCTCTATCTCTGTCTCG 57.238 52.381 0.00 0.00 0.00 4.04
228 235 5.241403 TCATCCTCCTCTATCTCTGTCTC 57.759 47.826 0.00 0.00 0.00 3.36
229 236 4.043310 CCTCATCCTCCTCTATCTCTGTCT 59.957 50.000 0.00 0.00 0.00 3.41
230 237 4.335416 CCTCATCCTCCTCTATCTCTGTC 58.665 52.174 0.00 0.00 0.00 3.51
231 238 3.500289 GCCTCATCCTCCTCTATCTCTGT 60.500 52.174 0.00 0.00 0.00 3.41
232 239 3.091545 GCCTCATCCTCCTCTATCTCTG 58.908 54.545 0.00 0.00 0.00 3.35
233 240 2.042979 GGCCTCATCCTCCTCTATCTCT 59.957 54.545 0.00 0.00 0.00 3.10
234 241 2.225242 TGGCCTCATCCTCCTCTATCTC 60.225 54.545 3.32 0.00 0.00 2.75
235 242 1.792026 TGGCCTCATCCTCCTCTATCT 59.208 52.381 3.32 0.00 0.00 1.98
236 243 2.178580 CTGGCCTCATCCTCCTCTATC 58.821 57.143 3.32 0.00 0.00 2.08
237 244 1.792026 TCTGGCCTCATCCTCCTCTAT 59.208 52.381 3.32 0.00 0.00 1.98
238 245 1.146774 CTCTGGCCTCATCCTCCTCTA 59.853 57.143 3.32 0.00 0.00 2.43
239 246 0.105555 CTCTGGCCTCATCCTCCTCT 60.106 60.000 3.32 0.00 0.00 3.69
240 247 1.757423 GCTCTGGCCTCATCCTCCTC 61.757 65.000 3.32 0.00 0.00 3.71
241 248 1.765657 GCTCTGGCCTCATCCTCCT 60.766 63.158 3.32 0.00 0.00 3.69
242 249 2.828145 GCTCTGGCCTCATCCTCC 59.172 66.667 3.32 0.00 0.00 4.30
243 250 2.420890 CGCTCTGGCCTCATCCTC 59.579 66.667 3.32 0.00 34.44 3.71
244 251 3.160047 CCGCTCTGGCCTCATCCT 61.160 66.667 3.32 0.00 34.44 3.24
245 252 3.157252 TCCGCTCTGGCCTCATCC 61.157 66.667 3.32 0.00 37.80 3.51
246 253 2.420890 CTCCGCTCTGGCCTCATC 59.579 66.667 3.32 0.00 37.80 2.92
247 254 3.859414 GCTCCGCTCTGGCCTCAT 61.859 66.667 3.32 0.00 37.80 2.90
249 256 4.527583 CTGCTCCGCTCTGGCCTC 62.528 72.222 3.32 0.00 37.80 4.70
253 260 3.907260 TTTGGCTGCTCCGCTCTGG 62.907 63.158 0.00 0.00 37.80 3.86
254 261 2.359107 TTTGGCTGCTCCGCTCTG 60.359 61.111 0.00 0.00 37.80 3.35
255 262 2.046507 CTTTGGCTGCTCCGCTCT 60.047 61.111 0.00 0.00 37.80 4.09
256 263 3.130160 CCTTTGGCTGCTCCGCTC 61.130 66.667 0.00 0.00 37.80 5.03
267 274 4.394712 AGCCTCCGACGCCTTTGG 62.395 66.667 0.00 0.00 0.00 3.28
268 275 2.815647 GAGCCTCCGACGCCTTTG 60.816 66.667 0.00 0.00 0.00 2.77
269 276 4.436998 CGAGCCTCCGACGCCTTT 62.437 66.667 0.00 0.00 0.00 3.11
283 290 1.004560 TTCAGTTGCAGCTCCCGAG 60.005 57.895 0.00 0.00 0.00 4.63
284 291 1.004560 CTTCAGTTGCAGCTCCCGA 60.005 57.895 0.00 0.00 0.00 5.14
285 292 0.392193 ATCTTCAGTTGCAGCTCCCG 60.392 55.000 0.00 0.00 0.00 5.14
286 293 1.471684 CAATCTTCAGTTGCAGCTCCC 59.528 52.381 0.00 0.00 0.00 4.30
287 294 2.157738 ACAATCTTCAGTTGCAGCTCC 58.842 47.619 0.00 0.00 0.00 4.70
288 295 2.159734 CGACAATCTTCAGTTGCAGCTC 60.160 50.000 0.00 0.00 0.00 4.09
289 296 1.802960 CGACAATCTTCAGTTGCAGCT 59.197 47.619 0.00 0.00 0.00 4.24
290 297 1.800586 TCGACAATCTTCAGTTGCAGC 59.199 47.619 0.00 0.00 0.00 5.25
291 298 2.802247 TGTCGACAATCTTCAGTTGCAG 59.198 45.455 17.62 0.00 0.00 4.41
292 299 2.832563 TGTCGACAATCTTCAGTTGCA 58.167 42.857 17.62 0.00 0.00 4.08
293 300 3.681897 AGATGTCGACAATCTTCAGTTGC 59.318 43.478 24.13 0.79 0.00 4.17
294 301 4.328440 GGAGATGTCGACAATCTTCAGTTG 59.672 45.833 24.13 0.00 0.00 3.16
295 302 4.499183 GGAGATGTCGACAATCTTCAGTT 58.501 43.478 24.13 1.62 0.00 3.16
296 303 3.428180 CGGAGATGTCGACAATCTTCAGT 60.428 47.826 24.13 2.48 0.00 3.41
297 304 3.111838 CGGAGATGTCGACAATCTTCAG 58.888 50.000 24.13 13.64 0.00 3.02
298 305 2.752903 TCGGAGATGTCGACAATCTTCA 59.247 45.455 24.13 11.67 0.00 3.02
299 306 3.422417 TCGGAGATGTCGACAATCTTC 57.578 47.619 24.13 20.70 0.00 2.87
307 314 1.219935 TCCTCGTCGGAGATGTCGA 59.780 57.895 0.00 0.00 45.22 4.20
308 315 3.809423 TCCTCGTCGGAGATGTCG 58.191 61.111 0.00 0.00 45.22 4.35
315 322 1.117994 TCTAGCTACTCCTCGTCGGA 58.882 55.000 0.00 0.00 40.30 4.55
316 323 2.070783 GATCTAGCTACTCCTCGTCGG 58.929 57.143 0.00 0.00 0.00 4.79
317 324 2.991190 GAGATCTAGCTACTCCTCGTCG 59.009 54.545 0.00 0.00 0.00 5.12
318 325 4.267349 AGAGATCTAGCTACTCCTCGTC 57.733 50.000 0.00 0.00 0.00 4.20
319 326 5.247564 ACATAGAGATCTAGCTACTCCTCGT 59.752 44.000 0.00 0.10 0.00 4.18
320 327 5.730550 ACATAGAGATCTAGCTACTCCTCG 58.269 45.833 0.00 0.00 0.00 4.63
321 328 7.848128 ACTACATAGAGATCTAGCTACTCCTC 58.152 42.308 0.00 5.22 0.00 3.71
322 329 7.808279 ACTACATAGAGATCTAGCTACTCCT 57.192 40.000 0.00 0.00 0.00 3.69
323 330 9.542462 CATACTACATAGAGATCTAGCTACTCC 57.458 40.741 0.00 0.00 0.00 3.85
324 331 9.042008 GCATACTACATAGAGATCTAGCTACTC 57.958 40.741 0.00 2.37 0.00 2.59
325 332 8.544622 TGCATACTACATAGAGATCTAGCTACT 58.455 37.037 0.00 0.00 0.00 2.57
326 333 8.725405 TGCATACTACATAGAGATCTAGCTAC 57.275 38.462 0.00 0.00 0.00 3.58
327 334 7.990314 CCTGCATACTACATAGAGATCTAGCTA 59.010 40.741 0.00 0.00 0.00 3.32
328 335 6.828273 CCTGCATACTACATAGAGATCTAGCT 59.172 42.308 0.00 0.00 0.00 3.32
329 336 6.601613 ACCTGCATACTACATAGAGATCTAGC 59.398 42.308 0.00 0.00 0.00 3.42
330 337 8.574251 AACCTGCATACTACATAGAGATCTAG 57.426 38.462 0.00 0.00 0.00 2.43
331 338 8.941995 AAACCTGCATACTACATAGAGATCTA 57.058 34.615 0.00 0.00 0.00 1.98
332 339 7.847711 AAACCTGCATACTACATAGAGATCT 57.152 36.000 0.00 0.00 0.00 2.75
333 340 8.894768 AAAAACCTGCATACTACATAGAGATC 57.105 34.615 0.00 0.00 0.00 2.75
335 342 9.817809 CTTAAAAACCTGCATACTACATAGAGA 57.182 33.333 0.00 0.00 0.00 3.10
336 343 9.601217 ACTTAAAAACCTGCATACTACATAGAG 57.399 33.333 0.00 0.00 0.00 2.43
337 344 9.953565 AACTTAAAAACCTGCATACTACATAGA 57.046 29.630 0.00 0.00 0.00 1.98
340 347 7.812669 GCAAACTTAAAAACCTGCATACTACAT 59.187 33.333 0.00 0.00 0.00 2.29
341 348 7.142680 GCAAACTTAAAAACCTGCATACTACA 58.857 34.615 0.00 0.00 0.00 2.74
342 349 7.142680 TGCAAACTTAAAAACCTGCATACTAC 58.857 34.615 0.00 0.00 35.02 2.73
343 350 7.278461 TGCAAACTTAAAAACCTGCATACTA 57.722 32.000 0.00 0.00 35.02 1.82
344 351 6.155475 TGCAAACTTAAAAACCTGCATACT 57.845 33.333 0.00 0.00 35.02 2.12
345 352 6.618379 GCATGCAAACTTAAAAACCTGCATAC 60.618 38.462 14.21 0.00 45.97 2.39
346 353 5.407995 GCATGCAAACTTAAAAACCTGCATA 59.592 36.000 14.21 0.00 45.97 3.14
348 355 3.559242 GCATGCAAACTTAAAAACCTGCA 59.441 39.130 14.21 0.00 43.32 4.41
349 356 3.809279 AGCATGCAAACTTAAAAACCTGC 59.191 39.130 21.98 0.00 0.00 4.85
350 357 5.989551 AAGCATGCAAACTTAAAAACCTG 57.010 34.783 21.98 0.00 0.00 4.00
351 358 6.374053 ACAAAAGCATGCAAACTTAAAAACCT 59.626 30.769 21.98 0.00 0.00 3.50
352 359 6.550843 ACAAAAGCATGCAAACTTAAAAACC 58.449 32.000 21.98 0.00 0.00 3.27
353 360 9.157259 CATACAAAAGCATGCAAACTTAAAAAC 57.843 29.630 21.98 0.00 0.00 2.43
354 361 8.341173 CCATACAAAAGCATGCAAACTTAAAAA 58.659 29.630 21.98 0.00 0.00 1.94
355 362 7.712639 TCCATACAAAAGCATGCAAACTTAAAA 59.287 29.630 21.98 0.00 0.00 1.52
356 363 7.212976 TCCATACAAAAGCATGCAAACTTAAA 58.787 30.769 21.98 0.00 0.00 1.52
357 364 6.753180 TCCATACAAAAGCATGCAAACTTAA 58.247 32.000 21.98 0.00 0.00 1.85
358 365 6.338214 TCCATACAAAAGCATGCAAACTTA 57.662 33.333 21.98 5.64 0.00 2.24
359 366 5.212532 TCCATACAAAAGCATGCAAACTT 57.787 34.783 21.98 1.65 0.00 2.66
360 367 4.870123 TCCATACAAAAGCATGCAAACT 57.130 36.364 21.98 0.00 0.00 2.66
361 368 6.147492 TCAAATCCATACAAAAGCATGCAAAC 59.853 34.615 21.98 0.00 0.00 2.93
362 369 6.147492 GTCAAATCCATACAAAAGCATGCAAA 59.853 34.615 21.98 0.00 0.00 3.68
363 370 5.638657 GTCAAATCCATACAAAAGCATGCAA 59.361 36.000 21.98 0.00 0.00 4.08
364 371 5.170021 GTCAAATCCATACAAAAGCATGCA 58.830 37.500 21.98 0.00 0.00 3.96
365 372 5.170021 TGTCAAATCCATACAAAAGCATGC 58.830 37.500 10.51 10.51 0.00 4.06
366 373 7.762615 AGATTGTCAAATCCATACAAAAGCATG 59.237 33.333 0.00 0.00 42.84 4.06
367 374 7.844009 AGATTGTCAAATCCATACAAAAGCAT 58.156 30.769 0.00 0.00 42.84 3.79
368 375 7.230849 AGATTGTCAAATCCATACAAAAGCA 57.769 32.000 0.00 0.00 42.84 3.91
369 376 8.462016 ACTAGATTGTCAAATCCATACAAAAGC 58.538 33.333 0.00 0.00 42.84 3.51
374 381 9.987272 CTCATACTAGATTGTCAAATCCATACA 57.013 33.333 0.00 0.00 42.84 2.29
377 384 9.722184 CATCTCATACTAGATTGTCAAATCCAT 57.278 33.333 0.00 0.00 42.84 3.41
378 385 8.708378 ACATCTCATACTAGATTGTCAAATCCA 58.292 33.333 0.00 0.00 42.84 3.41
379 386 9.202273 GACATCTCATACTAGATTGTCAAATCC 57.798 37.037 0.00 0.00 42.84 3.01
380 387 9.202273 GGACATCTCATACTAGATTGTCAAATC 57.798 37.037 0.00 0.00 42.26 2.17
381 388 7.869937 CGGACATCTCATACTAGATTGTCAAAT 59.130 37.037 0.00 0.00 36.64 2.32
382 389 7.203218 CGGACATCTCATACTAGATTGTCAAA 58.797 38.462 0.00 0.00 36.64 2.69
383 390 6.239036 CCGGACATCTCATACTAGATTGTCAA 60.239 42.308 0.00 0.00 36.64 3.18
384 391 5.241728 CCGGACATCTCATACTAGATTGTCA 59.758 44.000 0.00 0.00 36.64 3.58
385 392 5.473846 TCCGGACATCTCATACTAGATTGTC 59.526 44.000 0.00 0.00 33.87 3.18
386 393 5.386060 TCCGGACATCTCATACTAGATTGT 58.614 41.667 0.00 0.00 33.87 2.71
387 394 5.966742 TCCGGACATCTCATACTAGATTG 57.033 43.478 0.00 0.00 33.87 2.67
388 395 6.013379 ACATCCGGACATCTCATACTAGATT 58.987 40.000 6.12 0.00 33.87 2.40
389 396 5.575157 ACATCCGGACATCTCATACTAGAT 58.425 41.667 6.12 0.00 36.64 1.98
390 397 4.986783 ACATCCGGACATCTCATACTAGA 58.013 43.478 6.12 0.00 0.00 2.43
391 398 5.941058 ACTACATCCGGACATCTCATACTAG 59.059 44.000 6.12 0.00 0.00 2.57
392 399 5.877491 ACTACATCCGGACATCTCATACTA 58.123 41.667 6.12 0.00 0.00 1.82
393 400 4.730966 ACTACATCCGGACATCTCATACT 58.269 43.478 6.12 0.00 0.00 2.12
394 401 5.221263 ACAACTACATCCGGACATCTCATAC 60.221 44.000 6.12 0.00 0.00 2.39
395 402 4.893524 ACAACTACATCCGGACATCTCATA 59.106 41.667 6.12 0.00 0.00 2.15
396 403 3.706594 ACAACTACATCCGGACATCTCAT 59.293 43.478 6.12 0.00 0.00 2.90
397 404 3.096852 ACAACTACATCCGGACATCTCA 58.903 45.455 6.12 0.00 0.00 3.27
398 405 3.119101 ACACAACTACATCCGGACATCTC 60.119 47.826 6.12 0.00 0.00 2.75
399 406 2.832129 ACACAACTACATCCGGACATCT 59.168 45.455 6.12 0.00 0.00 2.90
400 407 3.247006 ACACAACTACATCCGGACATC 57.753 47.619 6.12 0.00 0.00 3.06
401 408 3.007506 TCAACACAACTACATCCGGACAT 59.992 43.478 6.12 0.00 0.00 3.06
402 409 2.365941 TCAACACAACTACATCCGGACA 59.634 45.455 6.12 0.00 0.00 4.02
403 410 3.034721 TCAACACAACTACATCCGGAC 57.965 47.619 6.12 0.00 0.00 4.79
404 411 3.973206 ATCAACACAACTACATCCGGA 57.027 42.857 6.61 6.61 0.00 5.14
405 412 4.454161 TCAAATCAACACAACTACATCCGG 59.546 41.667 0.00 0.00 0.00 5.14
406 413 5.390885 CCTCAAATCAACACAACTACATCCG 60.391 44.000 0.00 0.00 0.00 4.18
407 414 5.705441 TCCTCAAATCAACACAACTACATCC 59.295 40.000 0.00 0.00 0.00 3.51
408 415 6.428159 ACTCCTCAAATCAACACAACTACATC 59.572 38.462 0.00 0.00 0.00 3.06
409 416 6.205464 CACTCCTCAAATCAACACAACTACAT 59.795 38.462 0.00 0.00 0.00 2.29
410 417 5.527214 CACTCCTCAAATCAACACAACTACA 59.473 40.000 0.00 0.00 0.00 2.74
411 418 5.560953 GCACTCCTCAAATCAACACAACTAC 60.561 44.000 0.00 0.00 0.00 2.73
412 419 4.515191 GCACTCCTCAAATCAACACAACTA 59.485 41.667 0.00 0.00 0.00 2.24
413 420 3.316308 GCACTCCTCAAATCAACACAACT 59.684 43.478 0.00 0.00 0.00 3.16
414 421 3.550842 GGCACTCCTCAAATCAACACAAC 60.551 47.826 0.00 0.00 0.00 3.32
415 422 2.622942 GGCACTCCTCAAATCAACACAA 59.377 45.455 0.00 0.00 0.00 3.33
416 423 2.229792 GGCACTCCTCAAATCAACACA 58.770 47.619 0.00 0.00 0.00 3.72
417 424 1.541588 GGGCACTCCTCAAATCAACAC 59.458 52.381 0.00 0.00 0.00 3.32
418 425 1.881925 CGGGCACTCCTCAAATCAACA 60.882 52.381 0.00 0.00 0.00 3.33
419 426 0.804989 CGGGCACTCCTCAAATCAAC 59.195 55.000 0.00 0.00 0.00 3.18
420 427 0.690192 TCGGGCACTCCTCAAATCAA 59.310 50.000 0.00 0.00 0.00 2.57
421 428 0.911769 ATCGGGCACTCCTCAAATCA 59.088 50.000 0.00 0.00 0.00 2.57
422 429 1.134401 TGATCGGGCACTCCTCAAATC 60.134 52.381 0.00 0.00 0.00 2.17
423 430 0.911769 TGATCGGGCACTCCTCAAAT 59.088 50.000 0.00 0.00 0.00 2.32
424 431 0.036388 GTGATCGGGCACTCCTCAAA 60.036 55.000 2.00 0.00 35.91 2.69
425 432 0.904865 AGTGATCGGGCACTCCTCAA 60.905 55.000 5.44 0.00 45.54 3.02
426 433 1.305297 AGTGATCGGGCACTCCTCA 60.305 57.895 5.44 0.00 45.54 3.86
427 434 1.142748 CAGTGATCGGGCACTCCTC 59.857 63.158 7.91 0.00 45.54 3.71
428 435 3.023949 GCAGTGATCGGGCACTCCT 62.024 63.158 7.91 0.00 45.54 3.69
429 436 2.512515 GCAGTGATCGGGCACTCC 60.513 66.667 7.91 0.00 45.54 3.85
430 437 2.512515 GGCAGTGATCGGGCACTC 60.513 66.667 7.91 4.57 45.54 3.51
437 444 4.592192 ATCCGCGGGCAGTGATCG 62.592 66.667 27.83 0.00 0.00 3.69
438 445 2.969238 CATCCGCGGGCAGTGATC 60.969 66.667 27.83 0.00 0.00 2.92
449 456 2.845752 TAACCCTCACACGCATCCGC 62.846 60.000 0.00 0.00 38.22 5.54
450 457 0.806102 CTAACCCTCACACGCATCCG 60.806 60.000 0.00 0.00 41.14 4.18
451 458 0.535335 TCTAACCCTCACACGCATCC 59.465 55.000 0.00 0.00 0.00 3.51
452 459 2.604046 ATCTAACCCTCACACGCATC 57.396 50.000 0.00 0.00 0.00 3.91
453 460 3.350219 AAATCTAACCCTCACACGCAT 57.650 42.857 0.00 0.00 0.00 4.73
454 461 2.851263 AAATCTAACCCTCACACGCA 57.149 45.000 0.00 0.00 0.00 5.24
455 462 3.119955 GGAAAAATCTAACCCTCACACGC 60.120 47.826 0.00 0.00 0.00 5.34
456 463 4.324267 AGGAAAAATCTAACCCTCACACG 58.676 43.478 0.00 0.00 0.00 4.49
457 464 6.183360 GCATAGGAAAAATCTAACCCTCACAC 60.183 42.308 0.00 0.00 0.00 3.82
458 465 5.885912 GCATAGGAAAAATCTAACCCTCACA 59.114 40.000 0.00 0.00 0.00 3.58
459 466 5.007724 CGCATAGGAAAAATCTAACCCTCAC 59.992 44.000 0.00 0.00 0.00 3.51
460 467 5.123227 CGCATAGGAAAAATCTAACCCTCA 58.877 41.667 0.00 0.00 0.00 3.86
461 468 4.023963 GCGCATAGGAAAAATCTAACCCTC 60.024 45.833 0.30 0.00 0.00 4.30
462 469 3.883489 GCGCATAGGAAAAATCTAACCCT 59.117 43.478 0.30 0.00 0.00 4.34
463 470 3.004419 GGCGCATAGGAAAAATCTAACCC 59.996 47.826 10.83 0.00 0.00 4.11
464 471 3.883489 AGGCGCATAGGAAAAATCTAACC 59.117 43.478 10.83 0.00 0.00 2.85
465 472 4.335594 ACAGGCGCATAGGAAAAATCTAAC 59.664 41.667 10.83 0.00 0.00 2.34
466 473 4.523083 ACAGGCGCATAGGAAAAATCTAA 58.477 39.130 10.83 0.00 0.00 2.10
467 474 4.150897 ACAGGCGCATAGGAAAAATCTA 57.849 40.909 10.83 0.00 0.00 1.98
468 475 3.004752 ACAGGCGCATAGGAAAAATCT 57.995 42.857 10.83 0.00 0.00 2.40
469 476 4.127171 TCTACAGGCGCATAGGAAAAATC 58.873 43.478 10.83 0.00 0.00 2.17
470 477 4.150897 TCTACAGGCGCATAGGAAAAAT 57.849 40.909 10.83 0.00 0.00 1.82
471 478 3.620427 TCTACAGGCGCATAGGAAAAA 57.380 42.857 10.83 0.00 0.00 1.94
472 479 3.838244 ATCTACAGGCGCATAGGAAAA 57.162 42.857 10.83 0.00 0.00 2.29
473 480 3.895656 AGTATCTACAGGCGCATAGGAAA 59.104 43.478 10.83 0.00 0.00 3.13
474 481 3.497332 AGTATCTACAGGCGCATAGGAA 58.503 45.455 10.83 0.00 0.00 3.36
475 482 3.082548 GAGTATCTACAGGCGCATAGGA 58.917 50.000 10.83 1.00 0.00 2.94
476 483 3.495670 GAGTATCTACAGGCGCATAGG 57.504 52.381 10.83 0.00 0.00 2.57
493 500 4.225267 CCCCAAGTATCCAAGTACAAGAGT 59.775 45.833 0.00 0.00 0.00 3.24
498 505 4.163458 GTGATCCCCAAGTATCCAAGTACA 59.837 45.833 0.00 0.00 0.00 2.90
499 506 4.704965 GTGATCCCCAAGTATCCAAGTAC 58.295 47.826 0.00 0.00 0.00 2.73
506 513 5.046591 TGGATTATCGTGATCCCCAAGTATC 60.047 44.000 10.44 0.00 41.97 2.24
507 514 4.844085 TGGATTATCGTGATCCCCAAGTAT 59.156 41.667 10.44 0.00 41.97 2.12
508 515 4.039973 GTGGATTATCGTGATCCCCAAGTA 59.960 45.833 10.44 0.00 41.97 2.24
509 516 3.045634 TGGATTATCGTGATCCCCAAGT 58.954 45.455 10.44 0.00 41.97 3.16
510 517 3.403038 GTGGATTATCGTGATCCCCAAG 58.597 50.000 10.44 0.00 41.97 3.61
511 518 2.224185 CGTGGATTATCGTGATCCCCAA 60.224 50.000 10.44 0.00 41.97 4.12
513 520 1.337823 CCGTGGATTATCGTGATCCCC 60.338 57.143 10.44 1.22 41.97 4.81
622 630 4.760530 ACATGTCAAAGATGCTAGCCTA 57.239 40.909 13.29 0.00 0.00 3.93
634 642 9.562408 TTTCATTGTAGGTACTAACATGTCAAA 57.438 29.630 0.00 0.00 45.48 2.69
666 674 6.317642 CCCTGTTTGACATGGACGAATATTAA 59.682 38.462 0.00 0.00 36.17 1.40
670 678 3.605634 CCCTGTTTGACATGGACGAATA 58.394 45.455 0.00 0.00 36.17 1.75
723 731 2.038387 ACAACTTATTAGGGGCTGCG 57.962 50.000 0.00 0.00 0.00 5.18
725 733 6.177610 TCTGTTTACAACTTATTAGGGGCTG 58.822 40.000 0.00 0.00 0.00 4.85
739 747 3.496884 GTGAACTGGCGATCTGTTTACAA 59.503 43.478 13.95 0.00 40.73 2.41
750 758 0.320683 CCATGTGAGTGAACTGGCGA 60.321 55.000 0.00 0.00 0.00 5.54
782 790 9.239002 CTTATAATTTGAAGTCAGAGTACGAGG 57.761 37.037 0.00 0.00 0.00 4.63
836 848 5.619981 GCGCCTGTACTTCTTTTGATTCAAT 60.620 40.000 0.00 0.00 0.00 2.57
861 873 2.601067 TGGCCACTGCAACATGGG 60.601 61.111 0.00 0.00 40.13 4.00
884 896 0.957395 AGGAAAGTCGTCGGCTCGTA 60.957 55.000 0.00 0.00 0.00 3.43
928 945 7.205297 TGTCGCCCTTTTATACACTAGATTAC 58.795 38.462 0.00 0.00 0.00 1.89
935 952 5.296035 GCTAAATGTCGCCCTTTTATACACT 59.704 40.000 0.00 0.00 0.00 3.55
969 986 1.795170 TTTCGCCTTTGCTGCTGGAC 61.795 55.000 0.00 0.00 34.43 4.02
1254 1311 1.690219 GCTCCCTGGACACGATGGAT 61.690 60.000 0.00 0.00 0.00 3.41
1320 1386 1.130411 GTACGTGTAAAACCCGCGC 59.870 57.895 0.00 0.00 39.31 6.86
1384 1450 2.248431 GTTGGTGCTGAACGTCGC 59.752 61.111 0.00 0.00 0.00 5.19
1810 2064 2.040009 ATCACGCCATACCCGGGAAG 62.040 60.000 32.02 16.16 41.93 3.46
1830 2084 1.364721 CGCCGTTGATGATGTTGGTA 58.635 50.000 0.00 0.00 0.00 3.25
1907 2163 0.435008 GAGAACGTTGCAGTAGCGTG 59.565 55.000 5.00 0.00 45.78 5.34
1961 2217 4.170062 CGGTGAATGGCTGCTGCG 62.170 66.667 9.65 0.00 40.82 5.18
1989 2245 0.387202 GCGAGCCAGCTGAGAATCTA 59.613 55.000 17.39 0.00 34.92 1.98
2011 2268 1.961277 CGAGTGCCCACTTGTGACC 60.961 63.158 2.02 0.00 42.66 4.02
2075 2332 9.912634 TCTCCTAAACAATAAAGAAAATTGCTG 57.087 29.630 0.00 0.00 37.77 4.41
2076 2333 9.914131 GTCTCCTAAACAATAAAGAAAATTGCT 57.086 29.630 0.00 0.00 37.77 3.91
2153 2412 8.717717 ACATGATAAGTTCTGGAAATGAGGATA 58.282 33.333 0.00 0.00 0.00 2.59
2168 2427 5.191727 TGGTGGATCCAACATGATAAGTT 57.808 39.130 29.05 0.00 44.12 2.66
2198 2458 7.704899 TGACGACGATAATGATGATTTGTACTT 59.295 33.333 0.00 0.00 0.00 2.24
2199 2459 7.167635 GTGACGACGATAATGATGATTTGTACT 59.832 37.037 0.00 0.00 0.00 2.73
2231 2491 0.630673 ATGCTCCCCACAATGCCTTA 59.369 50.000 0.00 0.00 0.00 2.69
2259 2519 3.380004 GGTGTTGTTTGTGAAGATGGTGA 59.620 43.478 0.00 0.00 0.00 4.02
2282 2542 3.322254 GGGGTGACATCGAAGATGTAGAT 59.678 47.826 14.69 0.00 45.12 1.98
2294 2555 1.545582 CAAACACATGGGGGTGACATC 59.454 52.381 0.00 0.00 41.32 3.06
2400 2688 1.868109 GCGAGTCACGGCATAAGCATA 60.868 52.381 0.00 0.00 44.61 3.14
2411 2699 0.165295 TGAACTACTCGCGAGTCACG 59.835 55.000 42.28 31.20 42.54 4.35
2418 2706 5.950965 AAGAATGTAATGAACTACTCGCG 57.049 39.130 0.00 0.00 0.00 5.87
2452 2754 8.297426 CGAGTCTAGGATTTGTAGCATATGTTA 58.703 37.037 4.29 0.00 0.00 2.41
2464 2766 3.891977 TCCCTGATCGAGTCTAGGATTTG 59.108 47.826 8.19 0.00 30.94 2.32
2482 2784 5.183530 TGAGTGACAATGAATCATTCCCT 57.816 39.130 5.36 0.00 33.18 4.20
2494 2796 3.677148 CGTAGGCAGACATGAGTGACAAT 60.677 47.826 0.00 0.00 0.00 2.71
2498 2800 1.834188 TCGTAGGCAGACATGAGTGA 58.166 50.000 0.00 0.00 0.00 3.41
2499 2801 2.879002 ATCGTAGGCAGACATGAGTG 57.121 50.000 0.00 0.00 0.00 3.51
2507 2809 1.320344 ACAGCGGAATCGTAGGCAGA 61.320 55.000 0.00 0.00 38.89 4.26
2519 2821 5.707242 ATAGAAATCTCGAATACAGCGGA 57.293 39.130 0.00 0.00 0.00 5.54
2558 2861 8.506168 TCAGTTCATATTCTTTTAAATCCGCT 57.494 30.769 0.00 0.00 0.00 5.52
2587 2890 8.624776 CCTAGGGAGCATAGAATTTTAAAACAG 58.375 37.037 1.97 0.00 0.00 3.16
2590 2893 9.936329 ATTCCTAGGGAGCATAGAATTTTAAAA 57.064 29.630 9.46 2.51 31.21 1.52
2619 2922 1.619654 TCCCAATGCACCAAGAACTG 58.380 50.000 0.00 0.00 0.00 3.16
2620 2923 2.610438 ATCCCAATGCACCAAGAACT 57.390 45.000 0.00 0.00 0.00 3.01
2652 2955 1.812507 CGTAAAGGTAGGCCCACGC 60.813 63.158 0.00 0.00 34.66 5.34
2672 2975 3.733443 ACTTGAACATGCAAAAGTCCC 57.267 42.857 0.00 0.00 0.00 4.46
2675 2978 5.581874 CCAAAGAACTTGAACATGCAAAAGT 59.418 36.000 0.00 0.00 37.17 2.66
2676 2979 5.006941 CCCAAAGAACTTGAACATGCAAAAG 59.993 40.000 0.00 0.00 37.17 2.27
2688 2991 0.040425 CGAACGGCCCAAAGAACTTG 60.040 55.000 0.00 0.00 34.52 3.16
2690 2993 0.883370 GACGAACGGCCCAAAGAACT 60.883 55.000 0.00 0.00 0.00 3.01
2694 2997 1.501741 CATGACGAACGGCCCAAAG 59.498 57.895 0.00 0.00 0.00 2.77
2702 3005 0.038618 TCCAGACACCATGACGAACG 60.039 55.000 0.00 0.00 0.00 3.95
2722 3025 1.134946 CAAAAGGCGCCAATTAGGAGG 59.865 52.381 31.54 6.66 41.22 4.30
2737 3040 2.095059 AGCTCAATAACTGGCGCAAAAG 60.095 45.455 10.83 6.04 0.00 2.27
2752 3055 2.666190 GTGCGAGTGCCAGCTCAA 60.666 61.111 0.00 0.00 41.78 3.02
2753 3056 4.687215 GGTGCGAGTGCCAGCTCA 62.687 66.667 0.00 0.00 41.78 4.26
2799 3102 3.004002 TCTTTTTACGAGTGAGTGAGCGA 59.996 43.478 0.00 0.00 0.00 4.93
2805 3109 6.997239 AGGTTTTTCTTTTTACGAGTGAGT 57.003 33.333 0.00 0.00 0.00 3.41
2809 3113 8.728337 AGAGTTAGGTTTTTCTTTTTACGAGT 57.272 30.769 0.00 0.00 0.00 4.18
2814 3118 7.797038 AGCGAGAGTTAGGTTTTTCTTTTTA 57.203 32.000 0.00 0.00 0.00 1.52
2819 3123 5.471257 CAGTAGCGAGAGTTAGGTTTTTCT 58.529 41.667 0.00 0.00 0.00 2.52
2820 3124 4.091655 GCAGTAGCGAGAGTTAGGTTTTTC 59.908 45.833 0.00 0.00 0.00 2.29
2824 3128 2.943449 GCAGTAGCGAGAGTTAGGTT 57.057 50.000 0.00 0.00 0.00 3.50
2861 3165 6.991531 TGGATTTTCTTGAAAAACATTGGAGG 59.008 34.615 11.78 0.00 0.00 4.30
2902 3206 7.804843 TTCAAATGCATGACCTTTTTGAATT 57.195 28.000 14.85 0.00 39.84 2.17
2903 3207 7.989416 ATTCAAATGCATGACCTTTTTGAAT 57.011 28.000 20.98 20.98 45.02 2.57
2904 3208 7.804843 AATTCAAATGCATGACCTTTTTGAA 57.195 28.000 19.00 19.00 45.18 2.69
2905 3209 7.716123 AGAAATTCAAATGCATGACCTTTTTGA 59.284 29.630 0.00 2.29 35.23 2.69
2906 3210 7.867752 AGAAATTCAAATGCATGACCTTTTTG 58.132 30.769 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.