Multiple sequence alignment - TraesCS5A01G404300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G404300 chr5A 100.000 6210 0 0 1 6210 596372037 596365828 0.000000e+00 11468.0
1 TraesCS5A01G404300 chr5A 100.000 135 0 0 6076 6210 593236172 593236306 3.720000e-62 250.0
2 TraesCS5A01G404300 chr5D 90.310 4200 181 93 1307 5402 476832370 476828293 0.000000e+00 5293.0
3 TraesCS5A01G404300 chr5D 86.914 1215 70 48 75 1239 476833573 476832398 0.000000e+00 1280.0
4 TraesCS5A01G404300 chr5D 86.653 472 44 16 5388 5848 476828279 476827816 7.180000e-139 505.0
5 TraesCS5A01G404300 chr5D 93.519 216 6 5 2132 2340 334061073 334061287 1.300000e-81 315.0
6 TraesCS5A01G404300 chr5D 91.327 196 12 4 1749 1942 334059173 334059365 4.770000e-66 263.0
7 TraesCS5A01G404300 chr5D 86.154 195 23 3 3950 4141 425215636 425215829 2.270000e-49 207.0
8 TraesCS5A01G404300 chr5B 88.266 3034 171 94 148 3076 584616600 584613647 0.000000e+00 3459.0
9 TraesCS5A01G404300 chr5B 92.467 2363 81 34 3073 5373 584613526 584611199 0.000000e+00 3288.0
10 TraesCS5A01G404300 chr5B 85.910 511 40 13 5531 6029 584607111 584606621 3.320000e-142 516.0
11 TraesCS5A01G404300 chr5B 87.814 279 17 10 5109 5373 584607518 584607243 1.680000e-80 311.0
12 TraesCS5A01G404300 chr5B 87.097 279 21 9 5391 5666 584611142 584610876 1.010000e-77 302.0
13 TraesCS5A01G404300 chr5B 88.889 135 10 5 5712 5844 584610884 584610753 1.790000e-35 161.0
14 TraesCS5A01G404300 chr6A 90.402 323 25 4 1749 2069 396381782 396382100 2.680000e-113 420.0
15 TraesCS5A01G404300 chr6A 92.093 215 11 3 2132 2340 396382538 396382752 1.310000e-76 298.0
16 TraesCS5A01G404300 chr6A 100.000 136 0 0 6075 6210 94190519 94190654 1.030000e-62 252.0
17 TraesCS5A01G404300 chr4D 90.402 323 25 4 1749 2069 471652082 471651764 2.680000e-113 420.0
18 TraesCS5A01G404300 chr4D 91.204 216 11 5 2132 2340 471651326 471651112 2.830000e-73 287.0
19 TraesCS5A01G404300 chr7D 90.343 321 25 4 1751 2069 229747542 229747226 3.460000e-112 416.0
20 TraesCS5A01G404300 chr7D 93.519 216 6 5 2132 2340 229746789 229746575 1.300000e-81 315.0
21 TraesCS5A01G404300 chr7D 100.000 135 0 0 6076 6210 76724112 76724246 3.720000e-62 250.0
22 TraesCS5A01G404300 chr7D 87.805 82 9 1 5584 5664 114483302 114483383 1.840000e-15 95.3
23 TraesCS5A01G404300 chr7B 100.000 136 0 0 6075 6210 118000921 118000786 1.030000e-62 252.0
24 TraesCS5A01G404300 chr7B 100.000 135 0 0 6076 6210 706773824 706773958 3.720000e-62 250.0
25 TraesCS5A01G404300 chr7B 99.281 139 0 1 6072 6210 746351537 746351400 3.720000e-62 250.0
26 TraesCS5A01G404300 chr7B 87.692 195 20 3 3950 4141 532453921 532453728 2.250000e-54 224.0
27 TraesCS5A01G404300 chr7B 87.234 188 20 3 3957 4141 604280376 604280562 1.750000e-50 211.0
28 TraesCS5A01G404300 chr1A 100.000 136 0 0 6075 6210 495312581 495312446 1.030000e-62 252.0
29 TraesCS5A01G404300 chr2D 100.000 135 0 0 6076 6210 101902539 101902673 3.720000e-62 250.0
30 TraesCS5A01G404300 chr2D 87.568 185 19 3 3960 4141 638013309 638013492 1.750000e-50 211.0
31 TraesCS5A01G404300 chr2D 81.013 158 21 7 5515 5664 33915836 33915680 3.930000e-22 117.0
32 TraesCS5A01G404300 chr2A 100.000 135 0 0 6076 6210 751515972 751515838 3.720000e-62 250.0
33 TraesCS5A01G404300 chr3B 86.154 195 23 3 3950 4141 828473050 828473243 2.270000e-49 207.0
34 TraesCS5A01G404300 chr2B 86.702 188 21 3 3957 4141 753390787 753390973 8.160000e-49 206.0
35 TraesCS5A01G404300 chr7A 85.641 195 24 3 3950 4141 474141683 474141490 1.060000e-47 202.0
36 TraesCS5A01G404300 chr3D 81.868 182 23 6 5490 5664 590500420 590500598 1.800000e-30 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G404300 chr5A 596365828 596372037 6209 True 11468.000000 11468 100.000000 1 6210 1 chr5A.!!$R1 6209
1 TraesCS5A01G404300 chr5D 476827816 476833573 5757 True 2359.333333 5293 87.959000 75 5848 3 chr5D.!!$R1 5773
2 TraesCS5A01G404300 chr5D 334059173 334061287 2114 False 289.000000 315 92.423000 1749 2340 2 chr5D.!!$F2 591
3 TraesCS5A01G404300 chr5B 584606621 584616600 9979 True 1339.500000 3459 88.407167 148 6029 6 chr5B.!!$R1 5881
4 TraesCS5A01G404300 chr6A 396381782 396382752 970 False 359.000000 420 91.247500 1749 2340 2 chr6A.!!$F2 591
5 TraesCS5A01G404300 chr4D 471651112 471652082 970 True 353.500000 420 90.803000 1749 2340 2 chr4D.!!$R1 591
6 TraesCS5A01G404300 chr7D 229746575 229747542 967 True 365.500000 416 91.931000 1751 2340 2 chr7D.!!$R1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.178967 TGCCTGCTTTCCACCATTGA 60.179 50.0 0.0 0.0 0.0 2.57 F
401 441 0.179100 AGTCATCGCCCGTCATCAAG 60.179 55.0 0.0 0.0 0.0 3.02 F
1055 1131 0.101939 GCCTGCCTAATTGCTTGCTC 59.898 55.0 0.0 0.0 0.0 4.26 F
1309 1407 0.185175 GTCTCTCCTCCTCCTCCTCC 59.815 65.0 0.0 0.0 0.0 4.30 F
2447 4245 0.110486 ATTCACCCAAGAACTGCGGT 59.890 50.0 0.0 0.0 0.0 5.68 F
4054 5995 0.179004 TTTCATTCACCACAGGCCGT 60.179 50.0 0.0 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1055 1131 0.324943 TTTTGGAGAGGGAAGAGGCG 59.675 55.000 0.0 0.0 0.00 5.52 R
2217 4007 0.239347 CGACCAGCAAGAAAAGCCTG 59.761 55.000 0.0 0.0 0.00 4.85 R
2429 4227 0.106918 AACCGCAGTTCTTGGGTGAA 60.107 50.000 0.0 0.0 38.02 3.18 R
2799 4608 0.459585 GTCTATCCAAGCACGCCGAA 60.460 55.000 0.0 0.0 0.00 4.30 R
4207 6148 1.134788 GCCCGTAATCAGTACAGTGCT 60.135 52.381 0.0 0.0 32.45 4.40 R
6029 11973 0.035439 CCACGCTTCCTACCAACCAT 60.035 55.000 0.0 0.0 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.736447 AAGCTACTTCATTACCAATAGATGC 57.264 36.000 0.00 0.00 0.00 3.91
26 27 6.234177 AGCTACTTCATTACCAATAGATGCC 58.766 40.000 0.00 0.00 0.00 4.40
27 28 6.043706 AGCTACTTCATTACCAATAGATGCCT 59.956 38.462 0.00 0.00 0.00 4.75
28 29 6.148480 GCTACTTCATTACCAATAGATGCCTG 59.852 42.308 0.00 0.00 0.00 4.85
29 30 4.823989 ACTTCATTACCAATAGATGCCTGC 59.176 41.667 0.00 0.00 0.00 4.85
30 31 4.712051 TCATTACCAATAGATGCCTGCT 57.288 40.909 0.00 0.00 0.00 4.24
31 32 5.052693 TCATTACCAATAGATGCCTGCTT 57.947 39.130 0.00 0.00 0.00 3.91
32 33 5.448654 TCATTACCAATAGATGCCTGCTTT 58.551 37.500 0.00 0.00 0.00 3.51
33 34 5.532406 TCATTACCAATAGATGCCTGCTTTC 59.468 40.000 0.00 0.00 0.00 2.62
34 35 2.659428 ACCAATAGATGCCTGCTTTCC 58.341 47.619 0.00 0.00 0.00 3.13
35 36 2.025037 ACCAATAGATGCCTGCTTTCCA 60.025 45.455 0.00 0.00 0.00 3.53
36 37 2.360165 CCAATAGATGCCTGCTTTCCAC 59.640 50.000 0.00 0.00 0.00 4.02
37 38 2.355010 ATAGATGCCTGCTTTCCACC 57.645 50.000 0.00 0.00 0.00 4.61
38 39 0.991146 TAGATGCCTGCTTTCCACCA 59.009 50.000 0.00 0.00 0.00 4.17
39 40 0.333993 AGATGCCTGCTTTCCACCAT 59.666 50.000 0.00 0.00 0.00 3.55
40 41 1.188863 GATGCCTGCTTTCCACCATT 58.811 50.000 0.00 0.00 0.00 3.16
41 42 0.899720 ATGCCTGCTTTCCACCATTG 59.100 50.000 0.00 0.00 0.00 2.82
42 43 0.178967 TGCCTGCTTTCCACCATTGA 60.179 50.000 0.00 0.00 0.00 2.57
43 44 0.244721 GCCTGCTTTCCACCATTGAC 59.755 55.000 0.00 0.00 0.00 3.18
44 45 1.619654 CCTGCTTTCCACCATTGACA 58.380 50.000 0.00 0.00 0.00 3.58
45 46 2.173519 CCTGCTTTCCACCATTGACAT 58.826 47.619 0.00 0.00 0.00 3.06
46 47 2.094390 CCTGCTTTCCACCATTGACATG 60.094 50.000 0.00 0.00 0.00 3.21
58 59 3.313526 CCATTGACATGGTAGTAGCAAGC 59.686 47.826 6.07 0.00 44.81 4.01
59 60 3.981071 TTGACATGGTAGTAGCAAGCT 57.019 42.857 6.07 0.00 0.00 3.74
60 61 3.251479 TGACATGGTAGTAGCAAGCTG 57.749 47.619 6.07 3.12 0.00 4.24
61 62 1.936547 GACATGGTAGTAGCAAGCTGC 59.063 52.381 6.07 3.05 45.46 5.25
72 73 0.788391 GCAAGCTGCAAAACTCATGC 59.212 50.000 1.02 0.00 44.26 4.06
73 74 1.425412 CAAGCTGCAAAACTCATGCC 58.575 50.000 1.02 0.00 43.16 4.40
81 82 4.939271 TGCAAAACTCATGCCATCATATG 58.061 39.130 0.00 0.00 43.16 1.78
90 91 1.887854 TGCCATCATATGATTTGCCGG 59.112 47.619 24.16 18.84 31.98 6.13
120 122 4.488790 CAGTCAAACTGCAGGCCT 57.511 55.556 19.93 0.00 39.62 5.19
121 123 2.251600 CAGTCAAACTGCAGGCCTC 58.748 57.895 19.93 0.00 39.62 4.70
122 124 0.535780 CAGTCAAACTGCAGGCCTCA 60.536 55.000 19.93 3.14 39.62 3.86
123 125 0.403271 AGTCAAACTGCAGGCCTCAT 59.597 50.000 19.93 0.00 0.00 2.90
124 126 1.630369 AGTCAAACTGCAGGCCTCATA 59.370 47.619 19.93 0.00 0.00 2.15
125 127 2.240667 AGTCAAACTGCAGGCCTCATAT 59.759 45.455 19.93 0.00 0.00 1.78
126 128 3.019564 GTCAAACTGCAGGCCTCATATT 58.980 45.455 19.93 0.00 0.00 1.28
127 129 3.065925 GTCAAACTGCAGGCCTCATATTC 59.934 47.826 19.93 0.00 0.00 1.75
128 130 3.054139 TCAAACTGCAGGCCTCATATTCT 60.054 43.478 19.93 0.00 0.00 2.40
129 131 2.926778 ACTGCAGGCCTCATATTCTC 57.073 50.000 19.93 0.00 0.00 2.87
130 132 1.069823 ACTGCAGGCCTCATATTCTCG 59.930 52.381 19.93 0.00 0.00 4.04
131 133 1.069823 CTGCAGGCCTCATATTCTCGT 59.930 52.381 0.00 0.00 0.00 4.18
132 134 2.297315 CTGCAGGCCTCATATTCTCGTA 59.703 50.000 0.00 0.00 0.00 3.43
146 148 1.486310 TCTCGTATCATTTGCTGCCCT 59.514 47.619 0.00 0.00 0.00 5.19
158 160 1.561076 TGCTGCCCTATCACTGTCATT 59.439 47.619 0.00 0.00 0.00 2.57
207 209 2.282555 CCATCAGTCGTACGCAGATTTG 59.717 50.000 11.24 3.87 0.00 2.32
208 210 3.179048 CATCAGTCGTACGCAGATTTGA 58.821 45.455 11.24 7.85 0.00 2.69
209 211 3.503827 TCAGTCGTACGCAGATTTGAT 57.496 42.857 11.24 0.00 0.00 2.57
210 212 3.435566 TCAGTCGTACGCAGATTTGATC 58.564 45.455 11.24 0.00 0.00 2.92
211 213 3.119637 TCAGTCGTACGCAGATTTGATCA 60.120 43.478 11.24 0.00 0.00 2.92
212 214 3.798878 CAGTCGTACGCAGATTTGATCAT 59.201 43.478 11.24 0.00 0.00 2.45
220 222 5.877031 ACGCAGATTTGATCATTTGAAGAG 58.123 37.500 0.00 0.00 0.00 2.85
222 224 5.647589 GCAGATTTGATCATTTGAAGAGCA 58.352 37.500 0.00 0.00 0.00 4.26
234 255 1.162698 GAAGAGCAATGTCAGCAGCA 58.837 50.000 0.00 0.00 0.00 4.41
294 333 3.580319 ACCACCACCCTCCAAGCC 61.580 66.667 0.00 0.00 0.00 4.35
296 335 3.260100 CACCACCCTCCAAGCCCT 61.260 66.667 0.00 0.00 0.00 5.19
298 337 1.616628 ACCACCCTCCAAGCCCTAG 60.617 63.158 0.00 0.00 0.00 3.02
381 421 3.943479 TTTCGGCGTCCCCATCACG 62.943 63.158 6.85 0.00 40.35 4.35
401 441 0.179100 AGTCATCGCCCGTCATCAAG 60.179 55.000 0.00 0.00 0.00 3.02
472 512 4.079253 AGCAACGATTAATCAAACCTGGT 58.921 39.130 15.57 0.00 0.00 4.00
475 515 5.153513 CAACGATTAATCAAACCTGGTGTG 58.846 41.667 10.94 10.94 0.00 3.82
546 596 1.123077 AGCCAGCGATTATCACTGGA 58.877 50.000 27.60 0.00 46.82 3.86
549 599 3.056250 AGCCAGCGATTATCACTGGATAG 60.056 47.826 27.60 6.64 46.82 2.08
590 640 1.422388 CCACATGTGTCGTGTCTCAG 58.578 55.000 23.79 1.21 30.47 3.35
628 678 2.237751 CGGATCACGGTTGCGGATC 61.238 63.158 0.00 0.00 39.42 3.36
657 707 4.620982 GCAGAAAGCCTAACACACAAATT 58.379 39.130 0.00 0.00 37.23 1.82
682 732 1.450134 CGAGCTGGCATGGTTAGCA 60.450 57.895 0.00 0.00 39.84 3.49
683 733 1.434622 CGAGCTGGCATGGTTAGCAG 61.435 60.000 0.00 0.00 39.84 4.24
684 734 1.722636 GAGCTGGCATGGTTAGCAGC 61.723 60.000 0.00 0.00 39.84 5.25
719 769 0.249868 GCCTTTCCCCAGTTTTGCAC 60.250 55.000 0.00 0.00 0.00 4.57
741 791 3.028366 GCAAGAACGAAGAGGCCGC 62.028 63.158 0.00 0.00 0.00 6.53
748 798 2.840066 CGAAGAGGCCGCGAGAGAT 61.840 63.158 8.23 0.00 0.00 2.75
749 799 1.299773 GAAGAGGCCGCGAGAGATG 60.300 63.158 8.23 0.00 0.00 2.90
751 801 4.292178 GAGGCCGCGAGAGATGGG 62.292 72.222 8.23 0.00 0.00 4.00
752 802 4.841617 AGGCCGCGAGAGATGGGA 62.842 66.667 8.23 0.00 0.00 4.37
753 803 3.620785 GGCCGCGAGAGATGGGAT 61.621 66.667 8.23 0.00 0.00 3.85
754 804 2.276116 GGCCGCGAGAGATGGGATA 61.276 63.158 8.23 0.00 0.00 2.59
755 805 1.080434 GCCGCGAGAGATGGGATAC 60.080 63.158 8.23 0.00 0.00 2.24
759 809 2.007608 CGCGAGAGATGGGATACGATA 58.992 52.381 0.00 0.00 33.87 2.92
816 876 2.047844 CTGTGGACGGTGAGCTGG 60.048 66.667 0.00 0.00 0.00 4.85
818 878 4.394712 GTGGACGGTGAGCTGGGG 62.395 72.222 0.00 0.00 0.00 4.96
1047 1123 4.362479 GGCCTTGCCTGCCTAATT 57.638 55.556 0.00 0.00 46.69 1.40
1055 1131 0.101939 GCCTGCCTAATTGCTTGCTC 59.898 55.000 0.00 0.00 0.00 4.26
1140 1236 0.252197 GGTGGTGGTCTGGTGGATAC 59.748 60.000 0.00 0.00 0.00 2.24
1187 1283 2.545596 CGCAAGAAGCCACACTGCA 61.546 57.895 0.00 0.00 41.38 4.41
1188 1284 1.008079 GCAAGAAGCCACACTGCAC 60.008 57.895 0.00 0.00 37.23 4.57
1189 1285 1.450531 GCAAGAAGCCACACTGCACT 61.451 55.000 0.00 0.00 37.23 4.40
1228 1326 1.809567 GCTGCTGGGTTGGTTCCTTG 61.810 60.000 0.00 0.00 0.00 3.61
1309 1407 0.185175 GTCTCTCCTCCTCCTCCTCC 59.815 65.000 0.00 0.00 0.00 4.30
1312 1410 0.996762 TCTCCTCCTCCTCCTCCTCC 60.997 65.000 0.00 0.00 0.00 4.30
1313 1411 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1314 1412 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1315 1413 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1316 1414 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1317 1415 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1318 1416 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1319 1417 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
1320 1418 0.996762 TCCTCCTCCTCCTCCTCCTC 60.997 65.000 0.00 0.00 0.00 3.71
1321 1419 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
1354 1452 1.380112 GTCTCCCGTGCCCTAGAGT 60.380 63.158 0.00 0.00 0.00 3.24
1355 1453 0.971447 GTCTCCCGTGCCCTAGAGTT 60.971 60.000 0.00 0.00 0.00 3.01
1356 1454 0.252103 TCTCCCGTGCCCTAGAGTTT 60.252 55.000 0.00 0.00 0.00 2.66
1363 1461 0.702316 TGCCCTAGAGTTTTTCCCCC 59.298 55.000 0.00 0.00 0.00 5.40
1405 1503 1.893808 CTGCTCACGCTGGTTTGGT 60.894 57.895 0.00 0.00 36.97 3.67
1532 1641 0.395173 ACAGGCGTTCCAACAGGTTT 60.395 50.000 0.00 0.00 33.74 3.27
1554 1675 2.796593 GTTTGCGCTGAAAGATTTGCTT 59.203 40.909 9.73 0.00 38.88 3.91
1686 1807 6.738114 TCTATGCTTCAGACAAAACTTTTGG 58.262 36.000 16.79 1.90 0.00 3.28
1689 1810 3.678529 GCTTCAGACAAAACTTTTGGCCA 60.679 43.478 15.33 0.00 0.00 5.36
1721 1842 2.224090 GCGGTAAGATTTCTCCTCCTCC 60.224 54.545 0.00 0.00 0.00 4.30
1724 1845 4.034410 GGTAAGATTTCTCCTCCTCCTGT 58.966 47.826 0.00 0.00 0.00 4.00
1737 1858 1.311859 CTCCTGTGCAGCTTCAACAA 58.688 50.000 0.00 0.00 0.00 2.83
1741 1862 2.553602 CCTGTGCAGCTTCAACAATGTA 59.446 45.455 0.00 0.00 0.00 2.29
1778 1922 2.582052 TGATTTTGAGCGACCCTGTTT 58.418 42.857 0.00 0.00 0.00 2.83
1799 1949 5.477607 TTCGATTCTGTTTACCAGGAAGA 57.522 39.130 0.00 0.00 41.83 2.87
1891 2044 7.310734 CCCTGAGAAAAGAGGTACTAAATCACT 60.311 40.741 0.00 0.00 41.55 3.41
1894 2047 9.085645 TGAGAAAAGAGGTACTAAATCACTGTA 57.914 33.333 0.00 0.00 41.55 2.74
1946 2099 1.347707 TGACATCTCGCCTTTGAGGTT 59.652 47.619 0.00 0.00 37.80 3.50
2090 3875 7.982919 CCTTGATGATTTTGCCAGAATATGAAA 59.017 33.333 0.00 0.00 0.00 2.69
2091 3876 9.542462 CTTGATGATTTTGCCAGAATATGAAAT 57.458 29.630 0.00 0.00 0.00 2.17
2092 3877 8.880878 TGATGATTTTGCCAGAATATGAAATG 57.119 30.769 0.00 0.00 0.00 2.32
2093 3878 7.929245 TGATGATTTTGCCAGAATATGAAATGG 59.071 33.333 0.00 0.00 35.84 3.16
2101 3886 6.808008 CCAGAATATGAAATGGCGTAGAAT 57.192 37.500 0.00 0.00 0.00 2.40
2102 3887 7.206981 CCAGAATATGAAATGGCGTAGAATT 57.793 36.000 0.00 0.00 0.00 2.17
2103 3888 7.651808 CCAGAATATGAAATGGCGTAGAATTT 58.348 34.615 0.00 0.00 0.00 1.82
2104 3889 8.137437 CCAGAATATGAAATGGCGTAGAATTTT 58.863 33.333 0.00 0.00 0.00 1.82
2105 3890 9.520204 CAGAATATGAAATGGCGTAGAATTTTT 57.480 29.630 0.00 0.00 0.00 1.94
2126 3911 6.436843 TTTTGTTGAGAGAAGTTCCTGAAC 57.563 37.500 13.08 13.08 41.45 3.18
2127 3912 4.753516 TGTTGAGAGAAGTTCCTGAACA 57.246 40.909 16.48 16.48 43.47 3.18
2128 3913 5.296151 TGTTGAGAGAAGTTCCTGAACAT 57.704 39.130 16.48 0.02 43.47 2.71
2129 3914 6.419484 TGTTGAGAGAAGTTCCTGAACATA 57.581 37.500 16.48 2.85 43.47 2.29
2130 3915 6.223852 TGTTGAGAGAAGTTCCTGAACATAC 58.776 40.000 16.48 3.61 43.47 2.39
2169 3954 8.587111 GTTGACAAATGTTTCTTCTTCTGTTTC 58.413 33.333 0.00 0.00 0.00 2.78
2170 3955 8.055279 TGACAAATGTTTCTTCTTCTGTTTCT 57.945 30.769 0.00 0.00 0.00 2.52
2172 3957 8.693542 ACAAATGTTTCTTCTTCTGTTTCTTG 57.306 30.769 0.00 0.00 0.00 3.02
2174 3959 5.248870 TGTTTCTTCTTCTGTTTCTTGGC 57.751 39.130 0.00 0.00 0.00 4.52
2175 3960 4.949856 TGTTTCTTCTTCTGTTTCTTGGCT 59.050 37.500 0.00 0.00 0.00 4.75
2176 3961 5.163622 TGTTTCTTCTTCTGTTTCTTGGCTG 60.164 40.000 0.00 0.00 0.00 4.85
2177 3962 4.422073 TCTTCTTCTGTTTCTTGGCTGA 57.578 40.909 0.00 0.00 0.00 4.26
2178 3963 4.978099 TCTTCTTCTGTTTCTTGGCTGAT 58.022 39.130 0.00 0.00 0.00 2.90
2179 3964 5.380043 TCTTCTTCTGTTTCTTGGCTGATT 58.620 37.500 0.00 0.00 0.00 2.57
2217 4007 9.303116 TCTCTACTAATTATCCAATCTCTCACC 57.697 37.037 0.00 0.00 0.00 4.02
2225 4019 2.376518 TCCAATCTCTCACCAGGCTTTT 59.623 45.455 0.00 0.00 0.00 2.27
2422 4220 1.378762 GCCAGTGCCAAAGGTAGGA 59.621 57.895 0.00 0.00 0.00 2.94
2424 4222 0.400213 CCAGTGCCAAAGGTAGGACA 59.600 55.000 0.00 0.00 0.00 4.02
2425 4223 1.523758 CAGTGCCAAAGGTAGGACAC 58.476 55.000 0.00 0.00 35.09 3.67
2434 4232 3.875865 GGTAGGACACCCATTCACC 57.124 57.895 0.00 0.00 42.07 4.02
2435 4233 0.255033 GGTAGGACACCCATTCACCC 59.745 60.000 0.00 0.00 42.07 4.61
2436 4234 0.988832 GTAGGACACCCATTCACCCA 59.011 55.000 0.00 0.00 33.88 4.51
2437 4235 1.353022 GTAGGACACCCATTCACCCAA 59.647 52.381 0.00 0.00 33.88 4.12
2438 4236 0.405585 AGGACACCCATTCACCCAAG 59.594 55.000 0.00 0.00 33.88 3.61
2439 4237 0.404040 GGACACCCATTCACCCAAGA 59.596 55.000 0.00 0.00 0.00 3.02
2440 4238 1.203001 GGACACCCATTCACCCAAGAA 60.203 52.381 0.00 0.00 0.00 2.52
2441 4239 1.886542 GACACCCATTCACCCAAGAAC 59.113 52.381 0.00 0.00 0.00 3.01
2442 4240 1.499007 ACACCCATTCACCCAAGAACT 59.501 47.619 0.00 0.00 0.00 3.01
2443 4241 1.888512 CACCCATTCACCCAAGAACTG 59.111 52.381 0.00 0.00 0.00 3.16
2444 4242 0.890683 CCCATTCACCCAAGAACTGC 59.109 55.000 0.00 0.00 0.00 4.40
2445 4243 0.523072 CCATTCACCCAAGAACTGCG 59.477 55.000 0.00 0.00 0.00 5.18
2447 4245 0.110486 ATTCACCCAAGAACTGCGGT 59.890 50.000 0.00 0.00 0.00 5.68
2449 4247 0.759959 TCACCCAAGAACTGCGGTTA 59.240 50.000 11.80 0.00 35.58 2.85
2450 4248 1.141254 TCACCCAAGAACTGCGGTTAA 59.859 47.619 11.80 0.00 35.58 2.01
2453 4251 3.005367 CACCCAAGAACTGCGGTTAATTT 59.995 43.478 11.80 3.74 35.58 1.82
2454 4252 3.254903 ACCCAAGAACTGCGGTTAATTTC 59.745 43.478 11.80 0.00 35.58 2.17
2455 4253 3.506067 CCCAAGAACTGCGGTTAATTTCT 59.494 43.478 11.80 0.24 35.58 2.52
2456 4254 4.379499 CCCAAGAACTGCGGTTAATTTCTC 60.379 45.833 11.80 0.00 35.58 2.87
2459 4257 5.153950 AGAACTGCGGTTAATTTCTCTCT 57.846 39.130 11.80 0.00 35.58 3.10
2460 4258 5.552178 AGAACTGCGGTTAATTTCTCTCTT 58.448 37.500 11.80 0.00 35.58 2.85
2462 4260 6.486993 AGAACTGCGGTTAATTTCTCTCTTTT 59.513 34.615 11.80 0.00 35.58 2.27
2463 4261 6.002062 ACTGCGGTTAATTTCTCTCTTTTG 57.998 37.500 0.00 0.00 0.00 2.44
2655 4461 2.651361 CTGAAGCCGTCGGTGAGT 59.349 61.111 13.94 0.00 0.00 3.41
2799 4608 1.478510 CCGTTGATGGACTGCTCTACT 59.521 52.381 0.00 0.00 0.00 2.57
2819 4628 1.141881 CGGCGTGCTTGGATAGACT 59.858 57.895 0.00 0.00 0.00 3.24
2880 4689 2.100631 CCGTGGCATCTGTTCGTCC 61.101 63.158 0.00 0.00 0.00 4.79
2919 4728 2.860971 AGTCTTGCCAGGGCCCTT 60.861 61.111 26.10 4.32 41.09 3.95
3026 4835 9.624697 ATGTTATGCTGTTACACAATGTAAAAG 57.375 29.630 12.66 12.66 46.16 2.27
3027 4836 8.625651 TGTTATGCTGTTACACAATGTAAAAGT 58.374 29.630 16.57 4.72 45.52 2.66
3042 4851 8.905702 CAATGTAAAAGTAACTTGCTAAAGCTG 58.094 33.333 3.26 0.00 42.66 4.24
3051 4860 9.892130 AGTAACTTGCTAAAGCTGTTAGAATAT 57.108 29.630 15.53 2.84 39.34 1.28
3122 5055 6.519679 TTCAATGATTGAAATGTAGCTGCT 57.480 33.333 17.50 7.57 45.94 4.24
3144 5077 5.537188 CTCTGTGGAGCTGTATAAGATTCC 58.463 45.833 0.00 0.00 33.78 3.01
3218 5152 1.210478 GGGGTGATCAGCTTAGCAGAA 59.790 52.381 23.24 0.00 0.00 3.02
3251 5185 0.839946 ATGTAGCTGACCACATCCCC 59.160 55.000 0.00 0.00 29.34 4.81
3254 5188 1.043116 TAGCTGACCACATCCCCGAG 61.043 60.000 0.00 0.00 0.00 4.63
3359 5293 1.306642 GCTCCTCGTCTTCTCCGACA 61.307 60.000 0.00 0.00 33.54 4.35
3497 5431 1.545651 GGGTTGAAGGAGTTCAGTGGG 60.546 57.143 0.00 0.00 43.66 4.61
3527 5461 2.165030 CACAATGGTTGAGATTCCAGCC 59.835 50.000 0.00 0.00 37.14 4.85
3542 5476 0.311790 CAGCCATTTGCCGCGATAAT 59.688 50.000 8.23 0.50 42.71 1.28
3593 5527 5.717178 TCTCCAGACTTACAAGTGAGCTAAT 59.283 40.000 0.00 0.00 39.88 1.73
3610 5544 6.071672 TGAGCTAATCTCATCCTTATTCTCCG 60.072 42.308 0.00 0.00 46.34 4.63
3621 5555 4.408921 TCCTTATTCTCCGGTGAATGTGAT 59.591 41.667 32.11 15.77 37.27 3.06
3634 5568 6.037500 CGGTGAATGTGATTGTGAATGTATCT 59.962 38.462 0.00 0.00 0.00 1.98
3669 5603 4.346734 TGTTACTGATTCGGTCGTCTAC 57.653 45.455 0.25 0.00 0.00 2.59
3673 5607 3.770666 ACTGATTCGGTCGTCTACATTG 58.229 45.455 0.00 0.00 0.00 2.82
3876 5813 2.985139 GGGTCTCGTTGAACTACTTTCG 59.015 50.000 0.00 0.00 36.97 3.46
4054 5995 0.179004 TTTCATTCACCACAGGCCGT 60.179 50.000 0.00 0.00 0.00 5.68
4121 6062 1.955778 CTGGTTCTTGGATGCAACACA 59.044 47.619 0.00 0.00 0.00 3.72
4191 6132 3.362534 CCGTTAAAGGCGTAAATGTTTGC 59.637 43.478 0.00 0.00 0.00 3.68
4195 6136 2.704725 AGGCGTAAATGTTTGCACTG 57.295 45.000 0.00 0.00 0.00 3.66
4196 6137 1.953686 AGGCGTAAATGTTTGCACTGT 59.046 42.857 0.00 0.00 0.00 3.55
4197 6138 3.142951 AGGCGTAAATGTTTGCACTGTA 58.857 40.909 0.00 0.00 0.00 2.74
4198 6139 3.058501 AGGCGTAAATGTTTGCACTGTAC 60.059 43.478 0.00 0.00 0.00 2.90
4199 6140 3.058501 GGCGTAAATGTTTGCACTGTACT 60.059 43.478 0.00 0.00 0.00 2.73
4200 6141 3.906008 GCGTAAATGTTTGCACTGTACTG 59.094 43.478 0.00 0.00 0.00 2.74
4201 6142 4.319190 GCGTAAATGTTTGCACTGTACTGA 60.319 41.667 6.77 0.00 0.00 3.41
4202 6143 5.616866 GCGTAAATGTTTGCACTGTACTGAT 60.617 40.000 6.77 0.00 0.00 2.90
4203 6144 6.370593 CGTAAATGTTTGCACTGTACTGATT 58.629 36.000 6.77 0.00 0.00 2.57
4204 6145 7.514805 CGTAAATGTTTGCACTGTACTGATTA 58.485 34.615 6.77 0.00 0.00 1.75
4205 6146 8.175069 CGTAAATGTTTGCACTGTACTGATTAT 58.825 33.333 6.77 0.00 0.00 1.28
4206 6147 9.277565 GTAAATGTTTGCACTGTACTGATTATG 57.722 33.333 6.77 0.00 0.00 1.90
4207 6148 7.686438 AATGTTTGCACTGTACTGATTATGA 57.314 32.000 6.77 0.00 0.00 2.15
4208 6149 6.726258 TGTTTGCACTGTACTGATTATGAG 57.274 37.500 6.77 0.00 0.00 2.90
4478 6420 1.985684 GCTTGTAACGAAGCAAATGCC 59.014 47.619 0.94 0.00 46.46 4.40
4492 6435 1.560505 AATGCCGCCTTTTCTCCAAT 58.439 45.000 0.00 0.00 0.00 3.16
4552 6499 6.825610 TGCAAAGATTTGGTATGAAAAAGGT 58.174 32.000 7.38 0.00 38.57 3.50
4588 6535 6.270695 TGAGGAAATGATATGATAGCCTGACA 59.729 38.462 1.34 0.00 0.00 3.58
4589 6536 6.471146 AGGAAATGATATGATAGCCTGACAC 58.529 40.000 0.00 0.00 0.00 3.67
4591 6538 6.712095 GGAAATGATATGATAGCCTGACACAA 59.288 38.462 0.00 0.00 0.00 3.33
4705 6656 2.213499 ACTGCGAGCATAATTACCAGC 58.787 47.619 0.00 0.00 0.00 4.85
4718 6675 1.169661 TACCAGCGGTGCCAAACAAG 61.170 55.000 9.63 0.00 36.19 3.16
4942 6910 2.123077 CCCGGAGAGCCTGAGGAT 60.123 66.667 0.73 0.00 0.00 3.24
5024 7001 2.538512 ACAACCTCAACTTCCGGTAC 57.461 50.000 0.00 0.00 0.00 3.34
5065 7042 0.687354 TTTCCTCACCTGAGCTGACC 59.313 55.000 0.00 0.00 40.75 4.02
5066 7043 0.178921 TTCCTCACCTGAGCTGACCT 60.179 55.000 0.00 0.00 40.75 3.85
5067 7044 0.178921 TCCTCACCTGAGCTGACCTT 60.179 55.000 0.00 0.00 40.75 3.50
5068 7045 0.036577 CCTCACCTGAGCTGACCTTG 60.037 60.000 0.00 0.00 40.75 3.61
5069 7046 0.683973 CTCACCTGAGCTGACCTTGT 59.316 55.000 0.00 0.00 35.13 3.16
5070 7047 0.394192 TCACCTGAGCTGACCTTGTG 59.606 55.000 0.00 0.00 0.00 3.33
5071 7048 1.072159 ACCTGAGCTGACCTTGTGC 59.928 57.895 0.00 0.00 0.00 4.57
5072 7049 1.374190 CCTGAGCTGACCTTGTGCT 59.626 57.895 0.00 0.00 40.02 4.40
5073 7050 0.954449 CCTGAGCTGACCTTGTGCTG 60.954 60.000 0.00 0.00 37.16 4.41
5074 7051 1.575576 CTGAGCTGACCTTGTGCTGC 61.576 60.000 0.00 0.00 37.16 5.25
5075 7052 1.302351 GAGCTGACCTTGTGCTGCT 60.302 57.895 0.00 0.00 41.16 4.24
5076 7053 1.575576 GAGCTGACCTTGTGCTGCTG 61.576 60.000 0.00 0.00 39.04 4.41
5077 7054 1.598962 GCTGACCTTGTGCTGCTGA 60.599 57.895 0.00 0.00 0.00 4.26
5078 7055 1.849976 GCTGACCTTGTGCTGCTGAC 61.850 60.000 0.00 0.00 0.00 3.51
5135 7118 6.494666 TGATAGGTTTATTAGGTCCAGTGG 57.505 41.667 1.40 1.40 0.00 4.00
5136 7119 3.646736 AGGTTTATTAGGTCCAGTGGC 57.353 47.619 3.51 0.00 0.00 5.01
5141 7127 0.824759 ATTAGGTCCAGTGGCGAGTC 59.175 55.000 3.51 0.00 0.00 3.36
5145 7131 4.357947 TCCAGTGGCGAGTCGTGC 62.358 66.667 15.08 4.79 0.00 5.34
5221 7207 8.579682 AGAAATTGAGAAGCAAACATGTTTAC 57.420 30.769 22.87 17.69 40.48 2.01
5227 7213 8.177119 TGAGAAGCAAACATGTTTACCTTATT 57.823 30.769 22.87 17.18 0.00 1.40
5250 7236 0.231534 CACGCGCTCTTGCATCATAG 59.768 55.000 5.73 0.00 39.64 2.23
5251 7237 0.179100 ACGCGCTCTTGCATCATAGT 60.179 50.000 5.73 0.00 39.64 2.12
5252 7238 1.067060 ACGCGCTCTTGCATCATAGTA 59.933 47.619 5.73 0.00 39.64 1.82
5278 7264 0.257328 TTTCATGGGCCGGCTCATTA 59.743 50.000 39.21 29.36 34.41 1.90
5295 7282 3.119101 TCATTAAGGTTCTGGAGCGAGTC 60.119 47.826 0.00 0.00 0.00 3.36
5298 7285 0.251386 AGGTTCTGGAGCGAGTCTGA 60.251 55.000 0.00 0.00 0.00 3.27
5311 7298 5.277825 AGCGAGTCTGATTTATTCTTCTCG 58.722 41.667 0.00 0.00 39.70 4.04
5317 7304 6.481644 AGTCTGATTTATTCTTCTCGGCATTC 59.518 38.462 0.00 0.00 0.00 2.67
5318 7305 6.481644 GTCTGATTTATTCTTCTCGGCATTCT 59.518 38.462 0.00 0.00 0.00 2.40
5327 7327 2.179427 TCTCGGCATTCTTCTCTGGAA 58.821 47.619 0.00 0.00 0.00 3.53
5340 7340 2.105477 TCTCTGGAACTGCTGAGCTTTT 59.895 45.455 5.83 0.00 0.00 2.27
5383 7394 8.761575 AGTTTGTACAAATAATCCATTGCTTG 57.238 30.769 23.11 0.00 32.36 4.01
5407 7446 0.613260 TGGTGTGGCATACTGGTCTC 59.387 55.000 14.20 0.00 0.00 3.36
5422 7461 5.741388 CTGGTCTCCAGTTGTTAATATGC 57.259 43.478 7.55 0.00 45.82 3.14
5427 7466 6.374333 GGTCTCCAGTTGTTAATATGCTTTGA 59.626 38.462 0.00 0.00 0.00 2.69
5442 7482 4.375272 TGCTTTGATTTGATTTGCGGAAA 58.625 34.783 4.04 4.04 0.00 3.13
5452 7492 4.686972 TGATTTGCGGAAATTGTGTTTGA 58.313 34.783 16.39 0.00 31.58 2.69
5458 7498 2.350388 CGGAAATTGTGTTTGACTCCCG 60.350 50.000 0.00 0.00 0.00 5.14
5464 7504 2.434359 GTTTGACTCCCGGGCTCG 60.434 66.667 18.49 9.34 0.00 5.03
5474 7514 2.496341 CGGGCTCGATGAAGCTCA 59.504 61.111 0.00 0.00 43.29 4.26
5582 7622 8.318412 TGCTACTTATTGTAAAGTTCATGGAGA 58.682 33.333 0.00 0.00 40.20 3.71
5753 11692 9.466497 GAATCCTATAATGATTGCCTTTGGATA 57.534 33.333 2.70 0.00 32.74 2.59
5768 11708 5.008415 CCTTTGGATAGTGCATAGCAAAGAG 59.992 44.000 0.00 0.00 41.47 2.85
5809 11749 8.797266 AAGATTTACAAGAAAAAGTAAAGCGG 57.203 30.769 0.00 0.00 45.87 5.52
5812 11752 9.667989 GATTTACAAGAAAAAGTAAAGCGGTAA 57.332 29.630 0.00 0.00 41.75 2.85
5821 11761 6.541111 AAAGTAAAGCGGTAAAGTGAAGAG 57.459 37.500 0.00 0.00 0.00 2.85
5835 11775 5.669164 AGTGAAGAGGTATTGGACTTCTC 57.331 43.478 0.00 0.00 43.40 2.87
5849 11789 8.932945 ATTGGACTTCTCAAAAGAAAAAGAAC 57.067 30.769 0.00 0.00 40.95 3.01
5904 11848 0.179054 GGAACGAGGGGCATAGGAAC 60.179 60.000 0.00 0.00 0.00 3.62
5910 11854 0.326808 AGGGGCATAGGAACGGGTTA 60.327 55.000 0.00 0.00 0.00 2.85
5918 11862 6.232692 GGCATAGGAACGGGTTACATATTAA 58.767 40.000 0.00 0.00 0.00 1.40
5940 11884 0.917333 TGGGACCCCAACCCTATGAC 60.917 60.000 8.45 0.00 46.82 3.06
5943 11887 0.917333 GACCCCAACCCTATGACCCA 60.917 60.000 0.00 0.00 0.00 4.51
5946 11890 1.290732 CCCCAACCCTATGACCCAAAT 59.709 52.381 0.00 0.00 0.00 2.32
5957 11901 1.962807 TGACCCAAATGGCTTTCACAG 59.037 47.619 0.00 0.00 37.83 3.66
5960 11904 3.242011 ACCCAAATGGCTTTCACAGATT 58.758 40.909 0.00 0.00 37.83 2.40
5964 11908 5.179929 CCCAAATGGCTTTCACAGATTTTTC 59.820 40.000 0.00 0.00 0.00 2.29
5965 11909 5.179929 CCAAATGGCTTTCACAGATTTTTCC 59.820 40.000 0.00 0.00 0.00 3.13
5966 11910 4.541973 ATGGCTTTCACAGATTTTTCCC 57.458 40.909 0.00 0.00 0.00 3.97
5969 11913 2.352715 GCTTTCACAGATTTTTCCCCCG 60.353 50.000 0.00 0.00 0.00 5.73
5970 11914 2.668144 TTCACAGATTTTTCCCCCGT 57.332 45.000 0.00 0.00 0.00 5.28
5977 11921 4.948004 ACAGATTTTTCCCCCGTAAGATTC 59.052 41.667 0.00 0.00 43.02 2.52
5982 11926 4.417426 TTTCCCCCGTAAGATTCAGATC 57.583 45.455 0.00 0.00 43.02 2.75
6019 11963 8.796475 TCTAACAAAAATTCTTCAATCCAGAGG 58.204 33.333 0.00 0.00 0.00 3.69
6020 11964 5.787380 ACAAAAATTCTTCAATCCAGAGGC 58.213 37.500 0.00 0.00 0.00 4.70
6029 11973 1.134699 CAATCCAGAGGCGCTCTTGTA 60.135 52.381 7.64 0.00 38.99 2.41
6030 11974 1.418334 ATCCAGAGGCGCTCTTGTAT 58.582 50.000 7.64 0.00 38.99 2.29
6031 11975 0.461548 TCCAGAGGCGCTCTTGTATG 59.538 55.000 7.64 1.57 38.99 2.39
6032 11976 0.531532 CCAGAGGCGCTCTTGTATGG 60.532 60.000 7.64 6.66 38.99 2.74
6033 11977 0.176680 CAGAGGCGCTCTTGTATGGT 59.823 55.000 7.64 0.00 38.99 3.55
6034 11978 0.905357 AGAGGCGCTCTTGTATGGTT 59.095 50.000 7.64 0.00 37.60 3.67
6035 11979 1.009829 GAGGCGCTCTTGTATGGTTG 58.990 55.000 7.64 0.00 0.00 3.77
6036 11980 0.392998 AGGCGCTCTTGTATGGTTGG 60.393 55.000 7.64 0.00 0.00 3.77
6037 11981 0.676782 GGCGCTCTTGTATGGTTGGT 60.677 55.000 7.64 0.00 0.00 3.67
6038 11982 1.406341 GGCGCTCTTGTATGGTTGGTA 60.406 52.381 7.64 0.00 0.00 3.25
6039 11983 1.933853 GCGCTCTTGTATGGTTGGTAG 59.066 52.381 0.00 0.00 0.00 3.18
6040 11984 2.550978 CGCTCTTGTATGGTTGGTAGG 58.449 52.381 0.00 0.00 0.00 3.18
6041 11985 2.167693 CGCTCTTGTATGGTTGGTAGGA 59.832 50.000 0.00 0.00 0.00 2.94
6042 11986 3.369052 CGCTCTTGTATGGTTGGTAGGAA 60.369 47.826 0.00 0.00 0.00 3.36
6043 11987 4.192317 GCTCTTGTATGGTTGGTAGGAAG 58.808 47.826 0.00 0.00 0.00 3.46
6044 11988 4.192317 CTCTTGTATGGTTGGTAGGAAGC 58.808 47.826 0.00 0.00 0.00 3.86
6045 11989 2.684001 TGTATGGTTGGTAGGAAGCG 57.316 50.000 0.00 0.00 0.00 4.68
6046 11990 1.903860 TGTATGGTTGGTAGGAAGCGT 59.096 47.619 0.00 0.00 0.00 5.07
6047 11991 2.277084 GTATGGTTGGTAGGAAGCGTG 58.723 52.381 0.00 0.00 0.00 5.34
6048 11992 0.035439 ATGGTTGGTAGGAAGCGTGG 60.035 55.000 0.00 0.00 0.00 4.94
6049 11993 2.038837 GGTTGGTAGGAAGCGTGGC 61.039 63.158 0.00 0.00 0.00 5.01
6050 11994 1.003718 GTTGGTAGGAAGCGTGGCT 60.004 57.895 0.00 0.00 42.56 4.75
6051 11995 1.019805 GTTGGTAGGAAGCGTGGCTC 61.020 60.000 0.00 0.00 38.25 4.70
6052 11996 2.202756 GGTAGGAAGCGTGGCTCG 60.203 66.667 4.32 4.32 38.25 5.03
6053 11997 2.707849 GGTAGGAAGCGTGGCTCGA 61.708 63.158 13.77 0.00 38.25 4.04
6054 11998 1.226717 GTAGGAAGCGTGGCTCGAG 60.227 63.158 13.77 8.45 38.25 4.04
6055 11999 3.064987 TAGGAAGCGTGGCTCGAGC 62.065 63.158 29.38 29.38 38.25 5.03
6056 12000 4.742201 GGAAGCGTGGCTCGAGCA 62.742 66.667 36.27 20.82 44.36 4.26
6057 12001 3.184683 GAAGCGTGGCTCGAGCAG 61.185 66.667 36.27 26.55 44.36 4.24
6069 12013 4.748409 GAGCAGCTCGGGATTCTC 57.252 61.111 6.67 0.00 0.00 2.87
6070 12014 1.819229 GAGCAGCTCGGGATTCTCA 59.181 57.895 6.67 0.00 0.00 3.27
6071 12015 0.529555 GAGCAGCTCGGGATTCTCAC 60.530 60.000 6.67 0.00 0.00 3.51
6072 12016 1.219124 GCAGCTCGGGATTCTCACA 59.781 57.895 0.00 0.00 0.00 3.58
6073 12017 0.179062 GCAGCTCGGGATTCTCACAT 60.179 55.000 0.00 0.00 0.00 3.21
6074 12018 1.579698 CAGCTCGGGATTCTCACATG 58.420 55.000 0.00 0.00 0.00 3.21
6075 12019 0.179062 AGCTCGGGATTCTCACATGC 60.179 55.000 0.00 0.00 0.00 4.06
6076 12020 0.462581 GCTCGGGATTCTCACATGCA 60.463 55.000 0.00 0.00 0.00 3.96
6077 12021 1.579698 CTCGGGATTCTCACATGCAG 58.420 55.000 0.00 0.00 0.00 4.41
6078 12022 0.178767 TCGGGATTCTCACATGCAGG 59.821 55.000 0.00 0.00 0.00 4.85
6079 12023 0.816825 CGGGATTCTCACATGCAGGG 60.817 60.000 2.31 0.00 0.00 4.45
6080 12024 0.466922 GGGATTCTCACATGCAGGGG 60.467 60.000 2.31 0.00 0.00 4.79
6081 12025 1.105759 GGATTCTCACATGCAGGGGC 61.106 60.000 2.31 0.00 41.68 5.80
6082 12026 1.442526 GATTCTCACATGCAGGGGCG 61.443 60.000 2.31 0.00 45.35 6.13
6083 12027 2.898920 ATTCTCACATGCAGGGGCGG 62.899 60.000 2.31 0.00 45.35 6.13
6084 12028 4.100084 CTCACATGCAGGGGCGGA 62.100 66.667 2.31 0.00 45.35 5.54
6085 12029 3.410628 TCACATGCAGGGGCGGAT 61.411 61.111 2.31 0.00 45.35 4.18
6086 12030 2.903855 CACATGCAGGGGCGGATC 60.904 66.667 2.31 0.00 45.35 3.36
6087 12031 4.195334 ACATGCAGGGGCGGATCC 62.195 66.667 2.31 0.00 45.35 3.36
6088 12032 4.193893 CATGCAGGGGCGGATCCA 62.194 66.667 13.41 0.00 45.35 3.41
6089 12033 3.882326 ATGCAGGGGCGGATCCAG 61.882 66.667 13.41 5.88 45.35 3.86
6092 12036 2.844362 CAGGGGCGGATCCAGCTA 60.844 66.667 22.14 0.00 36.21 3.32
6093 12037 2.205462 AGGGGCGGATCCAGCTAT 59.795 61.111 22.14 10.16 36.21 2.97
6094 12038 0.904865 CAGGGGCGGATCCAGCTATA 60.905 60.000 22.14 0.00 36.21 1.31
6095 12039 0.043334 AGGGGCGGATCCAGCTATAT 59.957 55.000 22.14 8.55 36.21 0.86
6096 12040 0.179000 GGGGCGGATCCAGCTATATG 59.821 60.000 22.14 2.20 36.21 1.78
6097 12041 0.179000 GGGCGGATCCAGCTATATGG 59.821 60.000 22.14 1.55 42.11 2.74
6098 12042 0.462759 GGCGGATCCAGCTATATGGC 60.463 60.000 22.14 2.23 40.41 4.40
6099 12043 0.807667 GCGGATCCAGCTATATGGCG 60.808 60.000 13.41 1.02 40.41 5.69
6100 12044 0.817654 CGGATCCAGCTATATGGCGA 59.182 55.000 13.41 0.00 40.41 5.54
6101 12045 1.202348 CGGATCCAGCTATATGGCGAG 60.202 57.143 13.41 2.70 40.41 5.03
6102 12046 1.137872 GGATCCAGCTATATGGCGAGG 59.862 57.143 16.05 16.05 40.41 4.63
6103 12047 1.827969 GATCCAGCTATATGGCGAGGT 59.172 52.381 19.63 7.07 40.41 3.85
6104 12048 1.717032 TCCAGCTATATGGCGAGGTT 58.283 50.000 19.63 0.00 40.41 3.50
6105 12049 2.047061 TCCAGCTATATGGCGAGGTTT 58.953 47.619 19.63 0.00 40.41 3.27
6106 12050 2.146342 CCAGCTATATGGCGAGGTTTG 58.854 52.381 14.58 3.74 37.29 2.93
6107 12051 2.146342 CAGCTATATGGCGAGGTTTGG 58.854 52.381 5.31 0.00 37.29 3.28
6108 12052 0.875059 GCTATATGGCGAGGTTTGGC 59.125 55.000 0.00 0.00 0.00 4.52
6109 12053 1.813862 GCTATATGGCGAGGTTTGGCA 60.814 52.381 0.00 0.00 46.52 4.92
6110 12054 2.146342 CTATATGGCGAGGTTTGGCAG 58.854 52.381 0.00 0.00 45.62 4.85
6111 12055 1.103398 ATATGGCGAGGTTTGGCAGC 61.103 55.000 0.00 0.00 45.62 5.25
6124 12068 4.551729 GCAGCCGCCATACCTAAA 57.448 55.556 0.00 0.00 0.00 1.85
6125 12069 2.788515 GCAGCCGCCATACCTAAAA 58.211 52.632 0.00 0.00 0.00 1.52
6126 12070 1.318576 GCAGCCGCCATACCTAAAAT 58.681 50.000 0.00 0.00 0.00 1.82
6127 12071 1.681264 GCAGCCGCCATACCTAAAATT 59.319 47.619 0.00 0.00 0.00 1.82
6128 12072 2.100749 GCAGCCGCCATACCTAAAATTT 59.899 45.455 0.00 0.00 0.00 1.82
6129 12073 3.705604 CAGCCGCCATACCTAAAATTTG 58.294 45.455 0.00 0.00 0.00 2.32
6130 12074 2.693074 AGCCGCCATACCTAAAATTTGG 59.307 45.455 0.00 0.00 0.00 3.28
6140 12084 9.665719 CCATACCTAAAATTTGGCAAAAGTATT 57.334 29.630 17.70 11.48 0.00 1.89
6142 12086 7.433708 ACCTAAAATTTGGCAAAAGTATTGC 57.566 32.000 17.70 4.64 44.22 3.56
6143 12087 6.995091 ACCTAAAATTTGGCAAAAGTATTGCA 59.005 30.769 17.70 0.00 46.58 4.08
6144 12088 7.665145 ACCTAAAATTTGGCAAAAGTATTGCAT 59.335 29.630 17.70 0.00 46.58 3.96
6145 12089 9.160496 CCTAAAATTTGGCAAAAGTATTGCATA 57.840 29.630 17.70 1.65 46.58 3.14
6173 12117 7.721286 ATACTGTATGTATGAAGCTTTGAGC 57.279 36.000 0.00 0.00 40.12 4.26
6174 12118 7.504403 ATACTGTATGTATGAAGCTTTGAGCT 58.496 34.615 0.00 0.00 45.86 4.09
6175 12119 7.440556 ATACTGTATGTATGAAGCTTTGAGCTG 59.559 37.037 0.00 0.00 44.49 4.24
6184 12128 2.915738 GCTTTGAGCTGAGTCAATGG 57.084 50.000 0.00 0.00 38.45 3.16
6185 12129 2.430465 GCTTTGAGCTGAGTCAATGGA 58.570 47.619 0.00 0.00 38.45 3.41
6186 12130 3.015327 GCTTTGAGCTGAGTCAATGGAT 58.985 45.455 0.00 0.00 38.45 3.41
6187 12131 3.442977 GCTTTGAGCTGAGTCAATGGATT 59.557 43.478 0.00 0.00 38.45 3.01
6188 12132 4.082354 GCTTTGAGCTGAGTCAATGGATTT 60.082 41.667 0.00 0.00 38.45 2.17
6189 12133 5.566230 GCTTTGAGCTGAGTCAATGGATTTT 60.566 40.000 0.00 0.00 38.45 1.82
6190 12134 6.409524 TTTGAGCTGAGTCAATGGATTTTT 57.590 33.333 0.00 0.00 36.34 1.94
6191 12135 5.381174 TGAGCTGAGTCAATGGATTTTTG 57.619 39.130 0.00 0.00 0.00 2.44
6192 12136 4.219070 TGAGCTGAGTCAATGGATTTTTGG 59.781 41.667 0.00 0.00 0.00 3.28
6193 12137 4.154942 AGCTGAGTCAATGGATTTTTGGT 58.845 39.130 0.00 0.00 0.00 3.67
6194 12138 4.219288 AGCTGAGTCAATGGATTTTTGGTC 59.781 41.667 0.00 0.00 0.00 4.02
6195 12139 4.022068 GCTGAGTCAATGGATTTTTGGTCA 60.022 41.667 0.00 0.00 0.00 4.02
6196 12140 5.706916 CTGAGTCAATGGATTTTTGGTCAG 58.293 41.667 0.00 0.00 33.37 3.51
6197 12141 5.139727 TGAGTCAATGGATTTTTGGTCAGT 58.860 37.500 0.00 0.00 0.00 3.41
6198 12142 5.598005 TGAGTCAATGGATTTTTGGTCAGTT 59.402 36.000 0.00 0.00 0.00 3.16
6199 12143 6.098124 TGAGTCAATGGATTTTTGGTCAGTTT 59.902 34.615 0.00 0.00 0.00 2.66
6200 12144 6.515832 AGTCAATGGATTTTTGGTCAGTTTC 58.484 36.000 0.00 0.00 0.00 2.78
6201 12145 5.402270 GTCAATGGATTTTTGGTCAGTTTCG 59.598 40.000 0.00 0.00 0.00 3.46
6202 12146 5.068460 TCAATGGATTTTTGGTCAGTTTCGT 59.932 36.000 0.00 0.00 0.00 3.85
6203 12147 4.561735 TGGATTTTTGGTCAGTTTCGTC 57.438 40.909 0.00 0.00 0.00 4.20
6204 12148 3.948473 TGGATTTTTGGTCAGTTTCGTCA 59.052 39.130 0.00 0.00 0.00 4.35
6205 12149 4.399618 TGGATTTTTGGTCAGTTTCGTCAA 59.600 37.500 0.00 0.00 0.00 3.18
6206 12150 5.068460 TGGATTTTTGGTCAGTTTCGTCAAT 59.932 36.000 0.00 0.00 0.00 2.57
6207 12151 5.983118 GGATTTTTGGTCAGTTTCGTCAATT 59.017 36.000 0.00 0.00 0.00 2.32
6208 12152 6.478673 GGATTTTTGGTCAGTTTCGTCAATTT 59.521 34.615 0.00 0.00 0.00 1.82
6209 12153 6.639671 TTTTTGGTCAGTTTCGTCAATTTG 57.360 33.333 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.878127 GGCATCTATTGGTAATGAAGTAGCTTA 59.122 37.037 0.00 0.00 0.00 3.09
1 2 6.712547 GGCATCTATTGGTAATGAAGTAGCTT 59.287 38.462 0.00 0.00 0.00 3.74
2 3 6.043706 AGGCATCTATTGGTAATGAAGTAGCT 59.956 38.462 0.00 0.00 0.00 3.32
3 4 6.148480 CAGGCATCTATTGGTAATGAAGTAGC 59.852 42.308 0.00 0.00 0.00 3.58
4 5 6.148480 GCAGGCATCTATTGGTAATGAAGTAG 59.852 42.308 0.00 0.00 0.00 2.57
5 6 5.997746 GCAGGCATCTATTGGTAATGAAGTA 59.002 40.000 0.00 0.00 0.00 2.24
6 7 4.823989 GCAGGCATCTATTGGTAATGAAGT 59.176 41.667 0.00 0.00 0.00 3.01
7 8 5.068636 AGCAGGCATCTATTGGTAATGAAG 58.931 41.667 0.00 0.00 0.00 3.02
8 9 5.052693 AGCAGGCATCTATTGGTAATGAA 57.947 39.130 0.00 0.00 0.00 2.57
9 10 4.712051 AGCAGGCATCTATTGGTAATGA 57.288 40.909 0.00 0.00 0.00 2.57
10 11 5.278660 GGAAAGCAGGCATCTATTGGTAATG 60.279 44.000 0.00 0.00 0.00 1.90
11 12 4.829492 GGAAAGCAGGCATCTATTGGTAAT 59.171 41.667 0.00 0.00 0.00 1.89
12 13 4.207165 GGAAAGCAGGCATCTATTGGTAA 58.793 43.478 0.00 0.00 0.00 2.85
13 14 3.201930 TGGAAAGCAGGCATCTATTGGTA 59.798 43.478 0.00 0.00 0.00 3.25
14 15 2.025037 TGGAAAGCAGGCATCTATTGGT 60.025 45.455 0.00 0.00 0.00 3.67
15 16 2.360165 GTGGAAAGCAGGCATCTATTGG 59.640 50.000 0.00 0.00 0.00 3.16
16 17 2.360165 GGTGGAAAGCAGGCATCTATTG 59.640 50.000 0.00 0.00 0.00 1.90
17 18 2.025037 TGGTGGAAAGCAGGCATCTATT 60.025 45.455 0.00 0.00 0.00 1.73
18 19 1.565759 TGGTGGAAAGCAGGCATCTAT 59.434 47.619 0.00 0.00 0.00 1.98
19 20 0.991146 TGGTGGAAAGCAGGCATCTA 59.009 50.000 0.00 0.00 0.00 1.98
20 21 0.333993 ATGGTGGAAAGCAGGCATCT 59.666 50.000 0.00 0.00 0.00 2.90
21 22 1.134907 CAATGGTGGAAAGCAGGCATC 60.135 52.381 0.00 0.00 0.00 3.91
22 23 0.899720 CAATGGTGGAAAGCAGGCAT 59.100 50.000 0.00 0.00 0.00 4.40
23 24 0.178967 TCAATGGTGGAAAGCAGGCA 60.179 50.000 0.00 0.00 0.00 4.75
24 25 0.244721 GTCAATGGTGGAAAGCAGGC 59.755 55.000 0.00 0.00 0.00 4.85
25 26 1.619654 TGTCAATGGTGGAAAGCAGG 58.380 50.000 0.00 0.00 0.00 4.85
26 27 3.226346 CATGTCAATGGTGGAAAGCAG 57.774 47.619 0.00 0.00 0.00 4.24
37 38 4.034858 CAGCTTGCTACTACCATGTCAATG 59.965 45.833 0.00 0.00 0.00 2.82
38 39 4.194640 CAGCTTGCTACTACCATGTCAAT 58.805 43.478 0.00 0.00 0.00 2.57
39 40 3.599343 CAGCTTGCTACTACCATGTCAA 58.401 45.455 0.00 0.00 0.00 3.18
40 41 2.677902 GCAGCTTGCTACTACCATGTCA 60.678 50.000 0.00 0.00 40.96 3.58
41 42 1.936547 GCAGCTTGCTACTACCATGTC 59.063 52.381 0.00 0.00 40.96 3.06
42 43 1.278985 TGCAGCTTGCTACTACCATGT 59.721 47.619 9.12 0.00 45.31 3.21
43 44 2.028420 TGCAGCTTGCTACTACCATG 57.972 50.000 9.12 0.00 45.31 3.66
44 45 2.787473 TTGCAGCTTGCTACTACCAT 57.213 45.000 9.12 0.00 45.31 3.55
45 46 2.552315 GTTTTGCAGCTTGCTACTACCA 59.448 45.455 9.12 0.00 45.31 3.25
46 47 2.814336 AGTTTTGCAGCTTGCTACTACC 59.186 45.455 9.12 0.00 45.31 3.18
47 48 3.498397 TGAGTTTTGCAGCTTGCTACTAC 59.502 43.478 9.12 3.94 45.31 2.73
48 49 3.738982 TGAGTTTTGCAGCTTGCTACTA 58.261 40.909 9.12 0.00 45.31 1.82
49 50 2.575532 TGAGTTTTGCAGCTTGCTACT 58.424 42.857 9.12 9.14 45.31 2.57
50 51 3.240069 CATGAGTTTTGCAGCTTGCTAC 58.760 45.455 9.12 0.00 45.31 3.58
51 52 2.352030 GCATGAGTTTTGCAGCTTGCTA 60.352 45.455 0.00 0.00 45.31 3.49
52 53 1.604693 GCATGAGTTTTGCAGCTTGCT 60.605 47.619 0.00 0.00 45.31 3.91
53 54 0.788391 GCATGAGTTTTGCAGCTTGC 59.212 50.000 0.00 1.70 45.29 4.01
54 55 1.269883 TGGCATGAGTTTTGCAGCTTG 60.270 47.619 0.00 0.00 41.95 4.01
55 56 1.042229 TGGCATGAGTTTTGCAGCTT 58.958 45.000 0.00 0.00 41.95 3.74
56 57 1.203994 GATGGCATGAGTTTTGCAGCT 59.796 47.619 3.81 0.00 41.95 4.24
57 58 1.067425 TGATGGCATGAGTTTTGCAGC 60.067 47.619 3.81 0.00 41.95 5.25
58 59 3.520290 ATGATGGCATGAGTTTTGCAG 57.480 42.857 3.81 0.00 41.95 4.41
59 60 4.645588 TCATATGATGGCATGAGTTTTGCA 59.354 37.500 3.81 0.00 41.95 4.08
60 61 5.190992 TCATATGATGGCATGAGTTTTGC 57.809 39.130 3.81 0.00 39.41 3.68
61 62 7.307160 GCAAATCATATGATGGCATGAGTTTTG 60.307 37.037 26.03 19.69 37.36 2.44
62 63 6.704493 GCAAATCATATGATGGCATGAGTTTT 59.296 34.615 26.03 11.04 37.36 2.43
63 64 6.220930 GCAAATCATATGATGGCATGAGTTT 58.779 36.000 26.03 11.60 37.36 2.66
64 65 5.279306 GGCAAATCATATGATGGCATGAGTT 60.279 40.000 29.22 13.96 39.34 3.01
65 66 4.219944 GGCAAATCATATGATGGCATGAGT 59.780 41.667 29.22 9.69 37.38 3.41
66 67 4.674362 CGGCAAATCATATGATGGCATGAG 60.674 45.833 29.22 19.13 37.38 2.90
67 68 3.191791 CGGCAAATCATATGATGGCATGA 59.808 43.478 29.22 0.00 37.38 3.07
68 69 3.507786 CGGCAAATCATATGATGGCATG 58.492 45.455 29.22 21.66 37.38 4.06
69 70 2.494471 CCGGCAAATCATATGATGGCAT 59.506 45.455 29.22 0.00 37.38 4.40
70 71 1.887854 CCGGCAAATCATATGATGGCA 59.112 47.619 29.22 4.61 37.38 4.92
71 72 1.403249 GCCGGCAAATCATATGATGGC 60.403 52.381 24.80 24.26 35.91 4.40
72 73 1.203052 GGCCGGCAAATCATATGATGG 59.797 52.381 30.85 15.26 34.49 3.51
73 74 2.094906 CAGGCCGGCAAATCATATGATG 60.095 50.000 30.85 10.22 34.49 3.07
81 82 0.388520 GTTTGACAGGCCGGCAAATC 60.389 55.000 30.85 21.36 34.47 2.17
90 91 1.444119 TTGACTGCGGTTTGACAGGC 61.444 55.000 0.00 0.00 42.61 4.85
117 119 5.641209 AGCAAATGATACGAGAATATGAGGC 59.359 40.000 0.00 0.00 0.00 4.70
120 122 5.409520 GGCAGCAAATGATACGAGAATATGA 59.590 40.000 0.00 0.00 0.00 2.15
121 123 5.391310 GGGCAGCAAATGATACGAGAATATG 60.391 44.000 0.00 0.00 0.00 1.78
122 124 4.697352 GGGCAGCAAATGATACGAGAATAT 59.303 41.667 0.00 0.00 0.00 1.28
123 125 4.065088 GGGCAGCAAATGATACGAGAATA 58.935 43.478 0.00 0.00 0.00 1.75
124 126 2.880890 GGGCAGCAAATGATACGAGAAT 59.119 45.455 0.00 0.00 0.00 2.40
125 127 2.092968 AGGGCAGCAAATGATACGAGAA 60.093 45.455 0.00 0.00 0.00 2.87
126 128 1.486310 AGGGCAGCAAATGATACGAGA 59.514 47.619 0.00 0.00 0.00 4.04
127 129 1.959042 AGGGCAGCAAATGATACGAG 58.041 50.000 0.00 0.00 0.00 4.18
128 130 3.070878 TGATAGGGCAGCAAATGATACGA 59.929 43.478 0.00 0.00 0.00 3.43
129 131 3.187227 GTGATAGGGCAGCAAATGATACG 59.813 47.826 0.00 0.00 0.00 3.06
130 132 4.214971 CAGTGATAGGGCAGCAAATGATAC 59.785 45.833 0.00 0.00 0.00 2.24
131 133 4.141413 ACAGTGATAGGGCAGCAAATGATA 60.141 41.667 0.00 0.00 0.00 2.15
132 134 3.220110 CAGTGATAGGGCAGCAAATGAT 58.780 45.455 0.00 0.00 0.00 2.45
146 148 6.572119 GCAAATGGGTTTCAATGACAGTGATA 60.572 38.462 6.40 0.00 0.00 2.15
158 160 0.835543 CCCCCTGCAAATGGGTTTCA 60.836 55.000 13.12 0.00 43.09 2.69
207 209 5.035443 GCTGACATTGCTCTTCAAATGATC 58.965 41.667 2.60 0.00 38.34 2.92
208 210 4.461431 TGCTGACATTGCTCTTCAAATGAT 59.539 37.500 2.60 0.00 38.34 2.45
209 211 3.822167 TGCTGACATTGCTCTTCAAATGA 59.178 39.130 2.60 0.00 38.34 2.57
210 212 4.166523 CTGCTGACATTGCTCTTCAAATG 58.833 43.478 0.00 0.00 38.34 2.32
211 213 3.367087 GCTGCTGACATTGCTCTTCAAAT 60.367 43.478 0.00 0.00 38.34 2.32
212 214 2.030540 GCTGCTGACATTGCTCTTCAAA 60.031 45.455 0.00 0.00 38.34 2.69
220 222 1.080974 GGTGTGCTGCTGACATTGC 60.081 57.895 0.00 0.00 0.00 3.56
222 224 2.637521 CAGGTGTGCTGCTGACATT 58.362 52.632 0.00 0.00 0.00 2.71
234 255 1.985159 TGTTAATGGAGGAGCAGGTGT 59.015 47.619 0.00 0.00 0.00 4.16
273 294 2.411765 CTTGGAGGGTGGTGGTGGAC 62.412 65.000 0.00 0.00 0.00 4.02
274 295 2.039298 TTGGAGGGTGGTGGTGGA 60.039 61.111 0.00 0.00 0.00 4.02
311 350 2.359975 GTGTGTACTGGGCTGGGC 60.360 66.667 0.00 0.00 0.00 5.36
381 421 0.179111 TTGATGACGGGCGATGACTC 60.179 55.000 0.00 0.00 0.00 3.36
401 441 0.790866 GATTTCTGCGTCGCAACAGC 60.791 55.000 22.01 6.90 38.41 4.40
472 512 5.610398 TCTTGCTAATCTGACAAGAACACA 58.390 37.500 6.10 0.00 44.97 3.72
546 596 8.097662 GGGAGTAAGCTTTATGCATTAGACTAT 58.902 37.037 3.54 0.00 45.94 2.12
549 599 6.017852 GTGGGAGTAAGCTTTATGCATTAGAC 60.018 42.308 3.54 0.00 45.94 2.59
623 673 1.929836 GCTTTCTGCTACAGTGATCCG 59.070 52.381 0.00 0.00 38.95 4.18
628 678 3.433615 GTGTTAGGCTTTCTGCTACAGTG 59.566 47.826 0.00 0.00 42.39 3.66
657 707 0.464036 CCATGCCAGCTCGGTTAGTA 59.536 55.000 4.45 0.00 36.97 1.82
700 750 0.249868 GTGCAAAACTGGGGAAAGGC 60.250 55.000 0.00 0.00 0.00 4.35
719 769 1.784062 CCTCTTCGTTCTTGCTGCG 59.216 57.895 0.00 0.00 0.00 5.18
741 791 5.819825 TCATTATCGTATCCCATCTCTCG 57.180 43.478 0.00 0.00 0.00 4.04
759 809 8.120538 AGGCCAGGAAAATCATATCATATCATT 58.879 33.333 5.01 0.00 0.00 2.57
779 837 1.153756 ACCTTTTCACCCAGGCCAG 59.846 57.895 5.01 0.00 32.79 4.85
816 876 5.536161 TGGATAAATACGTACTACCTCACCC 59.464 44.000 0.00 0.00 0.00 4.61
818 878 7.088905 CCATGGATAAATACGTACTACCTCAC 58.911 42.308 5.56 0.00 0.00 3.51
854 919 1.007387 CGCACAACTTTTCCCCTGC 60.007 57.895 0.00 0.00 0.00 4.85
1044 1120 0.807496 GAAGAGGCGAGCAAGCAATT 59.193 50.000 5.80 0.00 39.27 2.32
1045 1121 1.028868 GGAAGAGGCGAGCAAGCAAT 61.029 55.000 5.80 0.00 39.27 3.56
1047 1123 2.046892 GGAAGAGGCGAGCAAGCA 60.047 61.111 5.80 0.00 39.27 3.91
1055 1131 0.324943 TTTTGGAGAGGGAAGAGGCG 59.675 55.000 0.00 0.00 0.00 5.52
1140 1236 6.145209 CGACAGTAAGCTCCAAATGATCTATG 59.855 42.308 0.00 0.00 0.00 2.23
1142 1238 5.592054 CGACAGTAAGCTCCAAATGATCTA 58.408 41.667 0.00 0.00 0.00 1.98
1187 1283 1.884235 CAAACGAGGAGCTCCAAAGT 58.116 50.000 33.90 25.23 38.89 2.66
1188 1284 0.519077 GCAAACGAGGAGCTCCAAAG 59.481 55.000 33.90 24.60 38.89 2.77
1189 1285 0.889186 GGCAAACGAGGAGCTCCAAA 60.889 55.000 33.90 0.00 38.89 3.28
1228 1326 2.766229 GGAGCAGGGAGGGAGGAC 60.766 72.222 0.00 0.00 0.00 3.85
1309 1407 2.666317 GAAGAAGAGGAGGAGGAGGAG 58.334 57.143 0.00 0.00 0.00 3.69
1312 1410 2.666317 GAGGAAGAAGAGGAGGAGGAG 58.334 57.143 0.00 0.00 0.00 3.69
1313 1411 1.289530 GGAGGAAGAAGAGGAGGAGGA 59.710 57.143 0.00 0.00 0.00 3.71
1314 1412 1.290732 AGGAGGAAGAAGAGGAGGAGG 59.709 57.143 0.00 0.00 0.00 4.30
1315 1413 2.765699 CAAGGAGGAAGAAGAGGAGGAG 59.234 54.545 0.00 0.00 0.00 3.69
1316 1414 2.112691 ACAAGGAGGAAGAAGAGGAGGA 59.887 50.000 0.00 0.00 0.00 3.71
1317 1415 2.499693 GACAAGGAGGAAGAAGAGGAGG 59.500 54.545 0.00 0.00 0.00 4.30
1318 1416 3.440127 AGACAAGGAGGAAGAAGAGGAG 58.560 50.000 0.00 0.00 0.00 3.69
1319 1417 3.436243 GAGACAAGGAGGAAGAAGAGGA 58.564 50.000 0.00 0.00 0.00 3.71
1320 1418 2.499693 GGAGACAAGGAGGAAGAAGAGG 59.500 54.545 0.00 0.00 0.00 3.69
1321 1419 2.499693 GGGAGACAAGGAGGAAGAAGAG 59.500 54.545 0.00 0.00 0.00 2.85
1532 1641 2.126467 GCAAATCTTTCAGCGCAAACA 58.874 42.857 11.47 0.00 0.00 2.83
1554 1675 2.071778 AACCAAAGAAGCTGGCAGAA 57.928 45.000 20.86 0.00 37.48 3.02
1562 1683 5.650543 TCTTCACAAGAAAACCAAAGAAGC 58.349 37.500 0.00 0.00 33.83 3.86
1666 1787 3.520569 GCCAAAAGTTTTGTCTGAAGCA 58.479 40.909 23.29 0.00 0.00 3.91
1686 1807 2.869503 TACCGCTTGCTTAGGCTGGC 62.870 60.000 0.00 1.87 39.59 4.85
1689 1810 0.902531 TCTTACCGCTTGCTTAGGCT 59.097 50.000 0.00 0.00 39.59 4.58
1721 1842 2.787601 ACATTGTTGAAGCTGCACAG 57.212 45.000 0.00 0.00 0.00 3.66
1724 1845 3.989167 GCAAATACATTGTTGAAGCTGCA 59.011 39.130 1.02 0.00 41.32 4.41
1737 1858 6.088016 TCAAAGAAACTGCAGCAAATACAT 57.912 33.333 15.27 0.00 0.00 2.29
1741 1862 6.539464 TCAAAATCAAAGAAACTGCAGCAAAT 59.461 30.769 15.27 0.00 0.00 2.32
1799 1949 1.425066 TCTTCACCTTGGCCTTCACAT 59.575 47.619 3.32 0.00 0.00 3.21
1847 1997 4.767255 AGCTTTGCGCCCCTCTCG 62.767 66.667 4.18 0.00 40.39 4.04
2004 2161 1.084370 AGCAAGCACGCGGATAAGAC 61.084 55.000 12.47 0.00 36.85 3.01
2053 3425 3.760580 ATCATCAAGGCTACCTACTGC 57.239 47.619 0.00 0.00 31.13 4.40
2102 3887 6.432783 TGTTCAGGAACTTCTCTCAACAAAAA 59.567 34.615 12.86 0.00 41.67 1.94
2103 3888 5.943416 TGTTCAGGAACTTCTCTCAACAAAA 59.057 36.000 12.86 0.00 41.67 2.44
2104 3889 5.496556 TGTTCAGGAACTTCTCTCAACAAA 58.503 37.500 12.86 0.00 41.67 2.83
2105 3890 5.097742 TGTTCAGGAACTTCTCTCAACAA 57.902 39.130 12.86 0.00 41.67 2.83
2106 3891 4.753516 TGTTCAGGAACTTCTCTCAACA 57.246 40.909 12.86 0.00 41.67 3.33
2107 3892 6.459923 AGTATGTTCAGGAACTTCTCTCAAC 58.540 40.000 12.86 2.17 41.67 3.18
2108 3893 6.495181 AGAGTATGTTCAGGAACTTCTCTCAA 59.505 38.462 20.85 3.21 41.67 3.02
2109 3894 6.013379 AGAGTATGTTCAGGAACTTCTCTCA 58.987 40.000 20.85 3.76 41.67 3.27
2110 3895 6.377146 AGAGAGTATGTTCAGGAACTTCTCTC 59.623 42.308 28.23 28.23 45.58 3.20
2111 3896 6.152661 CAGAGAGTATGTTCAGGAACTTCTCT 59.847 42.308 21.40 21.40 40.96 3.10
2112 3897 6.151985 TCAGAGAGTATGTTCAGGAACTTCTC 59.848 42.308 12.86 16.12 41.67 2.87
2113 3898 6.013379 TCAGAGAGTATGTTCAGGAACTTCT 58.987 40.000 12.86 10.02 41.67 2.85
2114 3899 6.274157 TCAGAGAGTATGTTCAGGAACTTC 57.726 41.667 12.86 6.21 41.67 3.01
2115 3900 6.268847 AGTTCAGAGAGTATGTTCAGGAACTT 59.731 38.462 12.86 9.26 41.67 2.66
2116 3901 5.777732 AGTTCAGAGAGTATGTTCAGGAACT 59.222 40.000 12.86 0.00 41.67 3.01
2117 3902 6.031751 AGTTCAGAGAGTATGTTCAGGAAC 57.968 41.667 5.23 5.23 41.50 3.62
2118 3903 6.459066 CAAGTTCAGAGAGTATGTTCAGGAA 58.541 40.000 0.00 0.00 0.00 3.36
2119 3904 5.047021 CCAAGTTCAGAGAGTATGTTCAGGA 60.047 44.000 0.00 0.00 0.00 3.86
2120 3905 5.174395 CCAAGTTCAGAGAGTATGTTCAGG 58.826 45.833 0.00 0.00 0.00 3.86
2121 3906 5.788450 ACCAAGTTCAGAGAGTATGTTCAG 58.212 41.667 0.00 0.00 0.00 3.02
2122 3907 5.808366 ACCAAGTTCAGAGAGTATGTTCA 57.192 39.130 0.00 0.00 0.00 3.18
2123 3908 6.146347 GTCAACCAAGTTCAGAGAGTATGTTC 59.854 42.308 0.00 0.00 0.00 3.18
2124 3909 5.992217 GTCAACCAAGTTCAGAGAGTATGTT 59.008 40.000 0.00 0.00 0.00 2.71
2125 3910 5.070446 TGTCAACCAAGTTCAGAGAGTATGT 59.930 40.000 0.00 0.00 0.00 2.29
2126 3911 5.541845 TGTCAACCAAGTTCAGAGAGTATG 58.458 41.667 0.00 0.00 0.00 2.39
2127 3912 5.808366 TGTCAACCAAGTTCAGAGAGTAT 57.192 39.130 0.00 0.00 0.00 2.12
2128 3913 5.607939 TTGTCAACCAAGTTCAGAGAGTA 57.392 39.130 0.00 0.00 0.00 2.59
2129 3914 4.487714 TTGTCAACCAAGTTCAGAGAGT 57.512 40.909 0.00 0.00 0.00 3.24
2130 3915 5.297776 ACATTTGTCAACCAAGTTCAGAGAG 59.702 40.000 0.00 0.00 33.75 3.20
2169 3954 8.302438 AGAGAAACATTTTCTTAATCAGCCAAG 58.698 33.333 2.79 0.00 0.00 3.61
2170 3955 8.181904 AGAGAAACATTTTCTTAATCAGCCAA 57.818 30.769 2.79 0.00 0.00 4.52
2172 3957 8.951243 AGTAGAGAAACATTTTCTTAATCAGCC 58.049 33.333 2.79 0.00 0.00 4.85
2217 4007 0.239347 CGACCAGCAAGAAAAGCCTG 59.761 55.000 0.00 0.00 0.00 4.85
2422 4220 1.499007 AGTTCTTGGGTGAATGGGTGT 59.501 47.619 0.00 0.00 0.00 4.16
2424 4222 1.823250 GCAGTTCTTGGGTGAATGGGT 60.823 52.381 0.00 0.00 0.00 4.51
2425 4223 0.890683 GCAGTTCTTGGGTGAATGGG 59.109 55.000 0.00 0.00 0.00 4.00
2426 4224 0.523072 CGCAGTTCTTGGGTGAATGG 59.477 55.000 0.00 0.00 35.17 3.16
2427 4225 0.523072 CCGCAGTTCTTGGGTGAATG 59.477 55.000 0.00 0.00 38.02 2.67
2429 4227 0.106918 AACCGCAGTTCTTGGGTGAA 60.107 50.000 0.00 0.00 38.02 3.18
2430 4228 0.759959 TAACCGCAGTTCTTGGGTGA 59.240 50.000 0.00 0.00 38.02 4.02
2431 4229 1.600023 TTAACCGCAGTTCTTGGGTG 58.400 50.000 0.00 0.00 38.02 4.61
2432 4230 2.579410 ATTAACCGCAGTTCTTGGGT 57.421 45.000 0.00 0.00 38.02 4.51
2434 4232 4.455877 AGAGAAATTAACCGCAGTTCTTGG 59.544 41.667 0.00 0.00 37.42 3.61
2435 4233 5.409826 AGAGAGAAATTAACCGCAGTTCTTG 59.590 40.000 0.00 0.00 37.42 3.02
2436 4234 5.552178 AGAGAGAAATTAACCGCAGTTCTT 58.448 37.500 0.00 0.00 37.42 2.52
2437 4235 5.153950 AGAGAGAAATTAACCGCAGTTCT 57.846 39.130 0.00 0.00 37.42 3.01
2438 4236 5.864628 AAGAGAGAAATTAACCGCAGTTC 57.135 39.130 0.00 0.00 37.42 3.01
2439 4237 6.039382 ACAAAAGAGAGAAATTAACCGCAGTT 59.961 34.615 0.00 0.00 40.15 3.16
2440 4238 5.531287 ACAAAAGAGAGAAATTAACCGCAGT 59.469 36.000 0.00 0.00 0.00 4.40
2441 4239 5.853282 CACAAAAGAGAGAAATTAACCGCAG 59.147 40.000 0.00 0.00 0.00 5.18
2442 4240 5.757886 CACAAAAGAGAGAAATTAACCGCA 58.242 37.500 0.00 0.00 0.00 5.69
2443 4241 4.617223 GCACAAAAGAGAGAAATTAACCGC 59.383 41.667 0.00 0.00 0.00 5.68
2444 4242 5.757886 TGCACAAAAGAGAGAAATTAACCG 58.242 37.500 0.00 0.00 0.00 4.44
2445 4243 7.359514 GCATTGCACAAAAGAGAGAAATTAACC 60.360 37.037 3.15 0.00 0.00 2.85
2447 4245 7.436118 AGCATTGCACAAAAGAGAGAAATTAA 58.564 30.769 11.91 0.00 0.00 1.40
2449 4247 5.850614 AGCATTGCACAAAAGAGAGAAATT 58.149 33.333 11.91 0.00 0.00 1.82
2450 4248 5.010314 TGAGCATTGCACAAAAGAGAGAAAT 59.990 36.000 11.91 0.00 0.00 2.17
2453 4251 3.479489 TGAGCATTGCACAAAAGAGAGA 58.521 40.909 11.91 0.00 0.00 3.10
2454 4252 3.909776 TGAGCATTGCACAAAAGAGAG 57.090 42.857 11.91 0.00 0.00 3.20
2455 4253 3.822167 TGATGAGCATTGCACAAAAGAGA 59.178 39.130 12.74 0.00 32.39 3.10
2456 4254 4.166523 CTGATGAGCATTGCACAAAAGAG 58.833 43.478 12.74 3.43 32.39 2.85
2459 4257 4.325028 AACTGATGAGCATTGCACAAAA 57.675 36.364 12.74 3.79 32.39 2.44
2460 4258 4.325028 AAACTGATGAGCATTGCACAAA 57.675 36.364 12.74 4.12 32.39 2.83
2462 4260 5.648178 AATAAACTGATGAGCATTGCACA 57.352 34.783 11.18 11.18 33.26 4.57
2463 4261 5.973565 GGTAATAAACTGATGAGCATTGCAC 59.026 40.000 11.91 5.15 0.00 4.57
2689 4495 2.431683 GCAAGAGACCCTGGCACA 59.568 61.111 0.00 0.00 41.61 4.57
2724 4530 2.283604 TAGCTGGACCGGAGCACA 60.284 61.111 9.46 0.00 39.05 4.57
2799 4608 0.459585 GTCTATCCAAGCACGCCGAA 60.460 55.000 0.00 0.00 0.00 4.30
2819 4628 0.528466 GAGCGCATCGGAGTCATTCA 60.528 55.000 11.47 0.00 0.00 2.57
2877 4686 1.081376 CGACGGCGATATCCTGGAC 60.081 63.158 16.62 0.00 40.82 4.02
2880 4689 1.210413 CTCCGACGGCGATATCCTG 59.790 63.158 15.16 0.00 40.82 3.86
2919 4728 2.982744 CTGAGAGTGGCACGAGCGA 61.983 63.158 12.71 0.00 43.41 4.93
3013 4822 9.730420 CTTTAGCAAGTTACTTTTACATTGTGT 57.270 29.630 0.00 0.00 0.00 3.72
3026 4835 9.922305 CATATTCTAACAGCTTTAGCAAGTTAC 57.078 33.333 12.67 0.00 45.16 2.50
3027 4836 9.884636 TCATATTCTAACAGCTTTAGCAAGTTA 57.115 29.630 14.69 14.69 45.16 2.24
3121 5054 5.069648 TGGAATCTTATACAGCTCCACAGAG 59.930 44.000 0.00 0.00 43.57 3.35
3122 5055 4.962362 TGGAATCTTATACAGCTCCACAGA 59.038 41.667 0.00 0.00 32.11 3.41
3135 5068 7.444703 AAGAAGCTTAGACCTGGAATCTTAT 57.555 36.000 0.00 0.00 0.00 1.73
3144 5077 6.998968 ATCATGAAAAGAAGCTTAGACCTG 57.001 37.500 0.00 0.00 0.00 4.00
3218 5152 4.139786 CAGCTACATTTGTGCCCAGATAT 58.860 43.478 0.00 0.00 0.00 1.63
3251 5185 2.610727 GGAGAGGTTGTTTGGAGTCTCG 60.611 54.545 0.00 0.00 32.79 4.04
3254 5188 1.343465 TCGGAGAGGTTGTTTGGAGTC 59.657 52.381 0.00 0.00 0.00 3.36
3359 5293 3.369147 CGCTTGTTGAAGAGAACGATGAT 59.631 43.478 0.00 0.00 30.95 2.45
3371 5305 2.360483 TGGAGAAATTGCGCTTGTTGAA 59.640 40.909 9.73 0.00 0.00 2.69
3497 5431 3.505680 TCTCAACCATTGTGTTGTATGGC 59.494 43.478 13.93 0.00 44.17 4.40
3542 5476 1.824852 TCAACATCTCTTAGCCTGCGA 59.175 47.619 0.00 0.00 0.00 5.10
3545 5479 4.344679 AGATCCTCAACATCTCTTAGCCTG 59.655 45.833 0.00 0.00 0.00 4.85
3593 5527 3.910989 TCACCGGAGAATAAGGATGAGA 58.089 45.455 9.46 0.00 0.00 3.27
3610 5544 7.325660 AGATACATTCACAATCACATTCACC 57.674 36.000 0.00 0.00 0.00 4.02
3621 5555 6.708502 TGGAAAGACGAAAGATACATTCACAA 59.291 34.615 0.00 0.00 0.00 3.33
3634 5568 7.504924 AATCAGTAACAATGGAAAGACGAAA 57.495 32.000 0.00 0.00 0.00 3.46
3673 5607 6.645415 CCGGTACAGTATCAACCTGAAATATC 59.355 42.308 0.00 0.00 34.04 1.63
3876 5813 1.269831 CCGTACCTGAGATAAGCCTGC 60.270 57.143 0.00 0.00 0.00 4.85
4054 5995 2.387445 CGTCCCGCGATTTTGCAGA 61.387 57.895 8.23 0.00 44.77 4.26
4121 6062 1.209504 CATACCTGTCCGGGACAATGT 59.790 52.381 28.44 27.01 42.26 2.71
4191 6132 5.414360 ACAGTGCTCATAATCAGTACAGTG 58.586 41.667 0.00 0.00 34.09 3.66
4195 6136 6.796426 TCAGTACAGTGCTCATAATCAGTAC 58.204 40.000 0.00 0.00 0.00 2.73
4196 6137 7.588497 ATCAGTACAGTGCTCATAATCAGTA 57.412 36.000 0.00 0.00 0.00 2.74
4197 6138 5.921962 TCAGTACAGTGCTCATAATCAGT 57.078 39.130 0.00 0.00 0.00 3.41
4198 6139 7.114106 CGTAATCAGTACAGTGCTCATAATCAG 59.886 40.741 0.00 0.00 32.45 2.90
4199 6140 6.918022 CGTAATCAGTACAGTGCTCATAATCA 59.082 38.462 0.00 0.00 32.45 2.57
4200 6141 6.363626 CCGTAATCAGTACAGTGCTCATAATC 59.636 42.308 0.00 0.00 32.45 1.75
4201 6142 6.216569 CCGTAATCAGTACAGTGCTCATAAT 58.783 40.000 0.00 0.00 32.45 1.28
4202 6143 5.451381 CCCGTAATCAGTACAGTGCTCATAA 60.451 44.000 0.00 0.00 32.45 1.90
4203 6144 4.037565 CCCGTAATCAGTACAGTGCTCATA 59.962 45.833 0.00 0.00 32.45 2.15
4204 6145 3.181475 CCCGTAATCAGTACAGTGCTCAT 60.181 47.826 0.00 0.00 32.45 2.90
4205 6146 2.165641 CCCGTAATCAGTACAGTGCTCA 59.834 50.000 0.00 0.00 32.45 4.26
4206 6147 2.810650 CCCGTAATCAGTACAGTGCTC 58.189 52.381 0.00 0.00 32.45 4.26
4207 6148 1.134788 GCCCGTAATCAGTACAGTGCT 60.135 52.381 0.00 0.00 32.45 4.40
4208 6149 1.287425 GCCCGTAATCAGTACAGTGC 58.713 55.000 0.00 0.00 32.45 4.40
4348 6290 3.430862 GGCTCCGATTGCGCAACA 61.431 61.111 27.64 4.03 35.83 3.33
4478 6420 3.545703 AGTATGGATTGGAGAAAAGGCG 58.454 45.455 0.00 0.00 0.00 5.52
4492 6435 3.622206 GCCAAGAACCACATGAGTATGGA 60.622 47.826 7.06 0.00 39.46 3.41
4552 6499 0.396435 ATTTCCTCAGGACACGTGCA 59.604 50.000 17.22 0.00 0.00 4.57
4588 6535 9.761504 TTCATAATCATGTTTTGACAATGTTGT 57.238 25.926 0.00 0.00 37.11 3.32
4705 6656 3.989787 GGGGCTTGTTTGGCACCG 61.990 66.667 0.00 0.00 43.71 4.94
4795 6763 1.749258 GTTGCCCGGATGAACTCCC 60.749 63.158 0.73 0.00 41.49 4.30
4942 6910 4.783621 GGCACCTCTGCATCGCCA 62.784 66.667 7.01 0.00 46.28 5.69
4971 6945 1.680522 ATGATCTTGCTCGACCGGCT 61.681 55.000 0.00 0.00 0.00 5.52
5065 7042 0.309922 CACAAGGTCAGCAGCACAAG 59.690 55.000 0.00 0.00 0.00 3.16
5066 7043 0.107263 TCACAAGGTCAGCAGCACAA 60.107 50.000 0.00 0.00 0.00 3.33
5067 7044 0.533531 CTCACAAGGTCAGCAGCACA 60.534 55.000 0.00 0.00 0.00 4.57
5068 7045 0.250038 TCTCACAAGGTCAGCAGCAC 60.250 55.000 0.00 0.00 0.00 4.40
5069 7046 0.689055 ATCTCACAAGGTCAGCAGCA 59.311 50.000 0.00 0.00 0.00 4.41
5070 7047 1.085091 CATCTCACAAGGTCAGCAGC 58.915 55.000 0.00 0.00 0.00 5.25
5071 7048 1.277273 TCCATCTCACAAGGTCAGCAG 59.723 52.381 0.00 0.00 0.00 4.24
5072 7049 1.002430 GTCCATCTCACAAGGTCAGCA 59.998 52.381 0.00 0.00 0.00 4.41
5073 7050 1.277557 AGTCCATCTCACAAGGTCAGC 59.722 52.381 0.00 0.00 0.00 4.26
5074 7051 2.564504 TCAGTCCATCTCACAAGGTCAG 59.435 50.000 0.00 0.00 0.00 3.51
5075 7052 2.300152 GTCAGTCCATCTCACAAGGTCA 59.700 50.000 0.00 0.00 0.00 4.02
5076 7053 2.354203 GGTCAGTCCATCTCACAAGGTC 60.354 54.545 0.00 0.00 35.97 3.85
5077 7054 1.625818 GGTCAGTCCATCTCACAAGGT 59.374 52.381 0.00 0.00 35.97 3.50
5078 7055 1.625315 TGGTCAGTCCATCTCACAAGG 59.375 52.381 0.00 0.00 41.93 3.61
5135 7118 0.040425 AACCAAAATGCACGACTCGC 60.040 50.000 0.00 0.00 0.00 5.03
5136 7119 1.662876 CCAACCAAAATGCACGACTCG 60.663 52.381 0.00 0.00 0.00 4.18
5141 7127 2.021039 CCGCCAACCAAAATGCACG 61.021 57.895 0.00 0.00 0.00 5.34
5145 7131 2.802787 TTACACCGCCAACCAAAATG 57.197 45.000 0.00 0.00 0.00 2.32
5250 7236 2.352323 CCGGCCCATGAAACAAAAGTAC 60.352 50.000 0.00 0.00 0.00 2.73
5251 7237 1.889829 CCGGCCCATGAAACAAAAGTA 59.110 47.619 0.00 0.00 0.00 2.24
5252 7238 0.678950 CCGGCCCATGAAACAAAAGT 59.321 50.000 0.00 0.00 0.00 2.66
5278 7264 0.605589 CAGACTCGCTCCAGAACCTT 59.394 55.000 0.00 0.00 0.00 3.50
5295 7282 6.857777 AGAATGCCGAGAAGAATAAATCAG 57.142 37.500 0.00 0.00 0.00 2.90
5298 7285 7.226325 CAGAGAAGAATGCCGAGAAGAATAAAT 59.774 37.037 0.00 0.00 0.00 1.40
5311 7298 1.742268 GCAGTTCCAGAGAAGAATGCC 59.258 52.381 0.00 0.00 33.85 4.40
5317 7304 1.275856 AGCTCAGCAGTTCCAGAGAAG 59.724 52.381 0.00 0.00 30.91 2.85
5318 7305 1.346062 AGCTCAGCAGTTCCAGAGAA 58.654 50.000 0.00 0.00 0.00 2.87
5340 7340 9.162764 GTACAAACTCCTTTTGATTATCTGCTA 57.837 33.333 3.81 0.00 46.76 3.49
5369 7369 6.263842 CACACCATCTACAAGCAATGGATTAT 59.736 38.462 7.57 0.00 42.13 1.28
5383 7394 2.170607 ACCAGTATGCCACACCATCTAC 59.829 50.000 0.00 0.00 31.97 2.59
5407 7446 8.984891 TCAAATCAAAGCATATTAACAACTGG 57.015 30.769 0.00 0.00 0.00 4.00
5416 7455 6.339730 TCCGCAAATCAAATCAAAGCATATT 58.660 32.000 0.00 0.00 0.00 1.28
5417 7456 5.904941 TCCGCAAATCAAATCAAAGCATAT 58.095 33.333 0.00 0.00 0.00 1.78
5421 7460 4.988708 TTTCCGCAAATCAAATCAAAGC 57.011 36.364 0.00 0.00 0.00 3.51
5422 7461 6.793203 CACAATTTCCGCAAATCAAATCAAAG 59.207 34.615 0.00 0.00 30.37 2.77
5427 7466 6.259608 TCAAACACAATTTCCGCAAATCAAAT 59.740 30.769 0.00 0.00 30.37 2.32
5442 7482 0.893727 GCCCGGGAGTCAAACACAAT 60.894 55.000 29.31 0.00 0.00 2.71
5452 7492 2.363795 TTCATCGAGCCCGGGAGT 60.364 61.111 29.31 10.93 36.24 3.85
5458 7498 0.107945 AACTGAGCTTCATCGAGCCC 60.108 55.000 0.00 0.00 43.74 5.19
5464 7504 9.683069 TTGAATCTTTTAAAACTGAGCTTCATC 57.317 29.630 0.00 0.00 28.25 2.92
5590 7630 2.323939 TTATTTTTGTGCACCTCGCG 57.676 45.000 15.69 0.00 46.97 5.87
5753 11692 2.431954 ATGCCTCTTTGCTATGCACT 57.568 45.000 0.00 0.00 38.71 4.40
5783 11723 9.244799 CCGCTTTACTTTTTCTTGTAAATCTTT 57.755 29.630 0.00 0.00 37.79 2.52
5792 11732 7.190871 TCACTTTACCGCTTTACTTTTTCTTG 58.809 34.615 0.00 0.00 0.00 3.02
5804 11744 4.820894 ATACCTCTTCACTTTACCGCTT 57.179 40.909 0.00 0.00 0.00 4.68
5807 11747 4.868734 GTCCAATACCTCTTCACTTTACCG 59.131 45.833 0.00 0.00 0.00 4.02
5809 11749 7.387643 AGAAGTCCAATACCTCTTCACTTTAC 58.612 38.462 0.00 0.00 38.78 2.01
5812 11752 5.544176 TGAGAAGTCCAATACCTCTTCACTT 59.456 40.000 0.00 0.00 38.78 3.16
5821 11761 8.630037 TCTTTTTCTTTTGAGAAGTCCAATACC 58.370 33.333 0.00 0.00 0.00 2.73
5872 11816 4.347000 CCCCTCGTTCCATAGGAATTCTAA 59.653 45.833 5.23 0.00 44.04 2.10
5873 11817 3.901844 CCCCTCGTTCCATAGGAATTCTA 59.098 47.826 5.23 0.00 44.04 2.10
5874 11818 2.706190 CCCCTCGTTCCATAGGAATTCT 59.294 50.000 5.23 0.00 44.04 2.40
5883 11827 0.399949 TCCTATGCCCCTCGTTCCAT 60.400 55.000 0.00 0.00 0.00 3.41
5904 11848 5.242171 GGGTCCCAAATTAATATGTAACCCG 59.758 44.000 1.78 0.00 32.82 5.28
5940 11884 3.967332 AATCTGTGAAAGCCATTTGGG 57.033 42.857 0.00 0.00 40.85 4.12
5943 11887 5.308014 GGGAAAAATCTGTGAAAGCCATTT 58.692 37.500 0.00 0.00 0.00 2.32
5946 11890 2.632512 GGGGAAAAATCTGTGAAAGCCA 59.367 45.455 0.00 0.00 0.00 4.75
5957 11901 5.190677 TCTGAATCTTACGGGGGAAAAATC 58.809 41.667 0.00 0.00 0.00 2.17
5960 11904 4.384868 GGATCTGAATCTTACGGGGGAAAA 60.385 45.833 0.00 0.00 32.12 2.29
5964 11908 2.330216 AGGATCTGAATCTTACGGGGG 58.670 52.381 0.00 0.00 32.12 5.40
5965 11909 5.546621 TTTAGGATCTGAATCTTACGGGG 57.453 43.478 0.00 0.00 32.12 5.73
5993 11937 8.796475 CCTCTGGATTGAAGAATTTTTGTTAGA 58.204 33.333 0.00 0.00 0.00 2.10
5998 11942 4.860907 CGCCTCTGGATTGAAGAATTTTTG 59.139 41.667 0.00 0.00 0.00 2.44
6005 11949 0.176680 GAGCGCCTCTGGATTGAAGA 59.823 55.000 2.29 0.00 0.00 2.87
6014 11958 0.176680 ACCATACAAGAGCGCCTCTG 59.823 55.000 2.29 0.34 40.28 3.35
6019 11963 1.933853 CTACCAACCATACAAGAGCGC 59.066 52.381 0.00 0.00 0.00 5.92
6020 11964 2.167693 TCCTACCAACCATACAAGAGCG 59.832 50.000 0.00 0.00 0.00 5.03
6029 11973 0.035439 CCACGCTTCCTACCAACCAT 60.035 55.000 0.00 0.00 0.00 3.55
6030 11974 1.373435 CCACGCTTCCTACCAACCA 59.627 57.895 0.00 0.00 0.00 3.67
6031 11975 2.038837 GCCACGCTTCCTACCAACC 61.039 63.158 0.00 0.00 0.00 3.77
6032 11976 1.003718 AGCCACGCTTCCTACCAAC 60.004 57.895 0.00 0.00 33.89 3.77
6033 11977 1.295423 GAGCCACGCTTCCTACCAA 59.705 57.895 0.00 0.00 39.88 3.67
6034 11978 2.978824 GAGCCACGCTTCCTACCA 59.021 61.111 0.00 0.00 39.88 3.25
6035 11979 2.202756 CGAGCCACGCTTCCTACC 60.203 66.667 0.00 0.00 39.88 3.18
6036 11980 1.226717 CTCGAGCCACGCTTCCTAC 60.227 63.158 0.00 0.00 39.88 3.18
6037 11981 3.064987 GCTCGAGCCACGCTTCCTA 62.065 63.158 27.22 0.00 39.88 2.94
6038 11982 4.443266 GCTCGAGCCACGCTTCCT 62.443 66.667 27.22 0.00 39.88 3.36
6039 11983 4.742201 TGCTCGAGCCACGCTTCC 62.742 66.667 33.23 4.42 39.88 3.46
6040 11984 3.184683 CTGCTCGAGCCACGCTTC 61.185 66.667 33.23 5.19 39.88 3.86
6052 11996 0.529555 GTGAGAATCCCGAGCTGCTC 60.530 60.000 19.53 19.53 0.00 4.26
6053 11997 1.260538 TGTGAGAATCCCGAGCTGCT 61.261 55.000 0.00 0.00 0.00 4.24
6054 11998 0.179062 ATGTGAGAATCCCGAGCTGC 60.179 55.000 0.00 0.00 0.00 5.25
6055 11999 1.579698 CATGTGAGAATCCCGAGCTG 58.420 55.000 0.00 0.00 0.00 4.24
6056 12000 0.179062 GCATGTGAGAATCCCGAGCT 60.179 55.000 0.00 0.00 0.00 4.09
6057 12001 0.462581 TGCATGTGAGAATCCCGAGC 60.463 55.000 0.00 0.00 0.00 5.03
6058 12002 1.579698 CTGCATGTGAGAATCCCGAG 58.420 55.000 0.00 0.00 0.00 4.63
6059 12003 0.178767 CCTGCATGTGAGAATCCCGA 59.821 55.000 0.00 0.00 0.00 5.14
6060 12004 0.816825 CCCTGCATGTGAGAATCCCG 60.817 60.000 0.00 0.00 0.00 5.14
6061 12005 0.466922 CCCCTGCATGTGAGAATCCC 60.467 60.000 0.00 0.00 0.00 3.85
6062 12006 1.105759 GCCCCTGCATGTGAGAATCC 61.106 60.000 0.00 0.00 37.47 3.01
6063 12007 1.442526 CGCCCCTGCATGTGAGAATC 61.443 60.000 0.00 0.00 37.32 2.52
6064 12008 1.452651 CGCCCCTGCATGTGAGAAT 60.453 57.895 0.00 0.00 37.32 2.40
6065 12009 2.046023 CGCCCCTGCATGTGAGAA 60.046 61.111 0.00 0.00 37.32 2.87
6066 12010 4.100084 CCGCCCCTGCATGTGAGA 62.100 66.667 0.00 0.00 37.32 3.27
6067 12011 3.411114 ATCCGCCCCTGCATGTGAG 62.411 63.158 0.00 0.00 37.32 3.51
6068 12012 3.405093 GATCCGCCCCTGCATGTGA 62.405 63.158 0.00 0.00 37.32 3.58
6069 12013 2.903855 GATCCGCCCCTGCATGTG 60.904 66.667 0.00 0.00 37.32 3.21
6070 12014 4.195334 GGATCCGCCCCTGCATGT 62.195 66.667 0.00 0.00 37.32 3.21
6071 12015 4.193893 TGGATCCGCCCCTGCATG 62.194 66.667 7.39 0.00 37.32 4.06
6072 12016 3.882326 CTGGATCCGCCCCTGCAT 61.882 66.667 7.39 0.00 37.32 3.96
6075 12019 0.904865 TATAGCTGGATCCGCCCCTG 60.905 60.000 20.30 3.41 34.97 4.45
6076 12020 0.043334 ATATAGCTGGATCCGCCCCT 59.957 55.000 20.30 10.58 34.97 4.79
6077 12021 0.179000 CATATAGCTGGATCCGCCCC 59.821 60.000 20.30 4.24 34.97 5.80
6078 12022 0.179000 CCATATAGCTGGATCCGCCC 59.821 60.000 20.30 6.50 38.69 6.13
6079 12023 0.462759 GCCATATAGCTGGATCCGCC 60.463 60.000 20.30 8.79 38.69 6.13
6080 12024 0.807667 CGCCATATAGCTGGATCCGC 60.808 60.000 17.46 17.46 38.69 5.54
6081 12025 0.817654 TCGCCATATAGCTGGATCCG 59.182 55.000 7.39 3.14 38.69 4.18
6082 12026 1.137872 CCTCGCCATATAGCTGGATCC 59.862 57.143 4.20 4.20 38.69 3.36
6083 12027 1.827969 ACCTCGCCATATAGCTGGATC 59.172 52.381 0.00 0.00 38.69 3.36
6084 12028 1.944177 ACCTCGCCATATAGCTGGAT 58.056 50.000 0.00 0.00 38.69 3.41
6085 12029 1.717032 AACCTCGCCATATAGCTGGA 58.283 50.000 0.00 0.00 38.69 3.86
6086 12030 2.146342 CAAACCTCGCCATATAGCTGG 58.854 52.381 0.00 0.00 39.45 4.85
6087 12031 2.146342 CCAAACCTCGCCATATAGCTG 58.854 52.381 0.00 0.00 0.00 4.24
6088 12032 1.543429 GCCAAACCTCGCCATATAGCT 60.543 52.381 0.00 0.00 0.00 3.32
6089 12033 0.875059 GCCAAACCTCGCCATATAGC 59.125 55.000 0.00 0.00 0.00 2.97
6090 12034 2.146342 CTGCCAAACCTCGCCATATAG 58.854 52.381 0.00 0.00 0.00 1.31
6091 12035 1.813862 GCTGCCAAACCTCGCCATATA 60.814 52.381 0.00 0.00 0.00 0.86
6092 12036 1.103398 GCTGCCAAACCTCGCCATAT 61.103 55.000 0.00 0.00 0.00 1.78
6093 12037 1.748879 GCTGCCAAACCTCGCCATA 60.749 57.895 0.00 0.00 0.00 2.74
6094 12038 3.064324 GCTGCCAAACCTCGCCAT 61.064 61.111 0.00 0.00 0.00 4.40
6107 12051 1.318576 ATTTTAGGTATGGCGGCTGC 58.681 50.000 9.72 9.72 41.71 5.25
6108 12052 3.490761 CCAAATTTTAGGTATGGCGGCTG 60.491 47.826 11.43 0.00 0.00 4.85
6109 12053 2.693074 CCAAATTTTAGGTATGGCGGCT 59.307 45.455 11.43 0.00 0.00 5.52
6110 12054 2.801699 GCCAAATTTTAGGTATGGCGGC 60.802 50.000 0.00 0.00 46.11 6.53
6111 12055 3.092334 GCCAAATTTTAGGTATGGCGG 57.908 47.619 0.00 0.00 46.11 6.13
6114 12058 9.665719 AATACTTTTGCCAAATTTTAGGTATGG 57.334 29.630 0.00 0.00 0.00 2.74
6116 12060 9.161629 GCAATACTTTTGCCAAATTTTAGGTAT 57.838 29.630 0.00 0.00 39.38 2.73
6117 12061 8.150945 TGCAATACTTTTGCCAAATTTTAGGTA 58.849 29.630 7.76 0.00 44.32 3.08
6118 12062 6.995091 TGCAATACTTTTGCCAAATTTTAGGT 59.005 30.769 7.76 0.00 44.32 3.08
6119 12063 7.432350 TGCAATACTTTTGCCAAATTTTAGG 57.568 32.000 7.76 0.00 44.32 2.69
6147 12091 9.429359 GCTCAAAGCTTCATACATACAGTATAT 57.571 33.333 0.00 0.00 38.63 0.86
6148 12092 8.818141 GCTCAAAGCTTCATACATACAGTATA 57.182 34.615 0.00 0.00 38.63 1.47
6149 12093 7.721286 GCTCAAAGCTTCATACATACAGTAT 57.279 36.000 0.00 0.00 40.07 2.12
6165 12109 2.430465 TCCATTGACTCAGCTCAAAGC 58.570 47.619 0.00 0.00 42.84 3.51
6166 12110 5.640189 AAATCCATTGACTCAGCTCAAAG 57.360 39.130 0.00 0.00 33.85 2.77
6167 12111 6.218019 CAAAAATCCATTGACTCAGCTCAAA 58.782 36.000 0.00 0.00 33.85 2.69
6168 12112 5.279106 CCAAAAATCCATTGACTCAGCTCAA 60.279 40.000 0.00 0.00 34.65 3.02
6169 12113 4.219070 CCAAAAATCCATTGACTCAGCTCA 59.781 41.667 0.00 0.00 0.00 4.26
6170 12114 4.219288 ACCAAAAATCCATTGACTCAGCTC 59.781 41.667 0.00 0.00 0.00 4.09
6171 12115 4.154942 ACCAAAAATCCATTGACTCAGCT 58.845 39.130 0.00 0.00 0.00 4.24
6172 12116 4.022068 TGACCAAAAATCCATTGACTCAGC 60.022 41.667 0.00 0.00 0.00 4.26
6173 12117 5.242393 ACTGACCAAAAATCCATTGACTCAG 59.758 40.000 10.09 10.09 37.83 3.35
6174 12118 5.139727 ACTGACCAAAAATCCATTGACTCA 58.860 37.500 0.00 0.00 0.00 3.41
6175 12119 5.712152 ACTGACCAAAAATCCATTGACTC 57.288 39.130 0.00 0.00 0.00 3.36
6176 12120 6.484364 AAACTGACCAAAAATCCATTGACT 57.516 33.333 0.00 0.00 0.00 3.41
6177 12121 5.402270 CGAAACTGACCAAAAATCCATTGAC 59.598 40.000 0.00 0.00 0.00 3.18
6178 12122 5.068460 ACGAAACTGACCAAAAATCCATTGA 59.932 36.000 0.00 0.00 0.00 2.57
6179 12123 5.288804 ACGAAACTGACCAAAAATCCATTG 58.711 37.500 0.00 0.00 0.00 2.82
6180 12124 5.068460 TGACGAAACTGACCAAAAATCCATT 59.932 36.000 0.00 0.00 0.00 3.16
6181 12125 4.582656 TGACGAAACTGACCAAAAATCCAT 59.417 37.500 0.00 0.00 0.00 3.41
6182 12126 3.948473 TGACGAAACTGACCAAAAATCCA 59.052 39.130 0.00 0.00 0.00 3.41
6183 12127 4.561735 TGACGAAACTGACCAAAAATCC 57.438 40.909 0.00 0.00 0.00 3.01
6184 12128 7.336975 CAAATTGACGAAACTGACCAAAAATC 58.663 34.615 0.00 0.00 0.00 2.17
6185 12129 7.232945 CAAATTGACGAAACTGACCAAAAAT 57.767 32.000 0.00 0.00 0.00 1.82
6186 12130 6.639671 CAAATTGACGAAACTGACCAAAAA 57.360 33.333 0.00 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.