Multiple sequence alignment - TraesCS5A01G404800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G404800 chr5A 100.000 4297 0 0 1 4297 596524519 596520223 0.000000e+00 7936
1 TraesCS5A01G404800 chr5B 91.727 3481 195 43 527 3944 584887409 584883959 0.000000e+00 4747
2 TraesCS5A01G404800 chr5B 82.627 472 58 14 20 474 584893459 584892995 3.110000e-106 396
3 TraesCS5A01G404800 chr5D 92.483 3299 197 21 777 4042 477315381 477312101 0.000000e+00 4671
4 TraesCS5A01G404800 chr5D 85.412 473 53 5 1 460 477316178 477315709 1.080000e-130 477


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G404800 chr5A 596520223 596524519 4296 True 7936 7936 100.0000 1 4297 1 chr5A.!!$R1 4296
1 TraesCS5A01G404800 chr5B 584883959 584887409 3450 True 4747 4747 91.7270 527 3944 1 chr5B.!!$R1 3417
2 TraesCS5A01G404800 chr5D 477312101 477316178 4077 True 2574 4671 88.9475 1 4042 2 chr5D.!!$R1 4041

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 359 0.809636 CATGGCCATCGCTCGTGTAA 60.810 55.0 17.61 0.0 34.44 2.41 F
1399 1517 0.322322 CCTGGGTACGGTGCTTGTTA 59.678 55.0 0.00 0.0 0.00 2.41 F
1910 2028 0.034186 GGTCATCTTGATGGGTGCCA 60.034 55.0 10.29 0.0 38.19 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 1791 0.178909 TGGGCAATTGGGTGGTGAAT 60.179 50.000 7.72 0.0 0.00 2.57 R
2201 2331 1.134694 GAAAACATCTGGCGCGACC 59.865 57.895 10.82 11.5 39.84 4.79 R
3815 3968 0.251916 TATTCTCCCCTTGTGGCACG 59.748 55.000 13.77 0.0 0.00 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.512926 ATCACAAGTGAAGTGGTCGC 58.487 50.000 7.02 0.00 43.58 5.19
39 40 1.299468 GTCGCTCCATCTAGCACCG 60.299 63.158 0.00 0.00 42.91 4.94
55 56 1.197721 CACCGTCAACTGAAGCCATTC 59.802 52.381 0.00 0.00 35.87 2.67
107 108 6.541264 AGTATACCCTTGTAGGTAGGATCA 57.459 41.667 0.00 0.00 45.46 2.92
124 125 5.702865 AGGATCAACACAAATTGAACATCG 58.297 37.500 0.00 0.00 41.78 3.84
160 161 6.501781 CCACTTGAGCCAATAATTCATTCTC 58.498 40.000 0.00 0.00 0.00 2.87
162 163 7.363181 CCACTTGAGCCAATAATTCATTCTCAA 60.363 37.037 0.00 0.00 36.15 3.02
163 164 7.487189 CACTTGAGCCAATAATTCATTCTCAAC 59.513 37.037 0.00 0.00 34.75 3.18
164 165 7.395489 ACTTGAGCCAATAATTCATTCTCAACT 59.605 33.333 0.00 0.00 34.75 3.16
177 178 8.627208 TTCATTCTCAACTAAGCAATTTCTCT 57.373 30.769 0.00 0.00 0.00 3.10
181 182 6.524734 TCTCAACTAAGCAATTTCTCTGACA 58.475 36.000 0.00 0.00 0.00 3.58
184 185 6.767902 TCAACTAAGCAATTTCTCTGACACTT 59.232 34.615 0.00 0.00 0.00 3.16
189 190 4.340381 AGCAATTTCTCTGACACTTGCTTT 59.660 37.500 1.98 0.00 44.95 3.51
193 194 1.141657 TCTCTGACACTTGCTTTGGCT 59.858 47.619 0.00 0.00 39.59 4.75
201 214 2.036217 CACTTGCTTTGGCTCCAATTCA 59.964 45.455 1.72 1.32 39.59 2.57
211 224 6.882610 TTGGCTCCAATTCATGTATATGTC 57.117 37.500 0.00 0.00 35.73 3.06
214 227 4.692625 GCTCCAATTCATGTATATGTCGCT 59.307 41.667 0.00 0.00 35.73 4.93
219 232 8.128582 TCCAATTCATGTATATGTCGCTTTTTC 58.871 33.333 0.00 0.00 35.73 2.29
221 234 9.507280 CAATTCATGTATATGTCGCTTTTTCTT 57.493 29.630 0.00 0.00 35.73 2.52
228 241 9.031360 TGTATATGTCGCTTTTTCTTGATAGAC 57.969 33.333 0.00 0.00 0.00 2.59
342 355 4.552365 CCCATGGCCATCGCTCGT 62.552 66.667 17.61 0.00 34.44 4.18
346 359 0.809636 CATGGCCATCGCTCGTGTAA 60.810 55.000 17.61 0.00 34.44 2.41
348 361 1.017177 TGGCCATCGCTCGTGTAAAC 61.017 55.000 0.00 0.00 34.44 2.01
376 389 3.572642 TCCTATTCCTCACCTATTGCGA 58.427 45.455 0.00 0.00 0.00 5.10
404 417 2.955660 GTCACCCATTCACACAAGGAAA 59.044 45.455 0.00 0.00 0.00 3.13
407 420 3.321682 CACCCATTCACACAAGGAAACAT 59.678 43.478 0.00 0.00 0.00 2.71
409 422 3.366273 CCCATTCACACAAGGAAACATCG 60.366 47.826 0.00 0.00 0.00 3.84
415 428 2.105821 ACACAAGGAAACATCGAAGGGA 59.894 45.455 0.00 0.00 0.00 4.20
417 430 3.568007 CACAAGGAAACATCGAAGGGAAA 59.432 43.478 0.00 0.00 0.00 3.13
425 438 4.130286 ACATCGAAGGGAAAGTGAGATC 57.870 45.455 0.00 0.00 0.00 2.75
430 443 1.521681 GGGAAAGTGAGATCGGCCG 60.522 63.158 22.12 22.12 0.00 6.13
441 454 1.227853 ATCGGCCGACCCATTTAGC 60.228 57.895 33.75 0.00 0.00 3.09
449 462 2.288886 CCGACCCATTTAGCTAGCTACC 60.289 54.545 24.09 6.73 0.00 3.18
453 466 5.377478 GACCCATTTAGCTAGCTACCAAAT 58.623 41.667 24.09 19.04 0.00 2.32
457 478 5.456763 CCATTTAGCTAGCTACCAAATCCCT 60.457 44.000 24.09 0.58 0.00 4.20
462 483 4.950475 AGCTAGCTACCAAATCCCTTTTTC 59.050 41.667 17.69 0.00 0.00 2.29
469 490 7.071196 AGCTACCAAATCCCTTTTTCTTTCTTT 59.929 33.333 0.00 0.00 0.00 2.52
474 495 9.559732 CCAAATCCCTTTTTCTTTCTTTACATT 57.440 29.630 0.00 0.00 0.00 2.71
476 497 9.778741 AAATCCCTTTTTCTTTCTTTACATTCC 57.221 29.630 0.00 0.00 0.00 3.01
765 803 3.195698 GCTCCGTGCGATTGACCC 61.196 66.667 0.00 0.00 0.00 4.46
797 905 0.810016 ACGAGAAGCTAGAACCCGTC 59.190 55.000 0.00 0.00 0.00 4.79
828 936 2.818751 ATAAAATCACCGGCCCAGAA 57.181 45.000 0.00 0.00 0.00 3.02
849 957 3.549794 AGCAAGATATTTGCCTCTCACC 58.450 45.455 14.85 0.00 45.98 4.02
863 971 1.153269 TCACCTCACTTGTGCGCAA 60.153 52.632 14.00 12.92 33.71 4.85
1030 1139 2.352032 ACGTGCTACCTCCTCCTGC 61.352 63.158 0.00 0.00 0.00 4.85
1251 1369 1.709994 GCGAGGATGGGAAGGGGAAT 61.710 60.000 0.00 0.00 0.00 3.01
1388 1506 2.919043 CCTCATGGCCCTGGGTAC 59.081 66.667 15.56 8.60 0.00 3.34
1399 1517 0.322322 CCTGGGTACGGTGCTTGTTA 59.678 55.000 0.00 0.00 0.00 2.41
1631 1749 2.283676 TCCTCGCCGGTCTTCCTT 60.284 61.111 1.90 0.00 0.00 3.36
1673 1791 4.019312 TCGCTGATGGCCTGCACA 62.019 61.111 3.32 0.00 39.38 4.57
1706 1824 2.362889 CCCATGGTGAAGGTGGCC 60.363 66.667 11.73 0.00 0.00 5.36
1741 1859 1.474478 TCCTCTTCATCACGAGCTCAC 59.526 52.381 15.40 0.00 0.00 3.51
1888 2006 3.325870 CCGCGCATCTATTCAGGATTTA 58.674 45.455 8.75 0.00 0.00 1.40
1910 2028 0.034186 GGTCATCTTGATGGGTGCCA 60.034 55.000 10.29 0.00 38.19 4.92
1950 2068 5.047164 TCACCTTCATTGCAATACATTTGCT 60.047 36.000 12.53 0.00 45.13 3.91
2144 2274 2.871096 TTAAAGGCTCGGTGGATGTT 57.129 45.000 0.00 0.00 0.00 2.71
2147 2277 1.201429 AAGGCTCGGTGGATGTTCCT 61.201 55.000 0.00 0.00 37.46 3.36
2201 2331 3.243704 TGAAACCCAAAGGCATTTTCTCG 60.244 43.478 0.00 0.00 36.11 4.04
2207 2337 1.635663 AAGGCATTTTCTCGGTCGCG 61.636 55.000 0.00 0.00 0.00 5.87
2210 2340 2.047655 ATTTTCTCGGTCGCGCCA 60.048 55.556 17.57 0.00 36.97 5.69
2289 2419 2.338500 GAGAGGTAACCACTTTGCTCG 58.662 52.381 0.00 0.00 37.17 5.03
2297 2427 2.927028 ACCACTTTGCTCGGTAGTTTT 58.073 42.857 0.00 0.00 0.00 2.43
2442 2573 6.240549 AGGACGATCAAAGTTAATGATCCT 57.759 37.500 10.58 3.23 46.74 3.24
2478 2609 4.322499 GGGATCACGATATACCAAACGGAT 60.322 45.833 0.00 0.00 0.00 4.18
2652 2783 5.710099 TGTTCAACATTTTCCCTATCCTGAC 59.290 40.000 0.00 0.00 0.00 3.51
2666 2797 9.268282 TCCCTATCCTGACCTAATAATGTAATC 57.732 37.037 0.00 0.00 0.00 1.75
2915 3046 8.065557 GTCTTTCCATTTTGAAGACATTTGTC 57.934 34.615 9.80 2.41 45.30 3.18
2953 3084 8.051901 ACTACTAAATGTGCCTTGTATTTTCC 57.948 34.615 0.00 0.00 0.00 3.13
2960 3091 4.038642 TGTGCCTTGTATTTTCCTTTCCAC 59.961 41.667 0.00 0.00 0.00 4.02
3055 3186 0.469494 TCACATGCTCAGGTGTGTGT 59.531 50.000 13.33 0.00 44.55 3.72
3056 3187 0.589708 CACATGCTCAGGTGTGTGTG 59.410 55.000 6.51 0.00 40.54 3.82
3057 3188 1.168407 ACATGCTCAGGTGTGTGTGC 61.168 55.000 0.00 0.00 37.44 4.57
3059 3190 0.466007 ATGCTCAGGTGTGTGTGCAA 60.466 50.000 4.87 0.00 46.70 4.08
3062 3193 1.093972 CTCAGGTGTGTGTGCAAACA 58.906 50.000 5.33 5.33 34.53 2.83
3111 3251 5.520288 CGACAAGCACTGTATTAACTGCTAT 59.480 40.000 0.00 0.00 36.43 2.97
3236 3376 8.888579 ATGAGATGAACCGGTTACTTAATAAG 57.111 34.615 22.33 0.00 0.00 1.73
3270 3410 3.442273 GGTCAGTGTTGGTGAGAAAACAA 59.558 43.478 0.00 0.00 37.99 2.83
3277 3420 8.783093 CAGTGTTGGTGAGAAAACAATAGATAA 58.217 33.333 0.00 0.00 37.99 1.75
3278 3421 9.520515 AGTGTTGGTGAGAAAACAATAGATAAT 57.479 29.630 0.00 0.00 37.99 1.28
3303 3447 0.674895 AAGCACTGCGTGAGGATTCC 60.675 55.000 11.94 0.00 35.23 3.01
3304 3448 1.375908 GCACTGCGTGAGGATTCCA 60.376 57.895 5.29 0.00 35.23 3.53
3308 3452 3.270027 CACTGCGTGAGGATTCCATTTA 58.730 45.455 5.29 0.00 35.23 1.40
3338 3485 1.159713 TTGCTGAAGACGCAGGTGTG 61.160 55.000 0.00 0.00 38.80 3.82
3347 3494 1.296392 CGCAGGTGTGGGATTGAGA 59.704 57.895 0.00 0.00 38.96 3.27
3364 3511 6.238593 GGATTGAGATTGGTTCATAGACAAGC 60.239 42.308 0.00 0.00 0.00 4.01
3371 3518 2.239907 GGTTCATAGACAAGCCCCTCTT 59.760 50.000 0.00 0.00 34.78 2.85
3388 3538 4.944317 CCCTCTTGAACAGGAAATCTTACC 59.056 45.833 0.00 0.00 31.91 2.85
3415 3565 4.916983 TTTGGTGAAGACAATTCCTGTG 57.083 40.909 0.00 0.00 38.84 3.66
3416 3566 3.576078 TGGTGAAGACAATTCCTGTGT 57.424 42.857 0.00 0.00 38.84 3.72
3419 3569 3.499918 GGTGAAGACAATTCCTGTGTCAG 59.500 47.826 7.26 0.00 46.44 3.51
3424 3574 2.554032 GACAATTCCTGTGTCAGTTGGG 59.446 50.000 0.00 0.00 44.00 4.12
3427 3577 0.108585 TTCCTGTGTCAGTTGGGCTC 59.891 55.000 0.00 0.00 0.00 4.70
3480 3630 8.984891 TTGCAAGGAAAATATTGTACATTCTG 57.015 30.769 0.00 0.00 0.00 3.02
3485 3635 9.699410 AAGGAAAATATTGTACATTCTGATGGA 57.301 29.630 0.00 0.00 37.60 3.41
3499 3649 8.099537 ACATTCTGATGGATCTATGGTGTTATC 58.900 37.037 0.00 0.00 37.60 1.75
3505 3655 6.190954 TGGATCTATGGTGTTATCGTATCG 57.809 41.667 0.00 0.00 0.00 2.92
3519 3669 7.762615 TGTTATCGTATCGAAAGGAAACTGATT 59.237 33.333 0.00 0.00 39.99 2.57
3539 3691 8.037758 ACTGATTTTGTCACTATTAGGACAGAG 58.962 37.037 12.03 8.72 44.12 3.35
3544 3696 6.299805 TGTCACTATTAGGACAGAGCAAAT 57.700 37.500 9.57 0.00 39.00 2.32
3614 3767 5.127682 ACTGAACTTCCAAAATTGCTGAAGT 59.872 36.000 10.24 10.24 46.88 3.01
3617 3770 7.370383 TGAACTTCCAAAATTGCTGAAGTATC 58.630 34.615 14.18 13.54 44.84 2.24
3641 3794 6.542370 TCTGGTCTCTTACTTTCTTTGTTTGG 59.458 38.462 0.00 0.00 0.00 3.28
3653 3806 7.178274 ACTTTCTTTGTTTGGGTATATGCATCA 59.822 33.333 0.19 0.00 0.00 3.07
3660 3813 2.568956 TGGGTATATGCATCAGAGGAGC 59.431 50.000 0.19 0.00 0.00 4.70
3684 3837 3.667087 TTTTTGAGATGCCGCGCT 58.333 50.000 5.56 0.00 0.00 5.92
3688 3841 1.911293 TTTGAGATGCCGCGCTTGAC 61.911 55.000 5.56 0.00 0.00 3.18
3694 3847 1.985447 ATGCCGCGCTTGACATCTTG 61.985 55.000 5.56 0.00 0.00 3.02
3726 3879 1.550327 AGAGAGTTCATGGACGAGCA 58.450 50.000 0.00 0.00 0.00 4.26
3763 3916 1.622811 GGGATGTATCTCTGCTGAGGG 59.377 57.143 19.23 0.00 40.58 4.30
3782 3935 0.321122 GAGTGGTGGTGGAGCAAGAG 60.321 60.000 0.00 0.00 32.64 2.85
3861 4020 6.575162 TCTATTTTCCTTCCAAACTTGAGC 57.425 37.500 0.00 0.00 0.00 4.26
3864 4023 2.169832 TCCTTCCAAACTTGAGCTCG 57.830 50.000 9.64 0.00 0.00 5.03
3872 4031 1.959042 AACTTGAGCTCGCCCATATG 58.041 50.000 9.64 0.00 0.00 1.78
3876 4035 2.462456 TGAGCTCGCCCATATGATTC 57.538 50.000 9.64 0.00 0.00 2.52
3891 4050 1.132588 GATTCGCATCGACTAGTGGC 58.867 55.000 0.00 0.00 34.89 5.01
3899 4058 0.669619 TCGACTAGTGGCGTGTTTGA 59.330 50.000 0.00 0.00 0.00 2.69
3906 4065 0.725784 GTGGCGTGTTTGATTGCTCG 60.726 55.000 0.00 0.00 0.00 5.03
3910 4069 1.967762 CGTGTTTGATTGCTCGCATT 58.032 45.000 0.00 0.00 0.00 3.56
3925 4084 1.135402 CGCATTAACTCCAAACAGGCC 60.135 52.381 0.00 0.00 37.29 5.19
3939 4098 1.074775 AGGCCGAGTGGATGCAAAA 59.925 52.632 0.00 0.00 37.49 2.44
3965 4124 2.490328 AACATGTTTGGTTGCTCACG 57.510 45.000 4.92 0.00 0.00 4.35
3966 4125 0.030638 ACATGTTTGGTTGCTCACGC 59.969 50.000 0.00 0.00 0.00 5.34
3967 4126 0.311790 CATGTTTGGTTGCTCACGCT 59.688 50.000 0.00 0.00 36.97 5.07
3968 4127 0.311790 ATGTTTGGTTGCTCACGCTG 59.688 50.000 0.00 0.00 36.97 5.18
3969 4128 1.008538 GTTTGGTTGCTCACGCTGG 60.009 57.895 0.00 0.00 36.97 4.85
3970 4129 1.153066 TTTGGTTGCTCACGCTGGA 60.153 52.632 0.00 0.00 36.97 3.86
3983 4142 2.821366 CTGGACGCTGACCCATGC 60.821 66.667 0.00 0.00 0.00 4.06
3985 4144 2.512515 GGACGCTGACCCATGCTC 60.513 66.667 0.00 0.00 0.00 4.26
3990 4149 0.529337 CGCTGACCCATGCTCTACTG 60.529 60.000 0.00 0.00 0.00 2.74
3993 4152 2.355108 GCTGACCCATGCTCTACTGAAA 60.355 50.000 0.00 0.00 0.00 2.69
3995 4154 2.284190 GACCCATGCTCTACTGAAAGC 58.716 52.381 0.00 0.00 37.60 3.51
3996 4155 1.293924 CCCATGCTCTACTGAAAGCG 58.706 55.000 0.00 0.00 41.51 4.68
3998 4157 0.654683 CATGCTCTACTGAAAGCGGC 59.345 55.000 0.00 0.00 41.51 6.53
4002 4161 1.069358 GCTCTACTGAAAGCGGCCTAT 59.931 52.381 0.00 0.00 37.60 2.57
4005 4164 4.561734 GCTCTACTGAAAGCGGCCTATAAT 60.562 45.833 0.00 0.00 37.60 1.28
4020 4180 3.848975 CCTATAATCTGGCTCTGGGGAAT 59.151 47.826 0.00 0.00 0.00 3.01
4029 4189 1.680207 GCTCTGGGGAATGCTTGAATC 59.320 52.381 0.00 0.00 0.00 2.52
4031 4191 1.027357 CTGGGGAATGCTTGAATCCG 58.973 55.000 0.00 0.00 33.90 4.18
4032 4192 1.037030 TGGGGAATGCTTGAATCCGC 61.037 55.000 0.00 0.00 44.12 5.54
4039 4199 0.239879 TGCTTGAATCCGCGGTTTTC 59.760 50.000 27.15 26.54 0.00 2.29
4040 4200 0.239879 GCTTGAATCCGCGGTTTTCA 59.760 50.000 29.46 29.46 0.00 2.69
4041 4201 1.135402 GCTTGAATCCGCGGTTTTCAT 60.135 47.619 31.74 16.49 0.00 2.57
4042 4202 2.096819 GCTTGAATCCGCGGTTTTCATA 59.903 45.455 31.74 23.97 0.00 2.15
4043 4203 3.788797 GCTTGAATCCGCGGTTTTCATAG 60.789 47.826 31.74 28.87 0.00 2.23
4044 4204 3.254470 TGAATCCGCGGTTTTCATAGA 57.746 42.857 29.46 15.49 0.00 1.98
4045 4205 3.194861 TGAATCCGCGGTTTTCATAGAG 58.805 45.455 29.46 3.65 0.00 2.43
4046 4206 1.583054 ATCCGCGGTTTTCATAGAGC 58.417 50.000 27.15 0.00 0.00 4.09
4047 4207 0.461339 TCCGCGGTTTTCATAGAGCC 60.461 55.000 27.15 0.00 0.00 4.70
4048 4208 0.742990 CCGCGGTTTTCATAGAGCCA 60.743 55.000 19.50 0.00 0.00 4.75
4049 4209 1.083489 CGCGGTTTTCATAGAGCCAA 58.917 50.000 0.00 0.00 0.00 4.52
4050 4210 1.062587 CGCGGTTTTCATAGAGCCAAG 59.937 52.381 0.00 0.00 0.00 3.61
4051 4211 2.084546 GCGGTTTTCATAGAGCCAAGT 58.915 47.619 0.00 0.00 0.00 3.16
4052 4212 2.488153 GCGGTTTTCATAGAGCCAAGTT 59.512 45.455 0.00 0.00 0.00 2.66
4053 4213 3.670627 GCGGTTTTCATAGAGCCAAGTTG 60.671 47.826 0.00 0.00 0.00 3.16
4054 4214 3.751175 CGGTTTTCATAGAGCCAAGTTGA 59.249 43.478 3.87 0.00 0.00 3.18
4055 4215 4.142816 CGGTTTTCATAGAGCCAAGTTGAG 60.143 45.833 3.87 0.00 0.00 3.02
4056 4216 4.156739 GGTTTTCATAGAGCCAAGTTGAGG 59.843 45.833 3.87 0.00 0.00 3.86
4057 4217 4.908601 TTTCATAGAGCCAAGTTGAGGA 57.091 40.909 3.87 0.00 0.00 3.71
4058 4218 4.478206 TTCATAGAGCCAAGTTGAGGAG 57.522 45.455 3.87 0.00 0.00 3.69
4059 4219 3.713003 TCATAGAGCCAAGTTGAGGAGA 58.287 45.455 3.87 0.00 0.00 3.71
4060 4220 3.703556 TCATAGAGCCAAGTTGAGGAGAG 59.296 47.826 3.87 0.00 0.00 3.20
4061 4221 0.612744 AGAGCCAAGTTGAGGAGAGC 59.387 55.000 3.87 0.00 0.00 4.09
4062 4222 0.739112 GAGCCAAGTTGAGGAGAGCG 60.739 60.000 3.87 0.00 0.00 5.03
4063 4223 2.394563 GCCAAGTTGAGGAGAGCGC 61.395 63.158 3.87 0.00 0.00 5.92
4064 4224 1.004560 CCAAGTTGAGGAGAGCGCA 60.005 57.895 11.47 0.00 0.00 6.09
4065 4225 0.603707 CCAAGTTGAGGAGAGCGCAA 60.604 55.000 11.47 0.00 0.00 4.85
4066 4226 0.795085 CAAGTTGAGGAGAGCGCAAG 59.205 55.000 11.47 0.00 43.44 4.01
4067 4227 0.321122 AAGTTGAGGAGAGCGCAAGG 60.321 55.000 11.47 0.00 38.28 3.61
4068 4228 1.743252 GTTGAGGAGAGCGCAAGGG 60.743 63.158 11.47 0.00 38.28 3.95
4069 4229 2.959484 TTGAGGAGAGCGCAAGGGG 61.959 63.158 11.47 0.00 38.28 4.79
4070 4230 4.168291 GAGGAGAGCGCAAGGGGG 62.168 72.222 11.47 0.00 38.28 5.40
4084 4244 4.507879 GGGGGAACGACGTACATG 57.492 61.111 0.00 0.00 0.00 3.21
4085 4245 1.153509 GGGGGAACGACGTACATGG 60.154 63.158 0.00 0.00 0.00 3.66
4086 4246 1.153509 GGGGAACGACGTACATGGG 60.154 63.158 0.00 0.00 0.00 4.00
4087 4247 1.153509 GGGAACGACGTACATGGGG 60.154 63.158 0.00 0.00 0.00 4.96
4088 4248 1.812507 GGAACGACGTACATGGGGC 60.813 63.158 0.00 0.00 0.00 5.80
4089 4249 1.217244 GAACGACGTACATGGGGCT 59.783 57.895 0.00 0.00 0.00 5.19
4090 4250 1.079405 AACGACGTACATGGGGCTG 60.079 57.895 0.00 0.00 0.00 4.85
4091 4251 2.202878 CGACGTACATGGGGCTGG 60.203 66.667 0.00 0.00 0.00 4.85
4092 4252 2.189521 GACGTACATGGGGCTGGG 59.810 66.667 0.00 0.00 0.00 4.45
4093 4253 3.400599 GACGTACATGGGGCTGGGG 62.401 68.421 0.00 0.00 0.00 4.96
4094 4254 4.189580 CGTACATGGGGCTGGGGG 62.190 72.222 0.00 0.00 0.00 5.40
4095 4255 2.694616 GTACATGGGGCTGGGGGA 60.695 66.667 0.00 0.00 0.00 4.81
4096 4256 2.368192 TACATGGGGCTGGGGGAG 60.368 66.667 0.00 0.00 0.00 4.30
4105 4265 4.517934 CTGGGGGAGCAGGCATGG 62.518 72.222 0.00 0.00 0.00 3.66
4107 4267 4.201122 GGGGGAGCAGGCATGGAG 62.201 72.222 0.00 0.00 0.00 3.86
4108 4268 3.092511 GGGGAGCAGGCATGGAGA 61.093 66.667 0.00 0.00 0.00 3.71
4109 4269 2.459086 GGGGAGCAGGCATGGAGAT 61.459 63.158 0.00 0.00 0.00 2.75
4110 4270 1.228184 GGGAGCAGGCATGGAGATG 60.228 63.158 0.00 0.00 0.00 2.90
4111 4271 1.228184 GGAGCAGGCATGGAGATGG 60.228 63.158 0.00 0.00 0.00 3.51
4112 4272 1.530771 GAGCAGGCATGGAGATGGT 59.469 57.895 0.00 0.00 0.00 3.55
4113 4273 0.818445 GAGCAGGCATGGAGATGGTG 60.818 60.000 0.00 0.00 0.00 4.17
4114 4274 1.826921 GCAGGCATGGAGATGGTGG 60.827 63.158 0.00 0.00 0.00 4.61
4115 4275 1.152819 CAGGCATGGAGATGGTGGG 60.153 63.158 0.00 0.00 0.00 4.61
4116 4276 2.520260 GGCATGGAGATGGTGGGC 60.520 66.667 0.00 0.00 0.00 5.36
4117 4277 2.903855 GCATGGAGATGGTGGGCG 60.904 66.667 0.00 0.00 0.00 6.13
4118 4278 2.910360 CATGGAGATGGTGGGCGA 59.090 61.111 0.00 0.00 0.00 5.54
4119 4279 1.524621 CATGGAGATGGTGGGCGAC 60.525 63.158 0.00 0.00 0.00 5.19
4120 4280 3.094062 ATGGAGATGGTGGGCGACG 62.094 63.158 0.00 0.00 0.00 5.12
4121 4281 3.458163 GGAGATGGTGGGCGACGA 61.458 66.667 0.00 0.00 0.00 4.20
4122 4282 2.577059 GAGATGGTGGGCGACGAA 59.423 61.111 0.00 0.00 0.00 3.85
4123 4283 1.144057 GAGATGGTGGGCGACGAAT 59.856 57.895 0.00 0.00 0.00 3.34
4124 4284 0.387929 GAGATGGTGGGCGACGAATA 59.612 55.000 0.00 0.00 0.00 1.75
4125 4285 1.000955 GAGATGGTGGGCGACGAATAT 59.999 52.381 0.00 0.00 0.00 1.28
4126 4286 1.000955 AGATGGTGGGCGACGAATATC 59.999 52.381 0.00 0.00 0.00 1.63
4127 4287 1.000955 GATGGTGGGCGACGAATATCT 59.999 52.381 0.00 0.00 0.00 1.98
4128 4288 0.104120 TGGTGGGCGACGAATATCTG 59.896 55.000 0.00 0.00 0.00 2.90
4129 4289 1.222115 GGTGGGCGACGAATATCTGC 61.222 60.000 0.00 0.00 0.00 4.26
4130 4290 0.249489 GTGGGCGACGAATATCTGCT 60.249 55.000 0.00 0.00 0.00 4.24
4131 4291 0.249447 TGGGCGACGAATATCTGCTG 60.249 55.000 0.00 0.00 0.00 4.41
4132 4292 0.946221 GGGCGACGAATATCTGCTGG 60.946 60.000 0.00 0.00 0.00 4.85
4133 4293 0.946221 GGCGACGAATATCTGCTGGG 60.946 60.000 0.00 0.00 0.00 4.45
4134 4294 0.946221 GCGACGAATATCTGCTGGGG 60.946 60.000 0.00 0.00 0.00 4.96
4135 4295 0.946221 CGACGAATATCTGCTGGGGC 60.946 60.000 0.00 0.00 39.26 5.80
4136 4296 0.946221 GACGAATATCTGCTGGGGCG 60.946 60.000 0.00 0.00 42.25 6.13
4137 4297 1.669115 CGAATATCTGCTGGGGCGG 60.669 63.158 0.00 0.00 45.61 6.13
4138 4298 1.451936 GAATATCTGCTGGGGCGGT 59.548 57.895 0.00 0.00 44.62 5.68
4139 4299 0.685097 GAATATCTGCTGGGGCGGTA 59.315 55.000 0.00 0.00 44.62 4.02
4140 4300 1.279271 GAATATCTGCTGGGGCGGTAT 59.721 52.381 0.00 0.00 44.62 2.73
4141 4301 2.247699 ATATCTGCTGGGGCGGTATA 57.752 50.000 0.00 0.00 44.62 1.47
4142 4302 1.557099 TATCTGCTGGGGCGGTATAG 58.443 55.000 0.00 0.00 44.62 1.31
4143 4303 1.831652 ATCTGCTGGGGCGGTATAGC 61.832 60.000 0.00 0.00 44.62 2.97
4144 4304 3.865929 CTGCTGGGGCGGTATAGCG 62.866 68.421 19.61 19.61 42.25 4.26
4151 4311 3.748021 GGCGGTATAGCGCAAAATC 57.252 52.632 39.89 24.19 38.18 2.17
4152 4312 1.226746 GGCGGTATAGCGCAAAATCT 58.773 50.000 39.89 0.00 38.18 2.40
4153 4313 2.409975 GGCGGTATAGCGCAAAATCTA 58.590 47.619 39.89 0.00 38.18 1.98
4154 4314 2.157085 GGCGGTATAGCGCAAAATCTAC 59.843 50.000 39.89 22.31 38.18 2.59
4155 4315 3.057734 GCGGTATAGCGCAAAATCTACT 58.942 45.455 36.61 0.00 0.00 2.57
4156 4316 3.121445 GCGGTATAGCGCAAAATCTACTC 59.879 47.826 36.61 9.06 0.00 2.59
4157 4317 3.673809 CGGTATAGCGCAAAATCTACTCC 59.326 47.826 11.47 0.00 0.00 3.85
4158 4318 3.995048 GGTATAGCGCAAAATCTACTCCC 59.005 47.826 11.47 0.00 0.00 4.30
4159 4319 3.838244 ATAGCGCAAAATCTACTCCCA 57.162 42.857 11.47 0.00 0.00 4.37
4160 4320 1.739067 AGCGCAAAATCTACTCCCAC 58.261 50.000 11.47 0.00 0.00 4.61
4161 4321 0.733150 GCGCAAAATCTACTCCCACC 59.267 55.000 0.30 0.00 0.00 4.61
4162 4322 1.006832 CGCAAAATCTACTCCCACCG 58.993 55.000 0.00 0.00 0.00 4.94
4163 4323 0.733150 GCAAAATCTACTCCCACCGC 59.267 55.000 0.00 0.00 0.00 5.68
4164 4324 1.379527 CAAAATCTACTCCCACCGCC 58.620 55.000 0.00 0.00 0.00 6.13
4165 4325 0.255033 AAAATCTACTCCCACCGCCC 59.745 55.000 0.00 0.00 0.00 6.13
4166 4326 0.620700 AAATCTACTCCCACCGCCCT 60.621 55.000 0.00 0.00 0.00 5.19
4167 4327 0.620700 AATCTACTCCCACCGCCCTT 60.621 55.000 0.00 0.00 0.00 3.95
4168 4328 0.620700 ATCTACTCCCACCGCCCTTT 60.621 55.000 0.00 0.00 0.00 3.11
4169 4329 0.838987 TCTACTCCCACCGCCCTTTT 60.839 55.000 0.00 0.00 0.00 2.27
4170 4330 0.906775 CTACTCCCACCGCCCTTTTA 59.093 55.000 0.00 0.00 0.00 1.52
4171 4331 0.906775 TACTCCCACCGCCCTTTTAG 59.093 55.000 0.00 0.00 0.00 1.85
4172 4332 1.749258 CTCCCACCGCCCTTTTAGC 60.749 63.158 0.00 0.00 0.00 3.09
4173 4333 2.198304 CTCCCACCGCCCTTTTAGCT 62.198 60.000 0.00 0.00 0.00 3.32
4174 4334 2.046285 CCCACCGCCCTTTTAGCTG 61.046 63.158 0.00 0.00 0.00 4.24
4175 4335 2.700773 CCACCGCCCTTTTAGCTGC 61.701 63.158 0.00 0.00 0.00 5.25
4176 4336 1.675641 CACCGCCCTTTTAGCTGCT 60.676 57.895 7.57 7.57 0.00 4.24
4177 4337 1.377333 ACCGCCCTTTTAGCTGCTC 60.377 57.895 4.91 0.00 0.00 4.26
4178 4338 1.377202 CCGCCCTTTTAGCTGCTCA 60.377 57.895 4.91 0.00 0.00 4.26
4179 4339 1.648467 CCGCCCTTTTAGCTGCTCAC 61.648 60.000 4.91 0.00 0.00 3.51
4180 4340 1.648467 CGCCCTTTTAGCTGCTCACC 61.648 60.000 4.91 0.00 0.00 4.02
4181 4341 0.322906 GCCCTTTTAGCTGCTCACCT 60.323 55.000 4.91 0.00 0.00 4.00
4182 4342 1.743996 CCCTTTTAGCTGCTCACCTC 58.256 55.000 4.91 0.00 0.00 3.85
4183 4343 1.280421 CCCTTTTAGCTGCTCACCTCT 59.720 52.381 4.91 0.00 0.00 3.69
4184 4344 2.501723 CCCTTTTAGCTGCTCACCTCTA 59.498 50.000 4.91 0.00 0.00 2.43
4185 4345 3.431486 CCCTTTTAGCTGCTCACCTCTAG 60.431 52.174 4.91 0.00 0.00 2.43
4186 4346 2.969628 TTTAGCTGCTCACCTCTAGC 57.030 50.000 4.91 0.00 40.50 3.42
4192 4352 2.479566 TGCTCACCTCTAGCAAAAGG 57.520 50.000 0.00 0.00 46.57 3.11
4193 4353 1.977854 TGCTCACCTCTAGCAAAAGGA 59.022 47.619 2.31 0.00 46.57 3.36
4194 4354 2.289694 TGCTCACCTCTAGCAAAAGGAC 60.290 50.000 2.31 0.00 46.57 3.85
4195 4355 2.289694 GCTCACCTCTAGCAAAAGGACA 60.290 50.000 2.31 0.00 39.83 4.02
4196 4356 3.807209 GCTCACCTCTAGCAAAAGGACAA 60.807 47.826 2.31 0.00 39.83 3.18
4197 4357 4.389374 CTCACCTCTAGCAAAAGGACAAA 58.611 43.478 2.31 0.00 36.46 2.83
4198 4358 4.985538 TCACCTCTAGCAAAAGGACAAAT 58.014 39.130 2.31 0.00 36.46 2.32
4199 4359 5.003804 TCACCTCTAGCAAAAGGACAAATC 58.996 41.667 2.31 0.00 36.46 2.17
4200 4360 4.156739 CACCTCTAGCAAAAGGACAAATCC 59.843 45.833 2.31 0.00 46.69 3.01
4214 4374 5.393962 GGACAAATCCAATCTCAGTTTTCG 58.606 41.667 0.00 0.00 45.47 3.46
4215 4375 4.798574 ACAAATCCAATCTCAGTTTTCGC 58.201 39.130 0.00 0.00 0.00 4.70
4216 4376 4.278170 ACAAATCCAATCTCAGTTTTCGCA 59.722 37.500 0.00 0.00 0.00 5.10
4217 4377 4.425577 AATCCAATCTCAGTTTTCGCAC 57.574 40.909 0.00 0.00 0.00 5.34
4218 4378 2.151202 TCCAATCTCAGTTTTCGCACC 58.849 47.619 0.00 0.00 0.00 5.01
4219 4379 1.135972 CCAATCTCAGTTTTCGCACCG 60.136 52.381 0.00 0.00 0.00 4.94
4220 4380 1.135972 CAATCTCAGTTTTCGCACCGG 60.136 52.381 0.00 0.00 0.00 5.28
4221 4381 0.320374 ATCTCAGTTTTCGCACCGGA 59.680 50.000 9.46 0.00 0.00 5.14
4222 4382 0.105224 TCTCAGTTTTCGCACCGGAA 59.895 50.000 9.46 0.00 0.00 4.30
4223 4383 0.512952 CTCAGTTTTCGCACCGGAAG 59.487 55.000 9.46 0.15 0.00 3.46
4224 4384 1.082104 CAGTTTTCGCACCGGAAGC 60.082 57.895 9.46 11.47 0.00 3.86
4232 4392 4.735132 CACCGGAAGCGAAGGCGA 62.735 66.667 9.46 0.00 46.35 5.54
4233 4393 4.736896 ACCGGAAGCGAAGGCGAC 62.737 66.667 9.46 0.00 46.35 5.19
4234 4394 4.436998 CCGGAAGCGAAGGCGACT 62.437 66.667 0.00 0.00 46.35 4.18
4245 4405 3.498502 AGGCGACTTAGATCTCCGT 57.501 52.632 0.00 0.00 37.44 4.69
4246 4406 1.765230 AGGCGACTTAGATCTCCGTT 58.235 50.000 0.00 0.00 37.44 4.44
4247 4407 2.928334 AGGCGACTTAGATCTCCGTTA 58.072 47.619 0.00 0.00 37.44 3.18
4248 4408 2.617774 AGGCGACTTAGATCTCCGTTAC 59.382 50.000 0.00 0.00 37.44 2.50
4249 4409 2.287487 GGCGACTTAGATCTCCGTTACC 60.287 54.545 0.00 0.10 0.00 2.85
4250 4410 2.601741 GCGACTTAGATCTCCGTTACCG 60.602 54.545 0.00 0.00 0.00 4.02
4268 4428 2.936032 GGAGGTGCTCCCCCACTT 60.936 66.667 0.00 0.00 44.36 3.16
4269 4429 2.539081 GGAGGTGCTCCCCCACTTT 61.539 63.158 0.00 0.00 44.36 2.66
4270 4430 1.303643 GAGGTGCTCCCCCACTTTG 60.304 63.158 0.00 0.00 36.03 2.77
4271 4431 2.069165 GAGGTGCTCCCCCACTTTGT 62.069 60.000 0.00 0.00 36.03 2.83
4272 4432 1.603739 GGTGCTCCCCCACTTTGTC 60.604 63.158 0.00 0.00 36.03 3.18
4273 4433 1.150536 GTGCTCCCCCACTTTGTCA 59.849 57.895 0.00 0.00 33.02 3.58
4274 4434 0.890996 GTGCTCCCCCACTTTGTCAG 60.891 60.000 0.00 0.00 33.02 3.51
4275 4435 1.973812 GCTCCCCCACTTTGTCAGC 60.974 63.158 0.00 0.00 0.00 4.26
4276 4436 1.763770 CTCCCCCACTTTGTCAGCT 59.236 57.895 0.00 0.00 0.00 4.24
4277 4437 0.607489 CTCCCCCACTTTGTCAGCTG 60.607 60.000 7.63 7.63 0.00 4.24
4278 4438 2.270986 CCCCCACTTTGTCAGCTGC 61.271 63.158 9.47 4.92 0.00 5.25
4279 4439 2.270986 CCCCACTTTGTCAGCTGCC 61.271 63.158 9.47 0.00 0.00 4.85
4280 4440 2.270986 CCCACTTTGTCAGCTGCCC 61.271 63.158 9.47 2.21 0.00 5.36
4281 4441 2.620112 CCACTTTGTCAGCTGCCCG 61.620 63.158 9.47 0.00 0.00 6.13
4282 4442 1.893808 CACTTTGTCAGCTGCCCGT 60.894 57.895 9.47 0.00 0.00 5.28
4283 4443 1.598130 ACTTTGTCAGCTGCCCGTC 60.598 57.895 9.47 0.00 0.00 4.79
4284 4444 2.281484 TTTGTCAGCTGCCCGTCC 60.281 61.111 9.47 0.00 0.00 4.79
4285 4445 3.842925 TTTGTCAGCTGCCCGTCCC 62.843 63.158 9.47 0.00 0.00 4.46
4289 4449 4.785453 CAGCTGCCCGTCCCCTTC 62.785 72.222 0.00 0.00 0.00 3.46
4292 4452 4.452733 CTGCCCGTCCCCTTCGTC 62.453 72.222 0.00 0.00 0.00 4.20
4294 4454 4.144703 GCCCGTCCCCTTCGTCTC 62.145 72.222 0.00 0.00 0.00 3.36
4295 4455 3.459063 CCCGTCCCCTTCGTCTCC 61.459 72.222 0.00 0.00 0.00 3.71
4296 4456 3.823330 CCGTCCCCTTCGTCTCCG 61.823 72.222 0.00 0.00 0.00 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 1.873591 GCGACCACTTCACTTGTGATT 59.126 47.619 4.18 0.00 37.60 2.57
25 26 1.478510 AGTTGACGGTGCTAGATGGAG 59.521 52.381 0.00 0.00 0.00 3.86
39 40 2.096496 CCATCGAATGGCTTCAGTTGAC 59.904 50.000 0.00 0.00 44.70 3.18
77 78 9.460019 CCTACCTACAAGGGTATACTTACTATC 57.540 40.741 2.25 0.00 40.58 2.08
107 108 7.063308 GCCAAATATCGATGTTCAATTTGTGTT 59.937 33.333 20.87 0.00 36.34 3.32
124 125 1.334869 CTCAAGTGGCCGCCAAATATC 59.665 52.381 15.39 0.51 34.18 1.63
155 156 7.663081 TGTCAGAGAAATTGCTTAGTTGAGAAT 59.337 33.333 0.00 0.00 0.00 2.40
160 161 6.551385 AGTGTCAGAGAAATTGCTTAGTTG 57.449 37.500 0.00 0.00 0.00 3.16
162 163 5.049129 GCAAGTGTCAGAGAAATTGCTTAGT 60.049 40.000 9.82 0.00 39.82 2.24
163 164 5.388944 GCAAGTGTCAGAGAAATTGCTTAG 58.611 41.667 9.82 0.00 39.82 2.18
164 165 5.362556 GCAAGTGTCAGAGAAATTGCTTA 57.637 39.130 9.82 0.00 39.82 3.09
177 178 0.106769 TGGAGCCAAAGCAAGTGTCA 60.107 50.000 0.00 0.00 43.56 3.58
181 182 2.318908 TGAATTGGAGCCAAAGCAAGT 58.681 42.857 5.98 0.00 43.56 3.16
184 185 2.250031 ACATGAATTGGAGCCAAAGCA 58.750 42.857 5.98 7.80 43.56 3.91
189 190 4.996758 CGACATATACATGAATTGGAGCCA 59.003 41.667 0.00 0.00 35.96 4.75
193 194 7.566760 AAAAGCGACATATACATGAATTGGA 57.433 32.000 0.00 0.00 35.96 3.53
201 214 9.764363 TCTATCAAGAAAAAGCGACATATACAT 57.236 29.630 0.00 0.00 0.00 2.29
211 224 6.036517 AGCACATAGTCTATCAAGAAAAAGCG 59.963 38.462 0.00 0.00 32.16 4.68
303 316 5.136105 GGCTCATTAGACTTGGAATGGAAT 58.864 41.667 0.00 0.00 34.45 3.01
307 320 3.889815 TGGGCTCATTAGACTTGGAATG 58.110 45.455 0.00 0.00 34.89 2.67
342 355 5.188163 TGAGGAATAGGATTCACCGTTTACA 59.812 40.000 1.90 0.00 44.74 2.41
346 359 3.118371 GGTGAGGAATAGGATTCACCGTT 60.118 47.826 6.74 0.00 46.98 4.44
348 361 3.113260 GGTGAGGAATAGGATTCACCG 57.887 52.381 6.74 0.00 46.98 4.94
376 389 2.552315 GTGTGAATGGGTGACAATTCGT 59.448 45.455 5.97 0.00 0.00 3.85
386 399 3.025322 TGTTTCCTTGTGTGAATGGGT 57.975 42.857 0.00 0.00 0.00 4.51
389 402 4.747540 TCGATGTTTCCTTGTGTGAATG 57.252 40.909 0.00 0.00 0.00 2.67
404 417 3.429547 CGATCTCACTTTCCCTTCGATGT 60.430 47.826 0.00 0.00 0.00 3.06
407 420 1.476891 CCGATCTCACTTTCCCTTCGA 59.523 52.381 0.00 0.00 0.00 3.71
409 422 1.657822 GCCGATCTCACTTTCCCTTC 58.342 55.000 0.00 0.00 0.00 3.46
415 428 1.218316 GGTCGGCCGATCTCACTTT 59.782 57.895 33.58 0.00 0.00 2.66
417 430 3.148279 GGGTCGGCCGATCTCACT 61.148 66.667 35.61 0.00 34.97 3.41
425 438 0.600255 CTAGCTAAATGGGTCGGCCG 60.600 60.000 22.12 22.12 34.97 6.13
430 443 4.417426 TTGGTAGCTAGCTAAATGGGTC 57.583 45.455 25.74 11.42 0.00 4.46
441 454 7.394641 AGAAAGAAAAAGGGATTTGGTAGCTAG 59.605 37.037 0.00 0.00 0.00 3.42
453 466 8.547481 AAGGAATGTAAAGAAAGAAAAAGGGA 57.453 30.769 0.00 0.00 0.00 4.20
517 538 7.199766 TGTTAGAACACAAGAATCGCATTTTT 58.800 30.769 0.00 0.00 33.17 1.94
518 539 6.734137 TGTTAGAACACAAGAATCGCATTTT 58.266 32.000 0.00 0.00 33.17 1.82
519 540 6.312399 TGTTAGAACACAAGAATCGCATTT 57.688 33.333 0.00 0.00 33.17 2.32
520 541 5.940192 TGTTAGAACACAAGAATCGCATT 57.060 34.783 0.00 0.00 33.17 3.56
521 542 5.940192 TTGTTAGAACACAAGAATCGCAT 57.060 34.783 0.00 0.00 38.92 4.73
522 543 5.238432 ACATTGTTAGAACACAAGAATCGCA 59.762 36.000 0.00 0.00 40.01 5.10
523 544 5.689819 ACATTGTTAGAACACAAGAATCGC 58.310 37.500 0.00 0.00 40.01 4.58
714 749 7.455641 TTCGGCCAGTCAAGATTTTATTAAA 57.544 32.000 2.24 0.00 0.00 1.52
765 803 2.501223 TTCTCGTGGGCTACAAGGCG 62.501 60.000 0.88 0.00 42.43 5.52
797 905 5.408604 CCGGTGATTTTATTCGGATCCTTAG 59.591 44.000 10.75 0.00 42.94 2.18
828 936 3.201708 AGGTGAGAGGCAAATATCTTGCT 59.798 43.478 16.74 7.75 44.36 3.91
871 979 1.693083 GGATAAGGTGTCGTGCGTGC 61.693 60.000 0.00 0.00 0.00 5.34
872 980 1.410737 CGGATAAGGTGTCGTGCGTG 61.411 60.000 0.00 0.00 0.00 5.34
873 981 1.153901 CGGATAAGGTGTCGTGCGT 60.154 57.895 0.00 0.00 0.00 5.24
874 982 1.876714 CCGGATAAGGTGTCGTGCG 60.877 63.158 0.00 0.00 0.00 5.34
1388 1506 2.069273 CAGAAGGAGTAACAAGCACCG 58.931 52.381 0.00 0.00 0.00 4.94
1399 1517 0.888619 TGTCGCGATTCAGAAGGAGT 59.111 50.000 14.06 0.00 0.00 3.85
1631 1749 3.064987 GAGGAGCGCGAGTAAGCCA 62.065 63.158 12.10 0.00 0.00 4.75
1673 1791 0.178909 TGGGCAATTGGGTGGTGAAT 60.179 50.000 7.72 0.00 0.00 2.57
1706 1824 7.770433 TGATGAAGAGGACATACATACCTTTTG 59.230 37.037 0.00 0.00 33.89 2.44
1741 1859 2.553602 CTCTCCTCTGATGTCCGATCAG 59.446 54.545 6.31 6.31 45.08 2.90
1747 1865 1.885887 CGATCCTCTCCTCTGATGTCC 59.114 57.143 0.00 0.00 0.00 4.02
1888 2006 0.921896 CACCCATCAAGATGACCCCT 59.078 55.000 11.48 0.00 41.20 4.79
1950 2068 2.397044 AGGCAAGAACCCAATTTGGA 57.603 45.000 17.24 0.00 40.96 3.53
2144 2274 3.323691 TGACGAAATTCAGTCCTTGAGGA 59.676 43.478 12.68 0.00 43.08 3.71
2147 2277 4.455533 CCAATGACGAAATTCAGTCCTTGA 59.544 41.667 22.76 7.39 41.94 3.02
2201 2331 1.134694 GAAAACATCTGGCGCGACC 59.865 57.895 10.82 11.50 39.84 4.79
2207 2337 4.156008 ACTTCCGTATTGAAAACATCTGGC 59.844 41.667 0.00 0.00 0.00 4.85
2210 2340 5.556915 TGGACTTCCGTATTGAAAACATCT 58.443 37.500 0.00 0.00 39.43 2.90
2315 2445 7.661968 TGCTTATCTATCAATCTAGTGTCACC 58.338 38.462 0.00 0.00 0.00 4.02
2365 2495 8.620533 AAAAGTGAAAGATCGCTATAAATTGC 57.379 30.769 0.00 0.00 45.53 3.56
2442 2573 2.398588 GTGATCCCACCATACCTCAGA 58.601 52.381 0.00 0.00 37.33 3.27
2478 2609 1.707989 TGTAATGCTGAGAACCCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
2487 2618 5.947228 TTTTCTTCACCTGTAATGCTGAG 57.053 39.130 0.00 0.00 0.00 3.35
2550 2681 6.360681 CGTATAGCTTTTTATTGCCATTCAGC 59.639 38.462 0.00 0.00 0.00 4.26
2915 3046 6.748658 CACATTTAGTAGTTCATGCAACATGG 59.251 38.462 7.66 0.00 37.48 3.66
2953 3084 2.355513 CCTGGATCAGTCTGGTGGAAAG 60.356 54.545 0.00 0.00 0.00 2.62
2960 3091 2.776536 AGGAATTCCTGGATCAGTCTGG 59.223 50.000 26.52 0.00 46.55 3.86
3055 3186 6.428159 ACCATTAAAAAGTTTGTGTGTTTGCA 59.572 30.769 0.00 0.00 0.00 4.08
3056 3187 6.836953 ACCATTAAAAAGTTTGTGTGTTTGC 58.163 32.000 0.00 0.00 0.00 3.68
3057 3188 8.286097 ACAACCATTAAAAAGTTTGTGTGTTTG 58.714 29.630 0.00 0.00 0.00 2.93
3059 3190 7.875554 AGACAACCATTAAAAAGTTTGTGTGTT 59.124 29.630 0.00 0.00 0.00 3.32
3062 3193 7.274686 CGAAGACAACCATTAAAAAGTTTGTGT 59.725 33.333 0.00 0.00 0.00 3.72
3065 3196 7.979115 TCGAAGACAACCATTAAAAAGTTTG 57.021 32.000 0.00 0.00 0.00 2.93
3130 3270 1.473434 GCAGCGCCCATAACTAAGAGT 60.473 52.381 2.29 0.00 0.00 3.24
3173 3313 1.135083 GCTCGATTCGACTTTCCTCCA 60.135 52.381 4.29 0.00 0.00 3.86
3270 3410 7.969536 ACGCAGTGCTTGATTTATTATCTAT 57.030 32.000 14.33 0.00 42.51 1.98
3303 3447 5.840243 TCAGCAATCTCACCCAATAAATG 57.160 39.130 0.00 0.00 0.00 2.32
3304 3448 6.096001 GTCTTCAGCAATCTCACCCAATAAAT 59.904 38.462 0.00 0.00 0.00 1.40
3308 3452 3.350833 GTCTTCAGCAATCTCACCCAAT 58.649 45.455 0.00 0.00 0.00 3.16
3338 3485 5.684704 TGTCTATGAACCAATCTCAATCCC 58.315 41.667 0.00 0.00 0.00 3.85
3347 3494 2.582636 AGGGGCTTGTCTATGAACCAAT 59.417 45.455 0.00 0.00 0.00 3.16
3364 3511 3.728385 AGATTTCCTGTTCAAGAGGGG 57.272 47.619 0.00 0.00 0.00 4.79
3371 3518 9.231297 CAAATAGAAGGTAAGATTTCCTGTTCA 57.769 33.333 0.00 0.00 33.97 3.18
3388 3538 7.175641 ACAGGAATTGTCTTCACCAAATAGAAG 59.824 37.037 0.00 0.00 41.95 2.85
3415 3565 3.334583 TGAATACAGAGCCCAACTGAC 57.665 47.619 0.00 0.00 38.55 3.51
3416 3566 3.519107 TGATGAATACAGAGCCCAACTGA 59.481 43.478 0.00 0.00 38.55 3.41
3419 3569 4.883585 TCAATGATGAATACAGAGCCCAAC 59.116 41.667 0.00 0.00 30.99 3.77
3424 3574 3.501445 GGCCTCAATGATGAATACAGAGC 59.499 47.826 0.00 0.00 34.49 4.09
3427 3577 5.840243 TTTGGCCTCAATGATGAATACAG 57.160 39.130 3.32 0.00 34.49 2.74
3480 3630 6.913132 CGATACGATAACACCATAGATCCATC 59.087 42.308 0.00 0.00 0.00 3.51
3485 3635 7.176165 TCCTTTCGATACGATAACACCATAGAT 59.824 37.037 0.00 0.00 35.23 1.98
3499 3649 6.599437 ACAAAATCAGTTTCCTTTCGATACG 58.401 36.000 0.00 0.00 0.00 3.06
3519 3669 5.738619 TGCTCTGTCCTAATAGTGACAAA 57.261 39.130 11.00 0.94 40.71 2.83
3596 3749 6.071728 ACCAGATACTTCAGCAATTTTGGAAG 60.072 38.462 0.00 0.00 41.83 3.46
3599 3752 5.416952 AGACCAGATACTTCAGCAATTTTGG 59.583 40.000 0.00 0.00 0.00 3.28
3614 3767 9.273016 CAAACAAAGAAAGTAAGAGACCAGATA 57.727 33.333 0.00 0.00 0.00 1.98
3617 3770 6.238759 CCCAAACAAAGAAAGTAAGAGACCAG 60.239 42.308 0.00 0.00 0.00 4.00
3641 3794 3.513119 TGAGCTCCTCTGATGCATATACC 59.487 47.826 12.15 0.00 0.00 2.73
3648 3801 2.328819 AACATGAGCTCCTCTGATGC 57.671 50.000 12.15 0.00 39.62 3.91
3688 3841 6.817641 ACTCTCTTGCTTTAGATGACAAGATG 59.182 38.462 4.90 4.60 45.34 2.90
3694 3847 6.036953 CCATGAACTCTCTTGCTTTAGATGAC 59.963 42.308 0.00 0.00 0.00 3.06
3748 3901 1.686052 CCACTCCCTCAGCAGAGATAC 59.314 57.143 7.84 0.00 44.98 2.24
3752 3905 1.595882 CACCACTCCCTCAGCAGAG 59.404 63.158 0.00 0.00 41.72 3.35
3754 3907 2.219875 ACCACCACTCCCTCAGCAG 61.220 63.158 0.00 0.00 0.00 4.24
3758 3911 1.536418 CTCCACCACCACTCCCTCA 60.536 63.158 0.00 0.00 0.00 3.86
3763 3916 0.321122 CTCTTGCTCCACCACCACTC 60.321 60.000 0.00 0.00 0.00 3.51
3815 3968 0.251916 TATTCTCCCCTTGTGGCACG 59.748 55.000 13.77 0.00 0.00 5.34
3824 3977 7.713704 AGGAAAATAGAACATATTCTCCCCT 57.286 36.000 0.00 0.00 41.63 4.79
3827 3980 8.980481 TGGAAGGAAAATAGAACATATTCTCC 57.020 34.615 0.00 0.00 41.63 3.71
3861 4020 1.662629 GATGCGAATCATATGGGCGAG 59.337 52.381 14.08 0.96 35.05 5.03
3864 4023 1.394917 GTCGATGCGAATCATATGGGC 59.605 52.381 3.80 2.76 37.72 5.36
3872 4031 1.132588 GCCACTAGTCGATGCGAATC 58.867 55.000 0.00 0.00 37.72 2.52
3891 4050 1.967762 AATGCGAGCAATCAAACACG 58.032 45.000 0.57 0.00 0.00 4.49
3899 4058 3.505680 TGTTTGGAGTTAATGCGAGCAAT 59.494 39.130 0.57 0.00 0.00 3.56
3906 4065 1.135402 CGGCCTGTTTGGAGTTAATGC 60.135 52.381 0.00 0.00 38.35 3.56
3910 4069 1.053424 ACTCGGCCTGTTTGGAGTTA 58.947 50.000 0.00 0.00 36.39 2.24
3944 4103 3.186119 CGTGAGCAACCAAACATGTTTT 58.814 40.909 21.10 5.86 0.00 2.43
3945 4104 2.808244 CGTGAGCAACCAAACATGTTT 58.192 42.857 18.13 18.13 0.00 2.83
3946 4105 2.490328 CGTGAGCAACCAAACATGTT 57.510 45.000 4.92 4.92 0.00 2.71
3966 4125 2.821366 GCATGGGTCAGCGTCCAG 60.821 66.667 0.00 0.00 36.38 3.86
3967 4126 3.315142 GAGCATGGGTCAGCGTCCA 62.315 63.158 0.00 0.00 37.46 4.02
3968 4127 1.676678 TAGAGCATGGGTCAGCGTCC 61.677 60.000 0.00 0.00 35.48 4.79
3969 4128 0.528684 GTAGAGCATGGGTCAGCGTC 60.529 60.000 0.00 0.00 35.48 5.19
3970 4129 0.972983 AGTAGAGCATGGGTCAGCGT 60.973 55.000 0.00 0.00 35.48 5.07
3976 4135 1.406069 CGCTTTCAGTAGAGCATGGGT 60.406 52.381 0.00 0.00 38.81 4.51
3980 4139 0.462759 GGCCGCTTTCAGTAGAGCAT 60.463 55.000 0.00 0.00 38.81 3.79
3983 4142 4.585955 TTATAGGCCGCTTTCAGTAGAG 57.414 45.455 0.00 0.00 0.00 2.43
3985 4144 4.926238 CAGATTATAGGCCGCTTTCAGTAG 59.074 45.833 0.00 0.00 0.00 2.57
3990 4149 1.807142 GCCAGATTATAGGCCGCTTTC 59.193 52.381 0.00 0.00 45.18 2.62
3998 4157 2.907892 TCCCCAGAGCCAGATTATAGG 58.092 52.381 0.00 0.00 0.00 2.57
4002 4161 1.143684 GCATTCCCCAGAGCCAGATTA 59.856 52.381 0.00 0.00 0.00 1.75
4005 4164 1.210204 AAGCATTCCCCAGAGCCAGA 61.210 55.000 0.00 0.00 0.00 3.86
4015 4175 1.356624 CGCGGATTCAAGCATTCCC 59.643 57.895 0.00 0.00 0.00 3.97
4020 4180 0.239879 GAAAACCGCGGATTCAAGCA 59.760 50.000 35.90 0.00 0.00 3.91
4029 4189 0.742990 TGGCTCTATGAAAACCGCGG 60.743 55.000 26.86 26.86 0.00 6.46
4031 4191 2.084546 ACTTGGCTCTATGAAAACCGC 58.915 47.619 0.00 0.00 0.00 5.68
4032 4192 3.751175 TCAACTTGGCTCTATGAAAACCG 59.249 43.478 0.00 0.00 0.00 4.44
4039 4199 3.740764 GCTCTCCTCAACTTGGCTCTATG 60.741 52.174 0.00 0.00 0.00 2.23
4040 4200 2.433970 GCTCTCCTCAACTTGGCTCTAT 59.566 50.000 0.00 0.00 0.00 1.98
4041 4201 1.827969 GCTCTCCTCAACTTGGCTCTA 59.172 52.381 0.00 0.00 0.00 2.43
4042 4202 0.612744 GCTCTCCTCAACTTGGCTCT 59.387 55.000 0.00 0.00 0.00 4.09
4043 4203 0.739112 CGCTCTCCTCAACTTGGCTC 60.739 60.000 0.00 0.00 0.00 4.70
4044 4204 1.294780 CGCTCTCCTCAACTTGGCT 59.705 57.895 0.00 0.00 0.00 4.75
4045 4205 2.394563 GCGCTCTCCTCAACTTGGC 61.395 63.158 0.00 0.00 0.00 4.52
4046 4206 0.603707 TTGCGCTCTCCTCAACTTGG 60.604 55.000 9.73 0.00 0.00 3.61
4047 4207 0.795085 CTTGCGCTCTCCTCAACTTG 59.205 55.000 9.73 0.00 0.00 3.16
4048 4208 0.321122 CCTTGCGCTCTCCTCAACTT 60.321 55.000 9.73 0.00 0.00 2.66
4049 4209 1.294780 CCTTGCGCTCTCCTCAACT 59.705 57.895 9.73 0.00 0.00 3.16
4050 4210 1.743252 CCCTTGCGCTCTCCTCAAC 60.743 63.158 9.73 0.00 0.00 3.18
4051 4211 2.665000 CCCTTGCGCTCTCCTCAA 59.335 61.111 9.73 0.00 0.00 3.02
4052 4212 3.393970 CCCCTTGCGCTCTCCTCA 61.394 66.667 9.73 0.00 0.00 3.86
4053 4213 4.168291 CCCCCTTGCGCTCTCCTC 62.168 72.222 9.73 0.00 0.00 3.71
4067 4227 1.153509 CCATGTACGTCGTTCCCCC 60.154 63.158 1.78 0.00 0.00 5.40
4068 4228 1.153509 CCCATGTACGTCGTTCCCC 60.154 63.158 1.78 0.00 0.00 4.81
4069 4229 1.153509 CCCCATGTACGTCGTTCCC 60.154 63.158 1.78 0.00 0.00 3.97
4070 4230 1.812507 GCCCCATGTACGTCGTTCC 60.813 63.158 1.78 0.00 0.00 3.62
4071 4231 1.082117 CAGCCCCATGTACGTCGTTC 61.082 60.000 1.78 0.00 0.00 3.95
4072 4232 1.079405 CAGCCCCATGTACGTCGTT 60.079 57.895 1.78 0.00 0.00 3.85
4073 4233 2.577059 CAGCCCCATGTACGTCGT 59.423 61.111 2.21 2.21 0.00 4.34
4074 4234 2.202878 CCAGCCCCATGTACGTCG 60.203 66.667 0.00 0.00 0.00 5.12
4075 4235 2.189521 CCCAGCCCCATGTACGTC 59.810 66.667 0.00 0.00 0.00 4.34
4076 4236 3.407967 CCCCAGCCCCATGTACGT 61.408 66.667 0.00 0.00 0.00 3.57
4077 4237 4.189580 CCCCCAGCCCCATGTACG 62.190 72.222 0.00 0.00 0.00 3.67
4078 4238 2.694616 TCCCCCAGCCCCATGTAC 60.695 66.667 0.00 0.00 0.00 2.90
4079 4239 2.368192 CTCCCCCAGCCCCATGTA 60.368 66.667 0.00 0.00 0.00 2.29
4088 4248 4.517934 CCATGCCTGCTCCCCCAG 62.518 72.222 0.00 0.00 0.00 4.45
4090 4250 4.201122 CTCCATGCCTGCTCCCCC 62.201 72.222 0.00 0.00 0.00 5.40
4091 4251 2.459086 ATCTCCATGCCTGCTCCCC 61.459 63.158 0.00 0.00 0.00 4.81
4092 4252 1.228184 CATCTCCATGCCTGCTCCC 60.228 63.158 0.00 0.00 0.00 4.30
4093 4253 1.228184 CCATCTCCATGCCTGCTCC 60.228 63.158 0.00 0.00 0.00 4.70
4094 4254 0.818445 CACCATCTCCATGCCTGCTC 60.818 60.000 0.00 0.00 0.00 4.26
4095 4255 1.226542 CACCATCTCCATGCCTGCT 59.773 57.895 0.00 0.00 0.00 4.24
4096 4256 1.826921 CCACCATCTCCATGCCTGC 60.827 63.158 0.00 0.00 0.00 4.85
4097 4257 1.152819 CCCACCATCTCCATGCCTG 60.153 63.158 0.00 0.00 0.00 4.85
4098 4258 3.065787 GCCCACCATCTCCATGCCT 62.066 63.158 0.00 0.00 0.00 4.75
4099 4259 2.520260 GCCCACCATCTCCATGCC 60.520 66.667 0.00 0.00 0.00 4.40
4100 4260 2.903855 CGCCCACCATCTCCATGC 60.904 66.667 0.00 0.00 0.00 4.06
4101 4261 1.524621 GTCGCCCACCATCTCCATG 60.525 63.158 0.00 0.00 0.00 3.66
4102 4262 2.911143 GTCGCCCACCATCTCCAT 59.089 61.111 0.00 0.00 0.00 3.41
4103 4263 3.770040 CGTCGCCCACCATCTCCA 61.770 66.667 0.00 0.00 0.00 3.86
4104 4264 2.311688 ATTCGTCGCCCACCATCTCC 62.312 60.000 0.00 0.00 0.00 3.71
4105 4265 0.387929 TATTCGTCGCCCACCATCTC 59.612 55.000 0.00 0.00 0.00 2.75
4106 4266 1.000955 GATATTCGTCGCCCACCATCT 59.999 52.381 0.00 0.00 0.00 2.90
4107 4267 1.000955 AGATATTCGTCGCCCACCATC 59.999 52.381 0.00 0.00 0.00 3.51
4108 4268 1.048601 AGATATTCGTCGCCCACCAT 58.951 50.000 0.00 0.00 0.00 3.55
4109 4269 0.104120 CAGATATTCGTCGCCCACCA 59.896 55.000 0.00 0.00 0.00 4.17
4110 4270 1.222115 GCAGATATTCGTCGCCCACC 61.222 60.000 0.00 0.00 0.00 4.61
4111 4271 0.249489 AGCAGATATTCGTCGCCCAC 60.249 55.000 0.00 0.00 0.00 4.61
4112 4272 0.249447 CAGCAGATATTCGTCGCCCA 60.249 55.000 0.00 0.00 0.00 5.36
4113 4273 0.946221 CCAGCAGATATTCGTCGCCC 60.946 60.000 0.00 0.00 0.00 6.13
4114 4274 0.946221 CCCAGCAGATATTCGTCGCC 60.946 60.000 0.00 0.00 0.00 5.54
4115 4275 0.946221 CCCCAGCAGATATTCGTCGC 60.946 60.000 0.00 0.00 0.00 5.19
4116 4276 0.946221 GCCCCAGCAGATATTCGTCG 60.946 60.000 0.00 0.00 39.53 5.12
4117 4277 0.946221 CGCCCCAGCAGATATTCGTC 60.946 60.000 0.00 0.00 39.83 4.20
4118 4278 1.069765 CGCCCCAGCAGATATTCGT 59.930 57.895 0.00 0.00 39.83 3.85
4119 4279 1.669115 CCGCCCCAGCAGATATTCG 60.669 63.158 0.00 0.00 39.83 3.34
4120 4280 0.685097 TACCGCCCCAGCAGATATTC 59.315 55.000 0.00 0.00 39.83 1.75
4121 4281 1.362224 ATACCGCCCCAGCAGATATT 58.638 50.000 0.00 0.00 39.83 1.28
4122 4282 2.111384 CTATACCGCCCCAGCAGATAT 58.889 52.381 0.00 0.00 39.83 1.63
4123 4283 1.557099 CTATACCGCCCCAGCAGATA 58.443 55.000 0.00 0.00 39.83 1.98
4124 4284 1.831652 GCTATACCGCCCCAGCAGAT 61.832 60.000 0.00 0.00 39.83 2.90
4125 4285 2.507854 GCTATACCGCCCCAGCAGA 61.508 63.158 0.00 0.00 39.83 4.26
4126 4286 2.031163 GCTATACCGCCCCAGCAG 59.969 66.667 0.00 0.00 39.83 4.24
4127 4287 3.923864 CGCTATACCGCCCCAGCA 61.924 66.667 0.00 0.00 39.83 4.41
4135 4295 3.673809 GGAGTAGATTTTGCGCTATACCG 59.326 47.826 9.73 0.00 0.00 4.02
4136 4296 3.995048 GGGAGTAGATTTTGCGCTATACC 59.005 47.826 9.73 0.00 0.00 2.73
4137 4297 4.448060 GTGGGAGTAGATTTTGCGCTATAC 59.552 45.833 9.73 0.00 0.00 1.47
4138 4298 4.502604 GGTGGGAGTAGATTTTGCGCTATA 60.503 45.833 9.73 0.00 0.00 1.31
4139 4299 3.467803 GTGGGAGTAGATTTTGCGCTAT 58.532 45.455 9.73 0.00 0.00 2.97
4140 4300 2.419574 GGTGGGAGTAGATTTTGCGCTA 60.420 50.000 9.73 0.00 0.00 4.26
4141 4301 1.679032 GGTGGGAGTAGATTTTGCGCT 60.679 52.381 9.73 0.00 0.00 5.92
4142 4302 0.733150 GGTGGGAGTAGATTTTGCGC 59.267 55.000 0.00 0.00 0.00 6.09
4143 4303 1.006832 CGGTGGGAGTAGATTTTGCG 58.993 55.000 0.00 0.00 0.00 4.85
4144 4304 0.733150 GCGGTGGGAGTAGATTTTGC 59.267 55.000 0.00 0.00 0.00 3.68
4145 4305 1.379527 GGCGGTGGGAGTAGATTTTG 58.620 55.000 0.00 0.00 0.00 2.44
4146 4306 0.255033 GGGCGGTGGGAGTAGATTTT 59.745 55.000 0.00 0.00 0.00 1.82
4147 4307 0.620700 AGGGCGGTGGGAGTAGATTT 60.621 55.000 0.00 0.00 0.00 2.17
4148 4308 0.620700 AAGGGCGGTGGGAGTAGATT 60.621 55.000 0.00 0.00 0.00 2.40
4149 4309 0.620700 AAAGGGCGGTGGGAGTAGAT 60.621 55.000 0.00 0.00 0.00 1.98
4150 4310 0.838987 AAAAGGGCGGTGGGAGTAGA 60.839 55.000 0.00 0.00 0.00 2.59
4151 4311 0.906775 TAAAAGGGCGGTGGGAGTAG 59.093 55.000 0.00 0.00 0.00 2.57
4152 4312 0.906775 CTAAAAGGGCGGTGGGAGTA 59.093 55.000 0.00 0.00 0.00 2.59
4153 4313 1.683441 CTAAAAGGGCGGTGGGAGT 59.317 57.895 0.00 0.00 0.00 3.85
4154 4314 1.749258 GCTAAAAGGGCGGTGGGAG 60.749 63.158 0.00 0.00 0.00 4.30
4155 4315 2.228480 AGCTAAAAGGGCGGTGGGA 61.228 57.895 0.00 0.00 34.52 4.37
4156 4316 2.046285 CAGCTAAAAGGGCGGTGGG 61.046 63.158 0.00 0.00 34.52 4.61
4157 4317 2.700773 GCAGCTAAAAGGGCGGTGG 61.701 63.158 0.00 0.00 34.52 4.61
4158 4318 1.648467 GAGCAGCTAAAAGGGCGGTG 61.648 60.000 0.00 0.00 34.52 4.94
4159 4319 1.377333 GAGCAGCTAAAAGGGCGGT 60.377 57.895 0.00 0.00 34.52 5.68
4160 4320 1.377202 TGAGCAGCTAAAAGGGCGG 60.377 57.895 0.00 0.00 34.52 6.13
4161 4321 1.648467 GGTGAGCAGCTAAAAGGGCG 61.648 60.000 0.00 0.00 34.52 6.13
4162 4322 0.322906 AGGTGAGCAGCTAAAAGGGC 60.323 55.000 0.00 0.00 37.39 5.19
4163 4323 1.280421 AGAGGTGAGCAGCTAAAAGGG 59.720 52.381 0.00 0.00 39.57 3.95
4164 4324 2.777832 AGAGGTGAGCAGCTAAAAGG 57.222 50.000 0.00 0.00 39.57 3.11
4165 4325 3.194062 GCTAGAGGTGAGCAGCTAAAAG 58.806 50.000 0.00 2.35 39.57 2.27
4166 4326 2.567169 TGCTAGAGGTGAGCAGCTAAAA 59.433 45.455 0.00 0.00 44.89 1.52
4167 4327 2.179427 TGCTAGAGGTGAGCAGCTAAA 58.821 47.619 0.00 0.00 44.89 1.85
4168 4328 1.852633 TGCTAGAGGTGAGCAGCTAA 58.147 50.000 0.00 0.00 44.89 3.09
4169 4329 3.596362 TGCTAGAGGTGAGCAGCTA 57.404 52.632 0.00 0.00 44.89 3.32
4170 4330 4.449638 TGCTAGAGGTGAGCAGCT 57.550 55.556 0.00 0.00 44.89 4.24
4174 4334 2.289694 TGTCCTTTTGCTAGAGGTGAGC 60.290 50.000 4.70 0.00 40.53 4.26
4175 4335 3.685139 TGTCCTTTTGCTAGAGGTGAG 57.315 47.619 4.70 0.00 34.57 3.51
4176 4336 4.431416 TTTGTCCTTTTGCTAGAGGTGA 57.569 40.909 4.70 0.00 34.57 4.02
4177 4337 4.156739 GGATTTGTCCTTTTGCTAGAGGTG 59.843 45.833 4.70 0.00 34.57 4.00
4178 4338 4.202567 TGGATTTGTCCTTTTGCTAGAGGT 60.203 41.667 4.70 0.00 34.57 3.85
4179 4339 4.335416 TGGATTTGTCCTTTTGCTAGAGG 58.665 43.478 0.00 0.00 0.00 3.69
4180 4340 5.964958 TTGGATTTGTCCTTTTGCTAGAG 57.035 39.130 0.00 0.00 0.00 2.43
4181 4341 6.248433 AGATTGGATTTGTCCTTTTGCTAGA 58.752 36.000 0.00 0.00 0.00 2.43
4182 4342 6.151648 TGAGATTGGATTTGTCCTTTTGCTAG 59.848 38.462 0.00 0.00 0.00 3.42
4183 4343 6.009589 TGAGATTGGATTTGTCCTTTTGCTA 58.990 36.000 0.00 0.00 0.00 3.49
4184 4344 4.834496 TGAGATTGGATTTGTCCTTTTGCT 59.166 37.500 0.00 0.00 0.00 3.91
4185 4345 5.138125 TGAGATTGGATTTGTCCTTTTGC 57.862 39.130 0.00 0.00 0.00 3.68
4186 4346 6.336842 ACTGAGATTGGATTTGTCCTTTTG 57.663 37.500 0.00 0.00 0.00 2.44
4187 4347 6.983906 AACTGAGATTGGATTTGTCCTTTT 57.016 33.333 0.00 0.00 0.00 2.27
4188 4348 6.983906 AAACTGAGATTGGATTTGTCCTTT 57.016 33.333 0.00 0.00 0.00 3.11
4189 4349 6.294176 CGAAAACTGAGATTGGATTTGTCCTT 60.294 38.462 0.00 0.00 0.00 3.36
4190 4350 5.182001 CGAAAACTGAGATTGGATTTGTCCT 59.818 40.000 0.00 0.00 0.00 3.85
4191 4351 5.393962 CGAAAACTGAGATTGGATTTGTCC 58.606 41.667 0.00 0.00 0.00 4.02
4192 4352 4.853743 GCGAAAACTGAGATTGGATTTGTC 59.146 41.667 0.00 0.00 0.00 3.18
4193 4353 4.278170 TGCGAAAACTGAGATTGGATTTGT 59.722 37.500 0.00 0.00 0.00 2.83
4194 4354 4.618489 GTGCGAAAACTGAGATTGGATTTG 59.382 41.667 0.00 0.00 0.00 2.32
4195 4355 4.321230 GGTGCGAAAACTGAGATTGGATTT 60.321 41.667 0.00 0.00 0.00 2.17
4196 4356 3.191371 GGTGCGAAAACTGAGATTGGATT 59.809 43.478 0.00 0.00 0.00 3.01
4197 4357 2.749621 GGTGCGAAAACTGAGATTGGAT 59.250 45.455 0.00 0.00 0.00 3.41
4198 4358 2.151202 GGTGCGAAAACTGAGATTGGA 58.849 47.619 0.00 0.00 0.00 3.53
4199 4359 1.135972 CGGTGCGAAAACTGAGATTGG 60.136 52.381 0.00 0.00 0.00 3.16
4200 4360 1.135972 CCGGTGCGAAAACTGAGATTG 60.136 52.381 0.00 0.00 0.00 2.67
4201 4361 1.156736 CCGGTGCGAAAACTGAGATT 58.843 50.000 0.00 0.00 0.00 2.40
4202 4362 0.320374 TCCGGTGCGAAAACTGAGAT 59.680 50.000 0.00 0.00 0.00 2.75
4203 4363 0.105224 TTCCGGTGCGAAAACTGAGA 59.895 50.000 0.00 0.00 0.00 3.27
4204 4364 0.512952 CTTCCGGTGCGAAAACTGAG 59.487 55.000 0.00 0.00 0.00 3.35
4205 4365 1.503818 GCTTCCGGTGCGAAAACTGA 61.504 55.000 0.00 0.00 0.00 3.41
4206 4366 1.082104 GCTTCCGGTGCGAAAACTG 60.082 57.895 0.00 0.00 0.00 3.16
4207 4367 3.340789 GCTTCCGGTGCGAAAACT 58.659 55.556 0.00 0.00 0.00 2.66
4215 4375 4.735132 TCGCCTTCGCTTCCGGTG 62.735 66.667 0.00 0.00 35.26 4.94
4216 4376 4.736896 GTCGCCTTCGCTTCCGGT 62.737 66.667 0.00 0.00 35.26 5.28
4217 4377 2.552585 TAAGTCGCCTTCGCTTCCGG 62.553 60.000 0.00 0.00 35.15 5.14
4218 4378 1.140407 CTAAGTCGCCTTCGCTTCCG 61.140 60.000 0.00 0.00 35.15 4.30
4219 4379 0.172803 TCTAAGTCGCCTTCGCTTCC 59.827 55.000 0.00 0.00 35.15 3.46
4220 4380 2.121009 GATCTAAGTCGCCTTCGCTTC 58.879 52.381 0.00 0.00 35.15 3.86
4221 4381 1.751924 AGATCTAAGTCGCCTTCGCTT 59.248 47.619 0.00 0.00 36.54 4.68
4222 4382 1.335496 GAGATCTAAGTCGCCTTCGCT 59.665 52.381 0.00 0.00 35.26 4.93
4223 4383 1.600912 GGAGATCTAAGTCGCCTTCGC 60.601 57.143 0.00 0.00 35.47 4.70
4224 4384 1.334239 CGGAGATCTAAGTCGCCTTCG 60.334 57.143 0.00 0.00 36.10 3.79
4225 4385 1.677052 ACGGAGATCTAAGTCGCCTTC 59.323 52.381 0.00 0.00 36.10 3.46
4226 4386 1.765230 ACGGAGATCTAAGTCGCCTT 58.235 50.000 0.00 0.00 36.10 4.35
4227 4387 1.765230 AACGGAGATCTAAGTCGCCT 58.235 50.000 0.00 0.00 36.10 5.52
4228 4388 2.287487 GGTAACGGAGATCTAAGTCGCC 60.287 54.545 0.00 1.68 35.06 5.54
4229 4389 2.997463 GGTAACGGAGATCTAAGTCGC 58.003 52.381 0.00 0.00 0.00 5.19
4244 4404 2.582978 GGAGCACCTCCCGGTAAC 59.417 66.667 0.00 0.00 44.36 2.50
4252 4412 1.303643 CAAAGTGGGGGAGCACCTC 60.304 63.158 0.00 0.00 41.63 3.85
4253 4413 2.069165 GACAAAGTGGGGGAGCACCT 62.069 60.000 0.00 0.00 40.03 4.00
4254 4414 1.603739 GACAAAGTGGGGGAGCACC 60.604 63.158 0.00 0.00 39.11 5.01
4255 4415 0.890996 CTGACAAAGTGGGGGAGCAC 60.891 60.000 0.00 0.00 0.00 4.40
4256 4416 1.455849 CTGACAAAGTGGGGGAGCA 59.544 57.895 0.00 0.00 0.00 4.26
4257 4417 1.973812 GCTGACAAAGTGGGGGAGC 60.974 63.158 0.00 0.00 0.00 4.70
4258 4418 0.607489 CAGCTGACAAAGTGGGGGAG 60.607 60.000 8.42 0.00 0.00 4.30
4259 4419 1.455849 CAGCTGACAAAGTGGGGGA 59.544 57.895 8.42 0.00 0.00 4.81
4260 4420 2.270986 GCAGCTGACAAAGTGGGGG 61.271 63.158 20.43 0.00 0.00 5.40
4261 4421 2.270986 GGCAGCTGACAAAGTGGGG 61.271 63.158 20.43 0.00 0.00 4.96
4262 4422 2.270986 GGGCAGCTGACAAAGTGGG 61.271 63.158 23.90 0.00 0.00 4.61
4263 4423 2.620112 CGGGCAGCTGACAAAGTGG 61.620 63.158 23.90 0.00 0.00 4.00
4264 4424 1.845809 GACGGGCAGCTGACAAAGTG 61.846 60.000 23.90 7.67 0.00 3.16
4265 4425 1.598130 GACGGGCAGCTGACAAAGT 60.598 57.895 23.90 17.97 0.00 2.66
4266 4426 2.328099 GGACGGGCAGCTGACAAAG 61.328 63.158 23.90 14.58 0.00 2.77
4267 4427 2.281484 GGACGGGCAGCTGACAAA 60.281 61.111 23.90 0.00 0.00 2.83
4268 4428 4.329545 GGGACGGGCAGCTGACAA 62.330 66.667 23.90 0.00 0.00 3.18
4272 4432 4.785453 GAAGGGGACGGGCAGCTG 62.785 72.222 10.11 10.11 0.00 4.24
4275 4435 4.452733 GACGAAGGGGACGGGCAG 62.453 72.222 0.00 0.00 34.93 4.85
4277 4437 4.144703 GAGACGAAGGGGACGGGC 62.145 72.222 0.00 0.00 34.93 6.13
4278 4438 3.459063 GGAGACGAAGGGGACGGG 61.459 72.222 0.00 0.00 34.93 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.