Multiple sequence alignment - TraesCS5A01G405500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G405500 chr5A 100.000 3090 0 0 1 3090 597266701 597263612 0.000000e+00 5707.0
1 TraesCS5A01G405500 chr5A 91.390 1115 78 10 844 1946 597280315 597279207 0.000000e+00 1511.0
2 TraesCS5A01G405500 chr5A 83.391 867 115 29 2204 3053 597278763 597277909 0.000000e+00 776.0
3 TraesCS5A01G405500 chr5A 82.181 376 59 6 266 638 601646703 601647073 1.790000e-82 316.0
4 TraesCS5A01G405500 chr5A 86.567 268 26 5 1 261 597281869 597281605 1.400000e-73 287.0
5 TraesCS5A01G405500 chr5A 92.727 110 7 1 650 759 597280581 597280473 1.150000e-34 158.0
6 TraesCS5A01G405500 chr5A 91.111 45 4 0 1940 1984 663925168 663925212 9.250000e-06 62.1
7 TraesCS5A01G405500 chr5B 96.483 1109 32 4 844 1946 585496163 585495056 0.000000e+00 1825.0
8 TraesCS5A01G405500 chr5B 80.724 939 123 29 2204 3090 585494649 585493717 0.000000e+00 678.0
9 TraesCS5A01G405500 chr5B 84.892 278 25 9 1 266 585505713 585505441 6.570000e-67 265.0
10 TraesCS5A01G405500 chr5D 94.404 1108 44 9 844 1944 478001271 478000175 0.000000e+00 1687.0
11 TraesCS5A01G405500 chr5D 82.721 926 116 26 2204 3090 477999748 477998828 0.000000e+00 784.0
12 TraesCS5A01G405500 chr5D 91.495 388 33 0 265 652 200495460 200495847 4.540000e-148 534.0
13 TraesCS5A01G405500 chr5D 89.925 268 23 3 1 266 478001795 478001530 2.950000e-90 342.0
14 TraesCS5A01G405500 chr5D 84.416 77 6 6 2900 2975 495909033 495908962 1.540000e-08 71.3
15 TraesCS5A01G405500 chr1D 85.253 868 109 10 1079 1938 342170244 342171100 0.000000e+00 876.0
16 TraesCS5A01G405500 chr1D 76.768 198 31 6 12 194 447663116 447663313 2.540000e-16 97.1
17 TraesCS5A01G405500 chr1A 85.219 866 113 7 1079 1938 441841983 441842839 0.000000e+00 876.0
18 TraesCS5A01G405500 chr1B 84.897 874 107 12 1079 1938 458263006 458263868 0.000000e+00 859.0
19 TraesCS5A01G405500 chr1B 84.642 879 109 13 1079 1938 458081469 458082340 0.000000e+00 852.0
20 TraesCS5A01G405500 chr1B 84.668 874 109 12 1079 1938 458129638 458130500 0.000000e+00 848.0
21 TraesCS5A01G405500 chr2B 79.048 840 142 20 1128 1948 796341291 796342115 2.100000e-151 545.0
22 TraesCS5A01G405500 chrUn 87.629 388 48 0 265 652 50269531 50269144 4.700000e-123 451.0
23 TraesCS5A01G405500 chrUn 88.856 341 38 0 265 605 389379686 389380026 1.330000e-113 420.0
24 TraesCS5A01G405500 chrUn 88.856 341 38 0 265 605 473461563 473461903 1.330000e-113 420.0
25 TraesCS5A01G405500 chr2A 79.710 552 98 10 1403 1948 761541929 761541386 1.340000e-103 387.0
26 TraesCS5A01G405500 chr7A 84.946 372 55 1 267 638 576420964 576420594 2.910000e-100 375.0
27 TraesCS5A01G405500 chr7A 84.615 377 56 2 264 638 658689046 658689422 1.050000e-99 374.0
28 TraesCS5A01G405500 chr7A 79.061 277 41 12 1 261 625682558 625682833 1.140000e-39 174.0
29 TraesCS5A01G405500 chr4B 83.505 388 64 0 265 652 638313961 638313574 2.260000e-96 363.0
30 TraesCS5A01G405500 chr6A 83.033 389 65 1 265 652 587563131 587562743 4.900000e-93 351.0
31 TraesCS5A01G405500 chr6A 75.285 263 37 11 12 259 604899329 604899080 1.960000e-17 100.0
32 TraesCS5A01G405500 chr6B 80.899 178 20 6 10 174 697735302 697735478 8.990000e-26 128.0
33 TraesCS5A01G405500 chr3B 77.404 208 31 8 7 198 25919590 25919797 3.260000e-20 110.0
34 TraesCS5A01G405500 chr3B 76.667 210 31 8 7 198 26055699 26055908 1.960000e-17 100.0
35 TraesCS5A01G405500 chr3D 100.000 32 0 0 1956 1987 160906643 160906612 3.330000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G405500 chr5A 597263612 597266701 3089 True 5707.000000 5707 100.000000 1 3090 1 chr5A.!!$R1 3089
1 TraesCS5A01G405500 chr5A 597277909 597281869 3960 True 683.000000 1511 88.518750 1 3053 4 chr5A.!!$R2 3052
2 TraesCS5A01G405500 chr5B 585493717 585496163 2446 True 1251.500000 1825 88.603500 844 3090 2 chr5B.!!$R2 2246
3 TraesCS5A01G405500 chr5D 477998828 478001795 2967 True 937.666667 1687 89.016667 1 3090 3 chr5D.!!$R2 3089
4 TraesCS5A01G405500 chr1D 342170244 342171100 856 False 876.000000 876 85.253000 1079 1938 1 chr1D.!!$F1 859
5 TraesCS5A01G405500 chr1A 441841983 441842839 856 False 876.000000 876 85.219000 1079 1938 1 chr1A.!!$F1 859
6 TraesCS5A01G405500 chr1B 458263006 458263868 862 False 859.000000 859 84.897000 1079 1938 1 chr1B.!!$F3 859
7 TraesCS5A01G405500 chr1B 458081469 458082340 871 False 852.000000 852 84.642000 1079 1938 1 chr1B.!!$F1 859
8 TraesCS5A01G405500 chr1B 458129638 458130500 862 False 848.000000 848 84.668000 1079 1938 1 chr1B.!!$F2 859
9 TraesCS5A01G405500 chr2B 796341291 796342115 824 False 545.000000 545 79.048000 1128 1948 1 chr2B.!!$F1 820
10 TraesCS5A01G405500 chr2A 761541386 761541929 543 True 387.000000 387 79.710000 1403 1948 1 chr2A.!!$R1 545

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
832 1521 0.036294 AGCCTCGTTGTTTAGAGCCC 60.036 55.0 0.0 0.0 33.39 5.19 F
834 1523 0.613777 CCTCGTTGTTTAGAGCCCCT 59.386 55.0 0.0 0.0 33.39 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1940 2710 0.312416 GCGTTTACACATTGCCCACA 59.688 50.0 0.0 0.0 0.00 4.17 R
2399 3405 0.313987 CGACATCGTAGGCAGGCATA 59.686 55.0 0.0 0.0 34.11 3.14 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
130 131 4.437239 TGAAATTTGCACCGAATTTGTGT 58.563 34.783 11.36 0.00 37.51 3.72
184 192 4.043037 AGAAACGACACTTTTCTCGAGT 57.957 40.909 13.13 0.00 38.67 4.18
187 195 4.825546 AACGACACTTTTCTCGAGTAGA 57.174 40.909 13.13 0.00 33.96 2.59
207 215 7.278875 AGTAGAAAATATGCTCCTCCAAAGAG 58.721 38.462 0.00 0.00 40.09 2.85
247 255 9.597681 ACTCCTCTAAATTATAGGAAATCGGTA 57.402 33.333 8.25 0.00 38.91 4.02
266 274 5.594725 TCGGTAAGAGATGCTCTCATACTTT 59.405 40.000 18.96 8.19 45.73 2.66
268 276 6.758886 CGGTAAGAGATGCTCTCATACTTTTT 59.241 38.462 18.96 7.26 45.73 1.94
290 298 7.556733 TTTTTAGAAAGAACGTCAGCCTTTA 57.443 32.000 0.00 0.00 31.06 1.85
291 299 7.739498 TTTTAGAAAGAACGTCAGCCTTTAT 57.261 32.000 0.00 0.00 31.06 1.40
293 301 8.836268 TTTAGAAAGAACGTCAGCCTTTATTA 57.164 30.769 0.00 0.00 31.06 0.98
295 303 7.923414 AGAAAGAACGTCAGCCTTTATTAAT 57.077 32.000 0.00 0.00 31.06 1.40
301 309 6.995511 ACGTCAGCCTTTATTAATTAAGCA 57.004 33.333 8.40 0.00 0.00 3.91
302 310 7.385778 ACGTCAGCCTTTATTAATTAAGCAA 57.614 32.000 8.40 0.00 0.00 3.91
303 311 7.248437 ACGTCAGCCTTTATTAATTAAGCAAC 58.752 34.615 8.40 3.79 0.00 4.17
304 312 7.094549 ACGTCAGCCTTTATTAATTAAGCAACA 60.095 33.333 8.40 0.00 0.00 3.33
306 314 9.418045 GTCAGCCTTTATTAATTAAGCAACAAA 57.582 29.630 8.40 0.00 0.00 2.83
307 315 9.418045 TCAGCCTTTATTAATTAAGCAACAAAC 57.582 29.630 8.40 0.00 0.00 2.93
308 316 9.423061 CAGCCTTTATTAATTAAGCAACAAACT 57.577 29.630 8.40 0.00 0.00 2.66
317 325 9.944663 TTAATTAAGCAACAAACTTACACAGAG 57.055 29.630 0.00 0.00 29.52 3.35
318 326 6.995511 TTAAGCAACAAACTTACACAGAGT 57.004 33.333 0.00 0.00 29.52 3.24
320 328 4.770795 AGCAACAAACTTACACAGAGTCT 58.229 39.130 0.00 0.00 0.00 3.24
321 329 5.186198 AGCAACAAACTTACACAGAGTCTT 58.814 37.500 0.00 0.00 0.00 3.01
322 330 5.294552 AGCAACAAACTTACACAGAGTCTTC 59.705 40.000 0.00 0.00 0.00 2.87
323 331 5.504173 GCAACAAACTTACACAGAGTCTTCC 60.504 44.000 0.00 0.00 0.00 3.46
326 334 2.872732 ACTTACACAGAGTCTTCCGGA 58.127 47.619 0.00 0.00 0.00 5.14
327 335 3.432378 ACTTACACAGAGTCTTCCGGAT 58.568 45.455 4.15 0.00 0.00 4.18
328 336 3.193691 ACTTACACAGAGTCTTCCGGATG 59.806 47.826 4.15 8.29 0.00 3.51
330 338 0.247460 CACAGAGTCTTCCGGATGCA 59.753 55.000 4.15 0.00 0.00 3.96
331 339 0.976641 ACAGAGTCTTCCGGATGCAA 59.023 50.000 4.15 0.00 0.00 4.08
342 350 4.863707 GATGCAATCCGGAGCAGA 57.136 55.556 21.33 1.72 44.94 4.26
343 351 3.085208 GATGCAATCCGGAGCAGAA 57.915 52.632 21.33 4.24 44.94 3.02
346 354 0.674581 TGCAATCCGGAGCAGAACAG 60.675 55.000 13.98 0.00 35.51 3.16
348 356 1.945819 GCAATCCGGAGCAGAACAGAA 60.946 52.381 11.34 0.00 0.00 3.02
349 357 2.426522 CAATCCGGAGCAGAACAGAAA 58.573 47.619 11.34 0.00 0.00 2.52
350 358 2.813754 CAATCCGGAGCAGAACAGAAAA 59.186 45.455 11.34 0.00 0.00 2.29
351 359 2.859165 TCCGGAGCAGAACAGAAAAT 57.141 45.000 0.00 0.00 0.00 1.82
352 360 3.973206 TCCGGAGCAGAACAGAAAATA 57.027 42.857 0.00 0.00 0.00 1.40
353 361 3.596214 TCCGGAGCAGAACAGAAAATAC 58.404 45.455 0.00 0.00 0.00 1.89
354 362 3.007506 TCCGGAGCAGAACAGAAAATACA 59.992 43.478 0.00 0.00 0.00 2.29
355 363 3.751175 CCGGAGCAGAACAGAAAATACAA 59.249 43.478 0.00 0.00 0.00 2.41
356 364 4.215399 CCGGAGCAGAACAGAAAATACAAA 59.785 41.667 0.00 0.00 0.00 2.83
357 365 5.385617 CGGAGCAGAACAGAAAATACAAAG 58.614 41.667 0.00 0.00 0.00 2.77
358 366 5.179368 CGGAGCAGAACAGAAAATACAAAGA 59.821 40.000 0.00 0.00 0.00 2.52
359 367 6.374578 GGAGCAGAACAGAAAATACAAAGAC 58.625 40.000 0.00 0.00 0.00 3.01
360 368 6.205658 GGAGCAGAACAGAAAATACAAAGACT 59.794 38.462 0.00 0.00 0.00 3.24
361 369 7.387948 GGAGCAGAACAGAAAATACAAAGACTA 59.612 37.037 0.00 0.00 0.00 2.59
364 372 7.387948 GCAGAACAGAAAATACAAAGACTAGGA 59.612 37.037 0.00 0.00 0.00 2.94
365 373 8.930760 CAGAACAGAAAATACAAAGACTAGGAG 58.069 37.037 0.00 0.00 0.00 3.69
366 374 8.871125 AGAACAGAAAATACAAAGACTAGGAGA 58.129 33.333 0.00 0.00 0.00 3.71
367 375 9.145865 GAACAGAAAATACAAAGACTAGGAGAG 57.854 37.037 0.00 0.00 0.00 3.20
368 376 8.196378 ACAGAAAATACAAAGACTAGGAGAGT 57.804 34.615 0.00 0.00 42.90 3.24
369 377 8.652290 ACAGAAAATACAAAGACTAGGAGAGTT 58.348 33.333 0.00 0.00 39.06 3.01
370 378 9.145865 CAGAAAATACAAAGACTAGGAGAGTTC 57.854 37.037 0.00 0.00 39.06 3.01
371 379 8.871125 AGAAAATACAAAGACTAGGAGAGTTCA 58.129 33.333 0.00 0.00 39.06 3.18
373 381 9.847224 AAAATACAAAGACTAGGAGAGTTCAAA 57.153 29.630 0.00 0.00 39.06 2.69
374 382 8.834749 AATACAAAGACTAGGAGAGTTCAAAC 57.165 34.615 0.00 0.00 39.06 2.93
376 384 7.598759 ACAAAGACTAGGAGAGTTCAAACTA 57.401 36.000 0.00 0.00 39.06 2.24
377 385 7.662897 ACAAAGACTAGGAGAGTTCAAACTAG 58.337 38.462 0.00 0.00 39.06 2.57
379 387 8.527810 CAAAGACTAGGAGAGTTCAAACTAGAT 58.472 37.037 0.00 0.00 39.06 1.98
380 388 7.875327 AGACTAGGAGAGTTCAAACTAGATC 57.125 40.000 0.00 0.00 39.06 2.75
382 390 8.774183 AGACTAGGAGAGTTCAAACTAGATCTA 58.226 37.037 1.69 1.69 39.06 1.98
383 391 8.974060 ACTAGGAGAGTTCAAACTAGATCTAG 57.026 38.462 25.26 25.26 39.88 2.43
384 392 6.709018 AGGAGAGTTCAAACTAGATCTAGC 57.291 41.667 26.50 11.33 39.88 3.42
385 393 6.431722 AGGAGAGTTCAAACTAGATCTAGCT 58.568 40.000 26.50 14.32 39.88 3.32
386 394 7.579105 AGGAGAGTTCAAACTAGATCTAGCTA 58.421 38.462 26.50 9.26 39.88 3.32
387 395 7.719633 AGGAGAGTTCAAACTAGATCTAGCTAG 59.280 40.741 26.50 15.01 42.77 3.42
388 396 7.040686 GGAGAGTTCAAACTAGATCTAGCTAGG 60.041 44.444 26.50 15.02 41.69 3.02
389 397 7.579105 AGAGTTCAAACTAGATCTAGCTAGGA 58.421 38.462 26.50 16.79 41.69 2.94
390 398 8.224720 AGAGTTCAAACTAGATCTAGCTAGGAT 58.775 37.037 26.50 12.31 41.69 3.24
391 399 9.509956 GAGTTCAAACTAGATCTAGCTAGGATA 57.490 37.037 26.50 9.94 41.69 2.59
395 403 9.679661 TCAAACTAGATCTAGCTAGGATATGAG 57.320 37.037 26.50 12.35 41.69 2.90
408 416 7.831753 GCTAGGATATGAGCTAGAACATTACA 58.168 38.462 0.00 0.00 35.73 2.41
410 418 7.847711 AGGATATGAGCTAGAACATTACACT 57.152 36.000 0.00 0.00 0.00 3.55
411 419 7.665690 AGGATATGAGCTAGAACATTACACTG 58.334 38.462 0.00 0.00 0.00 3.66
413 421 7.596995 GGATATGAGCTAGAACATTACACTGTC 59.403 40.741 0.00 0.00 0.00 3.51
414 422 4.733850 TGAGCTAGAACATTACACTGTCG 58.266 43.478 0.00 0.00 0.00 4.35
416 424 5.125578 TGAGCTAGAACATTACACTGTCGAT 59.874 40.000 0.00 0.00 0.00 3.59
418 426 5.125578 AGCTAGAACATTACACTGTCGATGA 59.874 40.000 10.78 0.00 0.00 2.92
422 430 6.166279 AGAACATTACACTGTCGATGAACAT 58.834 36.000 10.78 0.00 0.00 2.71
423 431 5.784750 ACATTACACTGTCGATGAACATG 57.215 39.130 10.78 0.00 0.00 3.21
425 433 2.462456 ACACTGTCGATGAACATGCT 57.538 45.000 0.00 0.00 0.00 3.79
426 434 2.071540 ACACTGTCGATGAACATGCTG 58.928 47.619 0.00 0.00 0.00 4.41
427 435 1.395954 CACTGTCGATGAACATGCTGG 59.604 52.381 0.00 0.00 0.00 4.85
428 436 1.276138 ACTGTCGATGAACATGCTGGA 59.724 47.619 0.00 0.00 0.00 3.86
429 437 2.289631 ACTGTCGATGAACATGCTGGAA 60.290 45.455 0.00 0.00 0.00 3.53
441 449 4.681421 CTGGAAGCAAGCAGACGA 57.319 55.556 0.00 0.00 0.00 4.20
442 450 2.453843 CTGGAAGCAAGCAGACGAG 58.546 57.895 0.00 0.00 0.00 4.18
443 451 0.037882 CTGGAAGCAAGCAGACGAGA 60.038 55.000 0.00 0.00 0.00 4.04
444 452 0.037882 TGGAAGCAAGCAGACGAGAG 60.038 55.000 0.00 0.00 0.00 3.20
445 453 0.739112 GGAAGCAAGCAGACGAGAGG 60.739 60.000 0.00 0.00 0.00 3.69
446 454 1.357991 GAAGCAAGCAGACGAGAGGC 61.358 60.000 0.00 0.00 42.06 4.70
447 455 2.794820 AAGCAAGCAGACGAGAGGCC 62.795 60.000 0.00 0.00 43.69 5.19
448 456 2.507992 CAAGCAGACGAGAGGCCG 60.508 66.667 0.00 0.00 43.69 6.13
449 457 2.992114 AAGCAGACGAGAGGCCGT 60.992 61.111 0.00 0.00 43.69 5.68
450 458 2.574955 AAGCAGACGAGAGGCCGTT 61.575 57.895 0.00 0.00 43.69 4.44
451 459 2.048127 GCAGACGAGAGGCCGTTT 60.048 61.111 0.00 0.00 43.69 3.60
452 460 2.383527 GCAGACGAGAGGCCGTTTG 61.384 63.158 0.00 0.00 43.69 2.93
453 461 2.048127 AGACGAGAGGCCGTTTGC 60.048 61.111 0.00 0.00 43.69 3.68
466 474 2.670905 GCCGTTTGCCATGATTTTAACC 59.329 45.455 0.00 0.00 0.00 2.85
467 475 3.616317 GCCGTTTGCCATGATTTTAACCT 60.616 43.478 0.00 0.00 0.00 3.50
469 477 4.173256 CGTTTGCCATGATTTTAACCTCC 58.827 43.478 0.00 0.00 0.00 4.30
470 478 4.321601 CGTTTGCCATGATTTTAACCTCCA 60.322 41.667 0.00 0.00 0.00 3.86
472 480 5.815233 TTGCCATGATTTTAACCTCCAAA 57.185 34.783 0.00 0.00 0.00 3.28
473 481 5.815233 TGCCATGATTTTAACCTCCAAAA 57.185 34.783 0.00 0.00 0.00 2.44
474 482 5.792741 TGCCATGATTTTAACCTCCAAAAG 58.207 37.500 0.00 0.00 0.00 2.27
475 483 5.541868 TGCCATGATTTTAACCTCCAAAAGA 59.458 36.000 0.00 0.00 0.00 2.52
476 484 6.042552 TGCCATGATTTTAACCTCCAAAAGAA 59.957 34.615 0.00 0.00 0.00 2.52
478 486 6.586082 CCATGATTTTAACCTCCAAAAGAACG 59.414 38.462 0.00 0.00 0.00 3.95
479 487 6.079424 TGATTTTAACCTCCAAAAGAACGG 57.921 37.500 0.00 0.00 0.00 4.44
480 488 5.828859 TGATTTTAACCTCCAAAAGAACGGA 59.171 36.000 0.00 0.00 0.00 4.69
481 489 6.321690 TGATTTTAACCTCCAAAAGAACGGAA 59.678 34.615 0.00 0.00 0.00 4.30
482 490 5.503662 TTTAACCTCCAAAAGAACGGAAC 57.496 39.130 0.00 0.00 0.00 3.62
485 493 1.477923 CCTCCAAAAGAACGGAACCCA 60.478 52.381 0.00 0.00 0.00 4.51
487 495 2.890945 CTCCAAAAGAACGGAACCCATT 59.109 45.455 0.00 0.00 0.00 3.16
488 496 4.076394 CTCCAAAAGAACGGAACCCATTA 58.924 43.478 0.00 0.00 0.00 1.90
490 498 3.057104 CCAAAAGAACGGAACCCATTACC 60.057 47.826 0.00 0.00 0.00 2.85
497 505 2.052782 GGAACCCATTACCGAGCAAT 57.947 50.000 0.00 0.00 0.00 3.56
499 507 2.421529 GGAACCCATTACCGAGCAATCT 60.422 50.000 0.00 0.00 0.00 2.40
501 509 2.119495 ACCCATTACCGAGCAATCTCT 58.881 47.619 0.00 0.00 37.19 3.10
503 511 2.487934 CCATTACCGAGCAATCTCTGG 58.512 52.381 0.00 0.00 38.27 3.86
504 512 2.103094 CCATTACCGAGCAATCTCTGGA 59.897 50.000 9.10 0.00 36.87 3.86
505 513 3.388308 CATTACCGAGCAATCTCTGGAG 58.612 50.000 9.10 0.00 36.87 3.86
507 515 0.324738 ACCGAGCAATCTCTGGAGGA 60.325 55.000 9.10 0.00 36.87 3.71
508 516 0.826715 CCGAGCAATCTCTGGAGGAA 59.173 55.000 0.00 0.00 37.19 3.36
510 518 1.753649 CGAGCAATCTCTGGAGGAAGA 59.246 52.381 0.00 0.00 37.19 2.87
513 521 1.478510 GCAATCTCTGGAGGAAGACGA 59.521 52.381 0.00 0.00 0.00 4.20
514 522 2.093973 GCAATCTCTGGAGGAAGACGAA 60.094 50.000 0.00 0.00 0.00 3.85
515 523 3.617531 GCAATCTCTGGAGGAAGACGAAA 60.618 47.826 0.00 0.00 0.00 3.46
516 524 4.180057 CAATCTCTGGAGGAAGACGAAAG 58.820 47.826 0.00 0.00 0.00 2.62
517 525 3.156288 TCTCTGGAGGAAGACGAAAGA 57.844 47.619 0.00 0.00 0.00 2.52
518 526 2.820787 TCTCTGGAGGAAGACGAAAGAC 59.179 50.000 0.00 0.00 0.00 3.01
520 528 0.038526 TGGAGGAAGACGAAAGACGC 60.039 55.000 0.00 0.00 46.94 5.19
521 529 0.244178 GGAGGAAGACGAAAGACGCT 59.756 55.000 0.00 0.00 46.94 5.07
522 530 1.341606 GAGGAAGACGAAAGACGCTG 58.658 55.000 0.00 0.00 46.94 5.18
524 532 0.944311 GGAAGACGAAAGACGCTGCA 60.944 55.000 0.00 0.00 46.94 4.41
525 533 1.071605 GAAGACGAAAGACGCTGCAT 58.928 50.000 0.00 0.00 46.94 3.96
527 535 0.038251 AGACGAAAGACGCTGCATCA 60.038 50.000 0.00 0.00 46.94 3.07
531 539 0.790207 GAAAGACGCTGCATCACGAA 59.210 50.000 10.43 0.00 0.00 3.85
532 540 0.792640 AAAGACGCTGCATCACGAAG 59.207 50.000 10.43 0.00 0.00 3.79
533 541 0.038251 AAGACGCTGCATCACGAAGA 60.038 50.000 10.43 0.00 0.00 2.87
534 542 0.457509 AGACGCTGCATCACGAAGAG 60.458 55.000 10.43 0.00 0.00 2.85
535 543 1.416813 GACGCTGCATCACGAAGAGG 61.417 60.000 10.43 0.00 0.00 3.69
541 549 2.845019 CATCACGAAGAGGCAAGCA 58.155 52.632 0.00 0.00 0.00 3.91
542 550 0.725686 CATCACGAAGAGGCAAGCAG 59.274 55.000 0.00 0.00 0.00 4.24
543 551 0.322975 ATCACGAAGAGGCAAGCAGT 59.677 50.000 0.00 0.00 0.00 4.40
544 552 0.601046 TCACGAAGAGGCAAGCAGTG 60.601 55.000 0.00 0.00 0.00 3.66
545 553 0.882042 CACGAAGAGGCAAGCAGTGT 60.882 55.000 0.00 0.00 0.00 3.55
547 555 0.236711 CGAAGAGGCAAGCAGTGTTG 59.763 55.000 0.00 0.00 0.00 3.33
548 556 1.597742 GAAGAGGCAAGCAGTGTTGA 58.402 50.000 8.92 0.00 0.00 3.18
550 558 1.602311 AGAGGCAAGCAGTGTTGAAG 58.398 50.000 8.92 0.00 0.00 3.02
551 559 0.595095 GAGGCAAGCAGTGTTGAAGG 59.405 55.000 8.92 0.00 0.00 3.46
552 560 0.183492 AGGCAAGCAGTGTTGAAGGA 59.817 50.000 8.92 0.00 0.00 3.36
553 561 0.595095 GGCAAGCAGTGTTGAAGGAG 59.405 55.000 8.92 0.00 0.00 3.69
554 562 1.597742 GCAAGCAGTGTTGAAGGAGA 58.402 50.000 8.92 0.00 0.00 3.71
555 563 1.265365 GCAAGCAGTGTTGAAGGAGAC 59.735 52.381 8.92 0.00 0.00 3.36
556 564 2.564771 CAAGCAGTGTTGAAGGAGACA 58.435 47.619 0.00 0.00 0.00 3.41
557 565 3.144506 CAAGCAGTGTTGAAGGAGACAT 58.855 45.455 0.00 0.00 0.00 3.06
558 566 3.498774 AGCAGTGTTGAAGGAGACATT 57.501 42.857 0.00 0.00 0.00 2.71
559 567 3.144506 AGCAGTGTTGAAGGAGACATTG 58.855 45.455 0.00 0.00 36.80 2.82
560 568 2.227388 GCAGTGTTGAAGGAGACATTGG 59.773 50.000 0.00 0.00 35.01 3.16
561 569 3.743521 CAGTGTTGAAGGAGACATTGGA 58.256 45.455 0.00 0.00 32.02 3.53
562 570 3.750130 CAGTGTTGAAGGAGACATTGGAG 59.250 47.826 0.00 0.00 32.02 3.86
563 571 3.648067 AGTGTTGAAGGAGACATTGGAGA 59.352 43.478 0.00 0.00 0.00 3.71
564 572 4.103153 AGTGTTGAAGGAGACATTGGAGAA 59.897 41.667 0.00 0.00 0.00 2.87
565 573 4.453819 GTGTTGAAGGAGACATTGGAGAAG 59.546 45.833 0.00 0.00 0.00 2.85
566 574 3.340814 TGAAGGAGACATTGGAGAAGC 57.659 47.619 0.00 0.00 0.00 3.86
569 577 0.915364 GGAGACATTGGAGAAGCCCT 59.085 55.000 0.00 0.00 34.97 5.19
570 578 1.134250 GGAGACATTGGAGAAGCCCTC 60.134 57.143 0.00 0.00 41.22 4.30
577 585 4.668151 GAGAAGCCCTCCTCTCGA 57.332 61.111 0.00 0.00 35.87 4.04
578 586 2.414750 GAGAAGCCCTCCTCTCGAG 58.585 63.158 5.93 5.93 38.46 4.04
589 597 0.820226 CCTCTCGAGGCAAGATGACA 59.180 55.000 13.56 0.00 42.44 3.58
590 598 1.202394 CCTCTCGAGGCAAGATGACAG 60.202 57.143 13.56 0.00 42.44 3.51
614 696 4.492160 CGAGCGCCGTAGCCTCAA 62.492 66.667 2.29 0.00 38.01 3.02
615 697 2.886124 GAGCGCCGTAGCCTCAAC 60.886 66.667 2.29 0.00 38.01 3.18
616 698 4.452733 AGCGCCGTAGCCTCAACC 62.453 66.667 2.29 0.00 38.01 3.77
617 699 4.752879 GCGCCGTAGCCTCAACCA 62.753 66.667 0.00 0.00 34.57 3.67
619 701 2.663196 GCCGTAGCCTCAACCAGT 59.337 61.111 0.00 0.00 0.00 4.00
620 702 1.003718 GCCGTAGCCTCAACCAGTT 60.004 57.895 0.00 0.00 0.00 3.16
621 703 1.019805 GCCGTAGCCTCAACCAGTTC 61.020 60.000 0.00 0.00 0.00 3.01
622 704 0.320374 CCGTAGCCTCAACCAGTTCA 59.680 55.000 0.00 0.00 0.00 3.18
623 705 1.673033 CCGTAGCCTCAACCAGTTCAG 60.673 57.143 0.00 0.00 0.00 3.02
624 706 1.673033 CGTAGCCTCAACCAGTTCAGG 60.673 57.143 0.00 0.00 0.00 3.86
626 708 0.689623 AGCCTCAACCAGTTCAGGAG 59.310 55.000 4.44 0.00 0.00 3.69
627 709 0.687354 GCCTCAACCAGTTCAGGAGA 59.313 55.000 4.44 0.00 0.00 3.71
629 711 1.002544 CCTCAACCAGTTCAGGAGACC 59.997 57.143 0.00 0.00 0.00 3.85
631 713 0.393077 CAACCAGTTCAGGAGACCGT 59.607 55.000 0.00 0.00 0.00 4.83
632 714 0.393077 AACCAGTTCAGGAGACCGTG 59.607 55.000 0.00 0.00 0.00 4.94
633 715 1.374758 CCAGTTCAGGAGACCGTGC 60.375 63.158 0.00 0.00 0.00 5.34
634 716 1.734477 CAGTTCAGGAGACCGTGCG 60.734 63.158 0.00 0.00 0.00 5.34
635 717 3.112709 GTTCAGGAGACCGTGCGC 61.113 66.667 0.00 0.00 0.00 6.09
636 718 4.373116 TTCAGGAGACCGTGCGCC 62.373 66.667 4.18 0.00 0.00 6.53
641 723 2.975799 GAGACCGTGCGCCCAAAA 60.976 61.111 4.18 0.00 0.00 2.44
642 724 2.282180 AGACCGTGCGCCCAAAAT 60.282 55.556 4.18 0.00 0.00 1.82
643 725 1.003112 AGACCGTGCGCCCAAAATA 60.003 52.632 4.18 0.00 0.00 1.40
644 726 1.024579 AGACCGTGCGCCCAAAATAG 61.025 55.000 4.18 0.00 0.00 1.73
658 1301 3.814283 CCAAAATAGGCTCAGATGCTCTC 59.186 47.826 0.00 0.00 0.00 3.20
659 1302 4.449131 CAAAATAGGCTCAGATGCTCTCA 58.551 43.478 0.00 0.00 0.00 3.27
666 1309 3.069300 GGCTCAGATGCTCTCATACTTGA 59.931 47.826 0.00 0.00 31.96 3.02
726 1377 1.560505 AAAGGGGTGGAATCACATGC 58.439 50.000 0.00 0.00 45.32 4.06
740 1391 4.952262 TCACATGCATTCTTAGTTCTGC 57.048 40.909 0.00 0.00 35.21 4.26
747 1398 3.240861 GCATTCTTAGTTCTGCGTCTACG 59.759 47.826 0.00 0.00 43.27 3.51
768 1457 3.668757 CGTCCAAGCATCTTGACATGTTG 60.669 47.826 0.00 0.00 0.00 3.33
796 1485 8.686334 TGCCTACAATGAAATTCCTCTAAAATC 58.314 33.333 0.00 0.00 31.22 2.17
813 1502 3.417069 AATCCGTCCATGTCAAACAGA 57.583 42.857 0.00 0.00 0.00 3.41
816 1505 0.798776 CGTCCATGTCAAACAGAGCC 59.201 55.000 0.00 0.00 0.00 4.70
827 1516 3.807622 TCAAACAGAGCCTCGTTGTTTAG 59.192 43.478 10.63 7.02 41.60 1.85
831 1520 1.066787 AGAGCCTCGTTGTTTAGAGCC 60.067 52.381 0.00 0.00 33.39 4.70
832 1521 0.036294 AGCCTCGTTGTTTAGAGCCC 60.036 55.000 0.00 0.00 33.39 5.19
833 1522 1.025113 GCCTCGTTGTTTAGAGCCCC 61.025 60.000 0.00 0.00 33.39 5.80
834 1523 0.613777 CCTCGTTGTTTAGAGCCCCT 59.386 55.000 0.00 0.00 33.39 4.79
836 1525 2.235402 CCTCGTTGTTTAGAGCCCCTAA 59.765 50.000 0.00 0.00 35.66 2.69
837 1526 3.118371 CCTCGTTGTTTAGAGCCCCTAAT 60.118 47.826 0.00 0.00 37.22 1.73
842 1566 5.437946 GTTGTTTAGAGCCCCTAATAAGCT 58.562 41.667 0.00 0.00 37.22 3.74
850 1574 3.391626 AGCCCCTAATAAGCTAGTTCACC 59.608 47.826 0.00 0.00 34.38 4.02
887 1617 5.520288 TGCTAATGCTCTGACTTCGAATTAC 59.480 40.000 0.00 0.00 40.48 1.89
913 1646 6.352516 AGTTTTTCAAGATGCGATCTAGGAT 58.647 36.000 0.00 0.00 39.08 3.24
919 1652 7.055667 TCAAGATGCGATCTAGGATAAGTTT 57.944 36.000 0.00 0.00 39.08 2.66
927 1660 7.042725 TGCGATCTAGGATAAGTTTTTGAATCG 60.043 37.037 0.00 0.00 0.00 3.34
928 1661 7.569591 GCGATCTAGGATAAGTTTTTGAATCGG 60.570 40.741 0.00 0.00 0.00 4.18
931 1664 9.681062 ATCTAGGATAAGTTTTTGAATCGGAAA 57.319 29.630 0.00 0.00 0.00 3.13
934 1667 8.812147 AGGATAAGTTTTTGAATCGGAAAAAC 57.188 30.769 11.43 11.43 46.62 2.43
938 1675 5.710613 GTTTTTGAATCGGAAAAACAGCA 57.289 34.783 13.42 0.00 46.00 4.41
993 1730 0.818296 CCGACGACTTTCCTCCATCT 59.182 55.000 0.00 0.00 0.00 2.90
1090 1827 2.859165 AACCAATCAGACCATGTCGT 57.141 45.000 0.00 0.00 37.67 4.34
1232 1978 2.740055 CGCGAACTGCCTCTGCTT 60.740 61.111 0.00 0.00 42.08 3.91
1377 2141 3.423162 CTTCGAGCGGCTCCTCCTG 62.423 68.421 23.36 9.72 0.00 3.86
1538 2308 0.826715 CAGACATCCCACGAGACCAT 59.173 55.000 0.00 0.00 0.00 3.55
1677 2447 2.812499 CAGTACTATGGCCGCGGT 59.188 61.111 28.70 9.89 0.00 5.68
1840 2610 1.466025 TAACAAGCCGTCGTCCCACT 61.466 55.000 0.00 0.00 0.00 4.00
1950 2720 3.443045 GGGCTCGTGTGGGCAATG 61.443 66.667 0.00 0.00 0.00 2.82
1951 2721 2.672996 GGCTCGTGTGGGCAATGT 60.673 61.111 0.00 0.00 0.00 2.71
1953 2723 2.260869 GCTCGTGTGGGCAATGTGT 61.261 57.895 0.00 0.00 0.00 3.72
1954 2724 0.953471 GCTCGTGTGGGCAATGTGTA 60.953 55.000 0.00 0.00 0.00 2.90
1956 2726 1.876799 CTCGTGTGGGCAATGTGTAAA 59.123 47.619 0.00 0.00 0.00 2.01
1957 2727 1.604755 TCGTGTGGGCAATGTGTAAAC 59.395 47.619 0.00 0.00 0.00 2.01
1958 2728 1.661743 CGTGTGGGCAATGTGTAAACG 60.662 52.381 0.00 0.00 0.00 3.60
1959 2729 0.312416 TGTGGGCAATGTGTAAACGC 59.688 50.000 0.00 0.00 0.00 4.84
1960 2730 0.388006 GTGGGCAATGTGTAAACGCC 60.388 55.000 0.00 0.00 42.21 5.68
1985 2755 4.976987 CACGTGTGGGTGTTAATATTTCC 58.023 43.478 7.58 0.00 33.24 3.13
1986 2756 3.685756 ACGTGTGGGTGTTAATATTTCCG 59.314 43.478 0.00 0.00 0.00 4.30
2052 3043 4.487714 TCCAGGACTTATCATGTTGGAC 57.512 45.455 0.00 0.00 34.74 4.02
2055 3046 4.080919 CCAGGACTTATCATGTTGGACTCA 60.081 45.833 0.00 0.00 34.74 3.41
2072 3063 2.838202 ACTCAACCATCTCCAACCGTAT 59.162 45.455 0.00 0.00 0.00 3.06
2087 3078 9.658799 CTCCAACCGTATAAATCATCATTATCT 57.341 33.333 0.00 0.00 0.00 1.98
2130 3121 0.883814 GGGGAGCATCTTCATCTGCG 60.884 60.000 0.00 0.00 43.17 5.18
2131 3122 0.883814 GGGAGCATCTTCATCTGCGG 60.884 60.000 0.00 0.00 43.17 5.69
2133 3124 1.829349 GAGCATCTTCATCTGCGGCG 61.829 60.000 0.51 0.51 43.17 6.46
2162 3154 4.879545 ACAAACAACACCGTCTACATCTTT 59.120 37.500 0.00 0.00 0.00 2.52
2170 3162 6.100004 ACACCGTCTACATCTTTAATGTCAG 58.900 40.000 0.00 0.00 33.76 3.51
2176 3168 4.255510 ACATCTTTAATGTCAGCCCCAT 57.744 40.909 0.00 0.00 0.00 4.00
2177 3169 3.956199 ACATCTTTAATGTCAGCCCCATG 59.044 43.478 0.00 0.00 0.00 3.66
2178 3170 3.737559 TCTTTAATGTCAGCCCCATGT 57.262 42.857 0.00 0.00 0.00 3.21
2179 3171 3.355378 TCTTTAATGTCAGCCCCATGTG 58.645 45.455 0.00 0.00 0.00 3.21
2180 3172 2.897271 TTAATGTCAGCCCCATGTGT 57.103 45.000 0.00 0.00 0.00 3.72
2181 3173 2.897271 TAATGTCAGCCCCATGTGTT 57.103 45.000 0.00 0.00 0.00 3.32
2182 3174 1.259609 AATGTCAGCCCCATGTGTTG 58.740 50.000 0.00 0.00 0.00 3.33
2183 3175 0.612732 ATGTCAGCCCCATGTGTTGG 60.613 55.000 0.00 0.00 46.00 3.77
2184 3176 1.228552 GTCAGCCCCATGTGTTGGT 60.229 57.895 0.00 0.00 44.83 3.67
2185 3177 0.827507 GTCAGCCCCATGTGTTGGTT 60.828 55.000 0.00 0.00 44.83 3.67
2186 3178 0.105760 TCAGCCCCATGTGTTGGTTT 60.106 50.000 0.00 0.00 44.83 3.27
2187 3179 0.758123 CAGCCCCATGTGTTGGTTTT 59.242 50.000 0.00 0.00 44.83 2.43
2188 3180 1.140652 CAGCCCCATGTGTTGGTTTTT 59.859 47.619 0.00 0.00 44.83 1.94
2268 3260 6.778821 TGGTATGAGATCCAAACTTTCAGAA 58.221 36.000 0.00 0.00 0.00 3.02
2294 3286 8.502105 TGCTATTCATATTCATATGCTTCCAG 57.498 34.615 0.00 0.00 39.90 3.86
2304 3296 5.059161 TCATATGCTTCCAGACATGCTTAC 58.941 41.667 0.00 0.00 0.00 2.34
2317 3309 0.531753 TGCTTACGCTGTGACTTGCA 60.532 50.000 0.00 0.00 36.97 4.08
2340 3339 9.719355 TGCAAGTAGTTCATTACATTCTTAAGA 57.281 29.630 0.00 0.00 0.00 2.10
2416 3422 1.762957 ACTTATGCCTGCCTACGATGT 59.237 47.619 0.00 0.00 0.00 3.06
2421 3427 1.299468 CCTGCCTACGATGTCGCTC 60.299 63.158 1.77 0.00 44.43 5.03
2431 3437 1.531578 CGATGTCGCTCTATTCGAGGA 59.468 52.381 0.00 0.00 40.25 3.71
2438 3444 5.704053 TGTCGCTCTATTCGAGGATTGTATA 59.296 40.000 0.00 0.00 40.25 1.47
2440 3446 6.908284 GTCGCTCTATTCGAGGATTGTATATC 59.092 42.308 0.00 0.00 40.25 1.63
2537 3544 0.899717 TTCTTGGTGCATTGGGGCTC 60.900 55.000 0.00 0.00 34.04 4.70
2543 3550 3.743017 GCATTGGGGCTCTGGGGA 61.743 66.667 0.00 0.00 0.00 4.81
2546 3553 1.309013 ATTGGGGCTCTGGGGATCA 60.309 57.895 0.00 0.00 0.00 2.92
2547 3554 1.358830 ATTGGGGCTCTGGGGATCAG 61.359 60.000 0.00 0.00 44.68 2.90
2598 3606 3.257127 GCATGTTTAGGTTGTTTGGGCTA 59.743 43.478 0.00 0.00 0.00 3.93
2607 3615 3.192633 GGTTGTTTGGGCTATTCGTCATT 59.807 43.478 0.00 0.00 0.00 2.57
2608 3616 4.412207 GTTGTTTGGGCTATTCGTCATTC 58.588 43.478 0.00 0.00 0.00 2.67
2615 3623 3.430929 GGGCTATTCGTCATTCTGTCTGT 60.431 47.826 0.00 0.00 0.00 3.41
2631 3639 3.762288 TGTCTGTAGCTCCTAATTGACGT 59.238 43.478 0.00 0.00 0.00 4.34
2664 3672 0.950555 TAACGAGCTGGCACTTGCAG 60.951 55.000 3.15 0.39 44.36 4.41
2740 3748 2.585247 CTAACGGCCGCTACTGCC 60.585 66.667 28.58 0.00 45.70 4.85
2895 3931 7.520119 AAGAAATTTCACCAACTTCGAAAAC 57.480 32.000 19.99 0.00 32.76 2.43
2898 3934 6.641176 AATTTCACCAACTTCGAAAACAAC 57.359 33.333 0.00 0.00 32.76 3.32
2915 3954 9.432077 CGAAAACAACCAATGATTTTAAAAAGG 57.568 29.630 4.44 5.21 34.53 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
154 155 8.441312 AGAAAAGTGTCGTTTCTAACCAAATA 57.559 30.769 8.40 0.00 42.22 1.40
155 156 7.329588 AGAAAAGTGTCGTTTCTAACCAAAT 57.670 32.000 8.40 0.00 42.22 2.32
158 159 4.505191 CGAGAAAAGTGTCGTTTCTAACCA 59.495 41.667 9.72 0.00 43.65 3.67
184 192 7.200434 ACTCTTTGGAGGAGCATATTTTCTA 57.800 36.000 0.00 0.00 43.46 2.10
187 195 6.963322 AGTACTCTTTGGAGGAGCATATTTT 58.037 36.000 0.00 0.00 43.46 1.82
194 202 3.591023 GTTGAGTACTCTTTGGAGGAGC 58.409 50.000 23.01 0.00 43.46 4.70
207 215 9.668497 AATTTAGAGGAGTAAATGGTTGAGTAC 57.332 33.333 0.00 0.00 33.71 2.73
266 274 6.445357 AAAGGCTGACGTTCTTTCTAAAAA 57.555 33.333 0.00 0.00 0.00 1.94
268 276 7.739498 AATAAAGGCTGACGTTCTTTCTAAA 57.261 32.000 9.32 0.00 33.44 1.85
269 277 8.836268 TTAATAAAGGCTGACGTTCTTTCTAA 57.164 30.769 9.32 7.27 33.44 2.10
274 282 8.182227 GCTTAATTAATAAAGGCTGACGTTCTT 58.818 33.333 0.00 0.00 0.00 2.52
275 283 7.335924 TGCTTAATTAATAAAGGCTGACGTTCT 59.664 33.333 0.00 0.00 0.00 3.01
276 284 7.469260 TGCTTAATTAATAAAGGCTGACGTTC 58.531 34.615 0.00 0.00 0.00 3.95
277 285 7.385778 TGCTTAATTAATAAAGGCTGACGTT 57.614 32.000 0.00 0.00 0.00 3.99
278 286 6.995511 TGCTTAATTAATAAAGGCTGACGT 57.004 33.333 0.00 0.00 0.00 4.34
279 287 7.247728 TGTTGCTTAATTAATAAAGGCTGACG 58.752 34.615 0.00 0.00 0.00 4.35
280 288 8.980143 TTGTTGCTTAATTAATAAAGGCTGAC 57.020 30.769 0.00 3.36 0.00 3.51
281 289 9.418045 GTTTGTTGCTTAATTAATAAAGGCTGA 57.582 29.630 0.00 0.00 0.00 4.26
282 290 9.423061 AGTTTGTTGCTTAATTAATAAAGGCTG 57.577 29.630 0.00 0.00 0.00 4.85
283 291 9.996554 AAGTTTGTTGCTTAATTAATAAAGGCT 57.003 25.926 0.00 0.00 0.00 4.58
291 299 9.944663 CTCTGTGTAAGTTTGTTGCTTAATTAA 57.055 29.630 0.00 0.00 31.22 1.40
293 301 7.996385 ACTCTGTGTAAGTTTGTTGCTTAATT 58.004 30.769 0.00 0.00 31.22 1.40
295 303 6.821665 AGACTCTGTGTAAGTTTGTTGCTTAA 59.178 34.615 0.00 0.00 31.22 1.85
299 307 5.485662 AAGACTCTGTGTAAGTTTGTTGC 57.514 39.130 0.00 0.00 0.00 4.17
301 309 4.809426 CGGAAGACTCTGTGTAAGTTTGTT 59.191 41.667 0.00 0.00 0.00 2.83
302 310 4.369182 CGGAAGACTCTGTGTAAGTTTGT 58.631 43.478 0.00 0.00 0.00 2.83
303 311 3.741344 CCGGAAGACTCTGTGTAAGTTTG 59.259 47.826 0.00 0.00 0.00 2.93
304 312 3.640029 TCCGGAAGACTCTGTGTAAGTTT 59.360 43.478 0.00 0.00 0.00 2.66
306 314 2.872732 TCCGGAAGACTCTGTGTAAGT 58.127 47.619 0.00 0.00 0.00 2.24
307 315 3.775202 CATCCGGAAGACTCTGTGTAAG 58.225 50.000 9.01 0.00 0.00 2.34
308 316 2.094182 GCATCCGGAAGACTCTGTGTAA 60.094 50.000 9.01 0.00 0.00 2.41
310 318 0.247736 GCATCCGGAAGACTCTGTGT 59.752 55.000 9.01 0.00 0.00 3.72
311 319 0.247460 TGCATCCGGAAGACTCTGTG 59.753 55.000 9.01 0.00 0.00 3.66
312 320 0.976641 TTGCATCCGGAAGACTCTGT 59.023 50.000 9.01 0.00 0.00 3.41
313 321 2.208431 GATTGCATCCGGAAGACTCTG 58.792 52.381 9.01 1.22 0.00 3.35
314 322 1.139853 GGATTGCATCCGGAAGACTCT 59.860 52.381 9.01 0.00 40.13 3.24
315 323 1.587547 GGATTGCATCCGGAAGACTC 58.412 55.000 9.01 1.44 40.13 3.36
316 324 3.788672 GGATTGCATCCGGAAGACT 57.211 52.632 9.01 0.00 40.13 3.24
326 334 0.035152 TGTTCTGCTCCGGATTGCAT 60.035 50.000 17.78 0.00 38.59 3.96
327 335 0.674581 CTGTTCTGCTCCGGATTGCA 60.675 55.000 16.68 16.68 37.63 4.08
328 336 0.391661 TCTGTTCTGCTCCGGATTGC 60.392 55.000 3.57 6.69 0.00 3.56
330 338 2.859165 TTTCTGTTCTGCTCCGGATT 57.141 45.000 3.57 0.00 0.00 3.01
331 339 2.859165 TTTTCTGTTCTGCTCCGGAT 57.141 45.000 3.57 0.00 0.00 4.18
334 342 5.179368 TCTTTGTATTTTCTGTTCTGCTCCG 59.821 40.000 0.00 0.00 0.00 4.63
335 343 6.205658 AGTCTTTGTATTTTCTGTTCTGCTCC 59.794 38.462 0.00 0.00 0.00 4.70
336 344 7.195839 AGTCTTTGTATTTTCTGTTCTGCTC 57.804 36.000 0.00 0.00 0.00 4.26
337 345 7.389053 CCTAGTCTTTGTATTTTCTGTTCTGCT 59.611 37.037 0.00 0.00 0.00 4.24
339 347 8.833231 TCCTAGTCTTTGTATTTTCTGTTCTG 57.167 34.615 0.00 0.00 0.00 3.02
340 348 8.871125 TCTCCTAGTCTTTGTATTTTCTGTTCT 58.129 33.333 0.00 0.00 0.00 3.01
341 349 9.145865 CTCTCCTAGTCTTTGTATTTTCTGTTC 57.854 37.037 0.00 0.00 0.00 3.18
342 350 8.652290 ACTCTCCTAGTCTTTGTATTTTCTGTT 58.348 33.333 0.00 0.00 30.33 3.16
343 351 8.196378 ACTCTCCTAGTCTTTGTATTTTCTGT 57.804 34.615 0.00 0.00 30.33 3.41
346 354 9.490379 TTGAACTCTCCTAGTCTTTGTATTTTC 57.510 33.333 0.00 0.00 37.50 2.29
348 356 9.274206 GTTTGAACTCTCCTAGTCTTTGTATTT 57.726 33.333 0.00 0.00 37.50 1.40
349 357 8.652290 AGTTTGAACTCTCCTAGTCTTTGTATT 58.348 33.333 0.00 0.00 37.50 1.89
350 358 8.196378 AGTTTGAACTCTCCTAGTCTTTGTAT 57.804 34.615 0.00 0.00 37.50 2.29
351 359 7.598759 AGTTTGAACTCTCCTAGTCTTTGTA 57.401 36.000 0.00 0.00 37.50 2.41
352 360 6.487299 AGTTTGAACTCTCCTAGTCTTTGT 57.513 37.500 0.00 0.00 37.50 2.83
353 361 7.887381 TCTAGTTTGAACTCTCCTAGTCTTTG 58.113 38.462 0.00 0.00 37.50 2.77
354 362 8.658840 ATCTAGTTTGAACTCTCCTAGTCTTT 57.341 34.615 0.00 0.00 37.50 2.52
355 363 8.113462 AGATCTAGTTTGAACTCTCCTAGTCTT 58.887 37.037 0.00 0.00 37.50 3.01
356 364 7.639378 AGATCTAGTTTGAACTCTCCTAGTCT 58.361 38.462 0.00 0.00 37.50 3.24
357 365 7.875327 AGATCTAGTTTGAACTCTCCTAGTC 57.125 40.000 0.00 0.00 37.50 2.59
358 366 7.501225 GCTAGATCTAGTTTGAACTCTCCTAGT 59.499 40.741 26.73 0.00 40.37 2.57
359 367 7.719633 AGCTAGATCTAGTTTGAACTCTCCTAG 59.280 40.741 26.73 8.29 40.37 3.02
360 368 7.579105 AGCTAGATCTAGTTTGAACTCTCCTA 58.421 38.462 26.73 0.00 40.37 2.94
361 369 6.431722 AGCTAGATCTAGTTTGAACTCTCCT 58.568 40.000 26.73 10.87 40.37 3.69
364 372 7.579105 TCCTAGCTAGATCTAGTTTGAACTCT 58.421 38.462 26.73 16.33 40.37 3.24
365 373 7.811117 TCCTAGCTAGATCTAGTTTGAACTC 57.189 40.000 26.73 10.70 40.37 3.01
369 377 9.679661 CTCATATCCTAGCTAGATCTAGTTTGA 57.320 37.037 26.73 20.66 35.43 2.69
370 378 8.405531 GCTCATATCCTAGCTAGATCTAGTTTG 58.594 40.741 26.73 21.69 35.43 2.93
371 379 8.519799 GCTCATATCCTAGCTAGATCTAGTTT 57.480 38.462 26.73 18.76 35.43 2.66
383 391 7.757624 GTGTAATGTTCTAGCTCATATCCTAGC 59.242 40.741 0.00 0.00 39.08 3.42
384 392 9.019656 AGTGTAATGTTCTAGCTCATATCCTAG 57.980 37.037 0.00 0.00 33.88 3.02
385 393 8.797438 CAGTGTAATGTTCTAGCTCATATCCTA 58.203 37.037 0.00 0.00 0.00 2.94
386 394 7.288852 ACAGTGTAATGTTCTAGCTCATATCCT 59.711 37.037 0.00 0.00 0.00 3.24
387 395 7.437748 ACAGTGTAATGTTCTAGCTCATATCC 58.562 38.462 0.00 0.00 0.00 2.59
388 396 7.324856 CGACAGTGTAATGTTCTAGCTCATATC 59.675 40.741 0.00 0.00 32.25 1.63
389 397 7.013369 TCGACAGTGTAATGTTCTAGCTCATAT 59.987 37.037 0.00 0.00 32.25 1.78
390 398 6.317893 TCGACAGTGTAATGTTCTAGCTCATA 59.682 38.462 0.00 0.00 32.25 2.15
391 399 5.125578 TCGACAGTGTAATGTTCTAGCTCAT 59.874 40.000 0.00 0.00 32.25 2.90
392 400 4.457949 TCGACAGTGTAATGTTCTAGCTCA 59.542 41.667 0.00 0.00 32.25 4.26
393 401 4.982999 TCGACAGTGTAATGTTCTAGCTC 58.017 43.478 0.00 0.00 32.25 4.09
394 402 5.125578 TCATCGACAGTGTAATGTTCTAGCT 59.874 40.000 14.56 0.00 32.25 3.32
395 403 5.340803 TCATCGACAGTGTAATGTTCTAGC 58.659 41.667 14.56 0.00 32.25 3.42
398 406 5.538118 TGTTCATCGACAGTGTAATGTTCT 58.462 37.500 14.56 0.00 32.25 3.01
401 409 4.093408 GCATGTTCATCGACAGTGTAATGT 59.907 41.667 14.56 0.00 35.68 2.71
402 410 4.330894 AGCATGTTCATCGACAGTGTAATG 59.669 41.667 10.52 10.52 32.19 1.90
403 411 4.330894 CAGCATGTTCATCGACAGTGTAAT 59.669 41.667 0.00 0.00 32.19 1.89
404 412 3.679502 CAGCATGTTCATCGACAGTGTAA 59.320 43.478 0.00 0.00 32.19 2.41
406 414 2.071540 CAGCATGTTCATCGACAGTGT 58.928 47.619 0.00 0.00 32.19 3.55
407 415 1.395954 CCAGCATGTTCATCGACAGTG 59.604 52.381 0.00 0.00 32.19 3.66
408 416 1.276138 TCCAGCATGTTCATCGACAGT 59.724 47.619 0.00 0.00 32.19 3.55
410 418 2.349590 CTTCCAGCATGTTCATCGACA 58.650 47.619 0.00 0.00 0.00 4.35
411 419 1.063174 GCTTCCAGCATGTTCATCGAC 59.937 52.381 0.00 0.00 41.89 4.20
413 421 3.911989 GCTTCCAGCATGTTCATCG 57.088 52.632 0.00 0.00 41.89 3.84
423 431 1.633852 CTCGTCTGCTTGCTTCCAGC 61.634 60.000 0.00 0.00 42.82 4.85
425 433 0.037882 CTCTCGTCTGCTTGCTTCCA 60.038 55.000 0.00 0.00 0.00 3.53
426 434 0.739112 CCTCTCGTCTGCTTGCTTCC 60.739 60.000 0.00 0.00 0.00 3.46
427 435 1.357991 GCCTCTCGTCTGCTTGCTTC 61.358 60.000 0.00 0.00 0.00 3.86
428 436 1.375268 GCCTCTCGTCTGCTTGCTT 60.375 57.895 0.00 0.00 0.00 3.91
429 437 2.264166 GCCTCTCGTCTGCTTGCT 59.736 61.111 0.00 0.00 0.00 3.91
431 439 2.507992 CGGCCTCTCGTCTGCTTG 60.508 66.667 0.00 0.00 0.00 4.01
432 440 2.100879 AAACGGCCTCTCGTCTGCTT 62.101 55.000 0.00 0.00 43.07 3.91
433 441 2.574955 AAACGGCCTCTCGTCTGCT 61.575 57.895 0.00 0.00 43.07 4.24
434 442 2.048127 AAACGGCCTCTCGTCTGC 60.048 61.111 0.00 0.00 43.07 4.26
445 453 2.670905 GGTTAAAATCATGGCAAACGGC 59.329 45.455 0.00 0.00 43.74 5.68
446 454 4.173256 GAGGTTAAAATCATGGCAAACGG 58.827 43.478 0.00 0.00 0.00 4.44
447 455 4.173256 GGAGGTTAAAATCATGGCAAACG 58.827 43.478 0.00 0.00 0.00 3.60
448 456 5.146010 TGGAGGTTAAAATCATGGCAAAC 57.854 39.130 0.00 0.00 0.00 2.93
449 457 5.815233 TTGGAGGTTAAAATCATGGCAAA 57.185 34.783 0.00 0.00 0.00 3.68
450 458 5.815233 TTTGGAGGTTAAAATCATGGCAA 57.185 34.783 0.00 0.00 0.00 4.52
451 459 5.541868 TCTTTTGGAGGTTAAAATCATGGCA 59.458 36.000 0.00 0.00 0.00 4.92
452 460 6.036577 TCTTTTGGAGGTTAAAATCATGGC 57.963 37.500 0.00 0.00 0.00 4.40
453 461 6.586082 CGTTCTTTTGGAGGTTAAAATCATGG 59.414 38.462 0.00 0.00 0.00 3.66
454 462 6.586082 CCGTTCTTTTGGAGGTTAAAATCATG 59.414 38.462 0.00 0.00 0.00 3.07
455 463 6.492087 TCCGTTCTTTTGGAGGTTAAAATCAT 59.508 34.615 0.00 0.00 0.00 2.45
457 465 6.321848 TCCGTTCTTTTGGAGGTTAAAATC 57.678 37.500 0.00 0.00 0.00 2.17
458 466 6.461927 GGTTCCGTTCTTTTGGAGGTTAAAAT 60.462 38.462 0.00 0.00 35.26 1.82
459 467 5.163530 GGTTCCGTTCTTTTGGAGGTTAAAA 60.164 40.000 0.00 0.00 35.26 1.52
460 468 4.338964 GGTTCCGTTCTTTTGGAGGTTAAA 59.661 41.667 0.00 0.00 35.26 1.52
461 469 3.884693 GGTTCCGTTCTTTTGGAGGTTAA 59.115 43.478 0.00 0.00 35.26 2.01
462 470 3.479489 GGTTCCGTTCTTTTGGAGGTTA 58.521 45.455 0.00 0.00 35.26 2.85
463 471 2.304092 GGTTCCGTTCTTTTGGAGGTT 58.696 47.619 0.00 0.00 35.26 3.50
464 472 1.478105 GGGTTCCGTTCTTTTGGAGGT 60.478 52.381 0.00 0.00 35.26 3.85
466 474 1.975660 TGGGTTCCGTTCTTTTGGAG 58.024 50.000 0.00 0.00 35.26 3.86
467 475 2.668144 ATGGGTTCCGTTCTTTTGGA 57.332 45.000 0.00 0.00 0.00 3.53
469 477 3.365565 CGGTAATGGGTTCCGTTCTTTTG 60.366 47.826 0.00 0.00 39.51 2.44
470 478 2.815503 CGGTAATGGGTTCCGTTCTTTT 59.184 45.455 0.00 0.00 39.51 2.27
472 480 1.624813 TCGGTAATGGGTTCCGTTCTT 59.375 47.619 0.00 0.00 43.94 2.52
473 481 1.206371 CTCGGTAATGGGTTCCGTTCT 59.794 52.381 0.00 0.00 43.94 3.01
474 482 1.648504 CTCGGTAATGGGTTCCGTTC 58.351 55.000 0.00 0.00 43.94 3.95
475 483 0.392060 GCTCGGTAATGGGTTCCGTT 60.392 55.000 0.00 0.00 43.94 4.44
476 484 1.219935 GCTCGGTAATGGGTTCCGT 59.780 57.895 0.00 0.00 43.94 4.69
478 486 1.947456 GATTGCTCGGTAATGGGTTCC 59.053 52.381 0.00 0.00 0.00 3.62
479 487 2.872858 GAGATTGCTCGGTAATGGGTTC 59.127 50.000 0.00 0.00 0.00 3.62
480 488 2.505819 AGAGATTGCTCGGTAATGGGTT 59.494 45.455 0.00 0.00 45.98 4.11
481 489 2.119495 AGAGATTGCTCGGTAATGGGT 58.881 47.619 0.00 0.00 45.98 4.51
482 490 2.487934 CAGAGATTGCTCGGTAATGGG 58.512 52.381 0.00 0.00 45.98 4.00
485 493 2.366916 CCTCCAGAGATTGCTCGGTAAT 59.633 50.000 0.00 0.00 45.98 1.89
487 495 1.063942 TCCTCCAGAGATTGCTCGGTA 60.064 52.381 0.00 0.00 45.98 4.02
488 496 0.324738 TCCTCCAGAGATTGCTCGGT 60.325 55.000 0.00 0.00 45.98 4.69
490 498 1.753649 TCTTCCTCCAGAGATTGCTCG 59.246 52.381 0.00 0.00 45.98 5.03
492 500 1.480137 CGTCTTCCTCCAGAGATTGCT 59.520 52.381 0.00 0.00 0.00 3.91
494 502 3.876274 TTCGTCTTCCTCCAGAGATTG 57.124 47.619 0.00 0.00 0.00 2.67
495 503 4.081917 GTCTTTCGTCTTCCTCCAGAGATT 60.082 45.833 0.00 0.00 0.00 2.40
497 505 2.820787 GTCTTTCGTCTTCCTCCAGAGA 59.179 50.000 0.00 0.00 0.00 3.10
499 507 1.540267 CGTCTTTCGTCTTCCTCCAGA 59.460 52.381 0.00 0.00 34.52 3.86
501 509 0.038526 GCGTCTTTCGTCTTCCTCCA 60.039 55.000 0.00 0.00 42.13 3.86
503 511 1.341606 CAGCGTCTTTCGTCTTCCTC 58.658 55.000 0.00 0.00 42.13 3.71
504 512 0.667792 GCAGCGTCTTTCGTCTTCCT 60.668 55.000 0.00 0.00 42.13 3.36
505 513 0.944311 TGCAGCGTCTTTCGTCTTCC 60.944 55.000 0.00 0.00 42.13 3.46
507 515 1.071605 GATGCAGCGTCTTTCGTCTT 58.928 50.000 7.43 0.00 42.13 3.01
508 516 0.038251 TGATGCAGCGTCTTTCGTCT 60.038 50.000 15.79 0.00 42.13 4.18
510 518 1.617755 CGTGATGCAGCGTCTTTCGT 61.618 55.000 15.79 0.00 42.13 3.85
513 521 0.792640 CTTCGTGATGCAGCGTCTTT 59.207 50.000 15.79 0.00 0.00 2.52
514 522 0.038251 TCTTCGTGATGCAGCGTCTT 60.038 50.000 15.79 0.00 0.00 3.01
515 523 0.457509 CTCTTCGTGATGCAGCGTCT 60.458 55.000 15.79 0.00 0.00 4.18
516 524 1.416813 CCTCTTCGTGATGCAGCGTC 61.417 60.000 7.77 7.77 0.00 5.19
517 525 1.446792 CCTCTTCGTGATGCAGCGT 60.447 57.895 0.00 0.00 0.00 5.07
518 526 2.806856 GCCTCTTCGTGATGCAGCG 61.807 63.158 0.00 0.00 36.52 5.18
519 527 1.300971 TTGCCTCTTCGTGATGCAGC 61.301 55.000 0.00 0.00 44.70 5.25
520 528 0.725686 CTTGCCTCTTCGTGATGCAG 59.274 55.000 0.00 3.95 44.70 4.41
521 529 1.300971 GCTTGCCTCTTCGTGATGCA 61.301 55.000 0.00 0.00 42.93 3.96
522 530 1.300971 TGCTTGCCTCTTCGTGATGC 61.301 55.000 0.00 2.79 36.94 3.91
524 532 0.322975 ACTGCTTGCCTCTTCGTGAT 59.677 50.000 0.00 0.00 0.00 3.06
525 533 0.601046 CACTGCTTGCCTCTTCGTGA 60.601 55.000 0.00 0.00 0.00 4.35
527 535 0.179045 AACACTGCTTGCCTCTTCGT 60.179 50.000 0.00 0.00 0.00 3.85
531 539 1.602311 CTTCAACACTGCTTGCCTCT 58.398 50.000 0.00 0.00 0.00 3.69
532 540 0.595095 CCTTCAACACTGCTTGCCTC 59.405 55.000 0.00 0.00 0.00 4.70
533 541 0.183492 TCCTTCAACACTGCTTGCCT 59.817 50.000 0.00 0.00 0.00 4.75
534 542 0.595095 CTCCTTCAACACTGCTTGCC 59.405 55.000 0.00 0.00 0.00 4.52
535 543 1.265365 GTCTCCTTCAACACTGCTTGC 59.735 52.381 0.00 0.00 0.00 4.01
536 544 2.564771 TGTCTCCTTCAACACTGCTTG 58.435 47.619 0.00 0.00 0.00 4.01
538 546 3.144506 CAATGTCTCCTTCAACACTGCT 58.855 45.455 0.00 0.00 0.00 4.24
539 547 2.227388 CCAATGTCTCCTTCAACACTGC 59.773 50.000 0.00 0.00 0.00 4.40
541 549 3.648067 TCTCCAATGTCTCCTTCAACACT 59.352 43.478 0.00 0.00 0.00 3.55
542 550 4.008074 TCTCCAATGTCTCCTTCAACAC 57.992 45.455 0.00 0.00 0.00 3.32
543 551 4.645535 CTTCTCCAATGTCTCCTTCAACA 58.354 43.478 0.00 0.00 0.00 3.33
544 552 3.438434 GCTTCTCCAATGTCTCCTTCAAC 59.562 47.826 0.00 0.00 0.00 3.18
545 553 3.560025 GGCTTCTCCAATGTCTCCTTCAA 60.560 47.826 0.00 0.00 34.01 2.69
547 555 2.637947 GGCTTCTCCAATGTCTCCTTC 58.362 52.381 0.00 0.00 34.01 3.46
548 556 1.283321 GGGCTTCTCCAATGTCTCCTT 59.717 52.381 0.00 0.00 36.21 3.36
550 558 0.915364 AGGGCTTCTCCAATGTCTCC 59.085 55.000 0.00 0.00 36.21 3.71
551 559 2.323968 GAGGGCTTCTCCAATGTCTC 57.676 55.000 0.00 0.00 36.52 3.36
560 568 2.414750 CTCGAGAGGAGGGCTTCTC 58.585 63.158 6.58 0.00 42.17 2.87
561 569 4.676363 CTCGAGAGGAGGGCTTCT 57.324 61.111 6.58 0.00 39.22 2.85
571 579 1.802136 GCTGTCATCTTGCCTCGAGAG 60.802 57.143 15.71 3.30 0.00 3.20
572 580 0.174389 GCTGTCATCTTGCCTCGAGA 59.826 55.000 15.71 0.00 0.00 4.04
574 582 0.390340 GTGCTGTCATCTTGCCTCGA 60.390 55.000 0.00 0.00 0.00 4.04
576 584 1.975363 GCGTGCTGTCATCTTGCCTC 61.975 60.000 0.00 0.00 0.00 4.70
577 585 2.037136 GCGTGCTGTCATCTTGCCT 61.037 57.895 0.00 0.00 0.00 4.75
578 586 2.482374 GCGTGCTGTCATCTTGCC 59.518 61.111 0.00 0.00 0.00 4.52
579 587 2.482374 GGCGTGCTGTCATCTTGC 59.518 61.111 0.00 0.00 0.00 4.01
580 588 2.743752 CGGGCGTGCTGTCATCTTG 61.744 63.158 0.00 0.00 0.00 3.02
581 589 2.434884 CGGGCGTGCTGTCATCTT 60.435 61.111 0.00 0.00 0.00 2.40
582 590 3.362399 CTCGGGCGTGCTGTCATCT 62.362 63.158 0.00 0.00 0.00 2.90
583 591 2.887568 CTCGGGCGTGCTGTCATC 60.888 66.667 0.00 0.00 0.00 2.92
606 688 1.902508 CTCCTGAACTGGTTGAGGCTA 59.097 52.381 12.88 0.00 42.61 3.93
609 691 1.002544 GGTCTCCTGAACTGGTTGAGG 59.997 57.143 11.75 11.75 43.97 3.86
611 693 0.679505 CGGTCTCCTGAACTGGTTGA 59.320 55.000 0.00 0.00 0.00 3.18
612 694 0.393077 ACGGTCTCCTGAACTGGTTG 59.607 55.000 0.00 0.00 0.00 3.77
614 696 2.050269 CACGGTCTCCTGAACTGGT 58.950 57.895 0.00 0.00 0.00 4.00
615 697 1.374758 GCACGGTCTCCTGAACTGG 60.375 63.158 0.00 0.00 0.00 4.00
616 698 1.734477 CGCACGGTCTCCTGAACTG 60.734 63.158 0.00 0.00 0.00 3.16
617 699 2.651361 CGCACGGTCTCCTGAACT 59.349 61.111 0.00 0.00 0.00 3.01
619 701 4.373116 GGCGCACGGTCTCCTGAA 62.373 66.667 10.83 0.00 0.00 3.02
624 706 1.022451 TATTTTGGGCGCACGGTCTC 61.022 55.000 10.83 0.00 0.00 3.36
626 708 1.427819 CTATTTTGGGCGCACGGTC 59.572 57.895 10.83 0.00 0.00 4.79
627 709 2.043980 CCTATTTTGGGCGCACGGT 61.044 57.895 10.83 0.00 0.00 4.83
629 711 2.102161 GCCTATTTTGGGCGCACG 59.898 61.111 10.83 0.00 40.19 5.34
635 717 2.883386 GAGCATCTGAGCCTATTTTGGG 59.117 50.000 0.00 0.00 34.23 4.12
658 1301 7.175119 TCGTGATCCCTAAGTATCTCAAGTATG 59.825 40.741 0.00 0.00 0.00 2.39
659 1302 7.232188 TCGTGATCCCTAAGTATCTCAAGTAT 58.768 38.462 0.00 0.00 0.00 2.12
666 1309 7.122948 GTGGATTATCGTGATCCCTAAGTATCT 59.877 40.741 10.44 0.00 41.97 1.98
674 1317 1.618837 CCGTGGATTATCGTGATCCCT 59.381 52.381 10.44 0.00 41.97 4.20
726 1377 4.413087 ACGTAGACGCAGAACTAAGAATG 58.587 43.478 1.14 0.00 44.43 2.67
740 1391 1.920574 CAAGATGCTTGGACGTAGACG 59.079 52.381 0.00 0.00 46.33 4.18
747 1398 3.366679 CCAACATGTCAAGATGCTTGGAC 60.367 47.826 0.00 5.43 37.04 4.02
768 1457 4.273318 AGAGGAATTTCATTGTAGGCACC 58.727 43.478 0.00 0.00 0.00 5.01
796 1485 0.798776 GCTCTGTTTGACATGGACGG 59.201 55.000 0.00 0.00 0.00 4.79
813 1502 3.534721 GGCTCTAAACAACGAGGCT 57.465 52.632 5.70 0.00 45.97 4.58
816 1505 3.604875 TTAGGGGCTCTAAACAACGAG 57.395 47.619 3.86 0.00 35.21 4.18
827 1516 4.503469 GGTGAACTAGCTTATTAGGGGCTC 60.503 50.000 0.00 0.00 37.50 4.70
831 1520 4.163458 TGTGGGTGAACTAGCTTATTAGGG 59.837 45.833 0.00 0.00 0.00 3.53
832 1521 5.353394 TGTGGGTGAACTAGCTTATTAGG 57.647 43.478 0.00 0.00 0.00 2.69
833 1522 5.760253 CCATGTGGGTGAACTAGCTTATTAG 59.240 44.000 0.00 0.00 0.00 1.73
834 1523 5.680619 CCATGTGGGTGAACTAGCTTATTA 58.319 41.667 0.00 0.00 0.00 0.98
836 1525 3.685550 GCCATGTGGGTGAACTAGCTTAT 60.686 47.826 0.00 0.00 39.65 1.73
837 1526 2.355716 GCCATGTGGGTGAACTAGCTTA 60.356 50.000 0.00 0.00 39.65 3.09
842 1566 1.298340 CGGCCATGTGGGTGAACTA 59.702 57.895 2.24 0.00 39.65 2.24
850 1574 3.993614 TTAGCAGCCGGCCATGTGG 62.994 63.158 26.15 7.16 46.50 4.17
887 1617 6.092670 TCCTAGATCGCATCTTGAAAAACTTG 59.907 38.462 4.35 0.00 40.76 3.16
913 1646 7.009723 GTGCTGTTTTTCCGATTCAAAAACTTA 59.990 33.333 18.35 8.29 46.81 2.24
919 1652 3.367607 CGTGCTGTTTTTCCGATTCAAA 58.632 40.909 0.00 0.00 0.00 2.69
927 1660 0.031994 ACATGGCGTGCTGTTTTTCC 59.968 50.000 6.62 0.00 0.00 3.13
928 1661 1.522258 CAACATGGCGTGCTGTTTTTC 59.478 47.619 6.62 0.00 33.45 2.29
931 1664 1.300080 GCAACATGGCGTGCTGTTT 60.300 52.632 11.42 0.00 33.45 2.83
934 1667 2.126618 CTGCAACATGGCGTGCTG 60.127 61.111 16.25 6.14 36.28 4.41
993 1730 9.573166 CAGATTAAGATTATGATGGGGTTTGTA 57.427 33.333 0.00 0.00 0.00 2.41
1055 1792 2.018324 GTTTCGCCTTTGCTGCTGC 61.018 57.895 8.89 8.89 40.20 5.25
1075 1812 1.404181 CCGTGACGACATGGTCTGATT 60.404 52.381 16.70 0.00 45.30 2.57
1232 1978 3.311110 AGAACCCGAAGCGGCTGA 61.311 61.111 1.81 0.00 46.86 4.26
1677 2447 0.636647 TGTAGGAGAGCTGGATGGGA 59.363 55.000 0.00 0.00 0.00 4.37
1865 2635 2.811317 CCAAGTCTGCGAGCGTCC 60.811 66.667 0.00 0.00 0.00 4.79
1940 2710 0.312416 GCGTTTACACATTGCCCACA 59.688 50.000 0.00 0.00 0.00 4.17
1944 2714 0.388006 GTGGGCGTTTACACATTGCC 60.388 55.000 0.00 0.00 44.98 4.52
1950 2720 1.277440 CACGTGTGGGCGTTTACAC 59.723 57.895 7.58 7.75 43.83 2.90
1951 2721 1.153409 ACACGTGTGGGCGTTTACA 60.153 52.632 22.71 0.00 43.83 2.41
1953 2723 3.720531 CACACGTGTGGGCGTTTA 58.279 55.556 35.65 0.00 43.83 2.01
1967 2737 4.701171 GGAACGGAAATATTAACACCCACA 59.299 41.667 0.00 0.00 0.00 4.17
1972 2742 9.413048 TGAAAAATGGAACGGAAATATTAACAC 57.587 29.630 0.00 0.00 0.00 3.32
1977 2747 9.369904 CTTCATGAAAAATGGAACGGAAATATT 57.630 29.630 9.88 0.00 0.00 1.28
1978 2748 7.981225 CCTTCATGAAAAATGGAACGGAAATAT 59.019 33.333 9.88 0.00 0.00 1.28
1979 2749 7.319646 CCTTCATGAAAAATGGAACGGAAATA 58.680 34.615 9.88 0.00 0.00 1.40
1982 2752 4.560513 GCCTTCATGAAAAATGGAACGGAA 60.561 41.667 14.06 0.00 0.00 4.30
1983 2753 3.056891 GCCTTCATGAAAAATGGAACGGA 60.057 43.478 14.06 0.00 0.00 4.69
1984 2754 3.253230 GCCTTCATGAAAAATGGAACGG 58.747 45.455 14.06 7.70 0.00 4.44
1985 2755 2.916716 CGCCTTCATGAAAAATGGAACG 59.083 45.455 14.06 6.42 0.00 3.95
1986 2756 3.056891 TCCGCCTTCATGAAAAATGGAAC 60.057 43.478 14.06 0.00 0.00 3.62
2026 3017 5.653769 CCAACATGATAAGTCCTGGAAATGT 59.346 40.000 0.00 0.00 0.00 2.71
2052 3043 3.543680 ATACGGTTGGAGATGGTTGAG 57.456 47.619 0.00 0.00 0.00 3.02
2055 3046 5.996644 TGATTTATACGGTTGGAGATGGTT 58.003 37.500 0.00 0.00 0.00 3.67
2072 3063 9.342308 GTTGGTGAGGAAGATAATGATGATTTA 57.658 33.333 0.00 0.00 0.00 1.40
2087 3078 2.151502 TGCCTTTTGTTGGTGAGGAA 57.848 45.000 0.00 0.00 0.00 3.36
2090 3081 3.125316 CACAATGCCTTTTGTTGGTGAG 58.875 45.455 0.00 0.00 37.73 3.51
2130 3121 1.533129 GGTGTTGTTTGTGAAGACGCC 60.533 52.381 0.00 0.00 0.00 5.68
2131 3122 1.822581 GGTGTTGTTTGTGAAGACGC 58.177 50.000 0.00 0.00 0.00 5.19
2133 3124 2.676342 AGACGGTGTTGTTTGTGAAGAC 59.324 45.455 0.00 0.00 0.00 3.01
2162 3154 2.445427 CAACACATGGGGCTGACATTA 58.555 47.619 0.00 0.00 0.00 1.90
2185 3177 3.207778 CACACGAGGTTACCCTGAAAAA 58.792 45.455 0.00 0.00 42.86 1.94
2186 3178 2.171027 ACACACGAGGTTACCCTGAAAA 59.829 45.455 0.00 0.00 42.86 2.29
2187 3179 1.764134 ACACACGAGGTTACCCTGAAA 59.236 47.619 0.00 0.00 42.86 2.69
2188 3180 1.416243 ACACACGAGGTTACCCTGAA 58.584 50.000 0.00 0.00 42.86 3.02
2189 3181 1.416243 AACACACGAGGTTACCCTGA 58.584 50.000 0.00 0.00 42.86 3.86
2190 3182 2.298163 ACTAACACACGAGGTTACCCTG 59.702 50.000 0.00 0.00 42.86 4.45
2191 3183 2.601905 ACTAACACACGAGGTTACCCT 58.398 47.619 0.00 0.00 46.66 4.34
2192 3184 3.391506 AACTAACACACGAGGTTACCC 57.608 47.619 0.00 0.00 0.00 3.69
2193 3185 5.928264 ACATAAACTAACACACGAGGTTACC 59.072 40.000 0.00 0.00 27.87 2.85
2194 3186 8.589629 CATACATAAACTAACACACGAGGTTAC 58.410 37.037 0.00 0.00 27.87 2.50
2195 3187 8.306038 ACATACATAAACTAACACACGAGGTTA 58.694 33.333 0.00 0.00 29.71 2.85
2196 3188 7.156673 ACATACATAAACTAACACACGAGGTT 58.843 34.615 0.00 0.00 0.00 3.50
2197 3189 6.694447 ACATACATAAACTAACACACGAGGT 58.306 36.000 0.00 0.00 0.00 3.85
2198 3190 7.591006 AACATACATAAACTAACACACGAGG 57.409 36.000 0.00 0.00 0.00 4.63
2199 3191 9.350357 ACTAACATACATAAACTAACACACGAG 57.650 33.333 0.00 0.00 0.00 4.18
2200 3192 9.695526 AACTAACATACATAAACTAACACACGA 57.304 29.630 0.00 0.00 0.00 4.35
2201 3193 9.735646 CAACTAACATACATAAACTAACACACG 57.264 33.333 0.00 0.00 0.00 4.49
2268 3260 9.121658 CTGGAAGCATATGAATATGAATAGCAT 57.878 33.333 6.97 0.00 42.05 3.79
2304 3296 1.502231 ACTACTTGCAAGTCACAGCG 58.498 50.000 34.29 18.17 40.37 5.18
2399 3405 0.313987 CGACATCGTAGGCAGGCATA 59.686 55.000 0.00 0.00 34.11 3.14
2416 3422 6.598064 TGATATACAATCCTCGAATAGAGCGA 59.402 38.462 0.00 0.00 45.54 4.93
2537 3544 4.181010 CCCACGGCTGATCCCCAG 62.181 72.222 0.00 0.00 45.67 4.45
2598 3606 4.440802 GGAGCTACAGACAGAATGACGAAT 60.441 45.833 0.00 0.00 39.69 3.34
2607 3615 4.096532 CGTCAATTAGGAGCTACAGACAGA 59.903 45.833 0.00 0.00 0.00 3.41
2608 3616 4.142359 ACGTCAATTAGGAGCTACAGACAG 60.142 45.833 0.00 0.00 0.00 3.51
2615 3623 4.153475 GCAAAACACGTCAATTAGGAGCTA 59.847 41.667 0.00 0.00 0.00 3.32
2631 3639 1.003331 CTCGTTAACTGGCGCAAAACA 60.003 47.619 10.83 0.00 0.00 2.83
2664 3672 0.458025 GGCCTATATACCAGCGACGC 60.458 60.000 13.03 13.03 0.00 5.19
2730 3738 2.879462 GTCGTTCGGCAGTAGCGG 60.879 66.667 0.00 0.00 43.41 5.52
2865 3888 9.810545 TCGAAGTTGGTGAAATTTCTTTTTATT 57.189 25.926 18.64 7.62 33.50 1.40
2868 3891 8.541133 TTTCGAAGTTGGTGAAATTTCTTTTT 57.459 26.923 18.64 5.46 33.50 1.94
2869 3892 8.440059 GTTTTCGAAGTTGGTGAAATTTCTTTT 58.560 29.630 18.64 4.84 33.50 2.27
2876 3899 5.106442 GGTTGTTTTCGAAGTTGGTGAAAT 58.894 37.500 0.00 0.00 32.20 2.17
2879 3902 3.082548 TGGTTGTTTTCGAAGTTGGTGA 58.917 40.909 0.00 0.00 0.00 4.02
2880 3903 3.495670 TGGTTGTTTTCGAAGTTGGTG 57.504 42.857 0.00 0.00 0.00 4.17
2881 3904 4.158764 TCATTGGTTGTTTTCGAAGTTGGT 59.841 37.500 0.00 0.00 0.00 3.67
2883 3906 6.826893 AATCATTGGTTGTTTTCGAAGTTG 57.173 33.333 0.00 0.00 0.00 3.16
2889 3912 9.432077 CCTTTTTAAAATCATTGGTTGTTTTCG 57.568 29.630 0.55 0.00 0.00 3.46
2976 4018 7.985634 TGCACTTTTCTCAAAATGAGTTTAC 57.014 32.000 7.21 0.00 44.58 2.01
2977 4019 8.632679 AGATGCACTTTTCTCAAAATGAGTTTA 58.367 29.630 7.21 0.00 44.58 2.01
2978 4020 7.495055 AGATGCACTTTTCTCAAAATGAGTTT 58.505 30.769 7.21 0.00 44.58 2.66
2979 4021 7.047460 AGATGCACTTTTCTCAAAATGAGTT 57.953 32.000 7.21 0.00 44.58 3.01
2982 4024 9.414295 CAAATAGATGCACTTTTCTCAAAATGA 57.586 29.630 0.00 0.00 0.00 2.57
2983 4025 9.414295 TCAAATAGATGCACTTTTCTCAAAATG 57.586 29.630 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.