Multiple sequence alignment - TraesCS5A01G404100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G404100 chr5A 100.000 2703 0 0 1 2703 596053768 596056470 0.000000e+00 4992.0
1 TraesCS5A01G404100 chr5A 87.006 962 88 15 878 1824 596086538 596087477 0.000000e+00 1050.0
2 TraesCS5A01G404100 chr5A 83.612 958 111 25 878 1792 596032334 596033288 0.000000e+00 857.0
3 TraesCS5A01G404100 chr5A 82.903 930 110 28 878 1796 596044253 596045144 0.000000e+00 791.0
4 TraesCS5A01G404100 chr5A 86.979 384 33 8 481 859 596082384 596082013 1.500000e-112 416.0
5 TraesCS5A01G404100 chr5A 84.035 451 36 20 432 862 596041792 596041358 4.190000e-108 401.0
6 TraesCS5A01G404100 chr5A 94.979 239 9 1 1 239 637058168 637058403 3.290000e-99 372.0
7 TraesCS5A01G404100 chr5A 95.319 235 8 1 1 235 383894593 383894824 1.180000e-98 370.0
8 TraesCS5A01G404100 chr5D 84.301 1911 176 59 878 2697 476749576 476751453 0.000000e+00 1753.0
9 TraesCS5A01G404100 chr5D 85.622 1078 101 31 878 1931 476784825 476785872 0.000000e+00 1083.0
10 TraesCS5A01G404100 chr5D 86.233 937 97 15 878 1792 476708284 476709210 0.000000e+00 987.0
11 TraesCS5A01G404100 chr5D 86.266 932 87 17 883 1796 476724986 476725894 0.000000e+00 974.0
12 TraesCS5A01G404100 chr5D 89.572 537 26 12 366 878 476732586 476732056 0.000000e+00 654.0
13 TraesCS5A01G404100 chr5D 86.563 387 31 8 483 859 476782532 476782157 9.010000e-110 407.0
14 TraesCS5A01G404100 chr5D 83.550 462 44 17 417 862 476722726 476722281 1.170000e-108 403.0
15 TraesCS5A01G404100 chr5D 85.000 220 12 5 644 862 476717765 476717566 1.270000e-48 204.0
16 TraesCS5A01G404100 chr5D 95.181 83 4 0 758 840 476705758 476705676 6.070000e-27 132.0
17 TraesCS5A01G404100 chr5D 100.000 28 0 0 378 405 476782905 476782878 5.000000e-03 52.8
18 TraesCS5A01G404100 chr5B 82.409 1893 199 70 878 2702 584291797 584293623 0.000000e+00 1528.0
19 TraesCS5A01G404100 chr5B 88.004 1017 60 12 878 1855 584245516 584246509 0.000000e+00 1146.0
20 TraesCS5A01G404100 chr5B 85.022 928 110 21 888 1792 584126562 584127483 0.000000e+00 917.0
21 TraesCS5A01G404100 chr5B 85.897 858 78 16 883 1727 584142353 584143180 0.000000e+00 874.0
22 TraesCS5A01G404100 chr5B 88.046 527 31 11 371 878 584178986 584178473 1.790000e-166 595.0
23 TraesCS5A01G404100 chr5B 85.455 385 39 5 481 859 584290850 584290477 4.220000e-103 385.0
24 TraesCS5A01G404100 chr5B 84.040 401 59 4 2303 2702 584252856 584253252 5.460000e-102 381.0
25 TraesCS5A01G404100 chr5B 92.381 105 5 1 758 859 584121854 584121750 2.170000e-31 147.0
26 TraesCS5A01G404100 chr3B 95.781 237 7 1 1 237 17350340 17350573 1.960000e-101 379.0
27 TraesCS5A01G404100 chr3B 95.359 237 8 1 1 237 58625695 58625928 9.140000e-100 374.0
28 TraesCS5A01G404100 chr1A 95.417 240 8 1 1 240 41902491 41902255 1.960000e-101 379.0
29 TraesCS5A01G404100 chr1A 88.983 118 10 3 234 349 303585287 303585403 2.810000e-30 143.0
30 TraesCS5A01G404100 chr6A 95.359 237 8 1 2 238 922168 922401 9.140000e-100 374.0
31 TraesCS5A01G404100 chr1B 94.606 241 10 1 1 241 687414997 687415234 1.180000e-98 370.0
32 TraesCS5A01G404100 chr1B 92.308 65 5 0 2441 2505 685185392 685185328 2.870000e-15 93.5
33 TraesCS5A01G404100 chr6B 92.857 252 13 3 1 252 689209693 689209447 7.110000e-96 361.0
34 TraesCS5A01G404100 chr2A 89.860 286 22 6 2 284 694822359 694822640 7.110000e-96 361.0
35 TraesCS5A01G404100 chr2A 91.892 111 7 2 234 342 733094818 733094928 1.300000e-33 154.0
36 TraesCS5A01G404100 chr2A 88.889 117 11 2 234 348 193750629 193750745 2.810000e-30 143.0
37 TraesCS5A01G404100 chr7A 92.593 108 6 2 234 339 50001567 50001674 1.300000e-33 154.0
38 TraesCS5A01G404100 chr7A 91.818 110 7 2 234 341 168995666 168995775 4.660000e-33 152.0
39 TraesCS5A01G404100 chr7A 90.265 113 9 2 234 344 95809836 95809724 2.170000e-31 147.0
40 TraesCS5A01G404100 chr1D 89.744 117 9 3 234 347 482913813 482913929 2.170000e-31 147.0
41 TraesCS5A01G404100 chr3A 88.889 117 11 2 234 348 389261354 389261238 2.810000e-30 143.0
42 TraesCS5A01G404100 chr2B 88.430 121 10 4 234 352 7834318 7834436 2.810000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G404100 chr5A 596053768 596056470 2702 False 4992.0 4992 100.0000 1 2703 1 chr5A.!!$F4 2702
1 TraesCS5A01G404100 chr5A 596086538 596087477 939 False 1050.0 1050 87.0060 878 1824 1 chr5A.!!$F5 946
2 TraesCS5A01G404100 chr5A 596032334 596033288 954 False 857.0 857 83.6120 878 1792 1 chr5A.!!$F2 914
3 TraesCS5A01G404100 chr5A 596044253 596045144 891 False 791.0 791 82.9030 878 1796 1 chr5A.!!$F3 918
4 TraesCS5A01G404100 chr5D 476749576 476751453 1877 False 1753.0 1753 84.3010 878 2697 1 chr5D.!!$F3 1819
5 TraesCS5A01G404100 chr5D 476784825 476785872 1047 False 1083.0 1083 85.6220 878 1931 1 chr5D.!!$F4 1053
6 TraesCS5A01G404100 chr5D 476708284 476709210 926 False 987.0 987 86.2330 878 1792 1 chr5D.!!$F1 914
7 TraesCS5A01G404100 chr5D 476724986 476725894 908 False 974.0 974 86.2660 883 1796 1 chr5D.!!$F2 913
8 TraesCS5A01G404100 chr5D 476732056 476732586 530 True 654.0 654 89.5720 366 878 1 chr5D.!!$R4 512
9 TraesCS5A01G404100 chr5D 476782157 476782905 748 True 229.9 407 93.2815 378 859 2 chr5D.!!$R5 481
10 TraesCS5A01G404100 chr5B 584291797 584293623 1826 False 1528.0 1528 82.4090 878 2702 1 chr5B.!!$F5 1824
11 TraesCS5A01G404100 chr5B 584245516 584246509 993 False 1146.0 1146 88.0040 878 1855 1 chr5B.!!$F3 977
12 TraesCS5A01G404100 chr5B 584126562 584127483 921 False 917.0 917 85.0220 888 1792 1 chr5B.!!$F1 904
13 TraesCS5A01G404100 chr5B 584142353 584143180 827 False 874.0 874 85.8970 883 1727 1 chr5B.!!$F2 844
14 TraesCS5A01G404100 chr5B 584178473 584178986 513 True 595.0 595 88.0460 371 878 1 chr5B.!!$R2 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
374 375 0.257328 TCGGCCAGAGAGAGTCATCT 59.743 55.0 2.24 0.0 38.98 2.9 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1763 2216 0.03213 GATCTAACATCAGCGGCCGA 59.968 55.0 33.48 8.89 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.980481 CTATAAGTCCCATCTAAACCAAACAT 57.020 34.615 0.00 0.00 0.00 2.71
26 27 5.982890 AAGTCCCATCTAAACCAAACATG 57.017 39.130 0.00 0.00 0.00 3.21
27 28 5.255397 AGTCCCATCTAAACCAAACATGA 57.745 39.130 0.00 0.00 0.00 3.07
28 29 5.256474 AGTCCCATCTAAACCAAACATGAG 58.744 41.667 0.00 0.00 0.00 2.90
29 30 5.014123 AGTCCCATCTAAACCAAACATGAGA 59.986 40.000 0.00 0.00 0.00 3.27
30 31 5.355350 GTCCCATCTAAACCAAACATGAGAG 59.645 44.000 0.00 0.00 0.00 3.20
31 32 5.250543 TCCCATCTAAACCAAACATGAGAGA 59.749 40.000 0.00 0.00 0.00 3.10
32 33 5.355350 CCCATCTAAACCAAACATGAGAGAC 59.645 44.000 0.00 0.00 0.00 3.36
33 34 6.176183 CCATCTAAACCAAACATGAGAGACT 58.824 40.000 0.00 0.00 0.00 3.24
34 35 6.656693 CCATCTAAACCAAACATGAGAGACTT 59.343 38.462 0.00 0.00 0.00 3.01
35 36 7.824289 CCATCTAAACCAAACATGAGAGACTTA 59.176 37.037 0.00 0.00 0.00 2.24
36 37 9.388506 CATCTAAACCAAACATGAGAGACTTAT 57.611 33.333 0.00 0.00 0.00 1.73
39 40 9.319143 CTAAACCAAACATGAGAGACTTATAGG 57.681 37.037 0.00 0.00 0.00 2.57
40 41 6.240549 ACCAAACATGAGAGACTTATAGGG 57.759 41.667 0.00 0.00 0.00 3.53
41 42 5.964477 ACCAAACATGAGAGACTTATAGGGA 59.036 40.000 0.00 0.00 0.00 4.20
42 43 6.127026 ACCAAACATGAGAGACTTATAGGGAC 60.127 42.308 0.00 0.00 0.00 4.46
43 44 6.098982 CCAAACATGAGAGACTTATAGGGACT 59.901 42.308 0.00 0.00 46.37 3.85
44 45 7.365117 CCAAACATGAGAGACTTATAGGGACTT 60.365 40.741 0.00 0.00 41.75 3.01
45 46 8.696374 CAAACATGAGAGACTTATAGGGACTTA 58.304 37.037 0.00 0.00 41.75 2.24
46 47 8.840200 AACATGAGAGACTTATAGGGACTTAA 57.160 34.615 0.00 0.00 41.75 1.85
47 48 8.840200 ACATGAGAGACTTATAGGGACTTAAA 57.160 34.615 0.00 0.00 41.75 1.52
48 49 8.919145 ACATGAGAGACTTATAGGGACTTAAAG 58.081 37.037 0.00 0.00 41.75 1.85
49 50 8.919145 CATGAGAGACTTATAGGGACTTAAAGT 58.081 37.037 0.00 0.00 42.31 2.66
50 51 8.294954 TGAGAGACTTATAGGGACTTAAAGTG 57.705 38.462 0.00 0.00 40.60 3.16
51 52 7.342284 TGAGAGACTTATAGGGACTTAAAGTGG 59.658 40.741 0.00 0.00 40.60 4.00
52 53 6.612049 AGAGACTTATAGGGACTTAAAGTGGG 59.388 42.308 0.00 0.00 40.60 4.61
53 54 5.130643 AGACTTATAGGGACTTAAAGTGGGC 59.869 44.000 0.00 0.00 40.60 5.36
54 55 4.786454 ACTTATAGGGACTTAAAGTGGGCA 59.214 41.667 0.00 0.00 39.58 5.36
55 56 5.432060 ACTTATAGGGACTTAAAGTGGGCAT 59.568 40.000 0.00 0.00 39.58 4.40
56 57 4.881157 ATAGGGACTTAAAGTGGGCATT 57.119 40.909 0.00 0.00 41.75 3.56
57 58 3.542969 AGGGACTTAAAGTGGGCATTT 57.457 42.857 0.00 0.00 27.25 2.32
58 59 3.165071 AGGGACTTAAAGTGGGCATTTG 58.835 45.455 0.00 0.00 27.25 2.32
59 60 2.233676 GGGACTTAAAGTGGGCATTTGG 59.766 50.000 0.00 0.00 0.00 3.28
60 61 2.233676 GGACTTAAAGTGGGCATTTGGG 59.766 50.000 0.00 0.00 0.00 4.12
61 62 3.161866 GACTTAAAGTGGGCATTTGGGA 58.838 45.455 0.00 0.00 0.00 4.37
62 63 2.897326 ACTTAAAGTGGGCATTTGGGAC 59.103 45.455 0.00 0.00 0.00 4.46
63 64 2.990740 TAAAGTGGGCATTTGGGACT 57.009 45.000 0.00 0.00 0.00 3.85
64 65 2.101640 AAAGTGGGCATTTGGGACTT 57.898 45.000 0.00 0.00 0.00 3.01
65 66 2.990740 AAGTGGGCATTTGGGACTTA 57.009 45.000 0.00 0.00 0.00 2.24
66 67 3.473113 AAGTGGGCATTTGGGACTTAT 57.527 42.857 0.00 0.00 0.00 1.73
67 68 2.738743 AGTGGGCATTTGGGACTTATG 58.261 47.619 0.00 0.00 0.00 1.90
68 69 2.311542 AGTGGGCATTTGGGACTTATGA 59.688 45.455 0.00 0.00 0.00 2.15
69 70 3.096092 GTGGGCATTTGGGACTTATGAA 58.904 45.455 0.00 0.00 0.00 2.57
70 71 3.513515 GTGGGCATTTGGGACTTATGAAA 59.486 43.478 0.00 0.00 0.00 2.69
71 72 4.162131 GTGGGCATTTGGGACTTATGAAAT 59.838 41.667 0.00 0.00 0.00 2.17
72 73 5.362430 GTGGGCATTTGGGACTTATGAAATA 59.638 40.000 0.00 0.00 0.00 1.40
73 74 5.960811 TGGGCATTTGGGACTTATGAAATAA 59.039 36.000 0.00 0.00 36.20 1.40
88 89 5.683876 TGAAATAAGACTCTCAAGGAGGG 57.316 43.478 0.00 0.00 45.83 4.30
89 90 5.342017 TGAAATAAGACTCTCAAGGAGGGA 58.658 41.667 0.00 0.00 45.83 4.20
90 91 5.187967 TGAAATAAGACTCTCAAGGAGGGAC 59.812 44.000 0.00 0.00 45.83 4.46
91 92 4.618378 ATAAGACTCTCAAGGAGGGACT 57.382 45.455 0.00 0.00 45.83 3.85
92 93 3.268034 AAGACTCTCAAGGAGGGACTT 57.732 47.619 5.25 5.25 45.83 3.01
93 94 4.405756 AAGACTCTCAAGGAGGGACTTA 57.594 45.455 8.68 0.00 41.64 2.24
94 95 4.618378 AGACTCTCAAGGAGGGACTTAT 57.382 45.455 0.00 0.00 45.83 1.73
95 96 5.735733 AGACTCTCAAGGAGGGACTTATA 57.264 43.478 0.00 0.00 45.83 0.98
96 97 6.288096 AGACTCTCAAGGAGGGACTTATAT 57.712 41.667 0.00 0.00 45.83 0.86
97 98 6.074648 AGACTCTCAAGGAGGGACTTATATG 58.925 44.000 0.00 0.00 45.83 1.78
98 99 5.151454 ACTCTCAAGGAGGGACTTATATGG 58.849 45.833 0.00 0.00 45.83 2.74
99 100 5.103043 ACTCTCAAGGAGGGACTTATATGGA 60.103 44.000 0.00 0.00 45.83 3.41
100 101 5.148502 TCTCAAGGAGGGACTTATATGGAC 58.851 45.833 0.00 0.00 41.55 4.02
101 102 5.103043 TCTCAAGGAGGGACTTATATGGACT 60.103 44.000 0.00 0.00 41.55 3.85
102 103 5.538877 TCAAGGAGGGACTTATATGGACTT 58.461 41.667 0.00 0.00 41.55 3.01
103 104 6.689561 TCAAGGAGGGACTTATATGGACTTA 58.310 40.000 0.00 0.00 41.55 2.24
104 105 7.313731 TCAAGGAGGGACTTATATGGACTTAT 58.686 38.462 0.00 0.00 41.55 1.73
105 106 8.461854 TCAAGGAGGGACTTATATGGACTTATA 58.538 37.037 0.00 0.00 41.55 0.98
106 107 8.754080 CAAGGAGGGACTTATATGGACTTATAG 58.246 40.741 0.00 0.00 41.55 1.31
107 108 8.013806 AGGAGGGACTTATATGGACTTATAGT 57.986 38.462 0.00 0.00 41.55 2.12
108 109 8.465971 AGGAGGGACTTATATGGACTTATAGTT 58.534 37.037 0.00 0.00 41.55 2.24
109 110 8.532819 GGAGGGACTTATATGGACTTATAGTTG 58.467 40.741 0.00 0.00 41.55 3.16
110 111 9.091220 GAGGGACTTATATGGACTTATAGTTGT 57.909 37.037 0.00 0.00 41.55 3.32
152 153 7.563724 ACTTATAAGTCCTAGGAACCAAACA 57.436 36.000 14.65 0.00 32.86 2.83
153 154 7.621796 ACTTATAAGTCCTAGGAACCAAACAG 58.378 38.462 14.65 7.21 32.86 3.16
154 155 3.790089 AAGTCCTAGGAACCAAACAGG 57.210 47.619 14.65 0.00 45.67 4.00
164 165 3.527434 CCAAACAGGTAGGGACGAC 57.473 57.895 0.00 0.00 0.00 4.34
165 166 0.974383 CCAAACAGGTAGGGACGACT 59.026 55.000 0.00 0.00 33.44 4.18
166 167 1.346722 CCAAACAGGTAGGGACGACTT 59.653 52.381 0.00 0.00 33.44 3.01
167 168 2.224450 CCAAACAGGTAGGGACGACTTT 60.224 50.000 0.00 0.00 33.44 2.66
168 169 3.473625 CAAACAGGTAGGGACGACTTTT 58.526 45.455 0.00 0.00 33.44 2.27
169 170 3.851458 AACAGGTAGGGACGACTTTTT 57.149 42.857 0.00 0.00 33.44 1.94
170 171 4.961438 AACAGGTAGGGACGACTTTTTA 57.039 40.909 0.00 0.00 33.44 1.52
171 172 4.532314 ACAGGTAGGGACGACTTTTTAG 57.468 45.455 0.00 0.00 33.44 1.85
172 173 3.260128 ACAGGTAGGGACGACTTTTTAGG 59.740 47.826 0.00 0.00 33.44 2.69
173 174 2.836372 AGGTAGGGACGACTTTTTAGGG 59.164 50.000 0.00 0.00 33.44 3.53
174 175 2.833943 GGTAGGGACGACTTTTTAGGGA 59.166 50.000 0.00 0.00 33.44 4.20
175 176 3.368843 GGTAGGGACGACTTTTTAGGGAC 60.369 52.174 0.00 0.00 33.44 4.46
176 177 2.617658 AGGGACGACTTTTTAGGGACT 58.382 47.619 0.00 0.00 46.37 3.85
177 178 2.977580 AGGGACGACTTTTTAGGGACTT 59.022 45.455 0.00 0.00 41.75 3.01
178 179 3.072211 GGGACGACTTTTTAGGGACTTG 58.928 50.000 0.00 0.00 41.75 3.16
179 180 3.072211 GGACGACTTTTTAGGGACTTGG 58.928 50.000 0.00 0.00 41.75 3.61
180 181 3.072211 GACGACTTTTTAGGGACTTGGG 58.928 50.000 0.00 0.00 41.75 4.12
181 182 2.707257 ACGACTTTTTAGGGACTTGGGA 59.293 45.455 0.00 0.00 41.75 4.37
182 183 3.072211 CGACTTTTTAGGGACTTGGGAC 58.928 50.000 0.00 0.00 41.75 4.46
183 184 3.244457 CGACTTTTTAGGGACTTGGGACT 60.244 47.826 0.00 0.00 41.75 3.85
184 185 4.726583 GACTTTTTAGGGACTTGGGACTT 58.273 43.478 0.00 0.00 41.75 3.01
185 186 5.511888 CGACTTTTTAGGGACTTGGGACTTA 60.512 44.000 0.00 0.00 41.75 2.24
186 187 6.464530 ACTTTTTAGGGACTTGGGACTTAT 57.535 37.500 0.00 0.00 41.75 1.73
187 188 7.578458 ACTTTTTAGGGACTTGGGACTTATA 57.422 36.000 0.00 0.00 41.75 0.98
188 189 7.992295 ACTTTTTAGGGACTTGGGACTTATAA 58.008 34.615 0.00 0.00 41.75 0.98
189 190 8.107729 ACTTTTTAGGGACTTGGGACTTATAAG 58.892 37.037 11.05 11.05 41.75 1.73
190 191 7.578458 TTTTAGGGACTTGGGACTTATAAGT 57.422 36.000 18.05 18.05 40.66 2.24
191 192 7.578458 TTTAGGGACTTGGGACTTATAAGTT 57.422 36.000 18.96 2.29 38.78 2.66
192 193 5.437191 AGGGACTTGGGACTTATAAGTTG 57.563 43.478 18.96 9.81 34.84 3.16
193 194 4.227527 AGGGACTTGGGACTTATAAGTTGG 59.772 45.833 18.96 10.07 34.84 3.77
194 195 4.524053 GGACTTGGGACTTATAAGTTGGG 58.476 47.826 18.96 10.37 39.88 4.12
195 196 4.226620 GGACTTGGGACTTATAAGTTGGGA 59.773 45.833 18.96 6.15 39.88 4.37
196 197 5.175388 ACTTGGGACTTATAAGTTGGGAC 57.825 43.478 18.96 6.19 39.88 4.46
197 198 4.850386 ACTTGGGACTTATAAGTTGGGACT 59.150 41.667 18.96 0.00 39.88 3.85
198 199 6.027482 ACTTGGGACTTATAAGTTGGGACTA 58.973 40.000 18.96 3.96 39.88 2.59
199 200 6.502863 ACTTGGGACTTATAAGTTGGGACTAA 59.497 38.462 18.96 10.32 39.88 2.24
200 201 6.956102 TGGGACTTATAAGTTGGGACTAAA 57.044 37.500 18.96 0.00 39.88 1.85
201 202 7.332433 TGGGACTTATAAGTTGGGACTAAAA 57.668 36.000 18.96 0.00 39.88 1.52
202 203 7.757611 TGGGACTTATAAGTTGGGACTAAAAA 58.242 34.615 18.96 0.00 39.88 1.94
227 228 5.835911 GTCTTAGGACTTACGAACCAAAC 57.164 43.478 0.00 0.00 39.24 2.93
228 229 5.291971 GTCTTAGGACTTACGAACCAAACA 58.708 41.667 0.00 0.00 39.24 2.83
229 230 5.404667 GTCTTAGGACTTACGAACCAAACAG 59.595 44.000 0.00 0.00 39.24 3.16
230 231 3.121738 AGGACTTACGAACCAAACAGG 57.878 47.619 0.00 0.00 45.67 4.00
231 232 2.148768 GGACTTACGAACCAAACAGGG 58.851 52.381 0.00 0.00 43.89 4.45
232 233 1.534163 GACTTACGAACCAAACAGGGC 59.466 52.381 0.00 0.00 43.89 5.19
233 234 0.879090 CTTACGAACCAAACAGGGCC 59.121 55.000 0.00 0.00 43.89 5.80
234 235 0.475044 TTACGAACCAAACAGGGCCT 59.525 50.000 0.00 0.00 43.89 5.19
235 236 1.350071 TACGAACCAAACAGGGCCTA 58.650 50.000 5.28 0.00 43.89 3.93
236 237 0.475044 ACGAACCAAACAGGGCCTAA 59.525 50.000 5.28 0.00 43.89 2.69
237 238 1.165270 CGAACCAAACAGGGCCTAAG 58.835 55.000 5.28 0.00 43.89 2.18
238 239 1.544759 CGAACCAAACAGGGCCTAAGT 60.545 52.381 5.28 0.00 43.89 2.24
239 240 2.594131 GAACCAAACAGGGCCTAAGTT 58.406 47.619 5.28 4.21 43.89 2.66
240 241 3.758425 GAACCAAACAGGGCCTAAGTTA 58.242 45.455 5.28 0.00 43.89 2.24
241 242 3.150458 ACCAAACAGGGCCTAAGTTAC 57.850 47.619 5.28 0.00 43.89 2.50
242 243 2.714793 ACCAAACAGGGCCTAAGTTACT 59.285 45.455 5.28 0.00 43.89 2.24
243 244 3.911894 ACCAAACAGGGCCTAAGTTACTA 59.088 43.478 5.28 0.00 43.89 1.82
244 245 4.259356 CCAAACAGGGCCTAAGTTACTAC 58.741 47.826 5.28 0.00 0.00 2.73
245 246 4.263156 CCAAACAGGGCCTAAGTTACTACA 60.263 45.833 5.28 0.00 0.00 2.74
246 247 5.310451 CAAACAGGGCCTAAGTTACTACAA 58.690 41.667 5.28 0.00 0.00 2.41
247 248 5.774102 AACAGGGCCTAAGTTACTACAAT 57.226 39.130 5.28 0.00 0.00 2.71
248 249 5.774102 ACAGGGCCTAAGTTACTACAATT 57.226 39.130 5.28 0.00 0.00 2.32
249 250 6.879367 ACAGGGCCTAAGTTACTACAATTA 57.121 37.500 5.28 0.00 0.00 1.40
250 251 6.647229 ACAGGGCCTAAGTTACTACAATTAC 58.353 40.000 5.28 0.00 0.00 1.89
251 252 6.442885 ACAGGGCCTAAGTTACTACAATTACT 59.557 38.462 5.28 0.00 0.00 2.24
252 253 7.037802 ACAGGGCCTAAGTTACTACAATTACTT 60.038 37.037 5.28 0.00 35.25 2.24
253 254 7.494952 CAGGGCCTAAGTTACTACAATTACTTC 59.505 40.741 5.28 0.00 33.28 3.01
254 255 7.402361 AGGGCCTAAGTTACTACAATTACTTCT 59.598 37.037 2.82 0.00 33.28 2.85
255 256 7.710044 GGGCCTAAGTTACTACAATTACTTCTC 59.290 40.741 0.84 0.00 33.28 2.87
256 257 7.710044 GGCCTAAGTTACTACAATTACTTCTCC 59.290 40.741 0.00 0.00 33.28 3.71
257 258 8.476447 GCCTAAGTTACTACAATTACTTCTCCT 58.524 37.037 0.00 0.00 33.28 3.69
269 270 9.965902 ACAATTACTTCTCCTCATTAACTCATT 57.034 29.630 0.00 0.00 0.00 2.57
271 272 7.849804 TTACTTCTCCTCATTAACTCATTGC 57.150 36.000 0.00 0.00 0.00 3.56
272 273 5.189180 ACTTCTCCTCATTAACTCATTGCC 58.811 41.667 0.00 0.00 0.00 4.52
273 274 4.842531 TCTCCTCATTAACTCATTGCCA 57.157 40.909 0.00 0.00 0.00 4.92
274 275 4.517285 TCTCCTCATTAACTCATTGCCAC 58.483 43.478 0.00 0.00 0.00 5.01
275 276 4.019411 TCTCCTCATTAACTCATTGCCACA 60.019 41.667 0.00 0.00 0.00 4.17
276 277 4.858850 TCCTCATTAACTCATTGCCACAT 58.141 39.130 0.00 0.00 0.00 3.21
277 278 6.000246 TCCTCATTAACTCATTGCCACATA 58.000 37.500 0.00 0.00 0.00 2.29
278 279 6.422333 TCCTCATTAACTCATTGCCACATAA 58.578 36.000 0.00 0.00 0.00 1.90
279 280 6.543465 TCCTCATTAACTCATTGCCACATAAG 59.457 38.462 0.00 0.00 0.00 1.73
280 281 6.135290 TCATTAACTCATTGCCACATAAGC 57.865 37.500 0.00 0.00 0.00 3.09
281 282 5.651576 TCATTAACTCATTGCCACATAAGCA 59.348 36.000 0.00 0.00 38.81 3.91
304 305 7.792383 CAAATTTGCTGAGTTAGACTTGATG 57.208 36.000 5.01 0.00 0.00 3.07
305 306 7.365741 CAAATTTGCTGAGTTAGACTTGATGT 58.634 34.615 5.01 0.00 0.00 3.06
306 307 7.516198 AATTTGCTGAGTTAGACTTGATGTT 57.484 32.000 0.00 0.00 0.00 2.71
307 308 8.621532 AATTTGCTGAGTTAGACTTGATGTTA 57.378 30.769 0.00 0.00 0.00 2.41
308 309 7.421530 TTTGCTGAGTTAGACTTGATGTTAC 57.578 36.000 0.00 0.00 0.00 2.50
309 310 6.346477 TGCTGAGTTAGACTTGATGTTACT 57.654 37.500 0.00 0.00 0.00 2.24
310 311 6.159293 TGCTGAGTTAGACTTGATGTTACTG 58.841 40.000 0.00 0.00 0.00 2.74
311 312 5.062809 GCTGAGTTAGACTTGATGTTACTGC 59.937 44.000 0.00 0.00 0.00 4.40
312 313 5.479306 TGAGTTAGACTTGATGTTACTGCC 58.521 41.667 0.00 0.00 0.00 4.85
313 314 4.495422 AGTTAGACTTGATGTTACTGCCG 58.505 43.478 0.00 0.00 0.00 5.69
314 315 4.219944 AGTTAGACTTGATGTTACTGCCGA 59.780 41.667 0.00 0.00 0.00 5.54
315 316 3.678056 AGACTTGATGTTACTGCCGAA 57.322 42.857 0.00 0.00 0.00 4.30
316 317 3.589988 AGACTTGATGTTACTGCCGAAG 58.410 45.455 0.00 0.00 0.00 3.79
317 318 3.006967 AGACTTGATGTTACTGCCGAAGT 59.993 43.478 0.00 0.00 43.40 3.01
318 319 3.740115 ACTTGATGTTACTGCCGAAGTT 58.260 40.909 0.00 0.00 40.56 2.66
319 320 4.890088 ACTTGATGTTACTGCCGAAGTTA 58.110 39.130 0.00 0.00 40.56 2.24
320 321 4.689345 ACTTGATGTTACTGCCGAAGTTAC 59.311 41.667 0.00 0.00 40.56 2.50
321 322 4.530710 TGATGTTACTGCCGAAGTTACT 57.469 40.909 8.25 0.00 38.87 2.24
322 323 4.890088 TGATGTTACTGCCGAAGTTACTT 58.110 39.130 0.00 0.00 38.87 2.24
323 324 5.302360 TGATGTTACTGCCGAAGTTACTTT 58.698 37.500 0.00 0.00 38.87 2.66
324 325 5.407387 TGATGTTACTGCCGAAGTTACTTTC 59.593 40.000 0.00 6.50 38.87 2.62
325 326 4.695396 TGTTACTGCCGAAGTTACTTTCA 58.305 39.130 0.00 0.00 38.87 2.69
326 327 5.302360 TGTTACTGCCGAAGTTACTTTCAT 58.698 37.500 0.00 0.00 38.87 2.57
327 328 5.761234 TGTTACTGCCGAAGTTACTTTCATT 59.239 36.000 0.00 0.00 38.87 2.57
328 329 6.930164 TGTTACTGCCGAAGTTACTTTCATTA 59.070 34.615 0.00 0.00 38.87 1.90
329 330 7.604927 TGTTACTGCCGAAGTTACTTTCATTAT 59.395 33.333 0.00 0.00 38.87 1.28
330 331 6.422776 ACTGCCGAAGTTACTTTCATTATG 57.577 37.500 0.00 0.00 34.57 1.90
331 332 5.354234 ACTGCCGAAGTTACTTTCATTATGG 59.646 40.000 0.00 0.00 34.57 2.74
332 333 4.095782 TGCCGAAGTTACTTTCATTATGGC 59.904 41.667 0.00 5.57 38.08 4.40
333 334 4.335594 GCCGAAGTTACTTTCATTATGGCT 59.664 41.667 0.00 0.00 34.86 4.75
334 335 5.526111 GCCGAAGTTACTTTCATTATGGCTA 59.474 40.000 0.00 0.00 34.86 3.93
335 336 6.292919 GCCGAAGTTACTTTCATTATGGCTAG 60.293 42.308 0.00 0.00 34.86 3.42
336 337 6.761714 CCGAAGTTACTTTCATTATGGCTAGT 59.238 38.462 0.00 0.00 0.00 2.57
337 338 7.042658 CCGAAGTTACTTTCATTATGGCTAGTC 60.043 40.741 0.00 0.00 0.00 2.59
338 339 7.707035 CGAAGTTACTTTCATTATGGCTAGTCT 59.293 37.037 0.00 0.00 0.00 3.24
343 344 9.832445 TTACTTTCATTATGGCTAGTCTAAAGG 57.168 33.333 0.00 0.00 0.00 3.11
344 345 7.862675 ACTTTCATTATGGCTAGTCTAAAGGT 58.137 34.615 0.00 0.00 0.00 3.50
345 346 8.329502 ACTTTCATTATGGCTAGTCTAAAGGTT 58.670 33.333 0.00 0.00 0.00 3.50
346 347 9.178758 CTTTCATTATGGCTAGTCTAAAGGTTT 57.821 33.333 0.00 0.00 0.00 3.27
347 348 9.528489 TTTCATTATGGCTAGTCTAAAGGTTTT 57.472 29.630 0.00 0.00 0.00 2.43
348 349 9.528489 TTCATTATGGCTAGTCTAAAGGTTTTT 57.472 29.630 0.00 0.00 0.00 1.94
354 355 8.983702 TGGCTAGTCTAAAGGTTTTTAAAGAA 57.016 30.769 0.00 0.00 0.00 2.52
355 356 9.582648 TGGCTAGTCTAAAGGTTTTTAAAGAAT 57.417 29.630 0.00 0.00 0.00 2.40
357 358 9.756461 GCTAGTCTAAAGGTTTTTAAAGAATCG 57.244 33.333 0.00 0.00 0.00 3.34
359 360 7.591165 AGTCTAAAGGTTTTTAAAGAATCGGC 58.409 34.615 0.00 0.00 0.00 5.54
360 361 6.805271 GTCTAAAGGTTTTTAAAGAATCGGCC 59.195 38.462 0.00 0.00 0.00 6.13
361 362 5.538849 AAAGGTTTTTAAAGAATCGGCCA 57.461 34.783 2.24 0.00 0.00 5.36
362 363 4.783764 AGGTTTTTAAAGAATCGGCCAG 57.216 40.909 2.24 0.00 0.00 4.85
363 364 4.403734 AGGTTTTTAAAGAATCGGCCAGA 58.596 39.130 2.24 0.78 0.00 3.86
364 365 4.459337 AGGTTTTTAAAGAATCGGCCAGAG 59.541 41.667 2.24 0.00 0.00 3.35
365 366 4.457949 GGTTTTTAAAGAATCGGCCAGAGA 59.542 41.667 2.24 0.00 0.00 3.10
366 367 5.392057 GGTTTTTAAAGAATCGGCCAGAGAG 60.392 44.000 2.24 0.00 0.00 3.20
367 368 4.819105 TTTAAAGAATCGGCCAGAGAGA 57.181 40.909 2.24 0.00 0.00 3.10
368 369 2.977772 AAAGAATCGGCCAGAGAGAG 57.022 50.000 2.24 0.00 0.00 3.20
369 370 1.859302 AAGAATCGGCCAGAGAGAGT 58.141 50.000 2.24 0.00 0.00 3.24
370 371 1.398692 AGAATCGGCCAGAGAGAGTC 58.601 55.000 2.24 0.00 0.00 3.36
371 372 1.107114 GAATCGGCCAGAGAGAGTCA 58.893 55.000 2.24 0.00 0.00 3.41
372 373 1.686052 GAATCGGCCAGAGAGAGTCAT 59.314 52.381 2.24 0.00 0.00 3.06
373 374 1.327303 ATCGGCCAGAGAGAGTCATC 58.673 55.000 2.24 0.00 0.00 2.92
374 375 0.257328 TCGGCCAGAGAGAGTCATCT 59.743 55.000 2.24 0.00 38.98 2.90
375 376 1.110442 CGGCCAGAGAGAGTCATCTT 58.890 55.000 2.24 0.00 35.30 2.40
463 498 2.816087 CTGACAGGCTTGCATACAACTT 59.184 45.455 0.00 0.00 0.00 2.66
474 735 8.244113 GGCTTGCATACAACTTTTTATTAGAGT 58.756 33.333 0.00 0.00 0.00 3.24
582 854 4.903638 TGTTGAAACGATAAGAAGAGCG 57.096 40.909 0.00 0.00 0.00 5.03
583 855 3.122948 TGTTGAAACGATAAGAAGAGCGC 59.877 43.478 0.00 0.00 0.00 5.92
629 903 4.215399 CGTGAAGCCAAAGTTTCTGGAATA 59.785 41.667 0.00 0.00 35.85 1.75
679 957 2.148916 TTCAGTTGCGTGTAGTCCAG 57.851 50.000 0.00 0.00 0.00 3.86
787 1068 4.794439 CCATGCCGCGTCTCGTCA 62.794 66.667 4.92 0.00 36.19 4.35
788 1069 2.583319 CATGCCGCGTCTCGTCAT 60.583 61.111 4.92 0.00 36.19 3.06
789 1070 2.583319 ATGCCGCGTCTCGTCATG 60.583 61.111 4.92 0.00 36.19 3.07
790 1071 4.794439 TGCCGCGTCTCGTCATGG 62.794 66.667 4.92 0.00 36.19 3.66
794 1075 4.492160 GCGTCTCGTCATGGGCGA 62.492 66.667 11.55 11.55 36.85 5.54
795 1076 2.579787 CGTCTCGTCATGGGCGAC 60.580 66.667 8.75 4.09 34.47 5.19
833 1114 3.342627 CGGCGCAAAGTTCACGGA 61.343 61.111 10.83 0.00 0.00 4.69
834 1115 2.251371 GGCGCAAAGTTCACGGAC 59.749 61.111 10.83 0.00 0.00 4.79
835 1116 2.251642 GGCGCAAAGTTCACGGACT 61.252 57.895 10.83 0.00 0.00 3.85
836 1117 1.647084 GCGCAAAGTTCACGGACTT 59.353 52.632 0.30 0.00 41.44 3.01
837 1118 0.384353 GCGCAAAGTTCACGGACTTC 60.384 55.000 0.30 0.00 38.86 3.01
838 1119 0.934496 CGCAAAGTTCACGGACTTCA 59.066 50.000 0.00 0.00 38.86 3.02
839 1120 1.332904 CGCAAAGTTCACGGACTTCAC 60.333 52.381 0.00 0.00 38.86 3.18
840 1121 1.332904 GCAAAGTTCACGGACTTCACG 60.333 52.381 0.00 0.00 38.86 4.35
841 1122 1.931172 CAAAGTTCACGGACTTCACGT 59.069 47.619 0.00 0.00 46.82 4.49
846 1127 4.657824 ACGGACTTCACGTGGCCG 62.658 66.667 26.40 26.40 43.78 6.13
865 1146 2.423874 CCGCATGGGCCGTATGTA 59.576 61.111 17.00 0.00 36.38 2.29
866 1147 1.667830 CCGCATGGGCCGTATGTAG 60.668 63.158 17.00 12.27 36.38 2.74
867 1148 2.317609 CGCATGGGCCGTATGTAGC 61.318 63.158 17.00 0.00 36.38 3.58
868 1149 1.071471 GCATGGGCCGTATGTAGCT 59.929 57.895 17.00 0.00 0.00 3.32
869 1150 0.535102 GCATGGGCCGTATGTAGCTT 60.535 55.000 17.00 0.00 0.00 3.74
870 1151 1.229428 CATGGGCCGTATGTAGCTTG 58.771 55.000 0.00 0.00 0.00 4.01
871 1152 0.535102 ATGGGCCGTATGTAGCTTGC 60.535 55.000 0.00 0.00 0.00 4.01
872 1153 1.146263 GGGCCGTATGTAGCTTGCT 59.854 57.895 0.00 0.00 0.00 3.91
873 1154 0.391597 GGGCCGTATGTAGCTTGCTA 59.608 55.000 0.00 0.00 0.00 3.49
874 1155 1.605712 GGGCCGTATGTAGCTTGCTAG 60.606 57.143 2.20 0.00 0.00 3.42
875 1156 1.340248 GGCCGTATGTAGCTTGCTAGA 59.660 52.381 2.20 2.11 0.00 2.43
876 1157 2.028930 GGCCGTATGTAGCTTGCTAGAT 60.029 50.000 15.00 15.00 0.00 1.98
891 1172 2.520069 CTAGATAGTCCACGGCTCCAT 58.480 52.381 0.00 0.00 0.00 3.41
1050 1378 2.705730 AGCACACCACGCATTACATTA 58.294 42.857 0.00 0.00 0.00 1.90
1051 1379 2.418628 AGCACACCACGCATTACATTAC 59.581 45.455 0.00 0.00 0.00 1.89
1053 1381 2.004017 ACACCACGCATTACATTACCG 58.996 47.619 0.00 0.00 0.00 4.02
1054 1382 1.011333 ACCACGCATTACATTACCGC 58.989 50.000 0.00 0.00 0.00 5.68
1055 1383 1.010580 CCACGCATTACATTACCGCA 58.989 50.000 0.00 0.00 0.00 5.69
1057 1385 2.159503 CCACGCATTACATTACCGCAAA 60.160 45.455 0.00 0.00 0.00 3.68
1058 1386 3.493272 CACGCATTACATTACCGCAAAA 58.507 40.909 0.00 0.00 0.00 2.44
1126 1480 2.978565 AGCAGCAGCAGCACACAG 60.979 61.111 12.92 0.00 45.49 3.66
1275 1676 2.693864 CTGGAGGAGGTGGCCCAT 60.694 66.667 0.00 0.00 0.00 4.00
1566 1976 0.305313 CGAACGAAACCTTGGCGAAA 59.695 50.000 0.00 0.00 0.00 3.46
1701 2119 1.364171 GGCACACGAGACTGACAGT 59.636 57.895 8.12 8.12 0.00 3.55
1735 2182 0.243365 TTTTTGCACATAGCCCTGCG 59.757 50.000 0.00 0.00 44.83 5.18
1739 2186 4.529219 CACATAGCCCTGCGCCGA 62.529 66.667 4.18 0.00 38.78 5.54
1740 2187 4.227134 ACATAGCCCTGCGCCGAG 62.227 66.667 4.18 0.00 38.78 4.63
1753 2206 3.955101 CCGAGTAGCCGCGAGAGG 61.955 72.222 8.23 0.00 35.78 3.69
1763 2216 2.665185 GCGAGAGGTGCGTGGTTT 60.665 61.111 0.00 0.00 0.00 3.27
1904 2396 2.171448 AGGAGGGAATGCACATACAGAC 59.829 50.000 0.00 0.00 0.00 3.51
1944 2463 6.766467 ACTGTATAAATGCTTAGTTACTGGCC 59.234 38.462 0.00 0.00 0.00 5.36
1953 2472 4.323257 GCTTAGTTACTGGCCTTAAGTCCA 60.323 45.833 4.93 4.93 0.00 4.02
1960 2479 1.270625 TGGCCTTAAGTCCACTGTTCG 60.271 52.381 0.00 0.00 0.00 3.95
1967 2486 1.227853 GTCCACTGTTCGTGCCCTT 60.228 57.895 0.00 0.00 42.42 3.95
1976 2495 6.210078 CACTGTTCGTGCCCTTATTTTTAAA 58.790 36.000 0.00 0.00 36.72 1.52
2008 2529 2.280628 GAACCAGTAAATCAGAGGCCG 58.719 52.381 0.00 0.00 0.00 6.13
2012 2533 0.107654 AGTAAATCAGAGGCCGGTGC 60.108 55.000 1.90 0.00 0.00 5.01
2017 2538 2.859273 ATCAGAGGCCGGTGCGAAAG 62.859 60.000 1.90 0.00 38.85 2.62
2021 2542 1.792118 GAGGCCGGTGCGAAAGTTTT 61.792 55.000 1.90 0.00 38.85 2.43
2027 2548 3.060807 GCCGGTGCGAAAGTTTTAAAAAG 60.061 43.478 1.90 0.00 0.00 2.27
2028 2549 4.352887 CCGGTGCGAAAGTTTTAAAAAGA 58.647 39.130 1.31 0.00 0.00 2.52
2029 2550 4.439776 CCGGTGCGAAAGTTTTAAAAAGAG 59.560 41.667 1.31 0.00 0.00 2.85
2111 2659 6.688637 AAGAACAAAGTTACTAACACACCC 57.311 37.500 1.79 0.00 0.00 4.61
2117 2665 4.935352 AGTTACTAACACACCCGTACAA 57.065 40.909 1.79 0.00 0.00 2.41
2125 2673 3.463944 ACACACCCGTACAAAGAAAGAG 58.536 45.455 0.00 0.00 0.00 2.85
2128 2676 4.025145 CACACCCGTACAAAGAAAGAGAAC 60.025 45.833 0.00 0.00 0.00 3.01
2161 2710 5.559148 TTCTTGGGTGTGCCAAAATATTT 57.441 34.783 0.00 0.00 36.17 1.40
2176 2725 6.201425 CCAAAATATTTTTCCTCATGCATCCG 59.799 38.462 10.77 0.00 0.00 4.18
2178 2727 6.469782 AATATTTTTCCTCATGCATCCGTT 57.530 33.333 0.00 0.00 0.00 4.44
2181 2730 1.031571 TTCCTCATGCATCCGTTGGC 61.032 55.000 0.00 0.00 0.00 4.52
2183 2732 1.815003 CTCATGCATCCGTTGGCGA 60.815 57.895 0.00 0.00 41.33 5.54
2185 2734 2.046411 ATGCATCCGTTGGCGACA 60.046 55.556 5.58 0.00 41.33 4.35
2199 2748 2.551270 GACACGCCGTGAGCAAAG 59.449 61.111 25.94 0.00 44.04 2.77
2202 2751 2.591715 ACGCCGTGAGCAAAGCTT 60.592 55.556 0.00 0.00 44.04 3.74
2203 2752 2.127118 CGCCGTGAGCAAAGCTTG 60.127 61.111 0.00 0.00 44.04 4.01
2213 2762 0.242017 GCAAAGCTTGATGCCGTCTT 59.758 50.000 11.37 0.00 44.23 3.01
2217 2766 0.962356 AGCTTGATGCCGTCTTTGGG 60.962 55.000 0.00 0.00 44.23 4.12
2218 2767 0.960364 GCTTGATGCCGTCTTTGGGA 60.960 55.000 0.00 0.00 35.15 4.37
2220 2769 2.094675 CTTGATGCCGTCTTTGGGATT 58.905 47.619 0.00 0.00 40.55 3.01
2221 2770 2.214376 TGATGCCGTCTTTGGGATTT 57.786 45.000 0.00 0.00 40.55 2.17
2228 2777 1.804151 CGTCTTTGGGATTTCGCTTCA 59.196 47.619 0.00 0.00 0.00 3.02
2230 2779 2.814336 GTCTTTGGGATTTCGCTTCAGT 59.186 45.455 0.00 0.00 0.00 3.41
2251 2800 4.709886 AGTGGAGCAAACTTGTTTAAACCT 59.290 37.500 15.59 3.51 0.00 3.50
2256 2805 7.139392 GGAGCAAACTTGTTTAAACCTAAGAG 58.861 38.462 19.72 11.20 0.00 2.85
2265 2814 8.603242 TTGTTTAAACCTAAGAGCTTGTAGAG 57.397 34.615 15.59 0.86 0.00 2.43
2267 2816 3.897141 AACCTAAGAGCTTGTAGAGGC 57.103 47.619 6.26 0.00 0.00 4.70
2269 2818 3.173965 ACCTAAGAGCTTGTAGAGGCAA 58.826 45.455 0.00 0.00 0.00 4.52
2274 2823 0.622665 AGCTTGTAGAGGCAATGGCT 59.377 50.000 9.72 9.72 42.48 4.75
2277 2826 0.991146 TTGTAGAGGCAATGGCTGGA 59.009 50.000 15.83 0.00 38.98 3.86
2283 2832 0.962356 AGGCAATGGCTGGAAAGTCG 60.962 55.000 9.02 0.00 40.87 4.18
2286 2835 1.522668 CAATGGCTGGAAAGTCGTCA 58.477 50.000 0.00 0.00 0.00 4.35
2288 2837 2.270352 ATGGCTGGAAAGTCGTCAAA 57.730 45.000 0.00 0.00 0.00 2.69
2289 2838 1.305201 TGGCTGGAAAGTCGTCAAAC 58.695 50.000 0.00 0.00 0.00 2.93
2290 2839 1.305201 GGCTGGAAAGTCGTCAAACA 58.695 50.000 0.00 0.00 0.00 2.83
2291 2840 1.264288 GGCTGGAAAGTCGTCAAACAG 59.736 52.381 0.00 0.00 0.00 3.16
2292 2841 2.210116 GCTGGAAAGTCGTCAAACAGA 58.790 47.619 0.00 0.00 0.00 3.41
2294 2843 3.303395 GCTGGAAAGTCGTCAAACAGAAG 60.303 47.826 0.00 0.00 0.00 2.85
2295 2844 4.119862 CTGGAAAGTCGTCAAACAGAAGA 58.880 43.478 0.00 0.00 32.12 2.87
2306 2864 0.952280 AACAGAAGACGCGAGACTGA 59.048 50.000 15.93 0.00 35.97 3.41
2315 2873 3.039405 GACGCGAGACTGATGAAGTATG 58.961 50.000 15.93 0.00 40.07 2.39
2368 2926 5.301298 ACTGAGTAGTGAAGTTTAACTCGGT 59.699 40.000 8.96 8.96 46.72 4.69
2373 2931 1.418637 TGAAGTTTAACTCGGTGGCCT 59.581 47.619 3.32 0.00 0.00 5.19
2384 2942 2.414138 CTCGGTGGCCTAAAACTAAACG 59.586 50.000 3.32 0.00 0.00 3.60
2402 2960 7.905126 ACTAAACGATTTTGGCAAAGAAAAAG 58.095 30.769 13.04 8.56 0.00 2.27
2403 2961 6.976636 AAACGATTTTGGCAAAGAAAAAGA 57.023 29.167 13.04 0.00 0.00 2.52
2408 2966 7.119116 ACGATTTTGGCAAAGAAAAAGAAAGTT 59.881 29.630 13.04 0.00 0.00 2.66
2417 2975 9.741168 GCAAAGAAAAAGAAAGTTAAGTTCAAC 57.259 29.630 0.00 0.00 0.00 3.18
2426 2984 7.439381 AGAAAGTTAAGTTCAACAGATCGGTA 58.561 34.615 0.00 0.00 0.00 4.02
2434 2992 3.581755 TCAACAGATCGGTAAGAAACGG 58.418 45.455 0.00 0.00 0.00 4.44
2446 3004 6.817641 TCGGTAAGAAACGGCAATATTTTAGA 59.182 34.615 0.00 0.00 0.00 2.10
2449 3007 7.281549 GGTAAGAAACGGCAATATTTTAGAGGA 59.718 37.037 0.00 0.00 0.00 3.71
2451 3009 5.823045 AGAAACGGCAATATTTTAGAGGAGG 59.177 40.000 0.00 0.00 0.00 4.30
2452 3010 5.367945 AACGGCAATATTTTAGAGGAGGA 57.632 39.130 0.00 0.00 0.00 3.71
2488 3046 8.749026 TCTAAAAGATACTCAGTCGTATCCTT 57.251 34.615 7.19 4.93 44.28 3.36
2496 3059 8.927675 ATACTCAGTCGTATCCTTCTCTAAAT 57.072 34.615 0.00 0.00 0.00 1.40
2519 3082 2.897271 AGGGGATTGTTACACATGCA 57.103 45.000 0.00 0.00 0.00 3.96
2520 3083 3.386932 AGGGGATTGTTACACATGCAT 57.613 42.857 0.00 0.00 0.00 3.96
2523 3086 5.268387 AGGGGATTGTTACACATGCATTTA 58.732 37.500 0.00 0.00 0.00 1.40
2544 3107 2.972713 AGTTTCTTAGAGTGCTGGGTGA 59.027 45.455 0.00 0.00 0.00 4.02
2550 3113 3.909086 GAGTGCTGGGTGAGGTGGC 62.909 68.421 0.00 0.00 0.00 5.01
2581 3144 5.264712 CGTGGTAGAAATAGTCTCGTCTTC 58.735 45.833 0.00 0.00 37.84 2.87
2582 3145 5.264712 GTGGTAGAAATAGTCTCGTCTTCG 58.735 45.833 0.00 0.00 37.84 3.79
2585 3148 2.688958 AGAAATAGTCTCGTCTTCGGGG 59.311 50.000 0.00 0.00 38.21 5.73
2587 3150 1.677942 ATAGTCTCGTCTTCGGGGAC 58.322 55.000 0.00 0.00 38.21 4.46
2602 3165 3.436359 TCGGGGACTGTTAATTTAAACGC 59.564 43.478 0.00 0.00 35.30 4.84
2604 3167 3.506844 GGGGACTGTTAATTTAAACGCCA 59.493 43.478 0.00 0.00 31.76 5.69
2605 3168 4.158949 GGGGACTGTTAATTTAAACGCCAT 59.841 41.667 0.00 0.00 31.76 4.40
2624 3188 3.416277 CATAAACACGAGGAAATGCACG 58.584 45.455 0.00 0.00 0.00 5.34
2632 3196 4.148871 CACGAGGAAATGCACGTATAGATG 59.851 45.833 0.00 0.00 37.22 2.90
2639 3203 8.097038 AGGAAATGCACGTATAGATGAATGTAT 58.903 33.333 0.00 0.00 0.00 2.29
2643 3207 7.406799 TGCACGTATAGATGAATGTATTGTG 57.593 36.000 0.00 7.55 30.96 3.33
2655 3219 6.804677 TGAATGTATTGTGAATATTGCACCC 58.195 36.000 12.51 0.00 35.43 4.61
2668 3232 1.164411 TGCACCCGCAGAAAATGTAG 58.836 50.000 0.00 0.00 45.36 2.74
2702 3266 6.706055 AATTATGTGGAATACGTATGCTCG 57.294 37.500 13.33 0.00 31.12 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.840321 CATGTTTGGTTTAGATGGGACTTATAG 58.160 37.037 0.00 0.00 0.00 1.31
1 2 8.553153 TCATGTTTGGTTTAGATGGGACTTATA 58.447 33.333 0.00 0.00 0.00 0.98
3 4 6.785076 TCATGTTTGGTTTAGATGGGACTTA 58.215 36.000 0.00 0.00 0.00 2.24
4 5 5.640147 TCATGTTTGGTTTAGATGGGACTT 58.360 37.500 0.00 0.00 0.00 3.01
5 6 5.014123 TCTCATGTTTGGTTTAGATGGGACT 59.986 40.000 0.00 0.00 0.00 3.85
6 7 5.253330 TCTCATGTTTGGTTTAGATGGGAC 58.747 41.667 0.00 0.00 0.00 4.46
9 10 6.176183 AGTCTCTCATGTTTGGTTTAGATGG 58.824 40.000 0.00 0.00 0.00 3.51
10 11 7.678947 AAGTCTCTCATGTTTGGTTTAGATG 57.321 36.000 0.00 0.00 0.00 2.90
13 14 9.319143 CCTATAAGTCTCTCATGTTTGGTTTAG 57.681 37.037 0.00 0.00 0.00 1.85
14 15 8.265055 CCCTATAAGTCTCTCATGTTTGGTTTA 58.735 37.037 0.00 0.00 0.00 2.01
15 16 7.037586 TCCCTATAAGTCTCTCATGTTTGGTTT 60.038 37.037 0.00 0.00 0.00 3.27
16 17 6.443849 TCCCTATAAGTCTCTCATGTTTGGTT 59.556 38.462 0.00 0.00 0.00 3.67
17 18 5.964477 TCCCTATAAGTCTCTCATGTTTGGT 59.036 40.000 0.00 0.00 0.00 3.67
18 19 6.098982 AGTCCCTATAAGTCTCTCATGTTTGG 59.901 42.308 0.00 0.00 0.00 3.28
19 20 7.118496 AGTCCCTATAAGTCTCTCATGTTTG 57.882 40.000 0.00 0.00 0.00 2.93
20 21 7.741554 AAGTCCCTATAAGTCTCTCATGTTT 57.258 36.000 0.00 0.00 0.00 2.83
21 22 8.840200 TTAAGTCCCTATAAGTCTCTCATGTT 57.160 34.615 0.00 0.00 0.00 2.71
22 23 8.840200 TTTAAGTCCCTATAAGTCTCTCATGT 57.160 34.615 0.00 0.00 0.00 3.21
23 24 8.919145 ACTTTAAGTCCCTATAAGTCTCTCATG 58.081 37.037 0.00 0.00 0.00 3.07
24 25 8.919145 CACTTTAAGTCCCTATAAGTCTCTCAT 58.081 37.037 0.00 0.00 0.00 2.90
25 26 7.342284 CCACTTTAAGTCCCTATAAGTCTCTCA 59.658 40.741 0.00 0.00 0.00 3.27
26 27 7.201929 CCCACTTTAAGTCCCTATAAGTCTCTC 60.202 44.444 0.00 0.00 0.00 3.20
27 28 6.612049 CCCACTTTAAGTCCCTATAAGTCTCT 59.388 42.308 0.00 0.00 0.00 3.10
28 29 6.685873 GCCCACTTTAAGTCCCTATAAGTCTC 60.686 46.154 0.00 0.00 0.00 3.36
29 30 5.130643 GCCCACTTTAAGTCCCTATAAGTCT 59.869 44.000 0.00 0.00 0.00 3.24
30 31 5.104652 TGCCCACTTTAAGTCCCTATAAGTC 60.105 44.000 0.00 0.00 0.00 3.01
31 32 4.786454 TGCCCACTTTAAGTCCCTATAAGT 59.214 41.667 0.00 0.00 0.00 2.24
32 33 5.367945 TGCCCACTTTAAGTCCCTATAAG 57.632 43.478 0.00 0.00 0.00 1.73
33 34 5.987019 ATGCCCACTTTAAGTCCCTATAA 57.013 39.130 0.00 0.00 0.00 0.98
34 35 5.987019 AATGCCCACTTTAAGTCCCTATA 57.013 39.130 0.00 0.00 0.00 1.31
35 36 4.881157 AATGCCCACTTTAAGTCCCTAT 57.119 40.909 0.00 0.00 0.00 2.57
36 37 4.340617 CAAATGCCCACTTTAAGTCCCTA 58.659 43.478 0.00 0.00 0.00 3.53
37 38 3.165071 CAAATGCCCACTTTAAGTCCCT 58.835 45.455 0.00 0.00 0.00 4.20
38 39 2.233676 CCAAATGCCCACTTTAAGTCCC 59.766 50.000 0.00 0.00 0.00 4.46
39 40 2.233676 CCCAAATGCCCACTTTAAGTCC 59.766 50.000 0.00 0.00 0.00 3.85
40 41 3.056821 GTCCCAAATGCCCACTTTAAGTC 60.057 47.826 0.00 0.00 0.00 3.01
41 42 2.897326 GTCCCAAATGCCCACTTTAAGT 59.103 45.455 0.00 0.00 0.00 2.24
42 43 3.165071 AGTCCCAAATGCCCACTTTAAG 58.835 45.455 0.00 0.00 0.00 1.85
43 44 3.252554 AGTCCCAAATGCCCACTTTAA 57.747 42.857 0.00 0.00 0.00 1.52
44 45 2.990740 AGTCCCAAATGCCCACTTTA 57.009 45.000 0.00 0.00 0.00 1.85
45 46 2.101640 AAGTCCCAAATGCCCACTTT 57.898 45.000 0.00 0.00 0.00 2.66
46 47 2.990740 TAAGTCCCAAATGCCCACTT 57.009 45.000 0.00 0.00 0.00 3.16
47 48 2.311542 TCATAAGTCCCAAATGCCCACT 59.688 45.455 0.00 0.00 0.00 4.00
48 49 2.733956 TCATAAGTCCCAAATGCCCAC 58.266 47.619 0.00 0.00 0.00 4.61
49 50 3.464720 TTCATAAGTCCCAAATGCCCA 57.535 42.857 0.00 0.00 0.00 5.36
50 51 6.323739 TCTTATTTCATAAGTCCCAAATGCCC 59.676 38.462 3.93 0.00 42.21 5.36
51 52 7.068716 AGTCTTATTTCATAAGTCCCAAATGCC 59.931 37.037 3.93 0.00 42.21 4.40
52 53 8.000780 AGTCTTATTTCATAAGTCCCAAATGC 57.999 34.615 3.93 0.00 42.21 3.56
53 54 9.401058 AGAGTCTTATTTCATAAGTCCCAAATG 57.599 33.333 3.93 0.00 42.21 2.32
54 55 9.620259 GAGAGTCTTATTTCATAAGTCCCAAAT 57.380 33.333 0.00 0.00 42.21 2.32
55 56 8.602424 TGAGAGTCTTATTTCATAAGTCCCAAA 58.398 33.333 0.00 0.00 42.21 3.28
56 57 8.146053 TGAGAGTCTTATTTCATAAGTCCCAA 57.854 34.615 0.00 0.00 42.21 4.12
57 58 7.733773 TGAGAGTCTTATTTCATAAGTCCCA 57.266 36.000 0.00 0.00 42.21 4.37
58 59 7.713073 CCTTGAGAGTCTTATTTCATAAGTCCC 59.287 40.741 0.00 0.00 42.21 4.46
59 60 8.478877 TCCTTGAGAGTCTTATTTCATAAGTCC 58.521 37.037 0.00 0.00 42.21 3.85
60 61 9.528018 CTCCTTGAGAGTCTTATTTCATAAGTC 57.472 37.037 0.00 0.00 37.60 3.01
61 62 8.482128 CCTCCTTGAGAGTCTTATTTCATAAGT 58.518 37.037 0.00 0.00 41.47 2.24
62 63 7.930865 CCCTCCTTGAGAGTCTTATTTCATAAG 59.069 40.741 0.00 0.00 41.47 1.73
63 64 7.623677 TCCCTCCTTGAGAGTCTTATTTCATAA 59.376 37.037 0.00 0.00 41.47 1.90
64 65 7.070074 GTCCCTCCTTGAGAGTCTTATTTCATA 59.930 40.741 0.00 0.00 41.47 2.15
65 66 5.966935 TCCCTCCTTGAGAGTCTTATTTCAT 59.033 40.000 0.00 0.00 41.47 2.57
66 67 5.187967 GTCCCTCCTTGAGAGTCTTATTTCA 59.812 44.000 0.00 0.00 41.47 2.69
67 68 5.423931 AGTCCCTCCTTGAGAGTCTTATTTC 59.576 44.000 0.00 0.00 41.47 2.17
68 69 5.346270 AGTCCCTCCTTGAGAGTCTTATTT 58.654 41.667 0.00 0.00 41.47 1.40
69 70 4.954089 AGTCCCTCCTTGAGAGTCTTATT 58.046 43.478 0.00 0.00 41.47 1.40
70 71 4.618378 AGTCCCTCCTTGAGAGTCTTAT 57.382 45.455 0.00 0.00 41.47 1.73
71 72 4.405756 AAGTCCCTCCTTGAGAGTCTTA 57.594 45.455 0.00 0.00 41.47 2.10
72 73 3.268034 AAGTCCCTCCTTGAGAGTCTT 57.732 47.619 0.00 0.00 41.47 3.01
73 74 4.618378 ATAAGTCCCTCCTTGAGAGTCT 57.382 45.455 0.00 0.00 41.47 3.24
74 75 5.245075 CCATATAAGTCCCTCCTTGAGAGTC 59.755 48.000 0.00 0.00 41.47 3.36
75 76 5.103043 TCCATATAAGTCCCTCCTTGAGAGT 60.103 44.000 0.00 0.00 41.47 3.24
76 77 5.245075 GTCCATATAAGTCCCTCCTTGAGAG 59.755 48.000 0.00 0.00 42.83 3.20
77 78 5.103043 AGTCCATATAAGTCCCTCCTTGAGA 60.103 44.000 0.00 0.00 0.00 3.27
78 79 5.151454 AGTCCATATAAGTCCCTCCTTGAG 58.849 45.833 0.00 0.00 0.00 3.02
79 80 5.157770 AGTCCATATAAGTCCCTCCTTGA 57.842 43.478 0.00 0.00 0.00 3.02
80 81 5.896073 AAGTCCATATAAGTCCCTCCTTG 57.104 43.478 0.00 0.00 0.00 3.61
81 82 8.465971 ACTATAAGTCCATATAAGTCCCTCCTT 58.534 37.037 0.00 0.00 0.00 3.36
82 83 8.013806 ACTATAAGTCCATATAAGTCCCTCCT 57.986 38.462 0.00 0.00 0.00 3.69
83 84 8.532819 CAACTATAAGTCCATATAAGTCCCTCC 58.467 40.741 0.00 0.00 0.00 4.30
84 85 9.091220 ACAACTATAAGTCCATATAAGTCCCTC 57.909 37.037 0.00 0.00 0.00 4.30
128 129 7.311109 CCTGTTTGGTTCCTAGGACTTATAAGT 60.311 40.741 18.05 18.05 43.16 2.24
129 130 7.048512 CCTGTTTGGTTCCTAGGACTTATAAG 58.951 42.308 12.22 11.05 0.00 1.73
130 131 6.954232 CCTGTTTGGTTCCTAGGACTTATAA 58.046 40.000 12.22 0.00 0.00 0.98
131 132 6.555463 CCTGTTTGGTTCCTAGGACTTATA 57.445 41.667 12.22 0.00 0.00 0.98
132 133 5.437191 CCTGTTTGGTTCCTAGGACTTAT 57.563 43.478 12.22 0.00 0.00 1.73
133 134 4.903045 CCTGTTTGGTTCCTAGGACTTA 57.097 45.455 12.22 0.00 0.00 2.24
134 135 3.790089 CCTGTTTGGTTCCTAGGACTT 57.210 47.619 12.22 0.00 0.00 3.01
146 147 0.974383 AGTCGTCCCTACCTGTTTGG 59.026 55.000 0.00 0.00 42.93 3.28
147 148 2.833631 AAGTCGTCCCTACCTGTTTG 57.166 50.000 0.00 0.00 0.00 2.93
148 149 3.851458 AAAAGTCGTCCCTACCTGTTT 57.149 42.857 0.00 0.00 0.00 2.83
149 150 3.851458 AAAAAGTCGTCCCTACCTGTT 57.149 42.857 0.00 0.00 0.00 3.16
150 151 3.260128 CCTAAAAAGTCGTCCCTACCTGT 59.740 47.826 0.00 0.00 0.00 4.00
151 152 3.369157 CCCTAAAAAGTCGTCCCTACCTG 60.369 52.174 0.00 0.00 0.00 4.00
152 153 2.836372 CCCTAAAAAGTCGTCCCTACCT 59.164 50.000 0.00 0.00 0.00 3.08
153 154 2.833943 TCCCTAAAAAGTCGTCCCTACC 59.166 50.000 0.00 0.00 0.00 3.18
154 155 3.513119 AGTCCCTAAAAAGTCGTCCCTAC 59.487 47.826 0.00 0.00 0.00 3.18
155 156 3.782992 AGTCCCTAAAAAGTCGTCCCTA 58.217 45.455 0.00 0.00 0.00 3.53
156 157 2.617658 AGTCCCTAAAAAGTCGTCCCT 58.382 47.619 0.00 0.00 0.00 4.20
157 158 3.072211 CAAGTCCCTAAAAAGTCGTCCC 58.928 50.000 0.00 0.00 0.00 4.46
158 159 3.072211 CCAAGTCCCTAAAAAGTCGTCC 58.928 50.000 0.00 0.00 0.00 4.79
159 160 3.072211 CCCAAGTCCCTAAAAAGTCGTC 58.928 50.000 0.00 0.00 0.00 4.20
160 161 2.707257 TCCCAAGTCCCTAAAAAGTCGT 59.293 45.455 0.00 0.00 0.00 4.34
161 162 3.072211 GTCCCAAGTCCCTAAAAAGTCG 58.928 50.000 0.00 0.00 0.00 4.18
162 163 4.368565 AGTCCCAAGTCCCTAAAAAGTC 57.631 45.455 0.00 0.00 0.00 3.01
163 164 4.808767 AAGTCCCAAGTCCCTAAAAAGT 57.191 40.909 0.00 0.00 0.00 2.66
164 165 8.107729 ACTTATAAGTCCCAAGTCCCTAAAAAG 58.892 37.037 12.50 0.00 32.86 2.27
165 166 7.992295 ACTTATAAGTCCCAAGTCCCTAAAAA 58.008 34.615 12.50 0.00 32.86 1.94
166 167 7.578458 ACTTATAAGTCCCAAGTCCCTAAAA 57.422 36.000 12.50 0.00 32.86 1.52
167 168 7.399634 CAACTTATAAGTCCCAAGTCCCTAAA 58.600 38.462 18.28 0.00 38.57 1.85
168 169 6.069847 CCAACTTATAAGTCCCAAGTCCCTAA 60.070 42.308 18.28 0.00 38.57 2.69
169 170 5.427481 CCAACTTATAAGTCCCAAGTCCCTA 59.573 44.000 18.28 0.00 38.57 3.53
170 171 4.227527 CCAACTTATAAGTCCCAAGTCCCT 59.772 45.833 18.28 0.00 38.57 4.20
171 172 4.524053 CCAACTTATAAGTCCCAAGTCCC 58.476 47.826 18.28 0.00 38.57 4.46
172 173 4.226620 TCCCAACTTATAAGTCCCAAGTCC 59.773 45.833 18.28 0.00 38.57 3.85
173 174 5.045797 AGTCCCAACTTATAAGTCCCAAGTC 60.046 44.000 18.28 6.78 38.57 3.01
174 175 4.850386 AGTCCCAACTTATAAGTCCCAAGT 59.150 41.667 18.28 5.74 38.57 3.16
175 176 5.437191 AGTCCCAACTTATAAGTCCCAAG 57.563 43.478 18.28 6.66 38.57 3.61
176 177 6.956102 TTAGTCCCAACTTATAAGTCCCAA 57.044 37.500 18.28 3.05 38.57 4.12
177 178 6.956102 TTTAGTCCCAACTTATAAGTCCCA 57.044 37.500 18.28 1.06 38.57 4.37
205 206 5.291971 TGTTTGGTTCGTAAGTCCTAAGAC 58.708 41.667 0.00 0.00 43.89 3.01
206 207 5.510179 CCTGTTTGGTTCGTAAGTCCTAAGA 60.510 44.000 0.00 0.00 39.48 2.10
207 208 4.689345 CCTGTTTGGTTCGTAAGTCCTAAG 59.311 45.833 0.00 0.00 39.48 2.18
208 209 4.503643 CCCTGTTTGGTTCGTAAGTCCTAA 60.504 45.833 0.00 0.00 39.48 2.69
209 210 3.007182 CCCTGTTTGGTTCGTAAGTCCTA 59.993 47.826 0.00 0.00 39.48 2.94
210 211 2.224450 CCCTGTTTGGTTCGTAAGTCCT 60.224 50.000 0.00 0.00 39.48 3.85
211 212 2.148768 CCCTGTTTGGTTCGTAAGTCC 58.851 52.381 0.00 0.00 39.48 3.85
212 213 1.534163 GCCCTGTTTGGTTCGTAAGTC 59.466 52.381 0.00 0.00 39.48 3.01
213 214 1.601166 GCCCTGTTTGGTTCGTAAGT 58.399 50.000 0.00 0.00 39.48 2.24
214 215 0.879090 GGCCCTGTTTGGTTCGTAAG 59.121 55.000 0.00 0.00 0.00 2.34
215 216 0.475044 AGGCCCTGTTTGGTTCGTAA 59.525 50.000 0.00 0.00 0.00 3.18
216 217 1.350071 TAGGCCCTGTTTGGTTCGTA 58.650 50.000 0.00 0.00 0.00 3.43
217 218 0.475044 TTAGGCCCTGTTTGGTTCGT 59.525 50.000 0.00 0.00 0.00 3.85
218 219 1.165270 CTTAGGCCCTGTTTGGTTCG 58.835 55.000 0.00 0.00 0.00 3.95
219 220 2.287977 ACTTAGGCCCTGTTTGGTTC 57.712 50.000 0.00 0.00 0.00 3.62
220 221 2.767644 AACTTAGGCCCTGTTTGGTT 57.232 45.000 0.00 0.00 0.00 3.67
221 222 2.714793 AGTAACTTAGGCCCTGTTTGGT 59.285 45.455 0.00 0.00 0.00 3.67
222 223 3.434940 AGTAACTTAGGCCCTGTTTGG 57.565 47.619 0.00 0.00 0.00 3.28
223 224 4.901868 TGTAGTAACTTAGGCCCTGTTTG 58.098 43.478 0.00 0.00 0.00 2.93
224 225 5.571791 TTGTAGTAACTTAGGCCCTGTTT 57.428 39.130 0.00 0.00 0.00 2.83
225 226 5.774102 ATTGTAGTAACTTAGGCCCTGTT 57.226 39.130 0.00 4.89 0.00 3.16
226 227 5.774102 AATTGTAGTAACTTAGGCCCTGT 57.226 39.130 0.00 0.00 0.00 4.00
227 228 6.885922 AGTAATTGTAGTAACTTAGGCCCTG 58.114 40.000 0.00 0.00 0.00 4.45
228 229 7.402361 AGAAGTAATTGTAGTAACTTAGGCCCT 59.598 37.037 0.00 0.00 32.51 5.19
229 230 7.563020 AGAAGTAATTGTAGTAACTTAGGCCC 58.437 38.462 0.00 0.00 32.51 5.80
230 231 7.710044 GGAGAAGTAATTGTAGTAACTTAGGCC 59.290 40.741 0.00 0.00 32.51 5.19
231 232 8.476447 AGGAGAAGTAATTGTAGTAACTTAGGC 58.524 37.037 0.00 0.00 32.51 3.93
243 244 9.965902 AATGAGTTAATGAGGAGAAGTAATTGT 57.034 29.630 0.00 0.00 0.00 2.71
245 246 8.897752 GCAATGAGTTAATGAGGAGAAGTAATT 58.102 33.333 0.00 0.00 0.00 1.40
246 247 7.500559 GGCAATGAGTTAATGAGGAGAAGTAAT 59.499 37.037 0.00 0.00 0.00 1.89
247 248 6.823689 GGCAATGAGTTAATGAGGAGAAGTAA 59.176 38.462 0.00 0.00 0.00 2.24
248 249 6.070251 TGGCAATGAGTTAATGAGGAGAAGTA 60.070 38.462 0.00 0.00 0.00 2.24
249 250 5.189180 GGCAATGAGTTAATGAGGAGAAGT 58.811 41.667 0.00 0.00 0.00 3.01
250 251 5.065731 GTGGCAATGAGTTAATGAGGAGAAG 59.934 44.000 0.00 0.00 0.00 2.85
251 252 4.943705 GTGGCAATGAGTTAATGAGGAGAA 59.056 41.667 0.00 0.00 0.00 2.87
252 253 4.019411 TGTGGCAATGAGTTAATGAGGAGA 60.019 41.667 0.00 0.00 0.00 3.71
253 254 4.264253 TGTGGCAATGAGTTAATGAGGAG 58.736 43.478 0.00 0.00 0.00 3.69
254 255 4.299586 TGTGGCAATGAGTTAATGAGGA 57.700 40.909 0.00 0.00 0.00 3.71
255 256 6.698008 TTATGTGGCAATGAGTTAATGAGG 57.302 37.500 0.00 0.00 0.00 3.86
256 257 6.183360 TGCTTATGTGGCAATGAGTTAATGAG 60.183 38.462 0.00 0.00 36.71 2.90
257 258 5.651576 TGCTTATGTGGCAATGAGTTAATGA 59.348 36.000 0.00 0.00 36.71 2.57
258 259 5.893687 TGCTTATGTGGCAATGAGTTAATG 58.106 37.500 0.00 0.00 36.71 1.90
259 260 6.528537 TTGCTTATGTGGCAATGAGTTAAT 57.471 33.333 0.00 0.00 43.50 1.40
260 261 5.973899 TTGCTTATGTGGCAATGAGTTAA 57.026 34.783 0.00 0.00 43.50 2.01
261 262 5.973899 TTTGCTTATGTGGCAATGAGTTA 57.026 34.783 2.01 0.00 46.81 2.24
262 263 4.870123 TTTGCTTATGTGGCAATGAGTT 57.130 36.364 2.01 0.00 46.81 3.01
263 264 5.410355 AATTTGCTTATGTGGCAATGAGT 57.590 34.783 2.01 0.00 46.81 3.41
264 265 6.102006 CAAATTTGCTTATGTGGCAATGAG 57.898 37.500 5.01 0.00 46.81 2.90
280 281 7.365741 ACATCAAGTCTAACTCAGCAAATTTG 58.634 34.615 14.03 14.03 0.00 2.32
281 282 7.516198 ACATCAAGTCTAACTCAGCAAATTT 57.484 32.000 0.00 0.00 0.00 1.82
282 283 7.516198 AACATCAAGTCTAACTCAGCAAATT 57.484 32.000 0.00 0.00 0.00 1.82
283 284 7.880195 AGTAACATCAAGTCTAACTCAGCAAAT 59.120 33.333 0.00 0.00 0.00 2.32
284 285 7.171508 CAGTAACATCAAGTCTAACTCAGCAAA 59.828 37.037 0.00 0.00 0.00 3.68
285 286 6.646653 CAGTAACATCAAGTCTAACTCAGCAA 59.353 38.462 0.00 0.00 0.00 3.91
286 287 6.159293 CAGTAACATCAAGTCTAACTCAGCA 58.841 40.000 0.00 0.00 0.00 4.41
287 288 5.062809 GCAGTAACATCAAGTCTAACTCAGC 59.937 44.000 0.00 0.00 0.00 4.26
288 289 5.578727 GGCAGTAACATCAAGTCTAACTCAG 59.421 44.000 0.00 0.00 0.00 3.35
289 290 5.479306 GGCAGTAACATCAAGTCTAACTCA 58.521 41.667 0.00 0.00 0.00 3.41
290 291 4.563184 CGGCAGTAACATCAAGTCTAACTC 59.437 45.833 0.00 0.00 0.00 3.01
291 292 4.219944 TCGGCAGTAACATCAAGTCTAACT 59.780 41.667 0.00 0.00 0.00 2.24
292 293 4.491676 TCGGCAGTAACATCAAGTCTAAC 58.508 43.478 0.00 0.00 0.00 2.34
293 294 4.794278 TCGGCAGTAACATCAAGTCTAA 57.206 40.909 0.00 0.00 0.00 2.10
294 295 4.219944 ACTTCGGCAGTAACATCAAGTCTA 59.780 41.667 0.00 0.00 31.97 2.59
295 296 3.006967 ACTTCGGCAGTAACATCAAGTCT 59.993 43.478 0.00 0.00 31.97 3.24
296 297 3.326747 ACTTCGGCAGTAACATCAAGTC 58.673 45.455 0.00 0.00 31.97 3.01
297 298 3.402628 ACTTCGGCAGTAACATCAAGT 57.597 42.857 0.00 0.00 31.97 3.16
298 299 4.929808 AGTAACTTCGGCAGTAACATCAAG 59.070 41.667 0.00 0.00 32.94 3.02
299 300 4.890088 AGTAACTTCGGCAGTAACATCAA 58.110 39.130 0.00 0.00 32.94 2.57
300 301 4.530710 AGTAACTTCGGCAGTAACATCA 57.469 40.909 0.00 0.00 32.94 3.07
301 302 5.407387 TGAAAGTAACTTCGGCAGTAACATC 59.593 40.000 0.00 0.00 32.94 3.06
302 303 5.302360 TGAAAGTAACTTCGGCAGTAACAT 58.698 37.500 0.00 0.00 32.94 2.71
303 304 4.695396 TGAAAGTAACTTCGGCAGTAACA 58.305 39.130 0.00 0.00 32.94 2.41
304 305 5.857822 ATGAAAGTAACTTCGGCAGTAAC 57.142 39.130 0.00 0.00 32.94 2.50
305 306 7.065324 CCATAATGAAAGTAACTTCGGCAGTAA 59.935 37.037 0.00 0.00 32.94 2.24
306 307 6.537301 CCATAATGAAAGTAACTTCGGCAGTA 59.463 38.462 0.00 0.00 32.94 2.74
307 308 5.354234 CCATAATGAAAGTAACTTCGGCAGT 59.646 40.000 0.00 0.00 37.30 4.40
308 309 5.730568 GCCATAATGAAAGTAACTTCGGCAG 60.731 44.000 0.00 0.00 31.13 4.85
309 310 4.095782 GCCATAATGAAAGTAACTTCGGCA 59.904 41.667 0.00 0.00 31.13 5.69
310 311 4.335594 AGCCATAATGAAAGTAACTTCGGC 59.664 41.667 0.00 0.00 30.98 5.54
311 312 6.761714 ACTAGCCATAATGAAAGTAACTTCGG 59.238 38.462 0.00 0.00 0.00 4.30
312 313 7.707035 AGACTAGCCATAATGAAAGTAACTTCG 59.293 37.037 0.00 0.00 0.00 3.79
313 314 8.950208 AGACTAGCCATAATGAAAGTAACTTC 57.050 34.615 0.00 0.00 0.00 3.01
317 318 9.832445 CCTTTAGACTAGCCATAATGAAAGTAA 57.168 33.333 0.00 0.00 0.00 2.24
318 319 8.989131 ACCTTTAGACTAGCCATAATGAAAGTA 58.011 33.333 0.00 0.00 0.00 2.24
319 320 7.862675 ACCTTTAGACTAGCCATAATGAAAGT 58.137 34.615 0.00 0.00 0.00 2.66
320 321 8.738645 AACCTTTAGACTAGCCATAATGAAAG 57.261 34.615 0.00 0.00 0.00 2.62
321 322 9.528489 AAAACCTTTAGACTAGCCATAATGAAA 57.472 29.630 0.00 0.00 0.00 2.69
322 323 9.528489 AAAAACCTTTAGACTAGCCATAATGAA 57.472 29.630 0.00 0.00 0.00 2.57
328 329 9.582648 TTCTTTAAAAACCTTTAGACTAGCCAT 57.417 29.630 0.00 0.00 0.00 4.40
329 330 8.983702 TTCTTTAAAAACCTTTAGACTAGCCA 57.016 30.769 0.00 0.00 0.00 4.75
331 332 9.756461 CGATTCTTTAAAAACCTTTAGACTAGC 57.244 33.333 0.00 0.00 0.00 3.42
333 334 8.724229 GCCGATTCTTTAAAAACCTTTAGACTA 58.276 33.333 0.00 0.00 0.00 2.59
334 335 7.309012 GGCCGATTCTTTAAAAACCTTTAGACT 60.309 37.037 0.00 0.00 0.00 3.24
335 336 6.805271 GGCCGATTCTTTAAAAACCTTTAGAC 59.195 38.462 0.00 0.00 0.00 2.59
336 337 6.490721 TGGCCGATTCTTTAAAAACCTTTAGA 59.509 34.615 0.00 0.00 0.00 2.10
337 338 6.683715 TGGCCGATTCTTTAAAAACCTTTAG 58.316 36.000 0.00 0.00 0.00 1.85
338 339 6.490721 TCTGGCCGATTCTTTAAAAACCTTTA 59.509 34.615 0.00 0.00 0.00 1.85
339 340 5.303333 TCTGGCCGATTCTTTAAAAACCTTT 59.697 36.000 0.00 0.00 0.00 3.11
340 341 4.830600 TCTGGCCGATTCTTTAAAAACCTT 59.169 37.500 0.00 0.00 0.00 3.50
341 342 4.403734 TCTGGCCGATTCTTTAAAAACCT 58.596 39.130 0.00 0.00 0.00 3.50
342 343 4.457949 TCTCTGGCCGATTCTTTAAAAACC 59.542 41.667 0.00 0.00 0.00 3.27
343 344 5.411669 TCTCTCTGGCCGATTCTTTAAAAAC 59.588 40.000 0.00 0.00 0.00 2.43
344 345 5.556915 TCTCTCTGGCCGATTCTTTAAAAA 58.443 37.500 0.00 0.00 0.00 1.94
345 346 5.160607 TCTCTCTGGCCGATTCTTTAAAA 57.839 39.130 0.00 0.00 0.00 1.52
346 347 4.223032 ACTCTCTCTGGCCGATTCTTTAAA 59.777 41.667 0.00 0.00 0.00 1.52
347 348 3.769844 ACTCTCTCTGGCCGATTCTTTAA 59.230 43.478 0.00 0.00 0.00 1.52
348 349 3.366396 ACTCTCTCTGGCCGATTCTTTA 58.634 45.455 0.00 0.00 0.00 1.85
349 350 2.167487 GACTCTCTCTGGCCGATTCTTT 59.833 50.000 0.00 0.00 0.00 2.52
350 351 1.754226 GACTCTCTCTGGCCGATTCTT 59.246 52.381 0.00 0.00 0.00 2.52
351 352 1.341482 TGACTCTCTCTGGCCGATTCT 60.341 52.381 0.00 0.00 0.00 2.40
352 353 1.107114 TGACTCTCTCTGGCCGATTC 58.893 55.000 0.00 0.00 0.00 2.52
353 354 1.686052 GATGACTCTCTCTGGCCGATT 59.314 52.381 0.00 0.00 0.00 3.34
354 355 1.133513 AGATGACTCTCTCTGGCCGAT 60.134 52.381 0.00 0.00 0.00 4.18
355 356 0.257328 AGATGACTCTCTCTGGCCGA 59.743 55.000 0.00 0.00 0.00 5.54
356 357 1.110442 AAGATGACTCTCTCTGGCCG 58.890 55.000 0.00 0.00 0.00 6.13
357 358 3.269178 CAAAAGATGACTCTCTCTGGCC 58.731 50.000 0.00 0.00 0.00 5.36
358 359 3.936564 ACAAAAGATGACTCTCTCTGGC 58.063 45.455 0.00 0.00 0.00 4.85
359 360 7.095017 GGTTTTACAAAAGATGACTCTCTCTGG 60.095 40.741 0.00 0.00 0.00 3.86
360 361 7.442364 TGGTTTTACAAAAGATGACTCTCTCTG 59.558 37.037 0.00 0.00 0.00 3.35
361 362 7.509546 TGGTTTTACAAAAGATGACTCTCTCT 58.490 34.615 0.00 0.00 0.00 3.10
362 363 7.730364 TGGTTTTACAAAAGATGACTCTCTC 57.270 36.000 0.00 0.00 0.00 3.20
363 364 7.993183 TCTTGGTTTTACAAAAGATGACTCTCT 59.007 33.333 0.00 0.00 0.00 3.10
364 365 8.070769 GTCTTGGTTTTACAAAAGATGACTCTC 58.929 37.037 0.00 0.00 31.73 3.20
365 366 7.556275 TGTCTTGGTTTTACAAAAGATGACTCT 59.444 33.333 0.00 0.00 31.73 3.24
366 367 7.703328 TGTCTTGGTTTTACAAAAGATGACTC 58.297 34.615 0.00 0.00 31.73 3.36
367 368 7.639113 TGTCTTGGTTTTACAAAAGATGACT 57.361 32.000 0.00 0.00 31.73 3.41
368 369 8.755018 CATTGTCTTGGTTTTACAAAAGATGAC 58.245 33.333 0.00 0.00 36.75 3.06
369 370 8.690884 TCATTGTCTTGGTTTTACAAAAGATGA 58.309 29.630 0.00 0.00 36.75 2.92
370 371 8.870160 TCATTGTCTTGGTTTTACAAAAGATG 57.130 30.769 0.00 0.00 36.75 2.90
371 372 8.695456 ACTCATTGTCTTGGTTTTACAAAAGAT 58.305 29.630 0.00 0.00 36.75 2.40
372 373 8.062065 ACTCATTGTCTTGGTTTTACAAAAGA 57.938 30.769 0.00 0.00 36.75 2.52
373 374 9.796120 TTACTCATTGTCTTGGTTTTACAAAAG 57.204 29.630 0.00 0.00 36.75 2.27
424 458 7.257722 CCTGTCAGAAAAGCTCAAAAGTAAAA 58.742 34.615 0.00 0.00 0.00 1.52
425 459 6.680378 GCCTGTCAGAAAAGCTCAAAAGTAAA 60.680 38.462 0.00 0.00 0.00 2.01
427 461 4.275936 GCCTGTCAGAAAAGCTCAAAAGTA 59.724 41.667 0.00 0.00 0.00 2.24
446 481 8.243426 TCTAATAAAAAGTTGTATGCAAGCCTG 58.757 33.333 0.00 0.00 34.94 4.85
525 797 1.540267 CTCCGTCGAGGTTTGAGAAGA 59.460 52.381 4.18 0.00 41.99 2.87
527 799 1.540267 CTCTCCGTCGAGGTTTGAGAA 59.460 52.381 11.80 0.74 41.99 2.87
582 854 1.145759 TATCGTGCACGCAGCTAAGC 61.146 55.000 33.63 0.00 45.94 3.09
583 855 0.572590 GTATCGTGCACGCAGCTAAG 59.427 55.000 33.63 6.04 45.94 2.18
615 887 8.043710 ACGATGAGAAGATATTCCAGAAACTTT 58.956 33.333 0.00 0.00 0.00 2.66
629 903 2.668457 GTGACGCAAACGATGAGAAGAT 59.332 45.455 0.00 0.00 43.93 2.40
675 953 2.071778 ACTTTGGCAAAGCTTCTGGA 57.928 45.000 33.69 1.05 42.27 3.86
679 957 4.122046 ACATGAAACTTTGGCAAAGCTTC 58.878 39.130 33.44 33.44 41.60 3.86
777 1058 4.492160 TCGCCCATGACGAGACGC 62.492 66.667 6.69 0.00 33.96 5.19
778 1059 2.579787 GTCGCCCATGACGAGACG 60.580 66.667 10.52 0.00 40.80 4.18
784 1065 2.581409 CGTACCGTCGCCCATGAC 60.581 66.667 0.00 0.00 35.49 3.06
816 1097 3.342627 TCCGTGAACTTTGCGCCG 61.343 61.111 4.18 0.00 0.00 6.46
817 1098 1.782028 AAGTCCGTGAACTTTGCGCC 61.782 55.000 4.18 0.00 36.02 6.53
818 1099 0.384353 GAAGTCCGTGAACTTTGCGC 60.384 55.000 0.00 0.00 39.55 6.09
819 1100 0.934496 TGAAGTCCGTGAACTTTGCG 59.066 50.000 0.00 0.00 39.55 4.85
820 1101 1.332904 CGTGAAGTCCGTGAACTTTGC 60.333 52.381 0.00 0.00 39.55 3.68
821 1102 1.931172 ACGTGAAGTCCGTGAACTTTG 59.069 47.619 0.00 0.00 39.55 2.77
822 1103 2.304751 ACGTGAAGTCCGTGAACTTT 57.695 45.000 0.00 0.00 39.55 2.66
829 1110 4.657824 CGGCCACGTGAAGTCCGT 62.658 66.667 19.30 0.00 36.02 4.69
848 1129 1.667830 CTACATACGGCCCATGCGG 60.668 63.158 11.11 2.29 43.00 5.69
849 1130 2.317609 GCTACATACGGCCCATGCG 61.318 63.158 11.11 5.13 38.85 4.73
850 1131 0.535102 AAGCTACATACGGCCCATGC 60.535 55.000 11.11 0.53 0.00 4.06
851 1132 1.229428 CAAGCTACATACGGCCCATG 58.771 55.000 9.87 9.87 0.00 3.66
852 1133 0.535102 GCAAGCTACATACGGCCCAT 60.535 55.000 0.00 0.00 0.00 4.00
853 1134 1.153249 GCAAGCTACATACGGCCCA 60.153 57.895 0.00 0.00 0.00 5.36
854 1135 0.391597 TAGCAAGCTACATACGGCCC 59.608 55.000 0.00 0.00 0.00 5.80
855 1136 1.340248 TCTAGCAAGCTACATACGGCC 59.660 52.381 0.00 0.00 0.00 6.13
856 1137 2.795175 TCTAGCAAGCTACATACGGC 57.205 50.000 0.00 0.00 0.00 5.68
857 1138 5.392165 GGACTATCTAGCAAGCTACATACGG 60.392 48.000 0.00 0.00 0.00 4.02
858 1139 5.181433 TGGACTATCTAGCAAGCTACATACG 59.819 44.000 0.00 0.00 0.00 3.06
859 1140 6.383415 GTGGACTATCTAGCAAGCTACATAC 58.617 44.000 0.00 0.00 0.00 2.39
860 1141 5.181433 CGTGGACTATCTAGCAAGCTACATA 59.819 44.000 0.00 0.00 0.00 2.29
861 1142 4.022762 CGTGGACTATCTAGCAAGCTACAT 60.023 45.833 0.00 0.00 0.00 2.29
862 1143 3.315470 CGTGGACTATCTAGCAAGCTACA 59.685 47.826 0.00 0.00 0.00 2.74
863 1144 3.304794 CCGTGGACTATCTAGCAAGCTAC 60.305 52.174 0.00 0.00 0.00 3.58
864 1145 2.885266 CCGTGGACTATCTAGCAAGCTA 59.115 50.000 1.37 1.37 0.00 3.32
865 1146 1.683917 CCGTGGACTATCTAGCAAGCT 59.316 52.381 0.00 0.00 0.00 3.74
866 1147 1.870167 GCCGTGGACTATCTAGCAAGC 60.870 57.143 0.00 0.00 0.00 4.01
867 1148 1.683917 AGCCGTGGACTATCTAGCAAG 59.316 52.381 0.00 0.00 0.00 4.01
868 1149 1.681793 GAGCCGTGGACTATCTAGCAA 59.318 52.381 0.00 0.00 0.00 3.91
869 1150 1.319541 GAGCCGTGGACTATCTAGCA 58.680 55.000 0.00 0.00 0.00 3.49
870 1151 0.599060 GGAGCCGTGGACTATCTAGC 59.401 60.000 0.00 0.00 0.00 3.42
871 1152 1.982660 TGGAGCCGTGGACTATCTAG 58.017 55.000 0.00 0.00 0.00 2.43
872 1153 2.239400 CATGGAGCCGTGGACTATCTA 58.761 52.381 0.63 0.00 0.00 1.98
873 1154 1.043816 CATGGAGCCGTGGACTATCT 58.956 55.000 0.63 0.00 0.00 1.98
874 1155 0.601311 GCATGGAGCCGTGGACTATC 60.601 60.000 10.53 0.00 37.23 2.08
875 1156 1.447643 GCATGGAGCCGTGGACTAT 59.552 57.895 10.53 0.00 37.23 2.12
876 1157 2.900273 GCATGGAGCCGTGGACTA 59.100 61.111 10.53 0.00 37.23 2.59
899 1180 2.123897 AGGTTTGTTGCGGCCAGT 60.124 55.556 2.24 0.00 0.00 4.00
935 1221 2.682494 GTGTAGCCGGGAGTGGGA 60.682 66.667 2.18 0.00 0.00 4.37
1053 1381 3.514546 CGCTGACGCTGTTTTTGC 58.485 55.556 0.00 0.00 0.00 3.68
1065 1397 1.284982 GCTTCTCTTGTTCGCGCTGA 61.285 55.000 5.56 1.08 0.00 4.26
1527 1928 0.927767 AGTAGTCCTCCTCGGATGGT 59.072 55.000 0.00 0.00 45.44 3.55
1735 2182 4.615834 CTCTCGCGGCTACTCGGC 62.616 72.222 6.13 0.00 37.63 5.54
1739 2186 3.827898 GCACCTCTCGCGGCTACT 61.828 66.667 6.13 0.00 0.00 2.57
1763 2216 0.032130 GATCTAACATCAGCGGCCGA 59.968 55.000 33.48 8.89 0.00 5.54
1953 2472 6.394025 TTTAAAAATAAGGGCACGAACAGT 57.606 33.333 0.00 0.00 0.00 3.55
1960 2479 6.183360 CGGAGCAAATTTAAAAATAAGGGCAC 60.183 38.462 0.00 0.00 0.00 5.01
2008 2529 4.208460 GGCTCTTTTTAAAACTTTCGCACC 59.792 41.667 0.00 0.00 0.00 5.01
2012 2533 6.040247 AGTTGGGCTCTTTTTAAAACTTTCG 58.960 36.000 0.00 0.00 0.00 3.46
2086 2607 7.541162 GGGTGTGTTAGTAACTTTGTTCTTTT 58.459 34.615 14.00 0.00 0.00 2.27
2087 2608 6.183360 CGGGTGTGTTAGTAACTTTGTTCTTT 60.183 38.462 14.00 0.00 0.00 2.52
2089 2610 4.812626 CGGGTGTGTTAGTAACTTTGTTCT 59.187 41.667 14.00 0.00 0.00 3.01
2090 2611 4.571984 ACGGGTGTGTTAGTAACTTTGTTC 59.428 41.667 14.00 0.26 0.00 3.18
2093 2614 5.049167 TGTACGGGTGTGTTAGTAACTTTG 58.951 41.667 14.00 1.74 0.00 2.77
2094 2615 5.275067 TGTACGGGTGTGTTAGTAACTTT 57.725 39.130 14.00 0.00 0.00 2.66
2095 2616 4.935352 TGTACGGGTGTGTTAGTAACTT 57.065 40.909 14.00 0.00 0.00 2.66
2096 2617 4.935352 TTGTACGGGTGTGTTAGTAACT 57.065 40.909 14.00 0.00 0.00 2.24
2097 2618 5.288804 TCTTTGTACGGGTGTGTTAGTAAC 58.711 41.667 6.06 6.06 0.00 2.50
2102 2650 5.021033 TCTTTCTTTGTACGGGTGTGTTA 57.979 39.130 0.00 0.00 0.00 2.41
2111 2659 8.294341 TGATTGTAGTTCTCTTTCTTTGTACG 57.706 34.615 0.00 0.00 0.00 3.67
2125 2673 6.863126 CACACCCAAGAAATTGATTGTAGTTC 59.137 38.462 3.10 0.00 0.00 3.01
2128 2676 5.163513 GCACACCCAAGAAATTGATTGTAG 58.836 41.667 3.10 0.00 0.00 2.74
2144 2692 4.905429 AGGAAAAATATTTTGGCACACCC 58.095 39.130 14.04 7.28 39.29 4.61
2161 2710 1.462616 CCAACGGATGCATGAGGAAA 58.537 50.000 2.46 0.00 0.00 3.13
2181 2730 3.281751 CTTTGCTCACGGCGTGTCG 62.282 63.158 35.65 27.71 45.43 4.35
2183 2732 3.649986 GCTTTGCTCACGGCGTGT 61.650 61.111 35.65 1.14 45.43 4.49
2185 2734 2.591715 AAGCTTTGCTCACGGCGT 60.592 55.556 6.77 6.77 45.43 5.68
2199 2748 0.960364 TCCCAAAGACGGCATCAAGC 60.960 55.000 0.00 0.00 44.65 4.01
2202 2751 2.091541 GAAATCCCAAAGACGGCATCA 58.908 47.619 0.00 0.00 0.00 3.07
2203 2752 1.064060 CGAAATCCCAAAGACGGCATC 59.936 52.381 0.00 0.00 0.00 3.91
2213 2762 1.073125 TCCACTGAAGCGAAATCCCAA 59.927 47.619 0.00 0.00 0.00 4.12
2217 2766 1.442769 TGCTCCACTGAAGCGAAATC 58.557 50.000 0.00 0.00 0.00 2.17
2218 2767 1.896220 TTGCTCCACTGAAGCGAAAT 58.104 45.000 0.00 0.00 0.00 2.17
2220 2769 0.944386 GTTTGCTCCACTGAAGCGAA 59.056 50.000 0.00 0.00 0.00 4.70
2221 2770 0.106708 AGTTTGCTCCACTGAAGCGA 59.893 50.000 0.00 0.00 0.00 4.93
2228 2777 4.709886 AGGTTTAAACAAGTTTGCTCCACT 59.290 37.500 19.57 0.47 34.23 4.00
2230 2779 6.603997 TCTTAGGTTTAAACAAGTTTGCTCCA 59.396 34.615 19.57 0.00 34.23 3.86
2251 2800 3.682718 GCCATTGCCTCTACAAGCTCTTA 60.683 47.826 0.00 0.00 31.96 2.10
2256 2805 0.737219 CAGCCATTGCCTCTACAAGC 59.263 55.000 0.00 0.00 38.69 4.01
2265 2814 1.244019 ACGACTTTCCAGCCATTGCC 61.244 55.000 0.00 0.00 38.69 4.52
2267 2816 1.522668 TGACGACTTTCCAGCCATTG 58.477 50.000 0.00 0.00 0.00 2.82
2269 2818 1.880027 GTTTGACGACTTTCCAGCCAT 59.120 47.619 0.00 0.00 0.00 4.40
2274 2823 3.869246 GTCTTCTGTTTGACGACTTTCCA 59.131 43.478 0.00 0.00 39.82 3.53
2283 2832 1.452399 GTCTCGCGTCTTCTGTTTGAC 59.548 52.381 5.77 0.00 0.00 3.18
2286 2835 1.337071 TCAGTCTCGCGTCTTCTGTTT 59.663 47.619 5.77 0.00 0.00 2.83
2288 2837 1.135546 CATCAGTCTCGCGTCTTCTGT 60.136 52.381 5.77 0.45 0.00 3.41
2289 2838 1.131315 TCATCAGTCTCGCGTCTTCTG 59.869 52.381 5.77 11.03 0.00 3.02
2290 2839 1.454201 TCATCAGTCTCGCGTCTTCT 58.546 50.000 5.77 0.00 0.00 2.85
2291 2840 2.181205 CTTCATCAGTCTCGCGTCTTC 58.819 52.381 5.77 0.00 0.00 2.87
2292 2841 1.542030 ACTTCATCAGTCTCGCGTCTT 59.458 47.619 5.77 0.00 0.00 3.01
2294 2843 2.826979 TACTTCATCAGTCTCGCGTC 57.173 50.000 5.77 0.00 36.88 5.19
2295 2844 2.423892 ACATACTTCATCAGTCTCGCGT 59.576 45.455 5.77 0.00 36.88 6.01
2296 2845 2.786027 CACATACTTCATCAGTCTCGCG 59.214 50.000 0.00 0.00 36.88 5.87
2298 2847 4.142381 TGGTCACATACTTCATCAGTCTCG 60.142 45.833 0.00 0.00 36.88 4.04
2299 2848 5.330455 TGGTCACATACTTCATCAGTCTC 57.670 43.478 0.00 0.00 36.88 3.36
2300 2849 5.481824 TCTTGGTCACATACTTCATCAGTCT 59.518 40.000 0.00 0.00 36.88 3.24
2301 2850 5.724328 TCTTGGTCACATACTTCATCAGTC 58.276 41.667 0.00 0.00 36.88 3.51
2306 2864 6.053632 TGACATCTTGGTCACATACTTCAT 57.946 37.500 0.00 0.00 42.56 2.57
2368 2926 5.774630 CCAAAATCGTTTAGTTTTAGGCCA 58.225 37.500 5.01 0.00 0.00 5.36
2373 2931 8.928270 TTCTTTGCCAAAATCGTTTAGTTTTA 57.072 26.923 0.00 0.00 0.00 1.52
2402 2960 6.541111 ACCGATCTGTTGAACTTAACTTTC 57.459 37.500 0.00 0.00 0.00 2.62
2403 2961 7.929785 TCTTACCGATCTGTTGAACTTAACTTT 59.070 33.333 0.00 0.00 0.00 2.66
2408 2966 6.364165 CGTTTCTTACCGATCTGTTGAACTTA 59.636 38.462 0.00 0.00 0.00 2.24
2417 2975 2.004583 TGCCGTTTCTTACCGATCTG 57.995 50.000 0.00 0.00 0.00 2.90
2418 2976 2.754946 TTGCCGTTTCTTACCGATCT 57.245 45.000 0.00 0.00 0.00 2.75
2422 2980 7.007313 TCTAAAATATTGCCGTTTCTTACCG 57.993 36.000 0.00 0.00 0.00 4.02
2426 2984 6.318900 CCTCCTCTAAAATATTGCCGTTTCTT 59.681 38.462 0.00 0.00 0.00 2.52
2459 3017 8.749026 ATACGACTGAGTATCTTTTAGAGGAA 57.251 34.615 0.00 0.00 32.27 3.36
2479 3037 8.396388 TCCCCTATAATTTAGAGAAGGATACGA 58.604 37.037 0.00 0.00 46.39 3.43
2511 3074 7.573843 GCACTCTAAGAAACTAAATGCATGTGT 60.574 37.037 0.00 0.00 0.00 3.72
2519 3082 5.940470 CACCCAGCACTCTAAGAAACTAAAT 59.060 40.000 0.00 0.00 0.00 1.40
2520 3083 5.071250 TCACCCAGCACTCTAAGAAACTAAA 59.929 40.000 0.00 0.00 0.00 1.85
2523 3086 2.972713 TCACCCAGCACTCTAAGAAACT 59.027 45.455 0.00 0.00 0.00 2.66
2550 3113 0.392998 ATTTCTACCACGGCCAGCAG 60.393 55.000 2.24 0.00 0.00 4.24
2581 3144 3.426560 GGCGTTTAAATTAACAGTCCCCG 60.427 47.826 0.00 0.00 0.00 5.73
2582 3145 3.506844 TGGCGTTTAAATTAACAGTCCCC 59.493 43.478 0.00 0.00 0.00 4.81
2585 3148 8.632551 GTGTTTATGGCGTTTAAATTAACAGTC 58.367 33.333 0.00 0.00 0.00 3.51
2587 3150 7.534578 TCGTGTTTATGGCGTTTAAATTAACAG 59.465 33.333 0.00 0.00 0.00 3.16
2602 3165 3.727673 CGTGCATTTCCTCGTGTTTATGG 60.728 47.826 0.00 0.00 0.00 2.74
2604 3167 3.071479 ACGTGCATTTCCTCGTGTTTAT 58.929 40.909 0.00 0.00 35.24 1.40
2605 3168 2.485903 ACGTGCATTTCCTCGTGTTTA 58.514 42.857 0.00 0.00 35.24 2.01
2632 3196 5.914635 CGGGTGCAATATTCACAATACATTC 59.085 40.000 15.37 1.88 36.22 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.