Multiple sequence alignment - TraesCS5A01G404600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G404600 chr5A 100.000 4275 0 0 1 4275 596461904 596466178 0.000000e+00 7895
1 TraesCS5A01G404600 chr5A 99.624 266 1 0 4010 4275 596474307 596474572 1.790000e-133 486
2 TraesCS5A01G404600 chr5A 97.826 276 6 0 4000 4275 396032657 396032382 1.080000e-130 477
3 TraesCS5A01G404600 chr5A 91.698 265 21 1 3719 3983 394832978 394833241 2.430000e-97 366
4 TraesCS5A01G404600 chr5A 94.068 236 14 0 357 592 22993859 22993624 4.060000e-95 359
5 TraesCS5A01G404600 chr5A 92.672 232 17 0 361 592 457834985 457835216 6.850000e-88 335
6 TraesCS5A01G404600 chr5D 92.806 3753 185 44 1 3733 477028496 477032183 0.000000e+00 5356
7 TraesCS5A01G404600 chr5B 90.653 3156 199 35 573 3701 584853048 584856134 0.000000e+00 4106
8 TraesCS5A01G404600 chr5B 82.780 482 47 15 1 460 584852337 584852804 8.610000e-107 398
9 TraesCS5A01G404600 chr5B 91.111 270 16 2 581 842 584852658 584852927 4.060000e-95 359
10 TraesCS5A01G404600 chrUn 99.254 268 2 0 4008 4275 342040760 342041027 6.430000e-133 484
11 TraesCS5A01G404600 chr4A 99.254 268 2 0 4008 4275 352564927 352564660 6.430000e-133 484
12 TraesCS5A01G404600 chr3A 99.254 268 2 0 4008 4275 749889816 749889549 6.430000e-133 484
13 TraesCS5A01G404600 chr3A 99.254 268 2 0 4008 4275 749898653 749898386 6.430000e-133 484
14 TraesCS5A01G404600 chr3A 92.278 259 19 1 3725 3983 316668345 316668088 2.430000e-97 366
15 TraesCS5A01G404600 chr3A 90.741 270 23 1 3714 3983 25109850 25110117 4.060000e-95 359
16 TraesCS5A01G404600 chr3A 91.011 267 23 1 3717 3983 706256628 706256893 4.060000e-95 359
17 TraesCS5A01G404600 chr3A 93.220 236 16 0 357 592 715693488 715693253 8.800000e-92 348
18 TraesCS5A01G404600 chr7A 98.529 272 4 0 4004 4275 580720053 580719782 8.310000e-132 481
19 TraesCS5A01G404600 chr7A 92.373 236 18 0 357 592 473949821 473949586 1.900000e-88 337
20 TraesCS5A01G404600 chr7A 94.521 146 8 0 447 592 665439974 665440119 4.300000e-55 226
21 TraesCS5A01G404600 chr4B 97.834 277 5 1 3999 4275 632017146 632017421 1.080000e-130 477
22 TraesCS5A01G404600 chr3B 97.491 279 6 1 3997 4275 720612287 720612564 3.870000e-130 475
23 TraesCS5A01G404600 chr3B 92.469 239 17 1 354 592 28079251 28079488 1.470000e-89 340
24 TraesCS5A01G404600 chr6A 92.664 259 18 1 3725 3983 522884214 522884471 5.220000e-99 372
25 TraesCS5A01G404600 chr6A 90.706 269 23 2 3715 3983 134354907 134355173 1.460000e-94 357
26 TraesCS5A01G404600 chr2A 92.636 258 18 1 3726 3983 692211755 692211499 1.880000e-98 370
27 TraesCS5A01G404600 chr2A 92.015 263 20 1 3722 3983 297254926 297255188 6.750000e-98 368
28 TraesCS5A01G404600 chr2A 91.892 259 20 1 3725 3983 133765390 133765133 1.130000e-95 361
29 TraesCS5A01G404600 chr7B 93.305 239 16 0 354 592 41198836 41199074 1.890000e-93 353
30 TraesCS5A01G404600 chr1A 98.936 94 1 0 499 592 466349645 466349738 7.350000e-38 169


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G404600 chr5A 596461904 596466178 4274 False 7895 7895 100.000000 1 4275 1 chr5A.!!$F3 4274
1 TraesCS5A01G404600 chr5D 477028496 477032183 3687 False 5356 5356 92.806000 1 3733 1 chr5D.!!$F1 3732
2 TraesCS5A01G404600 chr5B 584852337 584856134 3797 False 1621 4106 88.181333 1 3701 3 chr5B.!!$F1 3700

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 416 0.168128 GGTAGTCCATGCGTGTTTGC 59.832 55.0 4.96 0.0 0.00 3.68 F
969 1385 0.324943 GGTTCAGTAGCTGCCTCCAA 59.675 55.0 0.00 0.0 0.00 3.53 F
1413 1831 0.625316 TGCTGTATGGCAAGGATGGT 59.375 50.0 0.00 0.0 39.43 3.55 F
3166 3603 0.322906 GGAGCTTCCTCAAGGTTGGG 60.323 60.0 0.00 0.0 40.57 4.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2338 2775 0.958091 CACATGCTCGGAAACCCAAA 59.042 50.000 0.00 0.0 0.0 3.28 R
2881 3318 1.001633 GACTTGGTCGGTAGCTTGGAA 59.998 52.381 0.00 0.0 0.0 3.53 R
3271 3708 0.250234 CAAGCCACCGGAGATCTCAA 59.750 55.000 23.85 0.0 0.0 3.02 R
4062 4507 0.041238 TCCCGTGAGTCCCTGATCTT 59.959 55.000 0.00 0.0 0.0 2.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.213182 TCGGTGCCTCTGATAGTCTCT 59.787 52.381 0.00 0.00 0.00 3.10
39 40 1.336440 CGGTGCCTCTGATAGTCTCTG 59.664 57.143 0.00 0.00 0.00 3.35
52 53 2.455557 AGTCTCTGATGTCCTGAGGTG 58.544 52.381 0.00 0.00 40.16 4.00
59 60 0.987294 ATGTCCTGAGGTGTTGAGGG 59.013 55.000 0.00 0.00 0.00 4.30
60 61 1.003233 GTCCTGAGGTGTTGAGGGC 60.003 63.158 0.00 0.00 0.00 5.19
61 62 1.152030 TCCTGAGGTGTTGAGGGCT 60.152 57.895 0.00 0.00 0.00 5.19
63 64 0.607489 CCTGAGGTGTTGAGGGCTTG 60.607 60.000 0.00 0.00 0.00 4.01
64 65 0.397941 CTGAGGTGTTGAGGGCTTGA 59.602 55.000 0.00 0.00 0.00 3.02
65 66 0.397941 TGAGGTGTTGAGGGCTTGAG 59.602 55.000 0.00 0.00 0.00 3.02
68 69 2.032528 TGTTGAGGGCTTGAGGCG 59.967 61.111 0.00 0.00 42.94 5.52
69 70 2.747855 GTTGAGGGCTTGAGGCGG 60.748 66.667 0.00 0.00 42.94 6.13
70 71 4.722700 TTGAGGGCTTGAGGCGGC 62.723 66.667 0.00 0.00 42.94 6.53
72 73 4.847444 GAGGGCTTGAGGCGGCTC 62.847 72.222 30.53 30.53 42.94 4.70
76 77 4.774503 GCTTGAGGCGGCTCTGCT 62.775 66.667 35.12 3.58 34.52 4.24
77 78 2.511145 CTTGAGGCGGCTCTGCTC 60.511 66.667 35.12 13.99 34.52 4.26
78 79 3.306595 CTTGAGGCGGCTCTGCTCA 62.307 63.158 35.12 16.51 34.52 4.26
79 80 2.793160 CTTGAGGCGGCTCTGCTCAA 62.793 60.000 35.12 22.12 33.82 3.02
84 85 1.499502 GCGGCTCTGCTCAAGTTTC 59.500 57.895 0.00 0.00 0.00 2.78
96 97 0.234884 CAAGTTTCGCTCGGTGGTTC 59.765 55.000 0.00 0.00 0.00 3.62
108 109 2.935481 TGGTTCCTGGGGAGCTGG 60.935 66.667 0.00 0.00 33.37 4.85
203 208 2.169352 GCAGGAGAGGTATGTGTCACAT 59.831 50.000 21.70 21.70 42.35 3.21
207 212 4.404073 AGGAGAGGTATGTGTCACATTCTC 59.596 45.833 25.30 25.30 39.88 2.87
217 222 0.171231 TCACATTCTCACGCTCCTCG 59.829 55.000 0.00 0.00 45.38 4.63
239 251 2.888834 ATTTTCCTTTTGCTGCGTGT 57.111 40.000 0.00 0.00 0.00 4.49
324 336 7.092079 GGTATTTTTATACGGTGGCTTTGTTT 58.908 34.615 0.00 0.00 0.00 2.83
381 393 7.308229 CCTGACTCTAGAAATGTTTGGAGTTTG 60.308 40.741 0.00 0.00 34.73 2.93
400 412 0.246635 GTCTGGTAGTCCATGCGTGT 59.753 55.000 4.96 0.00 43.43 4.49
403 415 1.464608 CTGGTAGTCCATGCGTGTTTG 59.535 52.381 4.96 0.00 43.43 2.93
404 416 0.168128 GGTAGTCCATGCGTGTTTGC 59.832 55.000 4.96 0.00 0.00 3.68
478 490 1.628846 AGCCCGGTCTGAATTTGTACT 59.371 47.619 0.00 0.00 0.00 2.73
479 491 2.835764 AGCCCGGTCTGAATTTGTACTA 59.164 45.455 0.00 0.00 0.00 1.82
480 492 3.118738 AGCCCGGTCTGAATTTGTACTAG 60.119 47.826 0.00 0.00 0.00 2.57
483 495 4.504858 CCGGTCTGAATTTGTACTAGCTT 58.495 43.478 0.00 0.00 0.00 3.74
484 496 4.935808 CCGGTCTGAATTTGTACTAGCTTT 59.064 41.667 0.00 0.00 0.00 3.51
485 497 5.063564 CCGGTCTGAATTTGTACTAGCTTTC 59.936 44.000 0.00 0.00 0.00 2.62
486 498 5.637810 CGGTCTGAATTTGTACTAGCTTTCA 59.362 40.000 0.00 0.00 0.00 2.69
487 499 6.183360 CGGTCTGAATTTGTACTAGCTTTCAG 60.183 42.308 12.33 12.33 40.72 3.02
492 504 8.846943 TGAATTTGTACTAGCTTTCAGATGAA 57.153 30.769 0.00 0.00 0.00 2.57
547 560 1.423395 GAGCTGTACTCACACTGCAC 58.577 55.000 0.00 0.00 45.49 4.57
551 564 3.006859 AGCTGTACTCACACTGCACATAA 59.993 43.478 7.67 0.00 43.54 1.90
567 580 6.611381 TGCACATAAAGAAGATGCTGTAAAC 58.389 36.000 0.00 0.00 37.20 2.01
579 592 3.879998 TGCTGTAAACTGTCTTGGTGAA 58.120 40.909 0.00 0.00 0.00 3.18
589 602 4.709397 ACTGTCTTGGTGAATTTGTTCCAA 59.291 37.500 0.00 0.00 38.13 3.53
654 667 6.821031 TGTTTAGACTCTAGAGTTGGTCTC 57.179 41.667 25.86 12.29 42.66 3.36
735 756 2.948315 GAGAGATGGATCCCAAGTTTGC 59.052 50.000 9.90 0.00 36.95 3.68
770 791 7.542477 CGTAATGAAGAAGAGTGTGAACTATGT 59.458 37.037 0.00 0.00 0.00 2.29
781 802 6.014647 AGTGTGAACTATGTACTTGGAGGTA 58.985 40.000 0.00 0.00 0.00 3.08
869 1285 8.366671 TCTCTTTCTTACTTACAGAGCAAAAC 57.633 34.615 0.00 0.00 32.50 2.43
934 1350 4.381612 CCTGCGTGTTACTTATTCTCAGGA 60.382 45.833 0.00 0.00 40.58 3.86
938 1354 6.755141 TGCGTGTTACTTATTCTCAGGAATAC 59.245 38.462 0.00 0.00 42.15 1.89
951 1367 3.130516 TCAGGAATACGAACTAGTGCTGG 59.869 47.826 0.00 0.00 38.88 4.85
962 1378 2.232452 ACTAGTGCTGGTTCAGTAGCTG 59.768 50.000 0.00 0.00 41.45 4.24
969 1385 0.324943 GGTTCAGTAGCTGCCTCCAA 59.675 55.000 0.00 0.00 0.00 3.53
995 1413 4.081642 GTCACTGGTCATAAGCTTCCTACA 60.082 45.833 0.00 0.00 0.00 2.74
996 1414 4.716784 TCACTGGTCATAAGCTTCCTACAT 59.283 41.667 0.00 0.00 0.00 2.29
998 1416 6.382859 TCACTGGTCATAAGCTTCCTACATAA 59.617 38.462 0.00 0.00 0.00 1.90
999 1417 7.071196 TCACTGGTCATAAGCTTCCTACATAAT 59.929 37.037 0.00 0.00 0.00 1.28
1008 1426 5.799213 AGCTTCCTACATAATATGGCAGAC 58.201 41.667 5.16 0.00 33.60 3.51
1059 1477 1.210967 ACAAAGTTCAGAACCGTCCCA 59.789 47.619 9.85 0.00 0.00 4.37
1068 1486 0.958822 GAACCGTCCCAATTGCTGTT 59.041 50.000 0.00 0.00 0.00 3.16
1098 1516 1.303561 GTTCTGGTGCTGCCCATCA 60.304 57.895 9.75 0.00 36.04 3.07
1149 1567 1.115326 AAAACCAGCAGACAAGGCCC 61.115 55.000 0.00 0.00 0.00 5.80
1233 1651 1.472878 TCGGAGAGGAGAACACATTCG 59.527 52.381 0.00 0.00 40.04 3.34
1263 1681 4.187694 CAAGGTCCAGAGCTAATTCAGAC 58.812 47.826 0.00 0.00 38.35 3.51
1311 1729 3.124921 GCCACGTCCAATCCACCG 61.125 66.667 0.00 0.00 0.00 4.94
1359 1777 5.301835 AGCAGCATAAGATATCTGTTGGT 57.698 39.130 5.86 9.70 0.00 3.67
1413 1831 0.625316 TGCTGTATGGCAAGGATGGT 59.375 50.000 0.00 0.00 39.43 3.55
1422 1840 1.533625 GCAAGGATGGTGTTGCTGTA 58.466 50.000 0.00 0.00 44.68 2.74
1473 1891 4.488879 CTGAAAATAGCACCTTCTTTGCC 58.511 43.478 0.00 0.00 41.18 4.52
1482 1900 2.096496 CACCTTCTTTGCCGATAAGCTG 59.904 50.000 0.00 0.00 0.00 4.24
1725 2145 5.874895 AGATGTAGAAACGGTAAAAAGCC 57.125 39.130 0.00 0.00 0.00 4.35
1734 2154 1.822506 GGTAAAAAGCCGAGCCTTCT 58.177 50.000 0.00 0.00 0.00 2.85
1735 2155 1.468914 GGTAAAAAGCCGAGCCTTCTG 59.531 52.381 0.00 0.00 0.00 3.02
1788 2208 3.384467 ACATGTGCTGGTGCTTTAAGTTT 59.616 39.130 0.00 0.00 40.48 2.66
1790 2210 4.040445 TGTGCTGGTGCTTTAAGTTTTC 57.960 40.909 0.00 0.00 40.48 2.29
1794 2214 5.232202 GTGCTGGTGCTTTAAGTTTTCTTTC 59.768 40.000 0.00 0.00 39.42 2.62
1821 2243 8.364142 TGGTGCTTTAAGTTAGTGCAATATTTT 58.636 29.630 11.68 0.00 35.34 1.82
1822 2244 9.203421 GGTGCTTTAAGTTAGTGCAATATTTTT 57.797 29.630 11.68 0.00 35.34 1.94
1836 2258 7.877612 GTGCAATATTTTTCCTTAATATGGGGG 59.122 37.037 0.00 0.00 30.63 5.40
1864 2290 3.915437 TTCCTTCACCGAAATGCTTTC 57.085 42.857 0.00 0.00 36.32 2.62
1892 2318 2.906389 AGAAGCTTGTCATGTGTAGGGA 59.094 45.455 2.10 0.00 0.00 4.20
2102 2530 1.194772 GTAAGTCAGCAAAGACGGCAC 59.805 52.381 0.00 0.00 43.24 5.01
2244 2679 8.737168 CTCAATTAGGATGAATGACCAACTTA 57.263 34.615 0.00 0.00 0.00 2.24
2271 2706 5.976458 TCTTCAGAACAAATGCACCTTTTT 58.024 33.333 0.00 0.00 0.00 1.94
2314 2751 8.193250 TGTTCGCTATGTAATTTAGTTCCTTC 57.807 34.615 0.00 0.00 0.00 3.46
2336 2773 5.962433 TCTATACTGTACAGGTTGCAGAAC 58.038 41.667 26.12 0.00 34.60 3.01
2337 2774 4.617253 ATACTGTACAGGTTGCAGAACA 57.383 40.909 26.12 0.00 33.27 3.18
2338 2775 3.492102 ACTGTACAGGTTGCAGAACAT 57.508 42.857 26.12 0.00 33.27 2.71
2539 2976 6.252869 CGTTTGTGCGTATCATAGAACTAGTT 59.747 38.462 8.13 8.13 0.00 2.24
2641 3078 1.769026 CCAGTAGCTCTGCTGACCTA 58.231 55.000 15.09 0.00 44.51 3.08
2653 3090 2.028112 TGCTGACCTATGTGTTGAGACC 60.028 50.000 0.00 0.00 0.00 3.85
2662 3099 1.618837 TGTGTTGAGACCCTCTACAGC 59.381 52.381 10.55 7.44 43.98 4.40
2665 3102 3.702045 GTGTTGAGACCCTCTACAGCTAT 59.298 47.826 10.55 0.00 43.98 2.97
2704 3141 1.768275 TCTCTGCTGACCCTGTTTCAA 59.232 47.619 0.00 0.00 0.00 2.69
2721 3158 2.497138 TCAACAAGCATCTGACAGTGG 58.503 47.619 1.59 0.00 0.00 4.00
2739 3176 3.135530 AGTGGTTTCTCTGAGCAGTCTTT 59.864 43.478 0.00 0.00 0.00 2.52
2773 3210 1.134788 CCGGTTCTTCGGCAGATTACT 60.135 52.381 0.00 0.00 43.71 2.24
2791 3228 3.634568 ACTCTCGAAGCGGATAATCTG 57.365 47.619 0.00 0.00 0.00 2.90
2792 3229 2.952978 ACTCTCGAAGCGGATAATCTGT 59.047 45.455 0.00 0.00 0.00 3.41
2794 3231 4.579340 ACTCTCGAAGCGGATAATCTGTTA 59.421 41.667 0.00 0.00 0.00 2.41
2881 3318 2.274760 GAGCTGGCTGGGCTTCAT 59.725 61.111 0.00 0.00 40.40 2.57
3094 3531 2.794028 GGAAGGGATCGGGTCGACC 61.794 68.421 27.04 27.04 39.18 4.79
3166 3603 0.322906 GGAGCTTCCTCAAGGTTGGG 60.323 60.000 0.00 0.00 40.57 4.12
3342 3784 5.613358 AAGTAGAACATCGCTGAAAAAGG 57.387 39.130 0.00 0.00 0.00 3.11
3378 3820 3.567164 AGTTGATTTGTGTGAGGCTTGAG 59.433 43.478 0.00 0.00 0.00 3.02
3405 3847 2.353839 GTGCGCTGTGCTTTGTGG 60.354 61.111 14.92 0.00 46.63 4.17
3417 3859 0.593128 CTTTGTGGTGCTTCTTCGGG 59.407 55.000 0.00 0.00 0.00 5.14
3433 3875 0.591741 CGGGTCTTCGCTGATACGTC 60.592 60.000 0.00 0.00 0.00 4.34
3484 3926 3.937706 GTCTTGTCTGATGTGCTGCTTAT 59.062 43.478 0.00 0.00 0.00 1.73
3514 3956 3.645884 AGACATCAGTTTGTTGCATTGC 58.354 40.909 0.46 0.46 0.00 3.56
3525 3967 2.860735 TGTTGCATTGCGTTTTGTTACC 59.139 40.909 3.84 0.00 0.00 2.85
3528 3970 2.159240 TGCATTGCGTTTTGTTACCACA 60.159 40.909 3.84 0.00 0.00 4.17
3571 4013 2.287915 CACTGTATTATTGCGGCTCACC 59.712 50.000 0.00 0.00 0.00 4.02
3583 4025 1.443802 GGCTCACCTGTAGAAACTGC 58.556 55.000 0.00 0.00 0.00 4.40
3675 4120 7.126061 TCTGAGATTTGGGAGAGTTGAGTATA 58.874 38.462 0.00 0.00 0.00 1.47
3715 4160 2.228059 CATGCTTGCCTGGGATTCTAG 58.772 52.381 0.00 0.00 0.00 2.43
3726 4171 5.128919 CCTGGGATTCTAGAAATGTTGAGG 58.871 45.833 9.71 6.73 0.00 3.86
3727 4172 4.526970 TGGGATTCTAGAAATGTTGAGGC 58.473 43.478 9.71 0.00 0.00 4.70
3728 4173 4.228210 TGGGATTCTAGAAATGTTGAGGCT 59.772 41.667 9.71 0.00 0.00 4.58
3729 4174 5.196695 GGGATTCTAGAAATGTTGAGGCTT 58.803 41.667 9.71 0.00 0.00 4.35
3731 4176 5.298026 GGATTCTAGAAATGTTGAGGCTTCC 59.702 44.000 9.71 3.54 0.00 3.46
3732 4177 5.505181 TTCTAGAAATGTTGAGGCTTCCT 57.495 39.130 1.68 0.00 36.03 3.36
3733 4178 5.505181 TCTAGAAATGTTGAGGCTTCCTT 57.495 39.130 0.00 0.00 31.76 3.36
3734 4179 5.880901 TCTAGAAATGTTGAGGCTTCCTTT 58.119 37.500 0.00 0.00 31.76 3.11
3735 4180 4.861102 AGAAATGTTGAGGCTTCCTTTG 57.139 40.909 0.00 0.00 31.76 2.77
3736 4181 3.575687 AGAAATGTTGAGGCTTCCTTTGG 59.424 43.478 0.00 0.00 31.76 3.28
3737 4182 2.683211 ATGTTGAGGCTTCCTTTGGT 57.317 45.000 0.00 0.00 31.76 3.67
3738 4183 2.452600 TGTTGAGGCTTCCTTTGGTT 57.547 45.000 0.00 0.00 31.76 3.67
3739 4184 2.745968 TGTTGAGGCTTCCTTTGGTTT 58.254 42.857 0.00 0.00 31.76 3.27
3740 4185 2.430332 TGTTGAGGCTTCCTTTGGTTTG 59.570 45.455 0.00 0.00 31.76 2.93
3741 4186 2.430694 GTTGAGGCTTCCTTTGGTTTGT 59.569 45.455 0.00 0.00 31.76 2.83
3742 4187 3.586470 TGAGGCTTCCTTTGGTTTGTA 57.414 42.857 0.00 0.00 31.76 2.41
3743 4188 3.486383 TGAGGCTTCCTTTGGTTTGTAG 58.514 45.455 0.00 0.00 31.76 2.74
3744 4189 2.820197 GAGGCTTCCTTTGGTTTGTAGG 59.180 50.000 0.00 0.00 31.76 3.18
3745 4190 1.893137 GGCTTCCTTTGGTTTGTAGGG 59.107 52.381 0.00 0.00 0.00 3.53
3746 4191 2.594131 GCTTCCTTTGGTTTGTAGGGT 58.406 47.619 0.00 0.00 0.00 4.34
3747 4192 2.963101 GCTTCCTTTGGTTTGTAGGGTT 59.037 45.455 0.00 0.00 0.00 4.11
3748 4193 3.386726 GCTTCCTTTGGTTTGTAGGGTTT 59.613 43.478 0.00 0.00 0.00 3.27
3749 4194 4.141801 GCTTCCTTTGGTTTGTAGGGTTTT 60.142 41.667 0.00 0.00 0.00 2.43
3750 4195 5.628200 GCTTCCTTTGGTTTGTAGGGTTTTT 60.628 40.000 0.00 0.00 0.00 1.94
3751 4196 5.346181 TCCTTTGGTTTGTAGGGTTTTTG 57.654 39.130 0.00 0.00 0.00 2.44
3752 4197 4.778427 TCCTTTGGTTTGTAGGGTTTTTGT 59.222 37.500 0.00 0.00 0.00 2.83
3753 4198 5.956563 TCCTTTGGTTTGTAGGGTTTTTGTA 59.043 36.000 0.00 0.00 0.00 2.41
3754 4199 6.097129 TCCTTTGGTTTGTAGGGTTTTTGTAG 59.903 38.462 0.00 0.00 0.00 2.74
3755 4200 6.097129 CCTTTGGTTTGTAGGGTTTTTGTAGA 59.903 38.462 0.00 0.00 0.00 2.59
3756 4201 7.363968 CCTTTGGTTTGTAGGGTTTTTGTAGAA 60.364 37.037 0.00 0.00 0.00 2.10
3757 4202 7.477945 TTGGTTTGTAGGGTTTTTGTAGAAA 57.522 32.000 0.00 0.00 0.00 2.52
3758 4203 7.663043 TGGTTTGTAGGGTTTTTGTAGAAAT 57.337 32.000 0.00 0.00 0.00 2.17
3759 4204 8.080363 TGGTTTGTAGGGTTTTTGTAGAAATT 57.920 30.769 0.00 0.00 0.00 1.82
3760 4205 8.198778 TGGTTTGTAGGGTTTTTGTAGAAATTC 58.801 33.333 0.00 0.00 0.00 2.17
3761 4206 8.418662 GGTTTGTAGGGTTTTTGTAGAAATTCT 58.581 33.333 0.00 0.00 0.00 2.40
3790 4235 9.797642 AGGATAGAATTTGCAAAGGAAAAATTT 57.202 25.926 18.19 4.06 34.51 1.82
3800 4245 9.847706 TTGCAAAGGAAAAATTTCTTTAAAACC 57.152 25.926 0.00 0.00 35.74 3.27
3801 4246 8.462811 TGCAAAGGAAAAATTTCTTTAAAACCC 58.537 29.630 4.02 0.00 35.74 4.11
3802 4247 8.682710 GCAAAGGAAAAATTTCTTTAAAACCCT 58.317 29.630 4.02 0.00 35.74 4.34
3806 4251 9.184523 AGGAAAAATTTCTTTAAAACCCTTTGG 57.815 29.630 5.91 0.00 37.35 3.28
3807 4252 8.962679 GGAAAAATTTCTTTAAAACCCTTTGGT 58.037 29.630 5.91 0.00 41.01 3.67
3819 4264 3.506398 ACCCTTTGGTTTGTAGGAATGG 58.494 45.455 0.00 0.00 44.75 3.16
3820 4265 3.141272 ACCCTTTGGTTTGTAGGAATGGA 59.859 43.478 0.00 0.00 44.75 3.41
3821 4266 4.202781 ACCCTTTGGTTTGTAGGAATGGAT 60.203 41.667 0.00 0.00 44.75 3.41
3822 4267 4.777366 CCCTTTGGTTTGTAGGAATGGATT 59.223 41.667 0.00 0.00 0.00 3.01
3823 4268 5.105351 CCCTTTGGTTTGTAGGAATGGATTC 60.105 44.000 0.00 0.00 36.08 2.52
3895 4340 7.396540 AAAAACATTAGCCTAGACTCAATGG 57.603 36.000 0.00 0.00 32.20 3.16
3896 4341 5.957771 AACATTAGCCTAGACTCAATGGA 57.042 39.130 0.00 0.00 32.20 3.41
3897 4342 5.957771 ACATTAGCCTAGACTCAATGGAA 57.042 39.130 0.00 0.00 32.20 3.53
3898 4343 6.313519 ACATTAGCCTAGACTCAATGGAAA 57.686 37.500 0.00 0.00 32.20 3.13
3899 4344 6.721318 ACATTAGCCTAGACTCAATGGAAAA 58.279 36.000 0.00 0.00 32.20 2.29
3900 4345 7.175104 ACATTAGCCTAGACTCAATGGAAAAA 58.825 34.615 0.00 0.00 32.20 1.94
3923 4368 9.991906 AAAAATCCTATTCTATGCATCAAATGG 57.008 29.630 0.19 6.42 0.00 3.16
3924 4369 8.716674 AAATCCTATTCTATGCATCAAATGGT 57.283 30.769 0.19 0.00 0.00 3.55
3925 4370 9.812347 AAATCCTATTCTATGCATCAAATGGTA 57.188 29.630 0.19 0.00 0.00 3.25
3926 4371 9.986157 AATCCTATTCTATGCATCAAATGGTAT 57.014 29.630 0.19 0.00 0.00 2.73
3927 4372 9.624373 ATCCTATTCTATGCATCAAATGGTATC 57.376 33.333 0.19 0.00 0.00 2.24
3928 4373 8.829746 TCCTATTCTATGCATCAAATGGTATCT 58.170 33.333 0.19 0.00 0.00 1.98
3929 4374 9.107177 CCTATTCTATGCATCAAATGGTATCTC 57.893 37.037 0.19 0.00 0.00 2.75
3930 4375 9.662947 CTATTCTATGCATCAAATGGTATCTCA 57.337 33.333 0.19 0.00 0.00 3.27
3932 4377 8.929260 TTCTATGCATCAAATGGTATCTCATT 57.071 30.769 0.19 0.00 38.84 2.57
3933 4378 8.929260 TCTATGCATCAAATGGTATCTCATTT 57.071 30.769 0.19 0.00 45.11 2.32
3934 4379 9.358406 TCTATGCATCAAATGGTATCTCATTTT 57.642 29.630 0.19 0.00 42.63 1.82
3935 4380 9.976511 CTATGCATCAAATGGTATCTCATTTTT 57.023 29.630 0.19 0.00 42.63 1.94
3958 4403 9.438228 TTTTTATAGGAATTGACATACACGTCA 57.562 29.630 0.00 0.00 44.05 4.35
3959 4404 9.607988 TTTTATAGGAATTGACATACACGTCAT 57.392 29.630 0.00 0.00 45.03 3.06
3960 4405 8.812147 TTATAGGAATTGACATACACGTCATC 57.188 34.615 0.00 0.00 45.03 2.92
3961 4406 5.344743 AGGAATTGACATACACGTCATCT 57.655 39.130 0.00 0.00 45.03 2.90
3962 4407 5.352284 AGGAATTGACATACACGTCATCTC 58.648 41.667 0.00 0.00 45.03 2.75
3963 4408 5.105351 AGGAATTGACATACACGTCATCTCA 60.105 40.000 0.00 0.00 45.03 3.27
3964 4409 5.005779 GGAATTGACATACACGTCATCTCAC 59.994 44.000 0.00 0.00 45.03 3.51
3965 4410 4.783764 TTGACATACACGTCATCTCACT 57.216 40.909 0.00 0.00 45.03 3.41
3966 4411 4.783764 TGACATACACGTCATCTCACTT 57.216 40.909 0.00 0.00 40.94 3.16
3967 4412 4.733850 TGACATACACGTCATCTCACTTC 58.266 43.478 0.00 0.00 40.94 3.01
3968 4413 4.459337 TGACATACACGTCATCTCACTTCT 59.541 41.667 0.00 0.00 40.94 2.85
3969 4414 5.048013 TGACATACACGTCATCTCACTTCTT 60.048 40.000 0.00 0.00 40.94 2.52
3970 4415 6.150474 TGACATACACGTCATCTCACTTCTTA 59.850 38.462 0.00 0.00 40.94 2.10
3971 4416 7.101652 ACATACACGTCATCTCACTTCTTAT 57.898 36.000 0.00 0.00 0.00 1.73
3972 4417 8.221965 ACATACACGTCATCTCACTTCTTATA 57.778 34.615 0.00 0.00 0.00 0.98
3973 4418 8.683615 ACATACACGTCATCTCACTTCTTATAA 58.316 33.333 0.00 0.00 0.00 0.98
3974 4419 9.684448 CATACACGTCATCTCACTTCTTATAAT 57.316 33.333 0.00 0.00 0.00 1.28
3977 4422 9.436957 ACACGTCATCTCACTTCTTATAATTTT 57.563 29.630 0.00 0.00 0.00 1.82
3978 4423 9.907576 CACGTCATCTCACTTCTTATAATTTTC 57.092 33.333 0.00 0.00 0.00 2.29
3979 4424 9.099454 ACGTCATCTCACTTCTTATAATTTTCC 57.901 33.333 0.00 0.00 0.00 3.13
3980 4425 9.319143 CGTCATCTCACTTCTTATAATTTTCCT 57.681 33.333 0.00 0.00 0.00 3.36
4017 4462 9.969001 TTACCTAATATAATAATTGTGGAGCCC 57.031 33.333 0.00 0.00 0.00 5.19
4018 4463 7.410991 ACCTAATATAATAATTGTGGAGCCCC 58.589 38.462 0.00 0.00 0.00 5.80
4019 4464 6.833933 CCTAATATAATAATTGTGGAGCCCCC 59.166 42.308 0.00 0.00 0.00 5.40
4020 4465 2.649531 TAATAATTGTGGAGCCCCCG 57.350 50.000 0.00 0.00 37.93 5.73
4021 4466 0.923358 AATAATTGTGGAGCCCCCGA 59.077 50.000 0.00 0.00 37.93 5.14
4022 4467 1.149101 ATAATTGTGGAGCCCCCGAT 58.851 50.000 0.00 0.00 37.93 4.18
4023 4468 0.923358 TAATTGTGGAGCCCCCGATT 59.077 50.000 0.00 0.00 37.93 3.34
4024 4469 0.395724 AATTGTGGAGCCCCCGATTC 60.396 55.000 0.00 0.00 37.93 2.52
4025 4470 1.570857 ATTGTGGAGCCCCCGATTCA 61.571 55.000 0.00 0.00 37.93 2.57
4026 4471 1.784301 TTGTGGAGCCCCCGATTCAA 61.784 55.000 0.00 0.00 37.93 2.69
4027 4472 1.227383 GTGGAGCCCCCGATTCAAT 59.773 57.895 0.00 0.00 37.93 2.57
4028 4473 0.819666 GTGGAGCCCCCGATTCAATC 60.820 60.000 0.00 0.00 37.93 2.67
4044 4489 7.177498 GATTCAATCGTACACTAATCATGCA 57.823 36.000 0.00 0.00 0.00 3.96
4045 4490 5.966636 TCAATCGTACACTAATCATGCAC 57.033 39.130 0.00 0.00 0.00 4.57
4046 4491 4.502645 TCAATCGTACACTAATCATGCACG 59.497 41.667 0.00 0.00 38.02 5.34
4047 4492 2.190161 TCGTACACTAATCATGCACGC 58.810 47.619 0.00 0.00 36.88 5.34
4048 4493 1.923864 CGTACACTAATCATGCACGCA 59.076 47.619 0.00 0.00 30.70 5.24
4049 4494 2.347150 CGTACACTAATCATGCACGCAA 59.653 45.455 0.00 0.00 30.70 4.85
4050 4495 3.181525 CGTACACTAATCATGCACGCAAA 60.182 43.478 0.00 0.00 30.70 3.68
4051 4496 3.201726 ACACTAATCATGCACGCAAAC 57.798 42.857 0.00 0.00 0.00 2.93
4064 4509 2.125168 CGCAAACGTGTACGATCAAG 57.875 50.000 11.79 0.00 43.02 3.02
4065 4510 1.717113 CGCAAACGTGTACGATCAAGA 59.283 47.619 11.79 0.00 43.02 3.02
4066 4511 2.344441 CGCAAACGTGTACGATCAAGAT 59.656 45.455 11.79 0.00 43.02 2.40
4067 4512 3.539592 CGCAAACGTGTACGATCAAGATC 60.540 47.826 11.79 0.00 43.02 2.75
4068 4513 3.366724 GCAAACGTGTACGATCAAGATCA 59.633 43.478 11.79 0.00 43.02 2.92
4069 4514 4.490959 GCAAACGTGTACGATCAAGATCAG 60.491 45.833 11.79 5.82 43.02 2.90
4070 4515 3.422417 ACGTGTACGATCAAGATCAGG 57.578 47.619 11.79 0.51 43.02 3.86
4071 4516 2.099263 ACGTGTACGATCAAGATCAGGG 59.901 50.000 11.79 0.00 43.02 4.45
4072 4517 2.357952 CGTGTACGATCAAGATCAGGGA 59.642 50.000 10.39 0.00 43.02 4.20
4073 4518 3.707793 GTGTACGATCAAGATCAGGGAC 58.292 50.000 10.39 2.84 37.69 4.46
4074 4519 3.381908 GTGTACGATCAAGATCAGGGACT 59.618 47.826 10.39 0.00 43.88 3.85
4075 4520 3.632604 TGTACGATCAAGATCAGGGACTC 59.367 47.826 10.39 0.00 34.60 3.36
4076 4521 2.739943 ACGATCAAGATCAGGGACTCA 58.260 47.619 10.39 0.00 34.60 3.41
4077 4522 2.428890 ACGATCAAGATCAGGGACTCAC 59.571 50.000 10.39 0.00 34.60 3.51
4078 4523 2.542618 CGATCAAGATCAGGGACTCACG 60.543 54.545 10.39 0.00 34.60 4.35
4079 4524 1.186200 TCAAGATCAGGGACTCACGG 58.814 55.000 0.00 0.00 34.60 4.94
4080 4525 0.176680 CAAGATCAGGGACTCACGGG 59.823 60.000 0.00 0.00 34.60 5.28
4081 4526 0.041238 AAGATCAGGGACTCACGGGA 59.959 55.000 0.00 0.00 34.60 5.14
4082 4527 0.041238 AGATCAGGGACTCACGGGAA 59.959 55.000 0.00 0.00 34.60 3.97
4083 4528 0.461961 GATCAGGGACTCACGGGAAG 59.538 60.000 0.00 0.00 34.60 3.46
4084 4529 0.041238 ATCAGGGACTCACGGGAAGA 59.959 55.000 0.00 0.00 34.60 2.87
4085 4530 0.041238 TCAGGGACTCACGGGAAGAT 59.959 55.000 0.00 0.00 34.60 2.40
4086 4531 1.286849 TCAGGGACTCACGGGAAGATA 59.713 52.381 0.00 0.00 34.60 1.98
4087 4532 2.091278 TCAGGGACTCACGGGAAGATAT 60.091 50.000 0.00 0.00 34.60 1.63
4088 4533 2.297597 CAGGGACTCACGGGAAGATATC 59.702 54.545 0.00 0.00 34.60 1.63
4089 4534 2.091278 AGGGACTCACGGGAAGATATCA 60.091 50.000 5.32 0.00 0.00 2.15
4090 4535 2.036089 GGGACTCACGGGAAGATATCAC 59.964 54.545 5.32 0.00 0.00 3.06
4091 4536 2.693591 GGACTCACGGGAAGATATCACA 59.306 50.000 5.32 0.00 0.00 3.58
4092 4537 3.132289 GGACTCACGGGAAGATATCACAA 59.868 47.826 5.32 0.00 0.00 3.33
4093 4538 4.113354 GACTCACGGGAAGATATCACAAC 58.887 47.826 5.32 0.00 0.00 3.32
4094 4539 3.513912 ACTCACGGGAAGATATCACAACA 59.486 43.478 5.32 0.00 0.00 3.33
4095 4540 3.857052 TCACGGGAAGATATCACAACAC 58.143 45.455 5.32 0.00 0.00 3.32
4096 4541 3.259625 TCACGGGAAGATATCACAACACA 59.740 43.478 5.32 0.00 0.00 3.72
4097 4542 4.000325 CACGGGAAGATATCACAACACAA 59.000 43.478 5.32 0.00 0.00 3.33
4098 4543 4.000988 ACGGGAAGATATCACAACACAAC 58.999 43.478 5.32 0.00 0.00 3.32
4099 4544 4.253685 CGGGAAGATATCACAACACAACT 58.746 43.478 5.32 0.00 0.00 3.16
4100 4545 4.330074 CGGGAAGATATCACAACACAACTC 59.670 45.833 5.32 0.00 0.00 3.01
4101 4546 5.491982 GGGAAGATATCACAACACAACTCT 58.508 41.667 5.32 0.00 0.00 3.24
4102 4547 6.627287 CGGGAAGATATCACAACACAACTCTA 60.627 42.308 5.32 0.00 0.00 2.43
4103 4548 6.535508 GGGAAGATATCACAACACAACTCTAC 59.464 42.308 5.32 0.00 0.00 2.59
4104 4549 7.097192 GGAAGATATCACAACACAACTCTACA 58.903 38.462 5.32 0.00 0.00 2.74
4105 4550 7.602644 GGAAGATATCACAACACAACTCTACAA 59.397 37.037 5.32 0.00 0.00 2.41
4106 4551 8.902540 AAGATATCACAACACAACTCTACAAA 57.097 30.769 5.32 0.00 0.00 2.83
4107 4552 9.507329 AAGATATCACAACACAACTCTACAAAT 57.493 29.630 5.32 0.00 0.00 2.32
4139 4584 8.092521 AGTCATACAAGCATCATAATACAAGC 57.907 34.615 0.00 0.00 0.00 4.01
4140 4585 7.173907 AGTCATACAAGCATCATAATACAAGCC 59.826 37.037 0.00 0.00 0.00 4.35
4141 4586 6.997476 TCATACAAGCATCATAATACAAGCCA 59.003 34.615 0.00 0.00 0.00 4.75
4142 4587 5.762825 ACAAGCATCATAATACAAGCCAG 57.237 39.130 0.00 0.00 0.00 4.85
4143 4588 4.581824 ACAAGCATCATAATACAAGCCAGG 59.418 41.667 0.00 0.00 0.00 4.45
4144 4589 3.759581 AGCATCATAATACAAGCCAGGG 58.240 45.455 0.00 0.00 0.00 4.45
4145 4590 2.821969 GCATCATAATACAAGCCAGGGG 59.178 50.000 0.00 0.00 0.00 4.79
4169 4614 1.291132 GAGGGCTCGAATACAAGTGC 58.709 55.000 0.00 0.00 0.00 4.40
4170 4615 0.905357 AGGGCTCGAATACAAGTGCT 59.095 50.000 0.00 0.00 0.00 4.40
4171 4616 1.134670 AGGGCTCGAATACAAGTGCTC 60.135 52.381 0.00 0.00 0.00 4.26
4172 4617 0.924090 GGCTCGAATACAAGTGCTCG 59.076 55.000 0.00 0.00 0.00 5.03
4173 4618 1.469251 GGCTCGAATACAAGTGCTCGA 60.469 52.381 7.80 7.80 37.95 4.04
4174 4619 2.464865 GCTCGAATACAAGTGCTCGAT 58.535 47.619 8.31 0.00 39.39 3.59
4175 4620 2.469516 GCTCGAATACAAGTGCTCGATC 59.530 50.000 8.31 2.80 39.39 3.69
4176 4621 3.695816 CTCGAATACAAGTGCTCGATCA 58.304 45.455 8.31 0.00 39.39 2.92
4177 4622 4.294232 CTCGAATACAAGTGCTCGATCAT 58.706 43.478 8.31 0.00 39.39 2.45
4178 4623 5.432885 TCGAATACAAGTGCTCGATCATA 57.567 39.130 0.00 0.00 35.52 2.15
4179 4624 5.452777 TCGAATACAAGTGCTCGATCATAG 58.547 41.667 0.00 0.00 35.52 2.23
4180 4625 5.238650 TCGAATACAAGTGCTCGATCATAGA 59.761 40.000 0.00 0.00 35.52 1.98
4181 4626 5.340932 CGAATACAAGTGCTCGATCATAGAC 59.659 44.000 0.00 0.00 33.13 2.59
4182 4627 3.071786 ACAAGTGCTCGATCATAGACG 57.928 47.619 0.00 0.00 0.00 4.18
4183 4628 2.683362 ACAAGTGCTCGATCATAGACGA 59.317 45.455 0.00 0.00 37.03 4.20
4189 4634 3.181826 CTCGATCATAGACGAGTCAGC 57.818 52.381 5.99 0.00 46.90 4.26
4190 4635 1.527311 TCGATCATAGACGAGTCAGCG 59.473 52.381 5.99 0.00 34.49 5.18
4191 4636 1.399087 CGATCATAGACGAGTCAGCGG 60.399 57.143 5.99 0.00 35.12 5.52
4192 4637 1.874231 GATCATAGACGAGTCAGCGGA 59.126 52.381 5.99 0.00 35.12 5.54
4193 4638 1.746470 TCATAGACGAGTCAGCGGAA 58.254 50.000 5.99 0.00 35.12 4.30
4194 4639 1.671328 TCATAGACGAGTCAGCGGAAG 59.329 52.381 5.99 0.00 35.12 3.46
4211 4656 5.643339 CGGAAGCAACAATATCTGAGTAC 57.357 43.478 0.00 0.00 0.00 2.73
4212 4657 5.109210 CGGAAGCAACAATATCTGAGTACA 58.891 41.667 0.00 0.00 0.00 2.90
4213 4658 5.233050 CGGAAGCAACAATATCTGAGTACAG 59.767 44.000 0.00 0.00 44.66 2.74
4229 4674 9.692749 TCTGAGTACAGACATAAGTTAAACAAG 57.307 33.333 0.00 0.00 46.55 3.16
4230 4675 9.477484 CTGAGTACAGACATAAGTTAAACAAGT 57.523 33.333 0.00 0.00 46.03 3.16
4231 4676 9.826574 TGAGTACAGACATAAGTTAAACAAGTT 57.173 29.630 0.00 0.00 0.00 2.66
4233 4678 8.557029 AGTACAGACATAAGTTAAACAAGTTGC 58.443 33.333 1.81 0.00 0.00 4.17
4234 4679 6.735130 ACAGACATAAGTTAAACAAGTTGCC 58.265 36.000 1.81 0.00 0.00 4.52
4235 4680 6.320164 ACAGACATAAGTTAAACAAGTTGCCA 59.680 34.615 1.81 0.00 0.00 4.92
4236 4681 7.014230 ACAGACATAAGTTAAACAAGTTGCCAT 59.986 33.333 1.81 0.00 0.00 4.40
4237 4682 8.511321 CAGACATAAGTTAAACAAGTTGCCATA 58.489 33.333 1.81 0.00 0.00 2.74
4238 4683 9.073475 AGACATAAGTTAAACAAGTTGCCATAA 57.927 29.630 1.81 0.00 0.00 1.90
4239 4684 9.341899 GACATAAGTTAAACAAGTTGCCATAAG 57.658 33.333 1.81 0.00 0.00 1.73
4240 4685 9.073475 ACATAAGTTAAACAAGTTGCCATAAGA 57.927 29.630 1.81 0.00 0.00 2.10
4256 4701 5.883661 CCATAAGATGGCTAACACAAACTG 58.116 41.667 0.00 0.00 44.70 3.16
4257 4702 5.163622 CCATAAGATGGCTAACACAAACTGG 60.164 44.000 0.00 0.00 44.70 4.00
4258 4703 2.795329 AGATGGCTAACACAAACTGGG 58.205 47.619 0.00 0.00 0.00 4.45
4259 4704 2.375174 AGATGGCTAACACAAACTGGGA 59.625 45.455 0.00 0.00 0.00 4.37
4260 4705 2.969821 TGGCTAACACAAACTGGGAT 57.030 45.000 0.00 0.00 0.00 3.85
4261 4706 4.227300 AGATGGCTAACACAAACTGGGATA 59.773 41.667 0.00 0.00 0.00 2.59
4262 4707 3.681593 TGGCTAACACAAACTGGGATAC 58.318 45.455 0.00 0.00 0.00 2.24
4263 4708 3.073209 TGGCTAACACAAACTGGGATACA 59.927 43.478 0.00 0.00 39.74 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 1.625315 CCTCAACACCTCAGGACATCA 59.375 52.381 0.00 0.00 0.00 3.07
39 40 1.065854 CCCTCAACACCTCAGGACATC 60.066 57.143 0.00 0.00 0.00 3.06
52 53 2.747855 CCGCCTCAAGCCCTCAAC 60.748 66.667 0.00 0.00 38.78 3.18
59 60 4.774503 AGCAGAGCCGCCTCAAGC 62.775 66.667 0.00 0.00 40.68 4.01
60 61 2.511145 GAGCAGAGCCGCCTCAAG 60.511 66.667 0.00 0.00 40.68 3.02
61 62 2.793160 CTTGAGCAGAGCCGCCTCAA 62.793 60.000 8.81 8.81 40.68 3.02
63 64 2.511145 CTTGAGCAGAGCCGCCTC 60.511 66.667 0.00 0.00 38.42 4.70
64 65 2.403132 AAACTTGAGCAGAGCCGCCT 62.403 55.000 0.00 0.00 0.00 5.52
65 66 1.916697 GAAACTTGAGCAGAGCCGCC 61.917 60.000 0.00 0.00 0.00 6.13
68 69 0.952984 AGCGAAACTTGAGCAGAGCC 60.953 55.000 0.00 0.00 0.00 4.70
69 70 0.441921 GAGCGAAACTTGAGCAGAGC 59.558 55.000 0.00 0.00 0.00 4.09
70 71 0.712775 CGAGCGAAACTTGAGCAGAG 59.287 55.000 0.00 0.00 30.27 3.35
71 72 0.667487 CCGAGCGAAACTTGAGCAGA 60.667 55.000 0.00 0.00 30.27 4.26
72 73 0.946221 ACCGAGCGAAACTTGAGCAG 60.946 55.000 0.00 0.00 30.27 4.24
73 74 1.069090 ACCGAGCGAAACTTGAGCA 59.931 52.632 0.00 0.00 30.27 4.26
74 75 1.493311 CACCGAGCGAAACTTGAGC 59.507 57.895 0.00 0.00 30.27 4.26
75 76 0.600255 ACCACCGAGCGAAACTTGAG 60.600 55.000 0.00 0.00 30.27 3.02
76 77 0.179067 AACCACCGAGCGAAACTTGA 60.179 50.000 0.00 0.00 30.27 3.02
77 78 0.234884 GAACCACCGAGCGAAACTTG 59.765 55.000 0.00 0.00 0.00 3.16
78 79 0.883370 GGAACCACCGAGCGAAACTT 60.883 55.000 0.00 0.00 0.00 2.66
79 80 1.301479 GGAACCACCGAGCGAAACT 60.301 57.895 0.00 0.00 0.00 2.66
84 85 4.760047 CCCAGGAACCACCGAGCG 62.760 72.222 0.00 0.00 44.74 5.03
96 97 0.682209 CAAATCACCAGCTCCCCAGG 60.682 60.000 0.00 0.00 0.00 4.45
108 109 2.102578 CCCAATCCTCCACCAAATCAC 58.897 52.381 0.00 0.00 0.00 3.06
217 222 4.048504 ACACGCAGCAAAAGGAAAATAAC 58.951 39.130 0.00 0.00 0.00 1.89
239 251 4.079253 GAGACCAATTTCAGCCAGGTTAA 58.921 43.478 0.00 0.00 31.57 2.01
311 323 2.032979 GCAAATTGAAACAAAGCCACCG 60.033 45.455 0.00 0.00 0.00 4.94
312 324 3.205338 AGCAAATTGAAACAAAGCCACC 58.795 40.909 0.00 0.00 0.00 4.61
345 357 0.031716 TAGAGTCAGGCTGCAGGGAT 60.032 55.000 17.12 0.00 0.00 3.85
349 361 3.196463 CATTTCTAGAGTCAGGCTGCAG 58.804 50.000 10.11 10.11 0.00 4.41
355 367 5.799213 ACTCCAAACATTTCTAGAGTCAGG 58.201 41.667 0.00 0.00 28.69 3.86
359 371 7.227512 CAGACAAACTCCAAACATTTCTAGAGT 59.772 37.037 0.00 0.00 36.17 3.24
400 412 4.959596 GCTCTGAAGATTCATGAGCAAA 57.040 40.909 25.44 0.00 46.16 3.68
403 415 5.274718 CAAATGCTCTGAAGATTCATGAGC 58.725 41.667 24.56 24.56 46.56 4.26
404 416 5.274718 GCAAATGCTCTGAAGATTCATGAG 58.725 41.667 13.30 13.30 35.82 2.90
461 473 4.124851 AGCTAGTACAAATTCAGACCGG 57.875 45.455 0.00 0.00 0.00 5.28
492 504 6.672266 TCACACCTAGATCTCTCTGTTTTT 57.328 37.500 0.00 0.00 32.66 1.94
511 523 4.772624 ACAGCTCCTAGTTCATAGTTCACA 59.227 41.667 0.00 0.00 0.00 3.58
547 560 8.261492 AGACAGTTTACAGCATCTTCTTTATG 57.739 34.615 0.00 0.00 0.00 1.90
551 564 5.471456 CCAAGACAGTTTACAGCATCTTCTT 59.529 40.000 0.00 0.00 0.00 2.52
567 580 4.916983 TGGAACAAATTCACCAAGACAG 57.083 40.909 0.00 0.00 36.46 3.51
579 592 7.218614 TCAATCTTGAGCAAATTGGAACAAAT 58.781 30.769 0.00 0.00 36.61 2.32
654 667 7.373441 GCTCGGAAATTTCATAATCAAACTACG 59.627 37.037 19.49 8.96 0.00 3.51
770 791 2.561419 GCAGTGAGTGTACCTCCAAGTA 59.439 50.000 0.00 0.00 39.65 2.24
869 1285 9.416794 CTGAAGCTGGAACTAATAGTGTATATG 57.583 37.037 0.00 0.00 0.00 1.78
934 1350 4.021368 ACTGAACCAGCACTAGTTCGTATT 60.021 41.667 0.00 0.00 44.29 1.89
938 1354 2.440539 ACTGAACCAGCACTAGTTCG 57.559 50.000 0.00 3.09 44.29 3.95
951 1367 1.677217 CCTTGGAGGCAGCTACTGAAC 60.677 57.143 0.00 0.00 32.44 3.18
955 1371 1.229658 ACCCTTGGAGGCAGCTACT 60.230 57.895 0.00 0.00 32.73 2.57
957 1373 1.229496 TGACCCTTGGAGGCAGCTA 60.229 57.895 0.00 0.00 32.73 3.32
962 1378 2.352805 CCAGTGACCCTTGGAGGC 59.647 66.667 0.00 0.00 36.55 4.70
969 1385 1.958288 AGCTTATGACCAGTGACCCT 58.042 50.000 0.00 0.00 0.00 4.34
995 1413 5.829924 CCAACCTTGAAGTCTGCCATATTAT 59.170 40.000 0.00 0.00 0.00 1.28
996 1414 5.045213 TCCAACCTTGAAGTCTGCCATATTA 60.045 40.000 0.00 0.00 0.00 0.98
998 1416 3.266772 TCCAACCTTGAAGTCTGCCATAT 59.733 43.478 0.00 0.00 0.00 1.78
999 1417 2.642311 TCCAACCTTGAAGTCTGCCATA 59.358 45.455 0.00 0.00 0.00 2.74
1059 1477 1.615919 CCTTCCGGGGTAACAGCAATT 60.616 52.381 0.00 0.00 39.74 2.32
1098 1516 0.827925 TCTTCTGGAGCACGGTCTGT 60.828 55.000 0.00 0.00 0.00 3.41
1158 1576 3.785859 GACGCAGGAGGGGATGCA 61.786 66.667 0.00 0.00 42.68 3.96
1233 1651 1.609320 GCTCTGGACCTTGTTGGAGTC 60.609 57.143 0.00 0.00 39.71 3.36
1299 1717 2.106683 CGCCTTCGGTGGATTGGAC 61.107 63.158 0.00 0.00 0.00 4.02
1331 1749 5.243954 ACAGATATCTTATGCTGCTTCGGTA 59.756 40.000 1.33 0.00 31.74 4.02
1359 1777 5.702670 GTCACTCATCTCAATCTGACCAAAA 59.297 40.000 0.00 0.00 0.00 2.44
1413 1831 3.250762 GCACACTCATCTTTACAGCAACA 59.749 43.478 0.00 0.00 0.00 3.33
1422 1840 3.947196 TGTTCTTGTGCACACTCATCTTT 59.053 39.130 21.56 0.00 0.00 2.52
1473 1891 3.201290 AGATTGCCTTGACAGCTTATCG 58.799 45.455 0.00 0.00 31.55 2.92
1482 1900 2.079925 GACACTGGAGATTGCCTTGAC 58.920 52.381 0.00 0.00 0.00 3.18
1788 2208 6.238648 GCACTAACTTAAAGCACCAGAAAGAA 60.239 38.462 0.00 0.00 0.00 2.52
1790 2210 5.008613 TGCACTAACTTAAAGCACCAGAAAG 59.991 40.000 0.00 0.00 0.00 2.62
1794 2214 4.829064 TTGCACTAACTTAAAGCACCAG 57.171 40.909 0.00 0.00 34.56 4.00
1821 2243 4.635558 AAAAGGCCCCCATATTAAGGAA 57.364 40.909 0.00 0.00 0.00 3.36
1822 2244 4.635558 AAAAAGGCCCCCATATTAAGGA 57.364 40.909 0.00 0.00 0.00 3.36
1864 2290 6.492007 ACACATGACAAGCTTCTAGATTTG 57.508 37.500 0.00 2.11 0.00 2.32
2102 2530 2.578786 TGCATTATCAGTCATGGGCTG 58.421 47.619 10.62 10.62 35.43 4.85
2230 2665 7.679783 TCTGAAGATTCTAAGTTGGTCATTCA 58.320 34.615 0.00 0.00 0.00 2.57
2244 2679 5.075493 AGGTGCATTTGTTCTGAAGATTCT 58.925 37.500 0.00 0.00 0.00 2.40
2271 2706 4.856487 CGAACAGCAAACAGAAGTTGAAAA 59.144 37.500 0.00 0.00 38.17 2.29
2272 2707 4.411327 CGAACAGCAAACAGAAGTTGAAA 58.589 39.130 0.00 0.00 38.17 2.69
2314 2751 5.720202 TGTTCTGCAACCTGTACAGTATAG 58.280 41.667 21.18 8.57 33.12 1.31
2336 2773 1.545582 ACATGCTCGGAAACCCAAATG 59.454 47.619 0.00 0.00 0.00 2.32
2337 2774 1.545582 CACATGCTCGGAAACCCAAAT 59.454 47.619 0.00 0.00 0.00 2.32
2338 2775 0.958091 CACATGCTCGGAAACCCAAA 59.042 50.000 0.00 0.00 0.00 3.28
2539 2976 4.276678 CCTCTGTCATCACTGCTTTTCAAA 59.723 41.667 0.00 0.00 0.00 2.69
2641 3078 2.234908 GCTGTAGAGGGTCTCAACACAT 59.765 50.000 0.00 0.00 32.06 3.21
2653 3090 3.827008 TTCTGGCAATAGCTGTAGAGG 57.173 47.619 0.00 0.00 41.70 3.69
2687 3124 1.679139 TGTTGAAACAGGGTCAGCAG 58.321 50.000 0.00 0.00 32.13 4.24
2704 3141 2.645838 AACCACTGTCAGATGCTTGT 57.354 45.000 6.91 0.00 0.00 3.16
2721 3158 3.733337 TCCAAAGACTGCTCAGAGAAAC 58.267 45.455 0.00 0.00 0.00 2.78
2739 3176 1.002773 GAACCGGTTCCTTAAGCTCCA 59.997 52.381 33.02 0.00 33.64 3.86
2773 3210 5.461526 CATAACAGATTATCCGCTTCGAGA 58.538 41.667 0.00 0.00 0.00 4.04
2791 3228 5.124936 AGCCAAAATCTCGGTTAACCATAAC 59.875 40.000 24.14 0.00 40.60 1.89
2792 3229 5.124776 CAGCCAAAATCTCGGTTAACCATAA 59.875 40.000 24.14 8.72 35.14 1.90
2794 3231 3.443681 CAGCCAAAATCTCGGTTAACCAT 59.556 43.478 24.14 7.75 35.14 3.55
2881 3318 1.001633 GACTTGGTCGGTAGCTTGGAA 59.998 52.381 0.00 0.00 0.00 3.53
3166 3603 2.116125 AGGTTGGGGCAGCTGTTC 59.884 61.111 16.64 8.10 0.00 3.18
3271 3708 0.250234 CAAGCCACCGGAGATCTCAA 59.750 55.000 23.85 0.00 0.00 3.02
3342 3784 8.715088 ACACAAATCAACTTATACGACTAAACC 58.285 33.333 0.00 0.00 0.00 3.27
3378 3820 1.913403 GCACAGCGCACAAACATATTC 59.087 47.619 11.47 0.00 41.79 1.75
3405 3847 1.627550 GCGAAGACCCGAAGAAGCAC 61.628 60.000 0.00 0.00 0.00 4.40
3417 3859 2.864968 ACTTGACGTATCAGCGAAGAC 58.135 47.619 0.00 0.00 35.83 3.01
3433 3875 5.123027 GGTAAGCCAGAATTCAGAGAACTTG 59.877 44.000 8.44 0.00 34.09 3.16
3484 3926 4.699637 ACAAACTGATGTCTCGTGGTAAA 58.300 39.130 0.00 0.00 0.00 2.01
3528 3970 0.685097 ACCACTACCGCACAATGTCT 59.315 50.000 0.00 0.00 0.00 3.41
3543 3985 3.063452 CCGCAATAATACAGTGTCACCAC 59.937 47.826 0.00 0.00 42.17 4.16
3571 4013 3.499537 TCACAAGCATGCAGTTTCTACAG 59.500 43.478 21.98 4.54 0.00 2.74
3583 4025 6.656314 ATTTACAATTGCATCACAAGCATG 57.344 33.333 5.05 0.00 42.87 4.06
3715 4160 3.321968 ACCAAAGGAAGCCTCAACATTTC 59.678 43.478 0.00 0.00 30.89 2.17
3726 4171 2.594131 ACCCTACAAACCAAAGGAAGC 58.406 47.619 0.00 0.00 31.64 3.86
3727 4172 5.607939 AAAACCCTACAAACCAAAGGAAG 57.392 39.130 0.00 0.00 31.64 3.46
3728 4173 5.248705 ACAAAAACCCTACAAACCAAAGGAA 59.751 36.000 0.00 0.00 31.64 3.36
3729 4174 4.778427 ACAAAAACCCTACAAACCAAAGGA 59.222 37.500 0.00 0.00 31.64 3.36
3731 4176 7.102847 TCTACAAAAACCCTACAAACCAAAG 57.897 36.000 0.00 0.00 0.00 2.77
3732 4177 7.477945 TTCTACAAAAACCCTACAAACCAAA 57.522 32.000 0.00 0.00 0.00 3.28
3733 4178 7.477945 TTTCTACAAAAACCCTACAAACCAA 57.522 32.000 0.00 0.00 0.00 3.67
3734 4179 7.663043 ATTTCTACAAAAACCCTACAAACCA 57.337 32.000 0.00 0.00 0.00 3.67
3735 4180 8.418662 AGAATTTCTACAAAAACCCTACAAACC 58.581 33.333 0.00 0.00 0.00 3.27
3764 4209 9.797642 AAATTTTTCCTTTGCAAATTCTATCCT 57.202 25.926 13.23 0.00 30.50 3.24
3774 4219 9.847706 GGTTTTAAAGAAATTTTTCCTTTGCAA 57.152 25.926 11.62 0.00 37.92 4.08
3775 4220 8.462811 GGGTTTTAAAGAAATTTTTCCTTTGCA 58.537 29.630 11.62 0.00 37.92 4.08
3776 4221 8.682710 AGGGTTTTAAAGAAATTTTTCCTTTGC 58.317 29.630 11.62 2.88 37.92 3.68
3780 4225 9.184523 CCAAAGGGTTTTAAAGAAATTTTTCCT 57.815 29.630 0.00 0.00 37.92 3.36
3799 4244 3.773560 TCCATTCCTACAAACCAAAGGG 58.226 45.455 0.00 0.00 41.29 3.95
3800 4245 5.965922 GAATCCATTCCTACAAACCAAAGG 58.034 41.667 0.00 0.00 0.00 3.11
3842 4287 7.124147 TCCTCCAAAATGTGAAGGATTAATTCC 59.876 37.037 0.00 0.00 45.85 3.01
3843 4288 8.066612 TCCTCCAAAATGTGAAGGATTAATTC 57.933 34.615 0.00 0.00 0.00 2.17
3844 4289 8.434589 TTCCTCCAAAATGTGAAGGATTAATT 57.565 30.769 0.00 0.00 0.00 1.40
3845 4290 8.434589 TTTCCTCCAAAATGTGAAGGATTAAT 57.565 30.769 0.00 0.00 0.00 1.40
3846 4291 7.847711 TTTCCTCCAAAATGTGAAGGATTAA 57.152 32.000 0.00 0.00 0.00 1.40
3847 4292 7.847711 TTTTCCTCCAAAATGTGAAGGATTA 57.152 32.000 0.00 0.00 0.00 1.75
3848 4293 6.745794 TTTTCCTCCAAAATGTGAAGGATT 57.254 33.333 0.00 0.00 0.00 3.01
3849 4294 6.745794 TTTTTCCTCCAAAATGTGAAGGAT 57.254 33.333 0.00 0.00 33.82 3.24
3871 4316 7.175104 TCCATTGAGTCTAGGCTAATGTTTTT 58.825 34.615 17.62 0.00 0.00 1.94
3872 4317 6.721318 TCCATTGAGTCTAGGCTAATGTTTT 58.279 36.000 17.62 0.00 0.00 2.43
3873 4318 6.313519 TCCATTGAGTCTAGGCTAATGTTT 57.686 37.500 17.62 0.00 0.00 2.83
3874 4319 5.957771 TCCATTGAGTCTAGGCTAATGTT 57.042 39.130 17.62 0.00 0.00 2.71
3875 4320 5.957771 TTCCATTGAGTCTAGGCTAATGT 57.042 39.130 17.62 0.00 0.00 2.71
3876 4321 7.630242 TTTTTCCATTGAGTCTAGGCTAATG 57.370 36.000 0.00 8.01 0.00 1.90
3897 4342 9.991906 CCATTTGATGCATAGAATAGGATTTTT 57.008 29.630 0.00 0.00 0.00 1.94
3898 4343 9.151177 ACCATTTGATGCATAGAATAGGATTTT 57.849 29.630 18.79 5.17 0.00 1.82
3899 4344 8.716674 ACCATTTGATGCATAGAATAGGATTT 57.283 30.769 18.79 5.38 0.00 2.17
3900 4345 9.986157 ATACCATTTGATGCATAGAATAGGATT 57.014 29.630 18.79 9.99 0.00 3.01
3901 4346 9.624373 GATACCATTTGATGCATAGAATAGGAT 57.376 33.333 18.79 10.99 0.00 3.24
3902 4347 8.829746 AGATACCATTTGATGCATAGAATAGGA 58.170 33.333 18.79 7.93 0.00 2.94
3903 4348 9.107177 GAGATACCATTTGATGCATAGAATAGG 57.893 37.037 0.00 9.54 0.00 2.57
3904 4349 9.662947 TGAGATACCATTTGATGCATAGAATAG 57.337 33.333 0.00 0.00 0.00 1.73
3906 4351 9.529823 AATGAGATACCATTTGATGCATAGAAT 57.470 29.630 0.00 0.00 33.29 2.40
3907 4352 8.929260 AATGAGATACCATTTGATGCATAGAA 57.071 30.769 0.00 0.00 33.29 2.10
3908 4353 8.929260 AAATGAGATACCATTTGATGCATAGA 57.071 30.769 0.00 0.00 43.00 1.98
3909 4354 9.976511 AAAAATGAGATACCATTTGATGCATAG 57.023 29.630 0.00 0.00 43.61 2.23
3932 4377 9.438228 TGACGTGTATGTCAATTCCTATAAAAA 57.562 29.630 4.52 0.00 45.40 1.94
3946 4391 4.987832 AGAAGTGAGATGACGTGTATGTC 58.012 43.478 0.00 0.00 39.37 3.06
3947 4392 5.392767 AAGAAGTGAGATGACGTGTATGT 57.607 39.130 0.00 0.00 0.00 2.29
3948 4393 9.684448 ATTATAAGAAGTGAGATGACGTGTATG 57.316 33.333 0.00 0.00 0.00 2.39
3951 4396 9.436957 AAAATTATAAGAAGTGAGATGACGTGT 57.563 29.630 0.00 0.00 0.00 4.49
3952 4397 9.907576 GAAAATTATAAGAAGTGAGATGACGTG 57.092 33.333 0.00 0.00 0.00 4.49
3953 4398 9.099454 GGAAAATTATAAGAAGTGAGATGACGT 57.901 33.333 0.00 0.00 0.00 4.34
3954 4399 9.319143 AGGAAAATTATAAGAAGTGAGATGACG 57.681 33.333 0.00 0.00 0.00 4.35
3991 4436 9.969001 GGGCTCCACAATTATTATATTAGGTAA 57.031 33.333 0.00 0.00 0.00 2.85
3992 4437 8.554011 GGGGCTCCACAATTATTATATTAGGTA 58.446 37.037 0.00 0.00 0.00 3.08
3993 4438 7.410991 GGGGCTCCACAATTATTATATTAGGT 58.589 38.462 0.00 0.00 0.00 3.08
3994 4439 6.833933 GGGGGCTCCACAATTATTATATTAGG 59.166 42.308 4.16 0.00 35.00 2.69
3995 4440 6.542370 CGGGGGCTCCACAATTATTATATTAG 59.458 42.308 4.16 0.00 34.36 1.73
3996 4441 6.215841 TCGGGGGCTCCACAATTATTATATTA 59.784 38.462 4.16 0.00 34.36 0.98
3997 4442 5.014755 TCGGGGGCTCCACAATTATTATATT 59.985 40.000 4.16 0.00 34.36 1.28
3998 4443 4.538490 TCGGGGGCTCCACAATTATTATAT 59.462 41.667 4.16 0.00 34.36 0.86
3999 4444 3.911260 TCGGGGGCTCCACAATTATTATA 59.089 43.478 4.16 0.00 34.36 0.98
4000 4445 2.714250 TCGGGGGCTCCACAATTATTAT 59.286 45.455 4.16 0.00 34.36 1.28
4001 4446 2.128535 TCGGGGGCTCCACAATTATTA 58.871 47.619 4.16 0.00 34.36 0.98
4002 4447 0.923358 TCGGGGGCTCCACAATTATT 59.077 50.000 4.16 0.00 34.36 1.40
4003 4448 1.149101 ATCGGGGGCTCCACAATTAT 58.851 50.000 4.16 0.00 34.36 1.28
4004 4449 0.923358 AATCGGGGGCTCCACAATTA 59.077 50.000 4.16 0.00 34.36 1.40
4005 4450 0.395724 GAATCGGGGGCTCCACAATT 60.396 55.000 4.16 0.00 34.36 2.32
4006 4451 1.227383 GAATCGGGGGCTCCACAAT 59.773 57.895 4.16 0.00 34.36 2.71
4007 4452 1.784301 TTGAATCGGGGGCTCCACAA 61.784 55.000 4.16 0.94 34.36 3.33
4008 4453 1.570857 ATTGAATCGGGGGCTCCACA 61.571 55.000 4.16 0.00 34.36 4.17
4009 4454 0.819666 GATTGAATCGGGGGCTCCAC 60.820 60.000 4.16 0.00 34.36 4.02
4010 4455 1.531748 GATTGAATCGGGGGCTCCA 59.468 57.895 4.16 0.00 34.36 3.86
4011 4456 4.483090 GATTGAATCGGGGGCTCC 57.517 61.111 0.00 0.00 0.00 4.70
4020 4465 7.065894 GTGCATGATTAGTGTACGATTGAATC 58.934 38.462 0.00 0.00 0.00 2.52
4021 4466 6.948353 GTGCATGATTAGTGTACGATTGAAT 58.052 36.000 0.00 0.00 0.00 2.57
4022 4467 6.344572 GTGCATGATTAGTGTACGATTGAA 57.655 37.500 0.00 0.00 0.00 2.69
4023 4468 5.966636 GTGCATGATTAGTGTACGATTGA 57.033 39.130 0.00 0.00 0.00 2.57
4029 4474 4.088648 GTTTGCGTGCATGATTAGTGTAC 58.911 43.478 10.93 0.00 0.00 2.90
4030 4475 3.181525 CGTTTGCGTGCATGATTAGTGTA 60.182 43.478 10.93 0.00 0.00 2.90
4031 4476 2.412716 CGTTTGCGTGCATGATTAGTGT 60.413 45.455 10.93 0.00 0.00 3.55
4032 4477 2.168384 CGTTTGCGTGCATGATTAGTG 58.832 47.619 10.93 0.00 0.00 2.74
4033 4478 2.525750 CGTTTGCGTGCATGATTAGT 57.474 45.000 10.93 0.00 0.00 2.24
4045 4490 1.717113 TCTTGATCGTACACGTTTGCG 59.283 47.619 5.81 5.81 44.93 4.85
4046 4491 3.366724 TGATCTTGATCGTACACGTTTGC 59.633 43.478 1.19 0.00 40.80 3.68
4047 4492 4.031765 CCTGATCTTGATCGTACACGTTTG 59.968 45.833 1.19 0.00 40.80 2.93
4048 4493 4.174009 CCTGATCTTGATCGTACACGTTT 58.826 43.478 1.19 0.00 40.80 3.60
4049 4494 3.428999 CCCTGATCTTGATCGTACACGTT 60.429 47.826 1.19 0.00 40.80 3.99
4050 4495 2.099263 CCCTGATCTTGATCGTACACGT 59.901 50.000 1.19 0.00 40.80 4.49
4051 4496 2.357952 TCCCTGATCTTGATCGTACACG 59.642 50.000 6.19 0.00 41.45 4.49
4052 4497 3.381908 AGTCCCTGATCTTGATCGTACAC 59.618 47.826 6.19 1.73 0.00 2.90
4053 4498 3.632333 AGTCCCTGATCTTGATCGTACA 58.368 45.455 6.19 0.00 0.00 2.90
4054 4499 3.632604 TGAGTCCCTGATCTTGATCGTAC 59.367 47.826 6.19 2.53 0.00 3.67
4055 4500 3.632604 GTGAGTCCCTGATCTTGATCGTA 59.367 47.826 6.19 0.00 0.00 3.43
4056 4501 2.428890 GTGAGTCCCTGATCTTGATCGT 59.571 50.000 6.19 0.00 0.00 3.73
4057 4502 2.542618 CGTGAGTCCCTGATCTTGATCG 60.543 54.545 6.19 2.03 0.00 3.69
4058 4503 2.223923 CCGTGAGTCCCTGATCTTGATC 60.224 54.545 3.82 3.82 0.00 2.92
4059 4504 1.759445 CCGTGAGTCCCTGATCTTGAT 59.241 52.381 0.00 0.00 0.00 2.57
4060 4505 1.186200 CCGTGAGTCCCTGATCTTGA 58.814 55.000 0.00 0.00 0.00 3.02
4061 4506 0.176680 CCCGTGAGTCCCTGATCTTG 59.823 60.000 0.00 0.00 0.00 3.02
4062 4507 0.041238 TCCCGTGAGTCCCTGATCTT 59.959 55.000 0.00 0.00 0.00 2.40
4063 4508 0.041238 TTCCCGTGAGTCCCTGATCT 59.959 55.000 0.00 0.00 0.00 2.75
4064 4509 0.461961 CTTCCCGTGAGTCCCTGATC 59.538 60.000 0.00 0.00 0.00 2.92
4065 4510 0.041238 TCTTCCCGTGAGTCCCTGAT 59.959 55.000 0.00 0.00 0.00 2.90
4066 4511 0.041238 ATCTTCCCGTGAGTCCCTGA 59.959 55.000 0.00 0.00 0.00 3.86
4067 4512 1.776662 TATCTTCCCGTGAGTCCCTG 58.223 55.000 0.00 0.00 0.00 4.45
4068 4513 2.091278 TGATATCTTCCCGTGAGTCCCT 60.091 50.000 3.98 0.00 0.00 4.20
4069 4514 2.036089 GTGATATCTTCCCGTGAGTCCC 59.964 54.545 3.98 0.00 0.00 4.46
4070 4515 2.693591 TGTGATATCTTCCCGTGAGTCC 59.306 50.000 3.98 0.00 0.00 3.85
4071 4516 4.113354 GTTGTGATATCTTCCCGTGAGTC 58.887 47.826 3.98 0.00 0.00 3.36
4072 4517 3.513912 TGTTGTGATATCTTCCCGTGAGT 59.486 43.478 3.98 0.00 0.00 3.41
4073 4518 3.865745 GTGTTGTGATATCTTCCCGTGAG 59.134 47.826 3.98 0.00 0.00 3.51
4074 4519 3.259625 TGTGTTGTGATATCTTCCCGTGA 59.740 43.478 3.98 0.00 0.00 4.35
4075 4520 3.595173 TGTGTTGTGATATCTTCCCGTG 58.405 45.455 3.98 0.00 0.00 4.94
4076 4521 3.973206 TGTGTTGTGATATCTTCCCGT 57.027 42.857 3.98 0.00 0.00 5.28
4077 4522 4.253685 AGTTGTGTTGTGATATCTTCCCG 58.746 43.478 3.98 0.00 0.00 5.14
4078 4523 5.491982 AGAGTTGTGTTGTGATATCTTCCC 58.508 41.667 3.98 0.00 0.00 3.97
4079 4524 7.097192 TGTAGAGTTGTGTTGTGATATCTTCC 58.903 38.462 3.98 0.00 0.00 3.46
4080 4525 8.534333 TTGTAGAGTTGTGTTGTGATATCTTC 57.466 34.615 3.98 0.00 0.00 2.87
4081 4526 8.902540 TTTGTAGAGTTGTGTTGTGATATCTT 57.097 30.769 3.98 0.00 0.00 2.40
4113 4558 8.562892 GCTTGTATTATGATGCTTGTATGACTT 58.437 33.333 0.00 0.00 0.00 3.01
4114 4559 7.173907 GGCTTGTATTATGATGCTTGTATGACT 59.826 37.037 0.00 0.00 0.00 3.41
4115 4560 7.041167 TGGCTTGTATTATGATGCTTGTATGAC 60.041 37.037 0.00 0.00 0.00 3.06
4116 4561 6.997476 TGGCTTGTATTATGATGCTTGTATGA 59.003 34.615 0.00 0.00 0.00 2.15
4117 4562 7.205737 TGGCTTGTATTATGATGCTTGTATG 57.794 36.000 0.00 0.00 0.00 2.39
4118 4563 6.432162 CCTGGCTTGTATTATGATGCTTGTAT 59.568 38.462 0.00 0.00 0.00 2.29
4119 4564 5.764686 CCTGGCTTGTATTATGATGCTTGTA 59.235 40.000 0.00 0.00 0.00 2.41
4120 4565 4.581824 CCTGGCTTGTATTATGATGCTTGT 59.418 41.667 0.00 0.00 0.00 3.16
4121 4566 4.022589 CCCTGGCTTGTATTATGATGCTTG 60.023 45.833 0.00 0.00 0.00 4.01
4122 4567 4.147321 CCCTGGCTTGTATTATGATGCTT 58.853 43.478 0.00 0.00 0.00 3.91
4123 4568 3.499202 CCCCTGGCTTGTATTATGATGCT 60.499 47.826 0.00 0.00 0.00 3.79
4124 4569 2.821969 CCCCTGGCTTGTATTATGATGC 59.178 50.000 0.00 0.00 0.00 3.91
4125 4570 2.821969 GCCCCTGGCTTGTATTATGATG 59.178 50.000 0.00 0.00 46.69 3.07
4126 4571 3.160679 GCCCCTGGCTTGTATTATGAT 57.839 47.619 0.00 0.00 46.69 2.45
4127 4572 2.656947 GCCCCTGGCTTGTATTATGA 57.343 50.000 0.00 0.00 46.69 2.15
4150 4595 1.134670 AGCACTTGTATTCGAGCCCTC 60.135 52.381 0.00 0.00 0.00 4.30
4151 4596 0.905357 AGCACTTGTATTCGAGCCCT 59.095 50.000 0.00 0.00 0.00 5.19
4152 4597 1.291132 GAGCACTTGTATTCGAGCCC 58.709 55.000 0.00 0.00 0.00 5.19
4153 4598 0.924090 CGAGCACTTGTATTCGAGCC 59.076 55.000 0.00 0.00 35.19 4.70
4154 4599 1.909376 TCGAGCACTTGTATTCGAGC 58.091 50.000 5.19 0.00 37.18 5.03
4155 4600 3.695816 TGATCGAGCACTTGTATTCGAG 58.304 45.455 0.00 0.00 44.14 4.04
4156 4601 3.775661 TGATCGAGCACTTGTATTCGA 57.224 42.857 0.00 9.86 44.88 3.71
4157 4602 5.340932 GTCTATGATCGAGCACTTGTATTCG 59.659 44.000 5.03 0.00 34.56 3.34
4158 4603 5.340932 CGTCTATGATCGAGCACTTGTATTC 59.659 44.000 5.03 0.00 0.00 1.75
4159 4604 5.008712 TCGTCTATGATCGAGCACTTGTATT 59.991 40.000 5.03 0.00 0.00 1.89
4160 4605 4.515567 TCGTCTATGATCGAGCACTTGTAT 59.484 41.667 5.03 0.00 0.00 2.29
4161 4606 3.875134 TCGTCTATGATCGAGCACTTGTA 59.125 43.478 5.03 0.00 0.00 2.41
4162 4607 2.683362 TCGTCTATGATCGAGCACTTGT 59.317 45.455 5.03 0.00 0.00 3.16
4163 4608 3.295785 CTCGTCTATGATCGAGCACTTG 58.704 50.000 5.03 0.00 44.82 3.16
4164 4609 3.617540 CTCGTCTATGATCGAGCACTT 57.382 47.619 5.03 0.00 44.82 3.16
4170 4615 1.527311 CGCTGACTCGTCTATGATCGA 59.473 52.381 0.00 0.00 34.88 3.59
4171 4616 1.399087 CCGCTGACTCGTCTATGATCG 60.399 57.143 0.00 0.00 0.00 3.69
4172 4617 1.874231 TCCGCTGACTCGTCTATGATC 59.126 52.381 0.00 0.00 0.00 2.92
4173 4618 1.968704 TCCGCTGACTCGTCTATGAT 58.031 50.000 0.00 0.00 0.00 2.45
4174 4619 1.671328 CTTCCGCTGACTCGTCTATGA 59.329 52.381 0.00 0.00 0.00 2.15
4175 4620 1.862008 GCTTCCGCTGACTCGTCTATG 60.862 57.143 0.00 0.00 0.00 2.23
4176 4621 0.382515 GCTTCCGCTGACTCGTCTAT 59.617 55.000 0.00 0.00 0.00 1.98
4177 4622 0.958876 TGCTTCCGCTGACTCGTCTA 60.959 55.000 0.00 0.00 36.97 2.59
4178 4623 1.806461 TTGCTTCCGCTGACTCGTCT 61.806 55.000 0.00 0.00 36.97 4.18
4179 4624 1.372997 TTGCTTCCGCTGACTCGTC 60.373 57.895 0.00 0.00 36.97 4.20
4180 4625 1.664965 GTTGCTTCCGCTGACTCGT 60.665 57.895 0.00 0.00 36.97 4.18
4181 4626 1.221466 TTGTTGCTTCCGCTGACTCG 61.221 55.000 0.00 0.00 36.97 4.18
4182 4627 1.160137 ATTGTTGCTTCCGCTGACTC 58.840 50.000 0.00 0.00 36.97 3.36
4183 4628 2.472695 TATTGTTGCTTCCGCTGACT 57.527 45.000 0.00 0.00 36.97 3.41
4184 4629 2.939103 AGATATTGTTGCTTCCGCTGAC 59.061 45.455 0.00 0.00 36.97 3.51
4185 4630 2.938451 CAGATATTGTTGCTTCCGCTGA 59.062 45.455 0.00 0.00 36.97 4.26
4186 4631 2.938451 TCAGATATTGTTGCTTCCGCTG 59.062 45.455 0.00 0.00 36.97 5.18
4187 4632 3.201290 CTCAGATATTGTTGCTTCCGCT 58.799 45.455 0.00 0.00 36.97 5.52
4188 4633 2.939103 ACTCAGATATTGTTGCTTCCGC 59.061 45.455 0.00 0.00 0.00 5.54
4189 4634 5.109210 TGTACTCAGATATTGTTGCTTCCG 58.891 41.667 0.00 0.00 0.00 4.30
4190 4635 6.341316 TCTGTACTCAGATATTGTTGCTTCC 58.659 40.000 0.00 0.00 44.58 3.46
4203 4648 9.692749 CTTGTTTAACTTATGTCTGTACTCAGA 57.307 33.333 0.00 0.00 46.85 3.27
4204 4649 9.477484 ACTTGTTTAACTTATGTCTGTACTCAG 57.523 33.333 0.00 0.00 42.54 3.35
4205 4650 9.826574 AACTTGTTTAACTTATGTCTGTACTCA 57.173 29.630 0.00 0.00 0.00 3.41
4207 4652 8.557029 GCAACTTGTTTAACTTATGTCTGTACT 58.443 33.333 0.00 0.00 0.00 2.73
4208 4653 7.801783 GGCAACTTGTTTAACTTATGTCTGTAC 59.198 37.037 0.00 0.00 0.00 2.90
4209 4654 7.499563 TGGCAACTTGTTTAACTTATGTCTGTA 59.500 33.333 0.00 0.00 37.61 2.74
4210 4655 6.320164 TGGCAACTTGTTTAACTTATGTCTGT 59.680 34.615 0.00 0.00 37.61 3.41
4211 4656 6.734137 TGGCAACTTGTTTAACTTATGTCTG 58.266 36.000 0.00 0.00 37.61 3.51
4212 4657 6.952773 TGGCAACTTGTTTAACTTATGTCT 57.047 33.333 0.00 0.00 37.61 3.41
4213 4658 9.341899 CTTATGGCAACTTGTTTAACTTATGTC 57.658 33.333 0.00 0.00 37.61 3.06
4214 4659 9.073475 TCTTATGGCAACTTGTTTAACTTATGT 57.927 29.630 0.00 0.00 37.61 2.29
4217 4662 8.519526 CCATCTTATGGCAACTTGTTTAACTTA 58.480 33.333 0.00 0.00 44.70 2.24
4218 4663 7.378181 CCATCTTATGGCAACTTGTTTAACTT 58.622 34.615 0.00 0.00 44.70 2.66
4219 4664 6.924111 CCATCTTATGGCAACTTGTTTAACT 58.076 36.000 0.00 0.00 44.70 2.24
4234 4679 5.163622 CCCAGTTTGTGTTAGCCATCTTATG 60.164 44.000 0.00 0.00 0.00 1.90
4235 4680 4.949856 CCCAGTTTGTGTTAGCCATCTTAT 59.050 41.667 0.00 0.00 0.00 1.73
4236 4681 4.042311 TCCCAGTTTGTGTTAGCCATCTTA 59.958 41.667 0.00 0.00 0.00 2.10
4237 4682 3.157087 CCCAGTTTGTGTTAGCCATCTT 58.843 45.455 0.00 0.00 0.00 2.40
4238 4683 2.375174 TCCCAGTTTGTGTTAGCCATCT 59.625 45.455 0.00 0.00 0.00 2.90
4239 4684 2.790433 TCCCAGTTTGTGTTAGCCATC 58.210 47.619 0.00 0.00 0.00 3.51
4240 4685 2.969821 TCCCAGTTTGTGTTAGCCAT 57.030 45.000 0.00 0.00 0.00 4.40
4241 4686 2.969821 ATCCCAGTTTGTGTTAGCCA 57.030 45.000 0.00 0.00 0.00 4.75
4242 4687 3.681593 TGTATCCCAGTTTGTGTTAGCC 58.318 45.455 0.00 0.00 0.00 3.93
4243 4688 4.575885 TCTGTATCCCAGTTTGTGTTAGC 58.424 43.478 0.00 0.00 42.19 3.09
4244 4689 5.520288 CGATCTGTATCCCAGTTTGTGTTAG 59.480 44.000 0.00 0.00 42.19 2.34
4245 4690 5.186215 TCGATCTGTATCCCAGTTTGTGTTA 59.814 40.000 0.00 0.00 42.19 2.41
4246 4691 4.020573 TCGATCTGTATCCCAGTTTGTGTT 60.021 41.667 0.00 0.00 42.19 3.32
4247 4692 3.513912 TCGATCTGTATCCCAGTTTGTGT 59.486 43.478 0.00 0.00 42.19 3.72
4248 4693 4.123497 TCGATCTGTATCCCAGTTTGTG 57.877 45.455 0.00 0.00 42.19 3.33
4249 4694 4.819105 TTCGATCTGTATCCCAGTTTGT 57.181 40.909 0.00 0.00 42.19 2.83
4250 4695 5.419542 TCTTTCGATCTGTATCCCAGTTTG 58.580 41.667 0.00 0.00 42.19 2.93
4251 4696 5.665459 CTCTTTCGATCTGTATCCCAGTTT 58.335 41.667 0.00 0.00 42.19 2.66
4252 4697 5.269505 CTCTTTCGATCTGTATCCCAGTT 57.730 43.478 0.00 0.00 42.19 3.16
4253 4698 4.927978 CTCTTTCGATCTGTATCCCAGT 57.072 45.455 0.00 0.00 42.19 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.