Multiple sequence alignment - TraesCS5A01G405000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G405000 chr5A 100.000 3131 0 0 1 3131 596559149 596562279 0.000000e+00 5782.0
1 TraesCS5A01G405000 chr5B 96.147 2336 85 5 667 3000 585000049 585002381 0.000000e+00 3810.0
2 TraesCS5A01G405000 chr5B 86.853 251 16 13 1 248 584998878 584999114 6.660000e-67 265.0
3 TraesCS5A01G405000 chr5B 97.037 135 4 0 2997 3131 585002422 585002556 8.740000e-56 228.0
4 TraesCS5A01G405000 chr5B 91.026 78 7 0 239 316 584999502 584999579 4.270000e-19 106.0
5 TraesCS5A01G405000 chr5D 92.742 2535 121 23 497 2998 477328084 477330588 0.000000e+00 3603.0
6 TraesCS5A01G405000 chr5D 87.056 479 31 14 1 474 477327642 477328094 2.150000e-141 512.0
7 TraesCS5A01G405000 chr5D 91.111 135 11 1 2997 3131 477330631 477330764 6.900000e-42 182.0
8 TraesCS5A01G405000 chr5D 89.706 68 5 2 78 144 121069595 121069661 5.560000e-13 86.1
9 TraesCS5A01G405000 chr5D 100.000 30 0 0 107 136 462731507 462731536 4.360000e-04 56.5
10 TraesCS5A01G405000 chr7B 100.000 31 0 0 106 136 493756540 493756510 1.210000e-04 58.4
11 TraesCS5A01G405000 chrUn 89.130 46 3 1 107 150 351562810 351562855 4.360000e-04 56.5
12 TraesCS5A01G405000 chr6D 100.000 30 0 0 107 136 289143396 289143425 4.360000e-04 56.5
13 TraesCS5A01G405000 chr4B 100.000 30 0 0 107 136 80050332 80050303 4.360000e-04 56.5
14 TraesCS5A01G405000 chr6A 92.308 39 2 1 107 144 592629589 592629627 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G405000 chr5A 596559149 596562279 3130 False 5782.000000 5782 100.00000 1 3131 1 chr5A.!!$F1 3130
1 TraesCS5A01G405000 chr5B 584998878 585002556 3678 False 1102.250000 3810 92.76575 1 3131 4 chr5B.!!$F1 3130
2 TraesCS5A01G405000 chr5D 477327642 477330764 3122 False 1432.333333 3603 90.30300 1 3131 3 chr5D.!!$F3 3130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
775 1396 0.941542 TTCGTCACGCTGGAAAAAGG 59.058 50.0 0.00 0.0 0.00 3.11 F
1556 2182 0.753479 TGGGTCAACGTGGTTGCAAT 60.753 50.0 0.59 0.0 42.55 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1980 2606 0.250234 CACTCTTTCTCGCCCCATCA 59.750 55.0 0.0 0.0 0.00 3.07 R
2819 3454 2.234908 AGACGGAGGAACAGAAATCCAG 59.765 50.0 0.0 0.0 39.55 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 141 2.291209 TGATTGCATGTTGAGGTGGT 57.709 45.000 0.00 0.00 0.00 4.16
146 151 5.739935 GCATGTTGAGGTGGTTCTTTTCATT 60.740 40.000 0.00 0.00 0.00 2.57
147 152 5.930837 TGTTGAGGTGGTTCTTTTCATTT 57.069 34.783 0.00 0.00 0.00 2.32
150 155 8.017418 TGTTGAGGTGGTTCTTTTCATTTATT 57.983 30.769 0.00 0.00 0.00 1.40
151 156 7.925483 TGTTGAGGTGGTTCTTTTCATTTATTG 59.075 33.333 0.00 0.00 0.00 1.90
152 157 7.595819 TGAGGTGGTTCTTTTCATTTATTGT 57.404 32.000 0.00 0.00 0.00 2.71
174 179 4.264380 GTGTTGACGGTTGAATTGTGTTTC 59.736 41.667 0.00 0.00 0.00 2.78
177 182 5.317733 TGACGGTTGAATTGTGTTTCTTT 57.682 34.783 0.00 0.00 0.00 2.52
178 183 5.336744 TGACGGTTGAATTGTGTTTCTTTC 58.663 37.500 0.00 0.00 0.00 2.62
179 184 5.106118 TGACGGTTGAATTGTGTTTCTTTCA 60.106 36.000 0.00 0.00 0.00 2.69
188 193 8.763356 TGAATTGTGTTTCTTTCAATGCATAAC 58.237 29.630 0.00 0.00 33.72 1.89
212 217 4.184629 GCATGTGGTGAGAAGTAGGTTAG 58.815 47.826 0.00 0.00 0.00 2.34
224 229 3.450904 AGTAGGTTAGCAAGGATCACCA 58.549 45.455 0.00 0.00 38.94 4.17
268 668 8.362639 CCCTCTTTTCAATAATTATGGTCATGG 58.637 37.037 0.00 0.00 0.00 3.66
311 711 1.569548 ACTCTATGGAACGGAGGGAGA 59.430 52.381 0.00 0.00 0.00 3.71
316 716 1.267121 TGGAACGGAGGGAGAAGAAG 58.733 55.000 0.00 0.00 0.00 2.85
318 718 1.066787 GGAACGGAGGGAGAAGAAGTG 60.067 57.143 0.00 0.00 0.00 3.16
320 720 2.011122 ACGGAGGGAGAAGAAGTGAA 57.989 50.000 0.00 0.00 0.00 3.18
321 721 1.896465 ACGGAGGGAGAAGAAGTGAAG 59.104 52.381 0.00 0.00 0.00 3.02
324 724 3.615351 CGGAGGGAGAAGAAGTGAAGAAC 60.615 52.174 0.00 0.00 0.00 3.01
342 742 6.206634 TGAAGAACTTATTGGTGTGATGTTCC 59.793 38.462 0.00 0.00 34.62 3.62
369 770 2.092049 GGGGGAAAACAGTAGTATGGGG 60.092 54.545 0.00 0.00 0.00 4.96
374 775 4.698780 GGAAAACAGTAGTATGGGGTTGAC 59.301 45.833 0.00 0.00 0.00 3.18
394 991 2.819608 ACGTTACAAAGCTGAATGCCAT 59.180 40.909 0.00 0.00 44.23 4.40
395 992 3.255642 ACGTTACAAAGCTGAATGCCATT 59.744 39.130 0.00 0.00 44.23 3.16
396 993 4.236935 CGTTACAAAGCTGAATGCCATTT 58.763 39.130 0.00 0.00 44.23 2.32
397 994 5.048364 ACGTTACAAAGCTGAATGCCATTTA 60.048 36.000 0.00 0.00 44.23 1.40
398 995 5.286082 CGTTACAAAGCTGAATGCCATTTAC 59.714 40.000 0.00 0.00 44.23 2.01
399 996 4.192429 ACAAAGCTGAATGCCATTTACC 57.808 40.909 0.00 0.00 44.23 2.85
400 997 3.181397 CAAAGCTGAATGCCATTTACCG 58.819 45.455 0.00 0.00 44.23 4.02
447 1044 2.882761 TCAATGCCATAGAAGCTGATGC 59.117 45.455 0.00 0.00 40.05 3.91
540 1137 2.616634 CATGCCTGCATGTAGAGAGT 57.383 50.000 21.12 0.00 46.20 3.24
541 1138 3.740631 CATGCCTGCATGTAGAGAGTA 57.259 47.619 21.12 0.00 46.20 2.59
542 1139 3.651206 CATGCCTGCATGTAGAGAGTAG 58.349 50.000 21.12 0.00 46.20 2.57
543 1140 3.018423 TGCCTGCATGTAGAGAGTAGA 57.982 47.619 12.93 0.00 0.00 2.59
544 1141 2.954989 TGCCTGCATGTAGAGAGTAGAG 59.045 50.000 12.93 0.00 0.00 2.43
545 1142 3.218453 GCCTGCATGTAGAGAGTAGAGA 58.782 50.000 12.93 0.00 0.00 3.10
546 1143 3.004315 GCCTGCATGTAGAGAGTAGAGAC 59.996 52.174 12.93 0.00 0.00 3.36
547 1144 4.203226 CCTGCATGTAGAGAGTAGAGACA 58.797 47.826 12.93 0.00 0.00 3.41
548 1145 4.275689 CCTGCATGTAGAGAGTAGAGACAG 59.724 50.000 12.93 0.00 0.00 3.51
549 1146 5.104259 TGCATGTAGAGAGTAGAGACAGA 57.896 43.478 0.00 0.00 0.00 3.41
550 1147 5.122519 TGCATGTAGAGAGTAGAGACAGAG 58.877 45.833 0.00 0.00 0.00 3.35
551 1148 5.123227 GCATGTAGAGAGTAGAGACAGAGT 58.877 45.833 0.00 0.00 0.00 3.24
552 1149 6.127026 TGCATGTAGAGAGTAGAGACAGAGTA 60.127 42.308 0.00 0.00 0.00 2.59
553 1150 6.764085 GCATGTAGAGAGTAGAGACAGAGTAA 59.236 42.308 0.00 0.00 0.00 2.24
557 1155 9.742144 TGTAGAGAGTAGAGACAGAGTAATTTT 57.258 33.333 0.00 0.00 0.00 1.82
601 1199 3.107447 GCCCGGCGTTATCTTTGG 58.893 61.111 6.01 0.00 0.00 3.28
602 1200 2.478033 GCCCGGCGTTATCTTTGGG 61.478 63.158 6.01 0.00 39.72 4.12
603 1201 1.078001 CCCGGCGTTATCTTTGGGT 60.078 57.895 6.01 0.00 31.82 4.51
637 1258 1.853319 CCGAACAGAACTGCACGTC 59.147 57.895 15.23 0.00 33.22 4.34
643 1264 2.906354 ACAGAACTGCACGTCTCTTTT 58.094 42.857 1.46 0.00 0.00 2.27
670 1291 5.381757 GCCCAAAGTATGTATGGTCCATAA 58.618 41.667 13.37 4.91 32.13 1.90
775 1396 0.941542 TTCGTCACGCTGGAAAAAGG 59.058 50.000 0.00 0.00 0.00 3.11
1556 2182 0.753479 TGGGTCAACGTGGTTGCAAT 60.753 50.000 0.59 0.00 42.55 3.56
1685 2311 1.467920 GAAGGGCTCACCAATCCAAG 58.532 55.000 0.00 0.00 43.89 3.61
1689 2315 2.892025 GCTCACCAATCCAAGCCAT 58.108 52.632 0.00 0.00 0.00 4.40
2070 2696 1.557099 AGTCTATGGTTCTCGCCACA 58.443 50.000 0.00 0.00 41.94 4.17
2100 2726 1.237533 CACTGTGCCTGCATGTGTTA 58.762 50.000 15.37 0.00 32.68 2.41
2139 2765 0.521291 TTACCGCTTGAACATGCAGC 59.479 50.000 11.89 0.00 0.00 5.25
2168 2794 1.359474 TGGGGGCTTTTGGCTTGTATA 59.641 47.619 0.00 0.00 45.25 1.47
2199 2825 8.372521 GCACATTGTTTATGTACAAATTGTAGC 58.627 33.333 6.03 2.91 45.71 3.58
2287 2913 4.685924 CAAGGCTTTATTGTGGCTTATGG 58.314 43.478 0.00 0.00 45.27 2.74
2314 2940 5.221244 GGGGTTGTTATTCATGGCTGTAATC 60.221 44.000 0.00 0.00 0.00 1.75
2316 2942 5.295787 GGTTGTTATTCATGGCTGTAATCGA 59.704 40.000 0.00 0.00 0.00 3.59
2321 2947 3.885724 TCATGGCTGTAATCGAAGTGA 57.114 42.857 0.00 0.00 0.00 3.41
2355 2981 2.687935 GCCCTTGAGAAAGTGTGTTTGA 59.312 45.455 0.00 0.00 0.00 2.69
2368 2994 4.588528 AGTGTGTTTGAGGCATTATTTGGT 59.411 37.500 0.00 0.00 0.00 3.67
2385 3011 8.500753 TTATTTGGTATGGAGATGTGTTGTAC 57.499 34.615 0.00 0.00 0.00 2.90
2409 3035 6.485313 ACGTTTGAAGGAATTTGTATCACTGA 59.515 34.615 0.00 0.00 0.00 3.41
2416 3042 7.856145 AGGAATTTGTATCACTGACATCTTC 57.144 36.000 0.00 0.00 0.00 2.87
2464 3090 8.450964 TCATCAATATCGAAAGTTTTTCTGGTC 58.549 33.333 0.00 0.00 0.00 4.02
2614 3240 4.297510 TGTGAATGCTTTGTTTGGATTCG 58.702 39.130 0.00 0.00 42.54 3.34
2664 3291 7.334844 TCTATGTAGATTTGTGATGACGACT 57.665 36.000 0.00 0.00 0.00 4.18
2783 3410 1.004610 GTGATGTCGATGCATTGTCCG 60.005 52.381 13.73 6.50 0.00 4.79
2792 3419 3.181507 CGATGCATTGTCCGATGAAAGTT 60.182 43.478 0.00 0.00 0.00 2.66
2816 3451 5.823209 CCCCCAAAGGTAAAATACTAACG 57.177 43.478 0.00 0.00 0.00 3.18
2819 3454 5.355071 CCCCAAAGGTAAAATACTAACGGAC 59.645 44.000 0.00 0.00 0.00 4.79
2828 3463 7.767659 GGTAAAATACTAACGGACTGGATTTCT 59.232 37.037 0.00 0.00 0.00 2.52
2844 3479 3.314541 TTTCTGTTCCTCCGTCTTAGC 57.685 47.619 0.00 0.00 0.00 3.09
2858 3493 5.009710 TCCGTCTTAGCTTACATGATACAGG 59.990 44.000 0.00 0.00 0.00 4.00
2878 3513 2.851824 GGTGCAGAAACAGTTTTTGACG 59.148 45.455 18.47 0.04 0.00 4.35
3001 3680 3.668447 AGAAACTGCAGTATCCACAGTG 58.332 45.455 22.01 0.00 43.63 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 141 7.484975 ACCGTCAACACAATAAATGAAAAGAA 58.515 30.769 0.00 0.00 0.00 2.52
146 151 5.974158 CACAATTCAACCGTCAACACAATAA 59.026 36.000 0.00 0.00 0.00 1.40
147 152 5.066634 ACACAATTCAACCGTCAACACAATA 59.933 36.000 0.00 0.00 0.00 1.90
150 155 2.750166 ACACAATTCAACCGTCAACACA 59.250 40.909 0.00 0.00 0.00 3.72
151 156 3.414549 ACACAATTCAACCGTCAACAC 57.585 42.857 0.00 0.00 0.00 3.32
152 157 4.156922 AGAAACACAATTCAACCGTCAACA 59.843 37.500 0.00 0.00 0.00 3.33
188 193 2.027745 ACCTACTTCTCACCACATGCAG 60.028 50.000 0.00 0.00 0.00 4.41
268 668 9.880064 GAGTTTAGTTCAAATTTGGACTAGAAC 57.120 33.333 29.78 29.78 46.79 3.01
311 711 7.054124 TCACACCAATAAGTTCTTCACTTCTT 58.946 34.615 0.00 0.00 42.62 2.52
316 716 6.560253 ACATCACACCAATAAGTTCTTCAC 57.440 37.500 0.00 0.00 0.00 3.18
318 718 6.431234 AGGAACATCACACCAATAAGTTCTTC 59.569 38.462 0.00 0.00 35.49 2.87
320 720 5.880901 AGGAACATCACACCAATAAGTTCT 58.119 37.500 0.00 0.00 35.49 3.01
321 721 6.575162 AAGGAACATCACACCAATAAGTTC 57.425 37.500 0.00 0.00 34.67 3.01
324 724 7.362920 CCCTAAAAGGAACATCACACCAATAAG 60.363 40.741 0.00 0.00 37.67 1.73
333 733 3.732048 TCCCCCTAAAAGGAACATCAC 57.268 47.619 0.00 0.00 37.67 3.06
342 742 6.602009 CCATACTACTGTTTTCCCCCTAAAAG 59.398 42.308 0.00 0.00 0.00 2.27
369 770 3.664025 GCATTCAGCTTTGTAACGTCAAC 59.336 43.478 0.00 0.00 41.15 3.18
374 775 2.987413 TGGCATTCAGCTTTGTAACG 57.013 45.000 0.00 0.00 44.79 3.18
394 991 5.416271 AAAGAATCTGCCTCTACGGTAAA 57.584 39.130 0.00 0.00 34.25 2.01
395 992 5.416271 AAAAGAATCTGCCTCTACGGTAA 57.584 39.130 0.00 0.00 34.25 2.85
396 993 5.416271 AAAAAGAATCTGCCTCTACGGTA 57.584 39.130 0.00 0.00 34.25 4.02
397 994 3.983044 AAAAGAATCTGCCTCTACGGT 57.017 42.857 0.00 0.00 34.25 4.83
476 1073 9.945904 TTCCCTACCGCAAAAATAAAATAAAAT 57.054 25.926 0.00 0.00 0.00 1.82
477 1074 9.945904 ATTCCCTACCGCAAAAATAAAATAAAA 57.054 25.926 0.00 0.00 0.00 1.52
478 1075 9.372369 CATTCCCTACCGCAAAAATAAAATAAA 57.628 29.630 0.00 0.00 0.00 1.40
479 1076 8.750298 TCATTCCCTACCGCAAAAATAAAATAA 58.250 29.630 0.00 0.00 0.00 1.40
480 1077 8.294954 TCATTCCCTACCGCAAAAATAAAATA 57.705 30.769 0.00 0.00 0.00 1.40
481 1078 7.176589 TCATTCCCTACCGCAAAAATAAAAT 57.823 32.000 0.00 0.00 0.00 1.82
482 1079 6.591750 TCATTCCCTACCGCAAAAATAAAA 57.408 33.333 0.00 0.00 0.00 1.52
483 1080 6.153680 ACATCATTCCCTACCGCAAAAATAAA 59.846 34.615 0.00 0.00 0.00 1.40
484 1081 5.654650 ACATCATTCCCTACCGCAAAAATAA 59.345 36.000 0.00 0.00 0.00 1.40
485 1082 5.197451 ACATCATTCCCTACCGCAAAAATA 58.803 37.500 0.00 0.00 0.00 1.40
486 1083 4.023291 ACATCATTCCCTACCGCAAAAAT 58.977 39.130 0.00 0.00 0.00 1.82
487 1084 3.426615 ACATCATTCCCTACCGCAAAAA 58.573 40.909 0.00 0.00 0.00 1.94
488 1085 3.080300 ACATCATTCCCTACCGCAAAA 57.920 42.857 0.00 0.00 0.00 2.44
489 1086 2.799126 ACATCATTCCCTACCGCAAA 57.201 45.000 0.00 0.00 0.00 3.68
490 1087 2.799126 AACATCATTCCCTACCGCAA 57.201 45.000 0.00 0.00 0.00 4.85
491 1088 2.799126 AAACATCATTCCCTACCGCA 57.201 45.000 0.00 0.00 0.00 5.69
492 1089 3.942748 TGTAAAACATCATTCCCTACCGC 59.057 43.478 0.00 0.00 0.00 5.68
493 1090 6.503589 TTTGTAAAACATCATTCCCTACCG 57.496 37.500 0.00 0.00 0.00 4.02
494 1091 6.152831 AGCTTTGTAAAACATCATTCCCTACC 59.847 38.462 0.00 0.00 0.00 3.18
495 1092 7.029563 CAGCTTTGTAAAACATCATTCCCTAC 58.970 38.462 0.00 0.00 0.00 3.18
496 1093 6.350110 GCAGCTTTGTAAAACATCATTCCCTA 60.350 38.462 0.00 0.00 0.00 3.53
497 1094 5.567423 GCAGCTTTGTAAAACATCATTCCCT 60.567 40.000 0.00 0.00 0.00 4.20
498 1095 4.627035 GCAGCTTTGTAAAACATCATTCCC 59.373 41.667 0.00 0.00 0.00 3.97
557 1155 3.480470 CCTCTGTGGCTTCTCTTCAAAA 58.520 45.455 0.00 0.00 0.00 2.44
585 1183 0.678684 AACCCAAAGATAACGCCGGG 60.679 55.000 2.18 0.00 39.72 5.73
618 1216 2.159272 GACGTGCAGTTCTGTTCGGC 62.159 60.000 0.00 12.82 0.00 5.54
619 1217 0.597637 AGACGTGCAGTTCTGTTCGG 60.598 55.000 0.00 3.68 0.00 4.30
620 1218 0.778815 GAGACGTGCAGTTCTGTTCG 59.221 55.000 0.00 13.28 0.00 3.95
624 1222 3.602491 CGAAAAAGAGACGTGCAGTTCTG 60.602 47.826 0.00 0.00 0.00 3.02
625 1223 2.540101 CGAAAAAGAGACGTGCAGTTCT 59.460 45.455 0.00 0.00 0.00 3.01
626 1224 2.348591 CCGAAAAAGAGACGTGCAGTTC 60.349 50.000 0.00 0.00 0.00 3.01
637 1258 3.506067 ACATACTTTGGGCCGAAAAAGAG 59.494 43.478 23.49 11.91 36.96 2.85
643 1264 2.240160 ACCATACATACTTTGGGCCGAA 59.760 45.455 5.96 5.96 34.72 4.30
796 1418 4.065088 TCCTCACGAATTCCACTCTTTTG 58.935 43.478 0.00 0.00 0.00 2.44
826 1448 2.050350 CGGCCGACTACTTCCCAGA 61.050 63.158 24.07 0.00 0.00 3.86
1556 2182 2.525592 CCTTGTGCCCCTTTCCCA 59.474 61.111 0.00 0.00 0.00 4.37
1685 2311 1.926511 CTTGACCTTGGCGTCATGGC 61.927 60.000 20.91 14.05 42.20 4.40
1689 2315 0.400213 ATTCCTTGACCTTGGCGTCA 59.600 50.000 0.00 0.00 40.98 4.35
1797 2423 1.264295 TGCTGTTGCCATTGCCATTA 58.736 45.000 0.00 0.00 38.71 1.90
1980 2606 0.250234 CACTCTTTCTCGCCCCATCA 59.750 55.000 0.00 0.00 0.00 3.07
2062 2688 2.009051 TGTTATGCAGATTGTGGCGAG 58.991 47.619 0.00 0.00 0.00 5.03
2070 2696 2.751259 CAGGCACAGTGTTATGCAGATT 59.249 45.455 1.61 0.00 43.93 2.40
2139 2765 2.963391 AAAAGCCCCCACCCTGTTGG 62.963 60.000 0.00 0.00 41.37 3.77
2194 2820 9.944663 CAGTTTTTCAGTACAATTTTAGCTACA 57.055 29.630 0.00 0.00 0.00 2.74
2235 2861 6.686484 AATTACCCCATTTCAGCTCTTTTT 57.314 33.333 0.00 0.00 0.00 1.94
2249 2875 1.974236 CCTTGCAACCAAATTACCCCA 59.026 47.619 0.00 0.00 0.00 4.96
2257 2883 4.125703 CACAATAAAGCCTTGCAACCAAA 58.874 39.130 0.00 0.00 0.00 3.28
2287 2913 2.831526 AGCCATGAATAACAACCCCAAC 59.168 45.455 0.00 0.00 0.00 3.77
2314 2940 3.670055 GGCACAACAAATCAATCACTTCG 59.330 43.478 0.00 0.00 0.00 3.79
2316 2942 3.642848 AGGGCACAACAAATCAATCACTT 59.357 39.130 0.00 0.00 0.00 3.16
2321 2947 3.896888 TCTCAAGGGCACAACAAATCAAT 59.103 39.130 0.00 0.00 0.00 2.57
2355 2981 5.771666 CACATCTCCATACCAAATAATGCCT 59.228 40.000 0.00 0.00 0.00 4.75
2368 2994 5.785243 TCAAACGTACAACACATCTCCATA 58.215 37.500 0.00 0.00 0.00 2.74
2385 3011 6.797033 GTCAGTGATACAAATTCCTTCAAACG 59.203 38.462 0.00 0.00 0.00 3.60
2409 3035 9.346005 TCAGCAATGTTATAATGATGAAGATGT 57.654 29.630 3.62 0.00 36.63 3.06
2464 3090 6.735130 AGAAAACAAGACAATTAGGAAACCG 58.265 36.000 0.00 0.00 0.00 4.44
2652 3279 7.653311 CAGGATGAATAATAAGTCGTCATCACA 59.347 37.037 12.53 0.00 44.13 3.58
2671 3298 5.045066 ACCTCTAGTACACTACACAGGATGA 60.045 44.000 0.00 0.00 39.69 2.92
2803 3438 8.601476 CAGAAATCCAGTCCGTTAGTATTTTAC 58.399 37.037 0.00 0.00 0.00 2.01
2816 3451 2.678190 CGGAGGAACAGAAATCCAGTCC 60.678 54.545 0.00 0.00 39.55 3.85
2819 3454 2.234908 AGACGGAGGAACAGAAATCCAG 59.765 50.000 0.00 0.00 39.55 3.86
2828 3463 3.159472 TGTAAGCTAAGACGGAGGAACA 58.841 45.455 0.00 0.00 0.00 3.18
2844 3479 5.643348 TGTTTCTGCACCTGTATCATGTAAG 59.357 40.000 0.00 0.00 0.00 2.34
2858 3493 3.498082 ACGTCAAAAACTGTTTCTGCAC 58.502 40.909 6.20 3.31 0.00 4.57
2878 3513 4.760204 AGCAACCAAATCTAACACCAGTAC 59.240 41.667 0.00 0.00 0.00 2.73
2931 3566 6.994221 TGTCCAAAAGGAACAGTTTAAAACA 58.006 32.000 0.00 0.00 0.00 2.83
3061 3740 8.822805 TCTTTCCCTAACTATACAAAGTGTCAT 58.177 33.333 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.