Multiple sequence alignment - TraesCS5A01G403200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G403200 chr5A 100.000 3527 0 0 1 3527 595543563 595540037 0.000000e+00 6514.0
1 TraesCS5A01G403200 chr5A 89.180 305 30 1 3186 3490 580927792 580928093 9.240000e-101 377.0
2 TraesCS5A01G403200 chr5D 93.249 2755 120 25 8 2734 476159882 476157166 0.000000e+00 3997.0
3 TraesCS5A01G403200 chr5D 90.732 410 19 12 1812 2221 286180270 286180660 2.410000e-146 529.0
4 TraesCS5A01G403200 chr5D 88.293 410 17 16 1812 2221 563675488 563675110 2.480000e-126 462.0
5 TraesCS5A01G403200 chr5D 89.542 306 29 1 3188 3493 135516961 135516659 5.520000e-103 385.0
6 TraesCS5A01G403200 chr5D 89.103 312 28 4 3185 3493 430532392 430532084 1.990000e-102 383.0
7 TraesCS5A01G403200 chr5D 92.562 242 11 3 2738 2973 476157124 476156884 1.210000e-89 340.0
8 TraesCS5A01G403200 chr5D 88.400 250 18 2 955 1203 286178181 286178420 1.240000e-74 291.0
9 TraesCS5A01G403200 chr5D 88.824 170 9 3 1590 1751 286180102 286180269 2.150000e-47 200.0
10 TraesCS5A01G403200 chr5D 94.068 118 7 0 1086 1203 563677447 563677330 2.800000e-41 180.0
11 TraesCS5A01G403200 chr5D 87.273 110 4 3 1650 1751 563675596 563675489 2.220000e-22 117.0
12 TraesCS5A01G403200 chr5D 95.918 49 2 0 1229 1277 286178418 286178466 2.920000e-11 80.5
13 TraesCS5A01G403200 chr5D 97.561 41 1 0 3487 3527 224763459 224763499 1.760000e-08 71.3
14 TraesCS5A01G403200 chr5D 97.059 34 1 0 3049 3082 476156626 476156593 1.370000e-04 58.4
15 TraesCS5A01G403200 chr5B 91.199 2761 142 42 27 2702 583580467 583577723 0.000000e+00 3659.0
16 TraesCS5A01G403200 chr5B 89.723 253 15 7 2738 2979 583577650 583577398 2.640000e-81 313.0
17 TraesCS5A01G403200 chr5B 79.657 408 76 7 86 490 338935198 338934795 1.600000e-73 287.0
18 TraesCS5A01G403200 chr5B 97.561 41 1 0 3487 3527 448292800 448292840 1.760000e-08 71.3
19 TraesCS5A01G403200 chr5B 97.561 41 1 0 3487 3527 513972481 513972441 1.760000e-08 71.3
20 TraesCS5A01G403200 chr6B 88.000 900 64 13 1322 2201 615309139 615310014 0.000000e+00 1024.0
21 TraesCS5A01G403200 chr6B 78.142 366 34 20 956 1318 615295645 615295967 1.290000e-44 191.0
22 TraesCS5A01G403200 chr7D 90.732 410 19 12 1812 2221 529583687 529583297 2.410000e-146 529.0
23 TraesCS5A01G403200 chr7D 89.068 311 30 2 3180 3490 488802338 488802644 1.990000e-102 383.0
24 TraesCS5A01G403200 chr7D 89.216 306 31 2 3186 3490 607547687 607547991 7.140000e-102 381.0
25 TraesCS5A01G403200 chr7D 88.889 306 34 0 3188 3493 397378106 397377801 9.240000e-101 377.0
26 TraesCS5A01G403200 chr7D 88.000 250 19 2 955 1203 529585900 529585661 5.760000e-73 285.0
27 TraesCS5A01G403200 chr7D 88.182 110 3 3 1650 1751 529583795 529583688 4.780000e-24 122.0
28 TraesCS5A01G403200 chr7D 95.918 49 2 0 1229 1277 529585663 529585615 2.920000e-11 80.5
29 TraesCS5A01G403200 chr2A 90.488 410 20 12 1812 2221 102426203 102425813 1.120000e-144 523.0
30 TraesCS5A01G403200 chr2A 79.535 430 78 7 63 490 95261554 95261133 7.400000e-77 298.0
31 TraesCS5A01G403200 chr2A 88.000 250 19 2 955 1203 102428278 102428039 5.760000e-73 285.0
32 TraesCS5A01G403200 chr2A 87.273 110 4 3 1650 1751 102426311 102426204 2.220000e-22 117.0
33 TraesCS5A01G403200 chr2A 95.918 49 2 0 1229 1277 102428041 102427993 2.920000e-11 80.5
34 TraesCS5A01G403200 chr3A 90.244 410 21 11 1812 2221 572018860 572018470 5.220000e-143 518.0
35 TraesCS5A01G403200 chr3A 81.532 444 62 18 57 491 568448497 568448929 7.250000e-92 348.0
36 TraesCS5A01G403200 chr3A 87.861 173 8 5 1590 1751 572019031 572018861 1.290000e-44 191.0
37 TraesCS5A01G403200 chr3A 92.174 115 8 1 1090 1203 572026363 572026249 1.010000e-35 161.0
38 TraesCS5A01G403200 chr3A 100.000 28 0 0 1250 1277 572020698 572020671 6.000000e-03 52.8
39 TraesCS5A01G403200 chr2D 89.756 410 23 12 1812 2221 37310702 37310312 1.130000e-139 507.0
40 TraesCS5A01G403200 chr2D 90.429 303 27 2 3188 3490 367987232 367987532 7.090000e-107 398.0
41 TraesCS5A01G403200 chr2D 87.967 241 19 1 963 1203 37312512 37312282 3.470000e-70 276.0
42 TraesCS5A01G403200 chr2D 95.918 49 2 0 1229 1277 37312284 37312236 2.920000e-11 80.5
43 TraesCS5A01G403200 chr2D 97.561 41 1 0 3487 3527 71452595 71452555 1.760000e-08 71.3
44 TraesCS5A01G403200 chr2D 97.561 41 1 0 3487 3527 322500583 322500543 1.760000e-08 71.3
45 TraesCS5A01G403200 chr2D 97.561 41 1 0 3487 3527 572355741 572355701 1.760000e-08 71.3
46 TraesCS5A01G403200 chr6A 89.286 308 33 0 3183 3490 68503456 68503763 1.540000e-103 387.0
47 TraesCS5A01G403200 chr6A 97.561 41 1 0 3487 3527 573458310 573458350 1.760000e-08 71.3
48 TraesCS5A01G403200 chr1D 89.180 305 32 1 3189 3493 236080397 236080094 2.570000e-101 379.0
49 TraesCS5A01G403200 chr4D 83.284 341 49 8 105 441 88081614 88081278 1.230000e-79 307.0
50 TraesCS5A01G403200 chr7B 80.535 411 67 10 57 465 511942521 511942122 1.590000e-78 303.0
51 TraesCS5A01G403200 chr1B 78.161 435 83 11 62 490 16481897 16481469 2.090000e-67 267.0
52 TraesCS5A01G403200 chr1B 78.153 444 74 19 58 490 16653799 16653368 9.710000e-66 261.0
53 TraesCS5A01G403200 chr1A 97.561 41 1 0 3487 3527 520511367 520511407 1.760000e-08 71.3
54 TraesCS5A01G403200 chr1A 97.561 41 1 0 3487 3527 547861673 547861633 1.760000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G403200 chr5A 595540037 595543563 3526 True 6514.000000 6514 100.000000 1 3527 1 chr5A.!!$R1 3526
1 TraesCS5A01G403200 chr5D 476156593 476159882 3289 True 1465.133333 3997 94.290000 8 3082 3 chr5D.!!$R3 3074
2 TraesCS5A01G403200 chr5D 286178181 286180660 2479 False 275.125000 529 90.968500 955 2221 4 chr5D.!!$F2 1266
3 TraesCS5A01G403200 chr5D 563675110 563677447 2337 True 253.000000 462 89.878000 1086 2221 3 chr5D.!!$R4 1135
4 TraesCS5A01G403200 chr5B 583577398 583580467 3069 True 1986.000000 3659 90.461000 27 2979 2 chr5B.!!$R3 2952
5 TraesCS5A01G403200 chr6B 615309139 615310014 875 False 1024.000000 1024 88.000000 1322 2201 1 chr6B.!!$F2 879
6 TraesCS5A01G403200 chr7D 529583297 529585900 2603 True 254.125000 529 90.708000 955 2221 4 chr7D.!!$R2 1266
7 TraesCS5A01G403200 chr2A 102425813 102428278 2465 True 251.375000 523 90.419750 955 2221 4 chr2A.!!$R2 1266
8 TraesCS5A01G403200 chr3A 572018470 572020698 2228 True 253.933333 518 92.701667 1250 2221 3 chr3A.!!$R2 971
9 TraesCS5A01G403200 chr2D 37310312 37312512 2200 True 287.833333 507 91.213667 963 2221 3 chr2D.!!$R4 1258

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
595 626 0.250124 AATCCGTTGACTTGTCCGCA 60.25 50.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2530 4153 1.425412 AATGAAGTACACGTGGCGAC 58.575 50.0 21.57 14.36 0.0 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 49 6.682423 TTGATTGAACGATCTACATGCATT 57.318 33.333 0.00 0.00 0.00 3.56
83 84 1.877443 GATTTGTGGCACGTAGGTGTT 59.123 47.619 16.36 0.00 46.13 3.32
112 113 0.674895 AGGTCCTCATGCGTGCTTTC 60.675 55.000 0.00 0.00 0.00 2.62
126 128 4.545610 CGTGCTTTCATTTTTGGCTTCTA 58.454 39.130 0.00 0.00 0.00 2.10
137 139 9.612066 TCATTTTTGGCTTCTAATTTTCAAACT 57.388 25.926 0.00 0.00 0.00 2.66
203 205 7.084486 TCATATTCGTATTTCTCATGACGAGG 58.916 38.462 5.40 0.00 44.32 4.63
209 211 3.973206 TTTCTCATGACGAGGGCTTTA 57.027 42.857 0.00 0.00 42.55 1.85
325 329 4.582701 TGATTTTTGTGCCTACAACTGG 57.417 40.909 0.00 0.00 45.91 4.00
370 377 8.732746 TTTATCTATCAAACTTGGTAAGAGCC 57.267 34.615 0.00 0.00 0.00 4.70
374 381 2.158682 TCAAACTTGGTAAGAGCCAGCA 60.159 45.455 0.00 0.00 40.01 4.41
381 388 3.766545 TGGTAAGAGCCAGCAAGAAAAT 58.233 40.909 0.00 0.00 33.97 1.82
390 397 3.737774 GCCAGCAAGAAAATCACAAGTTC 59.262 43.478 0.00 0.00 0.00 3.01
391 398 4.737352 GCCAGCAAGAAAATCACAAGTTCA 60.737 41.667 0.00 0.00 0.00 3.18
393 400 5.811613 CCAGCAAGAAAATCACAAGTTCAAA 59.188 36.000 0.00 0.00 0.00 2.69
396 403 7.849026 CAGCAAGAAAATCACAAGTTCAAAATG 59.151 33.333 0.00 0.00 0.00 2.32
465 472 3.283751 TCGTGTGGGATTCAACAACTTT 58.716 40.909 0.00 0.00 0.00 2.66
466 473 3.066064 TCGTGTGGGATTCAACAACTTTG 59.934 43.478 0.00 0.00 0.00 2.77
468 475 2.762887 TGTGGGATTCAACAACTTTGCA 59.237 40.909 0.00 0.00 0.00 4.08
483 491 3.069872 ACTTTGCAAATGTGAGGCAATCA 59.930 39.130 13.23 0.00 45.81 2.57
490 498 2.033911 TGAGGCAATCAAGCGGCA 59.966 55.556 1.45 0.00 34.02 5.69
491 499 2.334946 TGAGGCAATCAAGCGGCAC 61.335 57.895 1.45 0.00 34.02 5.01
492 500 2.282391 AGGCAATCAAGCGGCACA 60.282 55.556 1.45 0.00 34.64 4.57
528 559 6.942886 TTTTCGATGCATTTGTATGGTTTC 57.057 33.333 0.00 0.00 32.15 2.78
548 579 6.303259 GGTTTCGAGATCTTTGAAAATGAACG 59.697 38.462 19.61 5.87 40.13 3.95
564 595 3.732892 CGCGACGGTTGCCCAAAT 61.733 61.111 14.53 0.00 0.00 2.32
566 597 2.622011 GCGACGGTTGCCCAAATGA 61.622 57.895 9.28 0.00 0.00 2.57
580 611 3.618150 CCCAAATGAACAAATGCGAATCC 59.382 43.478 0.00 0.00 0.00 3.01
595 626 0.250124 AATCCGTTGACTTGTCCGCA 60.250 50.000 0.00 0.00 0.00 5.69
619 650 2.351835 CGCCTTCCGATACATCTACCAG 60.352 54.545 0.00 0.00 40.02 4.00
623 655 4.462834 CCTTCCGATACATCTACCAGCATA 59.537 45.833 0.00 0.00 0.00 3.14
655 696 8.212312 AGATCAATTAGTCAAATGATGCTCTCT 58.788 33.333 0.00 0.00 0.00 3.10
735 776 2.032799 CGGAAGCTGCTCTACTCTACTG 59.967 54.545 1.00 0.00 0.00 2.74
736 777 3.283751 GGAAGCTGCTCTACTCTACTGA 58.716 50.000 1.00 0.00 0.00 3.41
737 778 3.888930 GGAAGCTGCTCTACTCTACTGAT 59.111 47.826 1.00 0.00 0.00 2.90
738 779 4.023193 GGAAGCTGCTCTACTCTACTGATC 60.023 50.000 1.00 0.00 0.00 2.92
739 780 4.437682 AGCTGCTCTACTCTACTGATCT 57.562 45.455 0.00 0.00 0.00 2.75
740 781 5.560722 AGCTGCTCTACTCTACTGATCTA 57.439 43.478 0.00 0.00 0.00 1.98
741 782 5.305585 AGCTGCTCTACTCTACTGATCTAC 58.694 45.833 0.00 0.00 0.00 2.59
742 783 5.071788 AGCTGCTCTACTCTACTGATCTACT 59.928 44.000 0.00 0.00 0.00 2.57
900 941 1.073177 CACCCGAACCGTGTCATTAC 58.927 55.000 0.00 0.00 0.00 1.89
942 983 2.049185 ACACGGCACACCAAAAGCA 61.049 52.632 0.00 0.00 34.57 3.91
943 984 1.299316 CACGGCACACCAAAAGCAG 60.299 57.895 0.00 0.00 34.57 4.24
944 985 2.355009 CGGCACACCAAAAGCAGC 60.355 61.111 0.00 0.00 34.57 5.25
945 986 2.813901 GGCACACCAAAAGCAGCA 59.186 55.556 0.00 0.00 35.26 4.41
946 987 1.300388 GGCACACCAAAAGCAGCAG 60.300 57.895 0.00 0.00 35.26 4.24
947 988 1.952635 GCACACCAAAAGCAGCAGC 60.953 57.895 0.00 0.00 42.56 5.25
951 992 2.048503 CCAAAAGCAGCAGCAGCC 60.049 61.111 6.10 0.00 45.49 4.85
1010 1090 0.820074 TCAAACCAAATGGCGACGGT 60.820 50.000 0.00 0.00 39.32 4.83
1012 1092 2.414840 AAACCAAATGGCGACGGTGC 62.415 55.000 0.00 0.00 39.32 5.01
1014 1094 2.625823 CCAAATGGCGACGGTGCTT 61.626 57.895 0.00 0.00 34.52 3.91
1881 3492 3.686045 GAGGGCGAGCGGATAGGG 61.686 72.222 0.00 0.00 0.00 3.53
2295 3918 2.642254 CGTGCCCGACAGGTTCCTA 61.642 63.158 0.00 0.00 38.26 2.94
2298 3921 2.732619 GCCCGACAGGTTCCTAGGG 61.733 68.421 9.46 16.54 41.65 3.53
2546 4169 3.444642 CGTCGCCACGTGTACTTC 58.555 61.111 15.65 0.15 41.42 3.01
2547 4170 1.370778 CGTCGCCACGTGTACTTCA 60.371 57.895 15.65 0.00 41.42 3.02
2551 4176 2.063266 TCGCCACGTGTACTTCATTTC 58.937 47.619 15.65 0.00 0.00 2.17
2577 4202 0.230769 GCTTTTCTCGATCGATGCCG 59.769 55.000 19.78 7.03 37.07 5.69
2578 4203 0.230769 CTTTTCTCGATCGATGCCGC 59.769 55.000 19.78 0.00 35.37 6.53
2583 4208 0.727457 CTCGATCGATGCCGCTACTG 60.727 60.000 19.78 0.00 35.37 2.74
2616 4241 4.466015 TGTGATACTACACTTGCATGGAGA 59.534 41.667 6.54 0.00 40.87 3.71
2633 4259 5.344743 TGGAGAGATGAGGATTTGTGTAC 57.655 43.478 0.00 0.00 0.00 2.90
2637 4263 5.738909 AGAGATGAGGATTTGTGTACCAAG 58.261 41.667 0.00 0.00 33.75 3.61
2690 4317 3.706373 CCCAGGGACCTCGGTGTG 61.706 72.222 0.00 0.00 0.00 3.82
2716 4349 7.230849 TGAGATGTTTTTGCCAATTAGTCAT 57.769 32.000 0.00 0.00 0.00 3.06
2717 4350 7.315142 TGAGATGTTTTTGCCAATTAGTCATC 58.685 34.615 0.00 0.00 0.00 2.92
2718 4351 7.039853 TGAGATGTTTTTGCCAATTAGTCATCA 60.040 33.333 0.00 0.00 33.83 3.07
2736 4369 1.202330 CAGTGAGATGAAGGGGAGCT 58.798 55.000 0.00 0.00 0.00 4.09
2740 4412 0.915364 GAGATGAAGGGGAGCTGGTT 59.085 55.000 0.00 0.00 0.00 3.67
2751 4423 2.521708 GCTGGTTGGTTGGTGGCT 60.522 61.111 0.00 0.00 0.00 4.75
2757 4429 0.673985 GTTGGTTGGTGGCTCTTTCC 59.326 55.000 0.00 0.00 0.00 3.13
2796 4469 6.694445 AGATTCTAAAGTAGATGGATGGGG 57.306 41.667 0.00 0.00 34.22 4.96
2851 4526 9.920946 GCTATTATTAAATTAGATGGATGGGGA 57.079 33.333 0.00 0.00 0.00 4.81
2892 4568 2.861147 AACAGCAAACCTACCTCCTC 57.139 50.000 0.00 0.00 0.00 3.71
2904 4580 0.909610 ACCTCCTCGGCTCCATTTCA 60.910 55.000 0.00 0.00 35.61 2.69
2919 4595 7.388437 GCTCCATTTCATTCTCTCTATGATCT 58.612 38.462 0.00 0.00 32.43 2.75
2973 4663 2.165998 GGGCTTGCAAAAGTCTGATCT 58.834 47.619 0.00 0.00 0.00 2.75
2982 4829 7.750229 TGCAAAAGTCTGATCTTCAAATACT 57.250 32.000 0.00 0.00 0.00 2.12
2983 4830 7.810658 TGCAAAAGTCTGATCTTCAAATACTC 58.189 34.615 0.00 0.00 0.00 2.59
2994 4841 7.862372 TGATCTTCAAATACTCTTTTGTGTTGC 59.138 33.333 0.00 0.00 37.73 4.17
2996 4843 7.542890 TCTTCAAATACTCTTTTGTGTTGCAA 58.457 30.769 0.00 0.00 37.73 4.08
3009 4856 2.287644 GTGTTGCAAAATGAAGCCCAAC 59.712 45.455 0.00 0.00 34.68 3.77
3010 4857 1.526464 GTTGCAAAATGAAGCCCAACG 59.474 47.619 0.00 0.00 0.00 4.10
3011 4858 1.035923 TGCAAAATGAAGCCCAACGA 58.964 45.000 0.00 0.00 0.00 3.85
3012 4859 1.410517 TGCAAAATGAAGCCCAACGAA 59.589 42.857 0.00 0.00 0.00 3.85
3014 4861 2.220824 GCAAAATGAAGCCCAACGAAAC 59.779 45.455 0.00 0.00 0.00 2.78
3017 4864 0.178975 ATGAAGCCCAACGAAACCCA 60.179 50.000 0.00 0.00 0.00 4.51
3018 4865 0.821711 TGAAGCCCAACGAAACCCAG 60.822 55.000 0.00 0.00 0.00 4.45
3019 4866 2.142357 GAAGCCCAACGAAACCCAGC 62.142 60.000 0.00 0.00 0.00 4.85
3020 4867 3.680786 GCCCAACGAAACCCAGCC 61.681 66.667 0.00 0.00 0.00 4.85
3021 4868 2.989253 CCCAACGAAACCCAGCCC 60.989 66.667 0.00 0.00 0.00 5.19
3046 4893 3.373226 CGAGAAGGGTTCGGGTCA 58.627 61.111 0.00 0.00 34.56 4.02
3047 4894 1.669440 CGAGAAGGGTTCGGGTCAA 59.331 57.895 0.00 0.00 34.56 3.18
3078 4950 1.553706 TCAGGTTTACTCTCGGGTCC 58.446 55.000 0.00 0.00 0.00 4.46
3082 4954 1.653151 GTTTACTCTCGGGTCCATGC 58.347 55.000 0.00 0.00 0.00 4.06
3083 4955 1.207329 GTTTACTCTCGGGTCCATGCT 59.793 52.381 0.00 0.00 0.00 3.79
3084 4956 2.429610 GTTTACTCTCGGGTCCATGCTA 59.570 50.000 0.00 0.00 0.00 3.49
3085 4957 2.677542 TACTCTCGGGTCCATGCTAT 57.322 50.000 0.00 0.00 0.00 2.97
3086 4958 1.043816 ACTCTCGGGTCCATGCTATG 58.956 55.000 0.00 0.00 0.00 2.23
3117 4989 4.668138 TTTTTAAGCCTGGTGGTCCTAT 57.332 40.909 0.00 0.00 35.27 2.57
3118 4990 4.668138 TTTTAAGCCTGGTGGTCCTATT 57.332 40.909 0.00 0.00 35.27 1.73
3119 4991 3.644966 TTAAGCCTGGTGGTCCTATTG 57.355 47.619 0.00 0.00 35.27 1.90
3120 4992 0.034089 AAGCCTGGTGGTCCTATTGC 60.034 55.000 0.00 0.00 35.27 3.56
3121 4993 0.916358 AGCCTGGTGGTCCTATTGCT 60.916 55.000 0.00 0.00 35.27 3.91
3122 4994 0.034089 GCCTGGTGGTCCTATTGCTT 60.034 55.000 0.00 0.00 35.27 3.91
3123 4995 1.211949 GCCTGGTGGTCCTATTGCTTA 59.788 52.381 0.00 0.00 35.27 3.09
3124 4996 2.746472 GCCTGGTGGTCCTATTGCTTAG 60.746 54.545 0.00 0.00 35.27 2.18
3125 4997 2.505819 CCTGGTGGTCCTATTGCTTAGT 59.494 50.000 0.00 0.00 34.23 2.24
3126 4998 3.054361 CCTGGTGGTCCTATTGCTTAGTT 60.054 47.826 0.00 0.00 34.23 2.24
3127 4999 4.163458 CCTGGTGGTCCTATTGCTTAGTTA 59.837 45.833 0.00 0.00 34.23 2.24
3128 5000 5.338871 CCTGGTGGTCCTATTGCTTAGTTAA 60.339 44.000 0.00 0.00 34.23 2.01
3129 5001 6.129414 TGGTGGTCCTATTGCTTAGTTAAA 57.871 37.500 0.00 0.00 34.23 1.52
3130 5002 6.727394 TGGTGGTCCTATTGCTTAGTTAAAT 58.273 36.000 0.00 0.00 34.23 1.40
3131 5003 7.179269 TGGTGGTCCTATTGCTTAGTTAAATT 58.821 34.615 0.00 0.00 34.23 1.82
3132 5004 7.122055 TGGTGGTCCTATTGCTTAGTTAAATTG 59.878 37.037 0.00 0.00 34.23 2.32
3133 5005 7.416326 GGTGGTCCTATTGCTTAGTTAAATTGG 60.416 40.741 0.00 0.00 0.00 3.16
3134 5006 7.338449 GTGGTCCTATTGCTTAGTTAAATTGGA 59.662 37.037 0.00 0.00 34.31 3.53
3135 5007 7.338449 TGGTCCTATTGCTTAGTTAAATTGGAC 59.662 37.037 18.90 18.90 46.49 4.02
3136 5008 7.556635 GGTCCTATTGCTTAGTTAAATTGGACT 59.443 37.037 22.39 1.72 46.46 3.85
3137 5009 8.957466 GTCCTATTGCTTAGTTAAATTGGACTT 58.043 33.333 19.36 0.00 45.13 3.01
3138 5010 8.956426 TCCTATTGCTTAGTTAAATTGGACTTG 58.044 33.333 0.00 0.00 32.59 3.16
3139 5011 8.190784 CCTATTGCTTAGTTAAATTGGACTTGG 58.809 37.037 0.00 0.00 30.61 3.61
3140 5012 6.969993 TTGCTTAGTTAAATTGGACTTGGT 57.030 33.333 0.00 0.00 0.00 3.67
3141 5013 8.644374 ATTGCTTAGTTAAATTGGACTTGGTA 57.356 30.769 0.00 0.00 0.00 3.25
3142 5014 8.466617 TTGCTTAGTTAAATTGGACTTGGTAA 57.533 30.769 0.00 0.00 0.00 2.85
3143 5015 7.878036 TGCTTAGTTAAATTGGACTTGGTAAC 58.122 34.615 0.00 0.00 0.00 2.50
3159 5031 4.400036 GGTAACAACCGAACATCAACTC 57.600 45.455 0.00 0.00 0.00 3.01
3160 5032 3.120786 GGTAACAACCGAACATCAACTCG 60.121 47.826 0.00 0.00 34.83 4.18
3161 5033 0.865769 ACAACCGAACATCAACTCGC 59.134 50.000 0.00 0.00 33.70 5.03
3162 5034 0.865111 CAACCGAACATCAACTCGCA 59.135 50.000 0.00 0.00 33.70 5.10
3163 5035 0.865769 AACCGAACATCAACTCGCAC 59.134 50.000 0.00 0.00 33.70 5.34
3164 5036 0.949105 ACCGAACATCAACTCGCACC 60.949 55.000 0.00 0.00 33.70 5.01
3165 5037 0.670546 CCGAACATCAACTCGCACCT 60.671 55.000 0.00 0.00 33.70 4.00
3166 5038 1.148310 CGAACATCAACTCGCACCTT 58.852 50.000 0.00 0.00 0.00 3.50
3167 5039 1.126846 CGAACATCAACTCGCACCTTC 59.873 52.381 0.00 0.00 0.00 3.46
3168 5040 2.417719 GAACATCAACTCGCACCTTCT 58.582 47.619 0.00 0.00 0.00 2.85
3169 5041 2.086054 ACATCAACTCGCACCTTCTC 57.914 50.000 0.00 0.00 0.00 2.87
3170 5042 0.994995 CATCAACTCGCACCTTCTCG 59.005 55.000 0.00 0.00 0.00 4.04
3171 5043 0.603569 ATCAACTCGCACCTTCTCGT 59.396 50.000 0.00 0.00 0.00 4.18
3172 5044 1.241165 TCAACTCGCACCTTCTCGTA 58.759 50.000 0.00 0.00 0.00 3.43
3173 5045 1.610038 TCAACTCGCACCTTCTCGTAA 59.390 47.619 0.00 0.00 0.00 3.18
3174 5046 2.034939 TCAACTCGCACCTTCTCGTAAA 59.965 45.455 0.00 0.00 0.00 2.01
3175 5047 2.349297 ACTCGCACCTTCTCGTAAAG 57.651 50.000 0.00 0.00 0.00 1.85
3176 5048 1.884579 ACTCGCACCTTCTCGTAAAGA 59.115 47.619 1.86 0.00 0.00 2.52
3177 5049 2.295349 ACTCGCACCTTCTCGTAAAGAA 59.705 45.455 1.86 0.00 41.81 2.52
3178 5050 2.662156 CTCGCACCTTCTCGTAAAGAAC 59.338 50.000 1.86 0.00 39.12 3.01
3192 5064 3.695830 AAAGAACGGGATGTAAGAGCA 57.304 42.857 0.00 0.00 0.00 4.26
3193 5065 3.695830 AAGAACGGGATGTAAGAGCAA 57.304 42.857 0.00 0.00 0.00 3.91
3194 5066 2.973945 AGAACGGGATGTAAGAGCAAC 58.026 47.619 0.00 0.00 0.00 4.17
3195 5067 2.567615 AGAACGGGATGTAAGAGCAACT 59.432 45.455 0.00 0.00 0.00 3.16
3196 5068 2.674796 ACGGGATGTAAGAGCAACTC 57.325 50.000 0.00 0.00 0.00 3.01
3197 5069 1.207329 ACGGGATGTAAGAGCAACTCC 59.793 52.381 0.00 0.00 0.00 3.85
3198 5070 1.207089 CGGGATGTAAGAGCAACTCCA 59.793 52.381 0.00 0.00 0.00 3.86
3199 5071 2.354704 CGGGATGTAAGAGCAACTCCAA 60.355 50.000 0.00 0.00 0.00 3.53
3200 5072 3.010420 GGGATGTAAGAGCAACTCCAAC 58.990 50.000 0.00 0.00 0.00 3.77
3201 5073 2.673368 GGATGTAAGAGCAACTCCAACG 59.327 50.000 0.00 0.00 0.00 4.10
3202 5074 2.163818 TGTAAGAGCAACTCCAACGG 57.836 50.000 0.00 0.00 0.00 4.44
3203 5075 1.270625 TGTAAGAGCAACTCCAACGGG 60.271 52.381 0.00 0.00 0.00 5.28
3204 5076 1.053424 TAAGAGCAACTCCAACGGGT 58.947 50.000 0.00 0.00 34.93 5.28
3205 5077 0.250338 AAGAGCAACTCCAACGGGTC 60.250 55.000 0.00 0.00 34.93 4.46
3206 5078 2.027625 GAGCAACTCCAACGGGTCG 61.028 63.158 0.00 0.00 34.93 4.79
3207 5079 2.029964 GCAACTCCAACGGGTCGA 59.970 61.111 0.00 0.00 34.93 4.20
3208 5080 2.315386 GCAACTCCAACGGGTCGAC 61.315 63.158 7.13 7.13 34.93 4.20
3209 5081 1.666872 CAACTCCAACGGGTCGACC 60.667 63.158 27.04 27.04 34.93 4.79
3220 5092 2.168054 GGTCGACCCAAATGAACGG 58.832 57.895 24.75 0.00 0.00 4.44
3221 5093 1.500396 GTCGACCCAAATGAACGGC 59.500 57.895 3.51 0.00 0.00 5.68
3222 5094 2.030401 TCGACCCAAATGAACGGCG 61.030 57.895 4.80 4.80 0.00 6.46
3223 5095 2.178273 GACCCAAATGAACGGCGC 59.822 61.111 6.90 0.00 0.00 6.53
3224 5096 2.596046 ACCCAAATGAACGGCGCA 60.596 55.556 10.83 0.00 0.00 6.09
3225 5097 1.933115 GACCCAAATGAACGGCGCAT 61.933 55.000 10.83 0.00 0.00 4.73
3226 5098 1.215117 CCCAAATGAACGGCGCATT 59.785 52.632 10.83 6.89 37.56 3.56
3227 5099 0.389687 CCCAAATGAACGGCGCATTT 60.390 50.000 16.34 16.34 44.35 2.32
3229 5101 3.883997 AAATGAACGGCGCATTTGT 57.116 42.105 19.79 0.00 42.54 2.83
3230 5102 1.696988 AAATGAACGGCGCATTTGTC 58.303 45.000 19.79 0.00 42.54 3.18
3231 5103 0.881118 AATGAACGGCGCATTTGTCT 59.119 45.000 10.83 0.00 32.33 3.41
3232 5104 0.168788 ATGAACGGCGCATTTGTCTG 59.831 50.000 10.83 0.00 0.00 3.51
3233 5105 1.163420 TGAACGGCGCATTTGTCTGT 61.163 50.000 10.83 0.00 0.00 3.41
3234 5106 0.040425 GAACGGCGCATTTGTCTGTT 60.040 50.000 10.83 0.00 32.52 3.16
3235 5107 0.383949 AACGGCGCATTTGTCTGTTT 59.616 45.000 10.83 0.00 0.00 2.83
3236 5108 0.383949 ACGGCGCATTTGTCTGTTTT 59.616 45.000 10.83 0.00 0.00 2.43
3237 5109 1.202359 ACGGCGCATTTGTCTGTTTTT 60.202 42.857 10.83 0.00 0.00 1.94
3254 5126 2.011540 TTTTGTTTGTTTGGGTCGGC 57.988 45.000 0.00 0.00 0.00 5.54
3255 5127 0.175989 TTTGTTTGTTTGGGTCGGCC 59.824 50.000 0.00 0.00 0.00 6.13
3256 5128 2.005960 TTGTTTGTTTGGGTCGGCCG 62.006 55.000 22.12 22.12 34.97 6.13
3257 5129 3.597728 TTTGTTTGGGTCGGCCGC 61.598 61.111 23.51 16.04 34.97 6.53
3278 5150 4.446413 CCCGGCGTCCGCTTAGTT 62.446 66.667 11.82 0.00 46.86 2.24
3279 5151 2.433664 CCGGCGTCCGCTTAGTTT 60.434 61.111 11.82 0.00 46.86 2.66
3280 5152 2.030958 CCGGCGTCCGCTTAGTTTT 61.031 57.895 11.82 0.00 46.86 2.43
3281 5153 1.131826 CGGCGTCCGCTTAGTTTTG 59.868 57.895 11.82 0.00 41.17 2.44
3282 5154 1.154282 GGCGTCCGCTTAGTTTTGC 60.154 57.895 11.82 0.00 41.60 3.68
3283 5155 1.572447 GCGTCCGCTTAGTTTTGCA 59.428 52.632 4.10 0.00 38.26 4.08
3284 5156 0.168128 GCGTCCGCTTAGTTTTGCAT 59.832 50.000 4.10 0.00 38.26 3.96
3285 5157 1.401018 GCGTCCGCTTAGTTTTGCATT 60.401 47.619 4.10 0.00 38.26 3.56
3286 5158 2.920647 GCGTCCGCTTAGTTTTGCATTT 60.921 45.455 4.10 0.00 38.26 2.32
3287 5159 2.656422 CGTCCGCTTAGTTTTGCATTTG 59.344 45.455 0.00 0.00 0.00 2.32
3288 5160 3.608241 CGTCCGCTTAGTTTTGCATTTGA 60.608 43.478 0.00 0.00 0.00 2.69
3289 5161 3.914364 GTCCGCTTAGTTTTGCATTTGAG 59.086 43.478 0.00 0.00 0.00 3.02
3290 5162 3.568007 TCCGCTTAGTTTTGCATTTGAGT 59.432 39.130 0.00 0.00 0.00 3.41
3291 5163 3.914364 CCGCTTAGTTTTGCATTTGAGTC 59.086 43.478 0.00 0.00 0.00 3.36
3292 5164 3.599514 CGCTTAGTTTTGCATTTGAGTCG 59.400 43.478 0.00 0.00 0.00 4.18
3293 5165 3.914364 GCTTAGTTTTGCATTTGAGTCGG 59.086 43.478 0.00 0.00 0.00 4.79
3294 5166 2.422276 AGTTTTGCATTTGAGTCGGC 57.578 45.000 0.00 0.00 0.00 5.54
3295 5167 1.680735 AGTTTTGCATTTGAGTCGGCA 59.319 42.857 0.00 0.00 0.00 5.69
3296 5168 2.053627 GTTTTGCATTTGAGTCGGCAG 58.946 47.619 0.00 0.00 37.59 4.85
3297 5169 1.317613 TTTGCATTTGAGTCGGCAGT 58.682 45.000 0.00 0.00 37.59 4.40
3298 5170 0.592637 TTGCATTTGAGTCGGCAGTG 59.407 50.000 0.00 0.00 37.59 3.66
3299 5171 0.534877 TGCATTTGAGTCGGCAGTGT 60.535 50.000 0.00 0.00 0.00 3.55
3300 5172 0.110056 GCATTTGAGTCGGCAGTGTG 60.110 55.000 0.00 0.00 0.00 3.82
3301 5173 0.110056 CATTTGAGTCGGCAGTGTGC 60.110 55.000 0.00 0.00 44.08 4.57
3315 5187 3.343421 GTGCCCAACACGTCGACC 61.343 66.667 10.58 0.00 40.07 4.79
3316 5188 4.612412 TGCCCAACACGTCGACCC 62.612 66.667 10.58 0.00 0.00 4.46
3317 5189 4.612412 GCCCAACACGTCGACCCA 62.612 66.667 10.58 0.00 0.00 4.51
3318 5190 2.345991 CCCAACACGTCGACCCAT 59.654 61.111 10.58 0.00 0.00 4.00
3319 5191 1.302192 CCCAACACGTCGACCCATT 60.302 57.895 10.58 0.00 0.00 3.16
3320 5192 0.887387 CCCAACACGTCGACCCATTT 60.887 55.000 10.58 0.00 0.00 2.32
3321 5193 0.515564 CCAACACGTCGACCCATTTC 59.484 55.000 10.58 0.00 0.00 2.17
3322 5194 1.222300 CAACACGTCGACCCATTTCA 58.778 50.000 10.58 0.00 0.00 2.69
3323 5195 1.804151 CAACACGTCGACCCATTTCAT 59.196 47.619 10.58 0.00 0.00 2.57
3324 5196 1.438651 ACACGTCGACCCATTTCATG 58.561 50.000 10.58 0.00 0.00 3.07
3325 5197 1.270625 ACACGTCGACCCATTTCATGT 60.271 47.619 10.58 0.00 0.00 3.21
3326 5198 1.128507 CACGTCGACCCATTTCATGTG 59.871 52.381 10.58 5.05 0.00 3.21
3327 5199 0.096976 CGTCGACCCATTTCATGTGC 59.903 55.000 10.58 0.00 0.00 4.57
3328 5200 0.096976 GTCGACCCATTTCATGTGCG 59.903 55.000 3.51 0.00 0.00 5.34
3329 5201 0.321210 TCGACCCATTTCATGTGCGT 60.321 50.000 0.00 0.00 0.00 5.24
3330 5202 1.066787 TCGACCCATTTCATGTGCGTA 60.067 47.619 0.00 0.00 0.00 4.42
3331 5203 1.939934 CGACCCATTTCATGTGCGTAT 59.060 47.619 0.00 0.00 0.00 3.06
3332 5204 2.354510 CGACCCATTTCATGTGCGTATT 59.645 45.455 0.00 0.00 0.00 1.89
3333 5205 3.181501 CGACCCATTTCATGTGCGTATTT 60.182 43.478 0.00 0.00 0.00 1.40
3334 5206 4.034626 CGACCCATTTCATGTGCGTATTTA 59.965 41.667 0.00 0.00 0.00 1.40
3335 5207 5.447954 CGACCCATTTCATGTGCGTATTTAA 60.448 40.000 0.00 0.00 0.00 1.52
3336 5208 6.463995 ACCCATTTCATGTGCGTATTTAAT 57.536 33.333 0.00 0.00 0.00 1.40
3337 5209 6.872920 ACCCATTTCATGTGCGTATTTAATT 58.127 32.000 0.00 0.00 0.00 1.40
3338 5210 7.327214 ACCCATTTCATGTGCGTATTTAATTT 58.673 30.769 0.00 0.00 0.00 1.82
3339 5211 7.821846 ACCCATTTCATGTGCGTATTTAATTTT 59.178 29.630 0.00 0.00 0.00 1.82
3340 5212 8.663911 CCCATTTCATGTGCGTATTTAATTTTT 58.336 29.630 0.00 0.00 0.00 1.94
3364 5236 4.397348 AAAAAGTCCGCGGCTGAT 57.603 50.000 23.51 10.94 0.00 2.90
3365 5237 2.171635 AAAAAGTCCGCGGCTGATC 58.828 52.632 23.51 8.11 0.00 2.92
3366 5238 0.605319 AAAAAGTCCGCGGCTGATCA 60.605 50.000 23.51 0.00 0.00 2.92
3367 5239 0.392998 AAAAGTCCGCGGCTGATCAT 60.393 50.000 23.51 2.43 0.00 2.45
3368 5240 1.091771 AAAGTCCGCGGCTGATCATG 61.092 55.000 23.51 0.00 0.00 3.07
3369 5241 3.643978 GTCCGCGGCTGATCATGC 61.644 66.667 23.51 2.02 0.00 4.06
3370 5242 4.916293 TCCGCGGCTGATCATGCC 62.916 66.667 23.51 20.17 46.42 4.40
3385 5257 2.352422 GCCAGTGGCCATGTCTCA 59.648 61.111 24.53 0.00 44.06 3.27
3386 5258 1.077212 GCCAGTGGCCATGTCTCAT 60.077 57.895 24.53 0.00 44.06 2.90
3387 5259 1.381928 GCCAGTGGCCATGTCTCATG 61.382 60.000 24.53 0.00 44.06 3.07
3388 5260 1.381928 CCAGTGGCCATGTCTCATGC 61.382 60.000 9.72 0.00 0.00 4.06
3389 5261 1.077212 AGTGGCCATGTCTCATGCC 60.077 57.895 9.72 12.61 44.27 4.40
3391 5263 2.903855 GGCCATGTCTCATGCCGG 60.904 66.667 0.00 0.00 33.59 6.13
3392 5264 3.589881 GCCATGTCTCATGCCGGC 61.590 66.667 22.73 22.73 0.00 6.13
3393 5265 2.124612 CCATGTCTCATGCCGGCA 60.125 61.111 34.80 34.80 0.00 5.69
3394 5266 2.475466 CCATGTCTCATGCCGGCAC 61.475 63.158 35.50 19.90 0.00 5.01
3395 5267 2.124570 ATGTCTCATGCCGGCACC 60.125 61.111 35.50 17.52 0.00 5.01
3396 5268 2.970379 ATGTCTCATGCCGGCACCA 61.970 57.895 35.50 22.60 0.00 4.17
3397 5269 2.124570 GTCTCATGCCGGCACCAT 60.125 61.111 35.50 14.65 0.00 3.55
3398 5270 2.124612 TCTCATGCCGGCACCATG 60.125 61.111 35.50 26.75 41.03 3.66
3399 5271 3.896133 CTCATGCCGGCACCATGC 61.896 66.667 35.50 0.00 44.08 4.06
3416 5288 3.508474 CCAACGCCGGCATACAAT 58.492 55.556 28.98 1.60 0.00 2.71
3417 5289 1.063972 CCAACGCCGGCATACAATG 59.936 57.895 28.98 14.43 0.00 2.82
3428 5300 2.937469 CATACAATGCCGGCTTCAAA 57.063 45.000 29.70 7.00 0.00 2.69
3429 5301 3.229276 CATACAATGCCGGCTTCAAAA 57.771 42.857 29.70 6.08 0.00 2.44
3430 5302 3.583806 CATACAATGCCGGCTTCAAAAA 58.416 40.909 29.70 5.17 0.00 1.94
3450 5322 6.594788 AAAAATATCACCACAGTTCATGCT 57.405 33.333 0.00 0.00 0.00 3.79
3451 5323 5.571784 AAATATCACCACAGTTCATGCTG 57.428 39.130 0.00 0.00 41.92 4.41
3452 5324 1.830279 ATCACCACAGTTCATGCTGG 58.170 50.000 5.48 0.00 40.59 4.85
3453 5325 0.890542 TCACCACAGTTCATGCTGGC 60.891 55.000 5.48 0.00 40.59 4.85
3454 5326 1.968017 ACCACAGTTCATGCTGGCG 60.968 57.895 5.48 0.00 40.59 5.69
3455 5327 2.177531 CACAGTTCATGCTGGCGC 59.822 61.111 0.00 0.00 40.59 6.53
3489 5361 2.049802 GCACACATGCCAGCACAC 60.050 61.111 0.00 0.00 46.97 3.82
3490 5362 2.253154 CACACATGCCAGCACACG 59.747 61.111 0.00 0.00 0.00 4.49
3491 5363 2.110835 ACACATGCCAGCACACGA 59.889 55.556 0.00 0.00 0.00 4.35
3492 5364 1.525765 ACACATGCCAGCACACGAA 60.526 52.632 0.00 0.00 0.00 3.85
3493 5365 0.890542 ACACATGCCAGCACACGAAT 60.891 50.000 0.00 0.00 0.00 3.34
3494 5366 0.179181 CACATGCCAGCACACGAATC 60.179 55.000 0.00 0.00 0.00 2.52
3495 5367 0.321919 ACATGCCAGCACACGAATCT 60.322 50.000 0.00 0.00 0.00 2.40
3496 5368 1.066215 ACATGCCAGCACACGAATCTA 60.066 47.619 0.00 0.00 0.00 1.98
3497 5369 2.009051 CATGCCAGCACACGAATCTAA 58.991 47.619 0.00 0.00 0.00 2.10
3498 5370 2.177394 TGCCAGCACACGAATCTAAA 57.823 45.000 0.00 0.00 0.00 1.85
3499 5371 2.499197 TGCCAGCACACGAATCTAAAA 58.501 42.857 0.00 0.00 0.00 1.52
3500 5372 2.483877 TGCCAGCACACGAATCTAAAAG 59.516 45.455 0.00 0.00 0.00 2.27
3501 5373 2.159517 GCCAGCACACGAATCTAAAAGG 60.160 50.000 0.00 0.00 0.00 3.11
3502 5374 3.074412 CCAGCACACGAATCTAAAAGGT 58.926 45.455 0.00 0.00 0.00 3.50
3503 5375 3.502211 CCAGCACACGAATCTAAAAGGTT 59.498 43.478 0.00 0.00 0.00 3.50
3504 5376 4.466828 CAGCACACGAATCTAAAAGGTTG 58.533 43.478 0.00 0.00 0.00 3.77
3505 5377 4.213270 CAGCACACGAATCTAAAAGGTTGA 59.787 41.667 0.00 0.00 0.00 3.18
3506 5378 4.819630 AGCACACGAATCTAAAAGGTTGAA 59.180 37.500 0.00 0.00 0.00 2.69
3507 5379 5.473504 AGCACACGAATCTAAAAGGTTGAAT 59.526 36.000 0.00 0.00 0.00 2.57
3508 5380 5.569059 GCACACGAATCTAAAAGGTTGAATG 59.431 40.000 0.00 0.00 0.00 2.67
3509 5381 5.569059 CACACGAATCTAAAAGGTTGAATGC 59.431 40.000 0.00 0.00 0.00 3.56
3510 5382 5.473504 ACACGAATCTAAAAGGTTGAATGCT 59.526 36.000 0.00 0.00 0.00 3.79
3511 5383 6.016276 ACACGAATCTAAAAGGTTGAATGCTT 60.016 34.615 0.00 0.00 0.00 3.91
3512 5384 6.863126 CACGAATCTAAAAGGTTGAATGCTTT 59.137 34.615 0.00 0.00 0.00 3.51
3513 5385 7.382218 CACGAATCTAAAAGGTTGAATGCTTTT 59.618 33.333 0.00 0.00 34.10 2.27
3514 5386 7.382218 ACGAATCTAAAAGGTTGAATGCTTTTG 59.618 33.333 0.00 0.00 32.28 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.485463 AACACCTCAGATCCAAACGAA 57.515 42.857 0.00 0.00 0.00 3.85
2 3 4.819105 ATAACACCTCAGATCCAAACGA 57.181 40.909 0.00 0.00 0.00 3.85
5 6 9.123902 CAATCAATATAACACCTCAGATCCAAA 57.876 33.333 0.00 0.00 0.00 3.28
6 7 8.493607 TCAATCAATATAACACCTCAGATCCAA 58.506 33.333 0.00 0.00 0.00 3.53
12 13 7.770801 TCGTTCAATCAATATAACACCTCAG 57.229 36.000 0.00 0.00 0.00 3.35
48 49 3.573538 CACAAATCCACTCCCACAAATGA 59.426 43.478 0.00 0.00 0.00 2.57
81 82 1.911702 GAGGACCTGGGTGCCCTAAC 61.912 65.000 0.00 0.00 37.15 2.34
83 84 2.040606 GAGGACCTGGGTGCCCTA 59.959 66.667 0.00 0.00 37.15 3.53
91 92 2.809861 AAGCACGCATGAGGACCTGG 62.810 60.000 0.00 0.00 0.00 4.45
137 139 9.058174 TGGACTGTTCGTTCAAAAGATATAAAA 57.942 29.630 0.00 0.00 0.00 1.52
195 197 6.486993 GGATCTTATTTTAAAGCCCTCGTCAT 59.513 38.462 0.00 0.00 0.00 3.06
269 273 5.407387 GGTCGCACATACTAAGTTTCAAGAA 59.593 40.000 0.00 0.00 0.00 2.52
285 289 5.833406 ATCATGATTTTATTGGTCGCACA 57.167 34.783 1.18 0.00 0.00 4.57
287 291 7.601886 ACAAAAATCATGATTTTATTGGTCGCA 59.398 29.630 35.08 0.00 46.76 5.10
354 361 2.229792 TGCTGGCTCTTACCAAGTTTG 58.770 47.619 0.00 0.00 39.86 2.93
370 377 6.890663 TTTGAACTTGTGATTTTCTTGCTG 57.109 33.333 0.00 0.00 0.00 4.41
381 388 9.574458 TTACGATTTTTCATTTTGAACTTGTGA 57.426 25.926 0.00 0.00 35.89 3.58
390 397 9.340327 CGTTGAAACTTACGATTTTTCATTTTG 57.660 29.630 0.00 0.00 38.65 2.44
391 398 9.291664 TCGTTGAAACTTACGATTTTTCATTTT 57.708 25.926 0.00 0.00 41.38 1.82
393 400 8.126700 AGTCGTTGAAACTTACGATTTTTCATT 58.873 29.630 0.00 0.00 46.87 2.57
396 403 7.121272 TCAGTCGTTGAAACTTACGATTTTTC 58.879 34.615 0.00 0.00 46.87 2.29
465 472 2.610976 GCTTGATTGCCTCACATTTGCA 60.611 45.455 0.00 0.00 32.17 4.08
466 473 1.997606 GCTTGATTGCCTCACATTTGC 59.002 47.619 0.00 0.00 32.17 3.68
468 475 1.203052 CCGCTTGATTGCCTCACATTT 59.797 47.619 0.00 0.00 32.17 2.32
508 539 3.935828 TCGAAACCATACAAATGCATCGA 59.064 39.130 0.00 0.00 37.48 3.59
528 559 3.775610 CGCGTTCATTTTCAAAGATCTCG 59.224 43.478 0.00 0.00 0.00 4.04
564 595 2.550180 TCAACGGATTCGCATTTGTTCA 59.450 40.909 0.00 0.00 40.63 3.18
566 597 2.552315 AGTCAACGGATTCGCATTTGTT 59.448 40.909 0.00 0.00 40.63 2.83
580 611 0.653323 CGTTTGCGGACAAGTCAACG 60.653 55.000 8.47 8.47 37.04 4.10
595 626 2.981859 AGATGTATCGGAAGGCGTTT 57.018 45.000 0.00 0.00 0.00 3.60
655 696 0.887387 GGTAAAAGGTGGCGACTGCA 60.887 55.000 0.00 0.00 45.35 4.41
726 767 4.582240 TCGGACGAGTAGATCAGTAGAGTA 59.418 45.833 0.00 0.00 0.00 2.59
735 776 3.799137 GTCTGATCGGACGAGTAGATC 57.201 52.381 18.66 11.65 40.68 2.75
853 894 0.713329 GCCATTTAAAAAGCGGCGTG 59.287 50.000 9.37 0.00 32.78 5.34
892 933 1.696884 TGCTGGTCTGGTGTAATGACA 59.303 47.619 0.00 0.00 32.84 3.58
900 941 2.670934 GCTGGTGCTGGTCTGGTG 60.671 66.667 0.00 0.00 36.03 4.17
1012 1092 0.739112 GCGAAGGAGAGCTGGTGAAG 60.739 60.000 0.00 0.00 0.00 3.02
1014 1094 2.650116 GGCGAAGGAGAGCTGGTGA 61.650 63.158 0.00 0.00 0.00 4.02
1601 3193 3.530104 CGGCGTCGTCGTTGTAGC 61.530 66.667 11.83 0.00 39.49 3.58
1876 3487 3.374402 CTCCCGCGCGATCCCTAT 61.374 66.667 34.63 0.00 0.00 2.57
2151 3774 4.778143 ACCATGTCCCGCTTCGCC 62.778 66.667 0.00 0.00 0.00 5.54
2454 4077 3.756727 GACCCGACCTGGACGTCC 61.757 72.222 28.17 28.17 42.00 4.79
2530 4153 1.425412 AATGAAGTACACGTGGCGAC 58.575 50.000 21.57 14.36 0.00 5.19
2546 4169 4.248859 TCGAGAAAAGCAGAGGAGAAATG 58.751 43.478 0.00 0.00 0.00 2.32
2547 4170 4.543590 TCGAGAAAAGCAGAGGAGAAAT 57.456 40.909 0.00 0.00 0.00 2.17
2551 4176 2.098280 TCGATCGAGAAAAGCAGAGGAG 59.902 50.000 15.15 0.00 0.00 3.69
2583 4208 5.292765 AGTGTAGTATCACATGCATAGTGC 58.707 41.667 18.67 9.41 41.11 4.40
2598 4223 4.956075 TCATCTCTCCATGCAAGTGTAGTA 59.044 41.667 0.00 0.00 0.00 1.82
2599 4224 3.771479 TCATCTCTCCATGCAAGTGTAGT 59.229 43.478 0.00 0.00 0.00 2.73
2600 4225 4.370049 CTCATCTCTCCATGCAAGTGTAG 58.630 47.826 0.00 0.00 0.00 2.74
2616 4241 5.762179 TCTTGGTACACAAATCCTCATCT 57.238 39.130 0.00 0.00 39.29 2.90
2637 4263 9.420551 TCTCGTCTTTACTAGGAAAAGAAAATC 57.579 33.333 18.69 9.56 42.83 2.17
2659 4285 0.953960 CCTGGGAAAAACCGGTCTCG 60.954 60.000 8.04 0.00 40.11 4.04
2690 4317 6.922957 TGACTAATTGGCAAAAACATCTCAAC 59.077 34.615 3.01 0.00 0.00 3.18
2716 4349 1.198713 GCTCCCCTTCATCTCACTGA 58.801 55.000 0.00 0.00 0.00 3.41
2717 4350 1.134461 CAGCTCCCCTTCATCTCACTG 60.134 57.143 0.00 0.00 0.00 3.66
2718 4351 1.202330 CAGCTCCCCTTCATCTCACT 58.798 55.000 0.00 0.00 0.00 3.41
2729 4362 2.283173 CCAACCAACCAGCTCCCC 60.283 66.667 0.00 0.00 0.00 4.81
2733 4366 2.521708 GCCACCAACCAACCAGCT 60.522 61.111 0.00 0.00 0.00 4.24
2736 4369 0.032615 AAAGAGCCACCAACCAACCA 60.033 50.000 0.00 0.00 0.00 3.67
2740 4412 1.926657 TGGAAAGAGCCACCAACCA 59.073 52.632 0.00 0.00 31.66 3.67
2757 4429 4.256920 AGAATCTTGATCGGTCCTTTGTG 58.743 43.478 0.00 0.00 0.00 3.33
2796 4469 1.004277 TGGTACTCCCACTTTGCCATC 59.996 52.381 0.00 0.00 38.72 3.51
2892 4568 3.191078 AGAGAGAATGAAATGGAGCCG 57.809 47.619 0.00 0.00 0.00 5.52
2904 4580 6.127479 GCCCGATGTAAGATCATAGAGAGAAT 60.127 42.308 0.00 0.00 0.00 2.40
2940 4630 1.075896 AAGCCCGGTCCAAAAACCA 60.076 52.632 0.00 0.00 39.43 3.67
2987 4834 1.483827 TGGGCTTCATTTTGCAACACA 59.516 42.857 0.00 0.00 0.00 3.72
2988 4835 2.237393 TGGGCTTCATTTTGCAACAC 57.763 45.000 0.00 0.00 0.00 3.32
2994 4841 2.799978 GGTTTCGTTGGGCTTCATTTTG 59.200 45.455 0.00 0.00 0.00 2.44
2996 4843 1.343142 GGGTTTCGTTGGGCTTCATTT 59.657 47.619 0.00 0.00 0.00 2.32
3030 4877 0.673956 GCTTGACCCGAACCCTTCTC 60.674 60.000 0.00 0.00 0.00 2.87
3031 4878 1.128188 AGCTTGACCCGAACCCTTCT 61.128 55.000 0.00 0.00 0.00 2.85
3032 4879 0.955919 CAGCTTGACCCGAACCCTTC 60.956 60.000 0.00 0.00 0.00 3.46
3033 4880 1.073199 CAGCTTGACCCGAACCCTT 59.927 57.895 0.00 0.00 0.00 3.95
3034 4881 2.113243 GACAGCTTGACCCGAACCCT 62.113 60.000 0.00 0.00 0.00 4.34
3035 4882 1.671379 GACAGCTTGACCCGAACCC 60.671 63.158 0.00 0.00 0.00 4.11
3037 4884 0.321653 ATGGACAGCTTGACCCGAAC 60.322 55.000 0.00 0.00 31.12 3.95
3038 4885 0.321564 CATGGACAGCTTGACCCGAA 60.322 55.000 0.00 0.00 31.12 4.30
3039 4886 1.191489 TCATGGACAGCTTGACCCGA 61.191 55.000 0.00 0.00 31.12 5.14
3040 4887 0.107508 ATCATGGACAGCTTGACCCG 60.108 55.000 0.00 0.00 31.12 5.28
3043 4890 2.286872 CCTGATCATGGACAGCTTGAC 58.713 52.381 0.00 0.00 33.40 3.18
3044 4891 1.911357 ACCTGATCATGGACAGCTTGA 59.089 47.619 15.51 0.00 33.40 3.02
3045 4892 2.414994 ACCTGATCATGGACAGCTTG 57.585 50.000 15.51 4.73 33.40 4.01
3046 4893 3.446442 AAACCTGATCATGGACAGCTT 57.554 42.857 15.51 5.20 33.40 3.74
3047 4894 3.521126 AGTAAACCTGATCATGGACAGCT 59.479 43.478 15.51 7.36 33.40 4.24
3096 4968 4.668138 ATAGGACCACCAGGCTTAAAAA 57.332 40.909 0.00 0.00 39.06 1.94
3097 4969 4.340617 CAATAGGACCACCAGGCTTAAAA 58.659 43.478 0.00 0.00 39.06 1.52
3098 4970 3.876156 GCAATAGGACCACCAGGCTTAAA 60.876 47.826 0.00 0.00 39.06 1.52
3099 4971 2.356741 GCAATAGGACCACCAGGCTTAA 60.357 50.000 0.00 0.00 39.06 1.85
3100 4972 1.211949 GCAATAGGACCACCAGGCTTA 59.788 52.381 0.00 0.00 39.06 3.09
3101 4973 0.034089 GCAATAGGACCACCAGGCTT 60.034 55.000 0.00 0.00 39.06 4.35
3102 4974 0.916358 AGCAATAGGACCACCAGGCT 60.916 55.000 0.00 0.00 39.06 4.58
3103 4975 0.034089 AAGCAATAGGACCACCAGGC 60.034 55.000 0.00 0.00 39.06 4.85
3104 4976 2.505819 ACTAAGCAATAGGACCACCAGG 59.494 50.000 0.00 0.00 38.94 4.45
3105 4977 3.914426 ACTAAGCAATAGGACCACCAG 57.086 47.619 0.00 0.00 38.94 4.00
3106 4978 5.765576 TTAACTAAGCAATAGGACCACCA 57.234 39.130 0.00 0.00 38.94 4.17
3107 4979 7.416326 CCAATTTAACTAAGCAATAGGACCACC 60.416 40.741 0.00 0.00 35.81 4.61
3108 4980 7.338449 TCCAATTTAACTAAGCAATAGGACCAC 59.662 37.037 0.00 0.00 35.81 4.16
3109 4981 7.338449 GTCCAATTTAACTAAGCAATAGGACCA 59.662 37.037 0.00 0.00 35.74 4.02
3110 4982 7.556635 AGTCCAATTTAACTAAGCAATAGGACC 59.443 37.037 0.00 0.00 41.04 4.46
3111 4983 8.507524 AGTCCAATTTAACTAAGCAATAGGAC 57.492 34.615 0.00 0.00 40.58 3.85
3112 4984 8.956426 CAAGTCCAATTTAACTAAGCAATAGGA 58.044 33.333 2.18 0.00 35.81 2.94
3113 4985 8.190784 CCAAGTCCAATTTAACTAAGCAATAGG 58.809 37.037 2.18 0.00 35.81 2.57
3114 4986 8.739972 ACCAAGTCCAATTTAACTAAGCAATAG 58.260 33.333 0.00 0.00 37.66 1.73
3115 4987 8.644374 ACCAAGTCCAATTTAACTAAGCAATA 57.356 30.769 0.00 0.00 0.00 1.90
3116 4988 7.539034 ACCAAGTCCAATTTAACTAAGCAAT 57.461 32.000 0.00 0.00 0.00 3.56
3117 4989 6.969993 ACCAAGTCCAATTTAACTAAGCAA 57.030 33.333 0.00 0.00 0.00 3.91
3118 4990 7.502895 TGTTACCAAGTCCAATTTAACTAAGCA 59.497 33.333 0.00 0.00 0.00 3.91
3119 4991 7.878036 TGTTACCAAGTCCAATTTAACTAAGC 58.122 34.615 0.00 0.00 0.00 3.09
3120 4992 9.673454 GTTGTTACCAAGTCCAATTTAACTAAG 57.327 33.333 0.00 0.00 0.00 2.18
3121 4993 8.631797 GGTTGTTACCAAGTCCAATTTAACTAA 58.368 33.333 0.00 0.00 44.36 2.24
3122 4994 7.041235 CGGTTGTTACCAAGTCCAATTTAACTA 60.041 37.037 0.00 0.00 45.31 2.24
3123 4995 6.238814 CGGTTGTTACCAAGTCCAATTTAACT 60.239 38.462 0.00 0.00 45.31 2.24
3124 4996 5.916320 CGGTTGTTACCAAGTCCAATTTAAC 59.084 40.000 0.00 0.00 45.31 2.01
3125 4997 5.826737 TCGGTTGTTACCAAGTCCAATTTAA 59.173 36.000 0.00 0.00 45.31 1.52
3126 4998 5.374921 TCGGTTGTTACCAAGTCCAATTTA 58.625 37.500 0.00 0.00 45.31 1.40
3127 4999 4.208746 TCGGTTGTTACCAAGTCCAATTT 58.791 39.130 0.00 0.00 45.31 1.82
3128 5000 3.822940 TCGGTTGTTACCAAGTCCAATT 58.177 40.909 0.00 0.00 45.31 2.32
3129 5001 3.495434 TCGGTTGTTACCAAGTCCAAT 57.505 42.857 0.00 0.00 45.31 3.16
3130 5002 2.944349 GTTCGGTTGTTACCAAGTCCAA 59.056 45.455 0.00 0.00 45.31 3.53
3131 5003 2.093075 TGTTCGGTTGTTACCAAGTCCA 60.093 45.455 0.00 0.00 45.31 4.02
3132 5004 2.563702 TGTTCGGTTGTTACCAAGTCC 58.436 47.619 0.00 0.00 45.31 3.85
3133 5005 3.810941 TGATGTTCGGTTGTTACCAAGTC 59.189 43.478 0.00 0.00 45.31 3.01
3134 5006 3.811083 TGATGTTCGGTTGTTACCAAGT 58.189 40.909 0.00 0.00 45.31 3.16
3135 5007 4.274950 AGTTGATGTTCGGTTGTTACCAAG 59.725 41.667 0.00 0.00 45.31 3.61
3136 5008 4.200874 AGTTGATGTTCGGTTGTTACCAA 58.799 39.130 0.00 0.00 45.31 3.67
3137 5009 3.810941 GAGTTGATGTTCGGTTGTTACCA 59.189 43.478 0.00 0.00 45.31 3.25
3138 5010 3.120786 CGAGTTGATGTTCGGTTGTTACC 60.121 47.826 0.00 0.00 41.33 2.85
3139 5011 3.663493 GCGAGTTGATGTTCGGTTGTTAC 60.663 47.826 0.00 0.00 37.30 2.50
3140 5012 2.477375 GCGAGTTGATGTTCGGTTGTTA 59.523 45.455 0.00 0.00 37.30 2.41
3141 5013 1.263217 GCGAGTTGATGTTCGGTTGTT 59.737 47.619 0.00 0.00 37.30 2.83
3142 5014 0.865769 GCGAGTTGATGTTCGGTTGT 59.134 50.000 0.00 0.00 37.30 3.32
3143 5015 0.865111 TGCGAGTTGATGTTCGGTTG 59.135 50.000 0.00 0.00 37.30 3.77
3144 5016 0.865769 GTGCGAGTTGATGTTCGGTT 59.134 50.000 0.00 0.00 37.30 4.44
3145 5017 0.949105 GGTGCGAGTTGATGTTCGGT 60.949 55.000 0.00 0.00 37.30 4.69
3146 5018 0.670546 AGGTGCGAGTTGATGTTCGG 60.671 55.000 0.00 0.00 37.30 4.30
3147 5019 1.126846 GAAGGTGCGAGTTGATGTTCG 59.873 52.381 0.00 0.00 39.69 3.95
3148 5020 2.413453 GAGAAGGTGCGAGTTGATGTTC 59.587 50.000 0.00 0.00 0.00 3.18
3149 5021 2.417719 GAGAAGGTGCGAGTTGATGTT 58.582 47.619 0.00 0.00 0.00 2.71
3150 5022 1.670087 CGAGAAGGTGCGAGTTGATGT 60.670 52.381 0.00 0.00 0.00 3.06
3151 5023 0.994995 CGAGAAGGTGCGAGTTGATG 59.005 55.000 0.00 0.00 0.00 3.07
3152 5024 0.603569 ACGAGAAGGTGCGAGTTGAT 59.396 50.000 0.00 0.00 0.00 2.57
3153 5025 1.241165 TACGAGAAGGTGCGAGTTGA 58.759 50.000 0.00 0.00 0.00 3.18
3154 5026 2.060326 TTACGAGAAGGTGCGAGTTG 57.940 50.000 0.00 0.00 0.00 3.16
3155 5027 2.295349 TCTTTACGAGAAGGTGCGAGTT 59.705 45.455 0.00 0.00 0.00 3.01
3156 5028 1.884579 TCTTTACGAGAAGGTGCGAGT 59.115 47.619 0.00 0.00 0.00 4.18
3157 5029 2.631418 TCTTTACGAGAAGGTGCGAG 57.369 50.000 0.00 0.00 0.00 5.03
3158 5030 2.669364 GTTCTTTACGAGAAGGTGCGA 58.331 47.619 0.00 0.00 44.78 5.10
3170 5042 4.501071 TGCTCTTACATCCCGTTCTTTAC 58.499 43.478 0.00 0.00 0.00 2.01
3171 5043 4.811969 TGCTCTTACATCCCGTTCTTTA 57.188 40.909 0.00 0.00 0.00 1.85
3172 5044 3.695830 TGCTCTTACATCCCGTTCTTT 57.304 42.857 0.00 0.00 0.00 2.52
3173 5045 3.008049 AGTTGCTCTTACATCCCGTTCTT 59.992 43.478 0.00 0.00 0.00 2.52
3174 5046 2.567615 AGTTGCTCTTACATCCCGTTCT 59.432 45.455 0.00 0.00 0.00 3.01
3175 5047 2.930682 GAGTTGCTCTTACATCCCGTTC 59.069 50.000 0.00 0.00 0.00 3.95
3176 5048 2.354805 GGAGTTGCTCTTACATCCCGTT 60.355 50.000 0.00 0.00 0.00 4.44
3177 5049 1.207329 GGAGTTGCTCTTACATCCCGT 59.793 52.381 0.00 0.00 0.00 5.28
3178 5050 1.207089 TGGAGTTGCTCTTACATCCCG 59.793 52.381 0.00 0.00 0.00 5.14
3179 5051 3.010420 GTTGGAGTTGCTCTTACATCCC 58.990 50.000 0.00 0.00 0.00 3.85
3180 5052 2.673368 CGTTGGAGTTGCTCTTACATCC 59.327 50.000 0.00 0.00 0.00 3.51
3181 5053 2.673368 CCGTTGGAGTTGCTCTTACATC 59.327 50.000 0.00 0.00 0.00 3.06
3182 5054 2.615493 CCCGTTGGAGTTGCTCTTACAT 60.615 50.000 0.00 0.00 0.00 2.29
3183 5055 1.270625 CCCGTTGGAGTTGCTCTTACA 60.271 52.381 0.00 0.00 0.00 2.41
3184 5056 1.270678 ACCCGTTGGAGTTGCTCTTAC 60.271 52.381 0.00 0.00 34.81 2.34
3185 5057 1.001633 GACCCGTTGGAGTTGCTCTTA 59.998 52.381 0.00 0.00 34.81 2.10
3186 5058 0.250338 GACCCGTTGGAGTTGCTCTT 60.250 55.000 0.00 0.00 34.81 2.85
3187 5059 1.371558 GACCCGTTGGAGTTGCTCT 59.628 57.895 0.00 0.00 34.81 4.09
3188 5060 2.027625 CGACCCGTTGGAGTTGCTC 61.028 63.158 0.00 0.00 34.81 4.26
3189 5061 2.030562 CGACCCGTTGGAGTTGCT 59.969 61.111 0.00 0.00 34.81 3.91
3190 5062 2.029964 TCGACCCGTTGGAGTTGC 59.970 61.111 0.00 0.00 34.81 4.17
3191 5063 1.666872 GGTCGACCCGTTGGAGTTG 60.667 63.158 24.75 0.00 34.81 3.16
3192 5064 2.739132 GGTCGACCCGTTGGAGTT 59.261 61.111 24.75 0.00 34.81 3.01
3202 5074 1.918868 GCCGTTCATTTGGGTCGACC 61.919 60.000 27.04 27.04 40.81 4.79
3203 5075 1.500396 GCCGTTCATTTGGGTCGAC 59.500 57.895 7.13 7.13 0.00 4.20
3204 5076 2.030401 CGCCGTTCATTTGGGTCGA 61.030 57.895 0.00 0.00 0.00 4.20
3205 5077 2.478746 CGCCGTTCATTTGGGTCG 59.521 61.111 0.00 0.00 0.00 4.79
3206 5078 1.933115 ATGCGCCGTTCATTTGGGTC 61.933 55.000 4.18 0.00 0.00 4.46
3207 5079 1.531739 AATGCGCCGTTCATTTGGGT 61.532 50.000 4.18 0.00 30.60 4.51
3208 5080 0.389687 AAATGCGCCGTTCATTTGGG 60.390 50.000 4.18 0.00 41.15 4.12
3209 5081 3.120627 AAATGCGCCGTTCATTTGG 57.879 47.368 4.18 0.00 41.15 3.28
3211 5083 1.269448 AGACAAATGCGCCGTTCATTT 59.731 42.857 4.18 0.03 42.83 2.32
3212 5084 0.881118 AGACAAATGCGCCGTTCATT 59.119 45.000 4.18 0.00 35.83 2.57
3213 5085 0.168788 CAGACAAATGCGCCGTTCAT 59.831 50.000 4.18 0.00 0.00 2.57
3214 5086 1.163420 ACAGACAAATGCGCCGTTCA 61.163 50.000 4.18 0.00 0.00 3.18
3215 5087 0.040425 AACAGACAAATGCGCCGTTC 60.040 50.000 4.18 0.00 0.00 3.95
3216 5088 0.383949 AAACAGACAAATGCGCCGTT 59.616 45.000 4.18 0.00 0.00 4.44
3217 5089 0.383949 AAAACAGACAAATGCGCCGT 59.616 45.000 4.18 0.00 0.00 5.68
3218 5090 1.486439 AAAAACAGACAAATGCGCCG 58.514 45.000 4.18 0.00 0.00 6.46
3234 5106 2.347731 GCCGACCCAAACAAACAAAAA 58.652 42.857 0.00 0.00 0.00 1.94
3235 5107 1.405661 GGCCGACCCAAACAAACAAAA 60.406 47.619 0.00 0.00 0.00 2.44
3236 5108 0.175989 GGCCGACCCAAACAAACAAA 59.824 50.000 0.00 0.00 0.00 2.83
3237 5109 1.817209 GGCCGACCCAAACAAACAA 59.183 52.632 0.00 0.00 0.00 2.83
3238 5110 2.482333 CGGCCGACCCAAACAAACA 61.482 57.895 24.07 0.00 0.00 2.83
3239 5111 2.333581 CGGCCGACCCAAACAAAC 59.666 61.111 24.07 0.00 0.00 2.93
3240 5112 3.597728 GCGGCCGACCCAAACAAA 61.598 61.111 33.48 0.00 0.00 2.83
3264 5136 1.154282 GCAAAACTAAGCGGACGCC 60.154 57.895 13.63 0.00 43.17 5.68
3265 5137 0.168128 ATGCAAAACTAAGCGGACGC 59.832 50.000 8.91 8.91 42.33 5.19
3266 5138 2.611974 AATGCAAAACTAAGCGGACG 57.388 45.000 0.00 0.00 0.00 4.79
3267 5139 3.896122 TCAAATGCAAAACTAAGCGGAC 58.104 40.909 0.00 0.00 0.00 4.79
3268 5140 3.568007 ACTCAAATGCAAAACTAAGCGGA 59.432 39.130 0.00 0.00 0.00 5.54
3269 5141 3.900941 ACTCAAATGCAAAACTAAGCGG 58.099 40.909 0.00 0.00 0.00 5.52
3270 5142 3.599514 CGACTCAAATGCAAAACTAAGCG 59.400 43.478 0.00 0.00 0.00 4.68
3271 5143 3.914364 CCGACTCAAATGCAAAACTAAGC 59.086 43.478 0.00 0.00 0.00 3.09
3272 5144 3.914364 GCCGACTCAAATGCAAAACTAAG 59.086 43.478 0.00 0.00 0.00 2.18
3273 5145 3.316588 TGCCGACTCAAATGCAAAACTAA 59.683 39.130 0.00 0.00 0.00 2.24
3274 5146 2.881513 TGCCGACTCAAATGCAAAACTA 59.118 40.909 0.00 0.00 0.00 2.24
3275 5147 1.680735 TGCCGACTCAAATGCAAAACT 59.319 42.857 0.00 0.00 0.00 2.66
3276 5148 2.053627 CTGCCGACTCAAATGCAAAAC 58.946 47.619 0.00 0.00 32.58 2.43
3277 5149 1.680735 ACTGCCGACTCAAATGCAAAA 59.319 42.857 0.00 0.00 32.58 2.44
3278 5150 1.001487 CACTGCCGACTCAAATGCAAA 60.001 47.619 0.00 0.00 32.58 3.68
3279 5151 0.592637 CACTGCCGACTCAAATGCAA 59.407 50.000 0.00 0.00 32.58 4.08
3280 5152 0.534877 ACACTGCCGACTCAAATGCA 60.535 50.000 0.00 0.00 0.00 3.96
3281 5153 0.110056 CACACTGCCGACTCAAATGC 60.110 55.000 0.00 0.00 0.00 3.56
3282 5154 0.110056 GCACACTGCCGACTCAAATG 60.110 55.000 0.00 0.00 37.42 2.32
3283 5155 2.247790 GCACACTGCCGACTCAAAT 58.752 52.632 0.00 0.00 37.42 2.32
3284 5156 3.731136 GCACACTGCCGACTCAAA 58.269 55.556 0.00 0.00 37.42 2.69
3298 5170 3.343421 GGTCGACGTGTTGGGCAC 61.343 66.667 9.92 0.00 44.36 5.01
3299 5171 4.612412 GGGTCGACGTGTTGGGCA 62.612 66.667 9.92 0.00 0.00 5.36
3300 5172 3.894547 ATGGGTCGACGTGTTGGGC 62.895 63.158 9.92 0.00 0.00 5.36
3301 5173 0.887387 AAATGGGTCGACGTGTTGGG 60.887 55.000 9.92 0.00 0.00 4.12
3302 5174 0.515564 GAAATGGGTCGACGTGTTGG 59.484 55.000 9.92 0.00 0.00 3.77
3303 5175 1.222300 TGAAATGGGTCGACGTGTTG 58.778 50.000 9.92 0.00 0.00 3.33
3304 5176 1.804151 CATGAAATGGGTCGACGTGTT 59.196 47.619 9.92 0.66 41.79 3.32
3305 5177 1.438651 CATGAAATGGGTCGACGTGT 58.561 50.000 9.92 0.00 41.79 4.49
3347 5219 0.605319 TGATCAGCCGCGGACTTTTT 60.605 50.000 33.48 11.86 0.00 1.94
3348 5220 0.392998 ATGATCAGCCGCGGACTTTT 60.393 50.000 33.48 14.38 0.00 2.27
3349 5221 1.091771 CATGATCAGCCGCGGACTTT 61.092 55.000 33.48 14.74 0.00 2.66
3350 5222 1.522355 CATGATCAGCCGCGGACTT 60.522 57.895 33.48 10.87 0.00 3.01
3351 5223 2.107750 CATGATCAGCCGCGGACT 59.892 61.111 33.48 22.91 0.00 3.85
3352 5224 3.643978 GCATGATCAGCCGCGGAC 61.644 66.667 33.48 20.78 0.00 4.79
3353 5225 4.916293 GGCATGATCAGCCGCGGA 62.916 66.667 33.48 8.89 43.15 5.54
3369 5241 1.381928 GCATGAGACATGGCCACTGG 61.382 60.000 8.16 2.83 0.00 4.00
3370 5242 1.381928 GGCATGAGACATGGCCACTG 61.382 60.000 21.83 10.78 45.70 3.66
3371 5243 1.077212 GGCATGAGACATGGCCACT 60.077 57.895 21.83 0.00 45.70 4.00
3372 5244 2.475466 CGGCATGAGACATGGCCAC 61.475 63.158 24.71 0.00 46.75 5.01
3373 5245 2.124612 CGGCATGAGACATGGCCA 60.125 61.111 24.71 8.56 46.75 5.36
3374 5246 2.903855 CCGGCATGAGACATGGCC 60.904 66.667 24.71 17.98 40.95 5.36
3375 5247 3.589881 GCCGGCATGAGACATGGC 61.590 66.667 24.80 22.27 40.66 4.40
3376 5248 2.124612 TGCCGGCATGAGACATGG 60.125 61.111 29.03 0.00 0.00 3.66
3377 5249 2.475466 GGTGCCGGCATGAGACATG 61.475 63.158 35.23 7.29 0.00 3.21
3378 5250 2.124570 GGTGCCGGCATGAGACAT 60.125 61.111 35.23 0.00 0.00 3.06
3379 5251 2.970379 ATGGTGCCGGCATGAGACA 61.970 57.895 35.23 24.88 0.00 3.41
3380 5252 2.124570 ATGGTGCCGGCATGAGAC 60.125 61.111 35.23 19.50 0.00 3.36
3381 5253 2.124612 CATGGTGCCGGCATGAGA 60.125 61.111 35.23 17.09 0.00 3.27
3382 5254 3.896133 GCATGGTGCCGGCATGAG 61.896 66.667 35.23 22.88 37.42 2.90
3399 5271 1.063972 CATTGTATGCCGGCGTTGG 59.936 57.895 29.18 8.35 0.00 3.77
3400 5272 4.688192 CATTGTATGCCGGCGTTG 57.312 55.556 29.18 15.46 0.00 4.10
3409 5281 2.937469 TTTGAAGCCGGCATTGTATG 57.063 45.000 31.54 0.00 0.00 2.39
3410 5282 3.951775 TTTTTGAAGCCGGCATTGTAT 57.048 38.095 31.54 2.66 0.00 2.29
3427 5299 6.392354 CAGCATGAACTGTGGTGATATTTTT 58.608 36.000 0.00 0.00 45.32 1.94
3428 5300 5.105635 CCAGCATGAACTGTGGTGATATTTT 60.106 40.000 0.00 0.00 45.32 1.82
3429 5301 4.400251 CCAGCATGAACTGTGGTGATATTT 59.600 41.667 0.00 0.00 45.32 1.40
3430 5302 3.949754 CCAGCATGAACTGTGGTGATATT 59.050 43.478 0.00 0.00 45.32 1.28
3431 5303 3.548770 CCAGCATGAACTGTGGTGATAT 58.451 45.455 0.00 0.00 45.32 1.63
3432 5304 2.940971 GCCAGCATGAACTGTGGTGATA 60.941 50.000 0.00 0.00 45.32 2.15
3433 5305 1.830279 CCAGCATGAACTGTGGTGAT 58.170 50.000 0.00 0.00 45.32 3.06
3434 5306 0.890542 GCCAGCATGAACTGTGGTGA 60.891 55.000 0.00 0.00 45.32 4.02
3435 5307 1.582968 GCCAGCATGAACTGTGGTG 59.417 57.895 0.00 0.00 42.92 4.17
3436 5308 1.968017 CGCCAGCATGAACTGTGGT 60.968 57.895 0.00 0.00 39.69 4.16
3437 5309 2.872557 CGCCAGCATGAACTGTGG 59.127 61.111 0.00 0.00 39.69 4.17
3438 5310 2.177531 GCGCCAGCATGAACTGTG 59.822 61.111 0.00 0.00 44.35 3.66
3473 5345 1.784036 TTCGTGTGCTGGCATGTGTG 61.784 55.000 0.00 0.00 0.00 3.82
3474 5346 0.890542 ATTCGTGTGCTGGCATGTGT 60.891 50.000 0.00 0.00 0.00 3.72
3475 5347 0.179181 GATTCGTGTGCTGGCATGTG 60.179 55.000 0.00 0.00 0.00 3.21
3476 5348 0.321919 AGATTCGTGTGCTGGCATGT 60.322 50.000 0.00 0.00 0.00 3.21
3477 5349 1.655484 TAGATTCGTGTGCTGGCATG 58.345 50.000 0.00 0.00 0.00 4.06
3478 5350 2.401583 TTAGATTCGTGTGCTGGCAT 57.598 45.000 0.00 0.00 0.00 4.40
3479 5351 2.177394 TTTAGATTCGTGTGCTGGCA 57.823 45.000 0.00 0.00 0.00 4.92
3480 5352 2.159517 CCTTTTAGATTCGTGTGCTGGC 60.160 50.000 0.00 0.00 0.00 4.85
3481 5353 3.074412 ACCTTTTAGATTCGTGTGCTGG 58.926 45.455 0.00 0.00 0.00 4.85
3482 5354 4.213270 TCAACCTTTTAGATTCGTGTGCTG 59.787 41.667 0.00 0.00 0.00 4.41
3483 5355 4.385825 TCAACCTTTTAGATTCGTGTGCT 58.614 39.130 0.00 0.00 0.00 4.40
3484 5356 4.742438 TCAACCTTTTAGATTCGTGTGC 57.258 40.909 0.00 0.00 0.00 4.57
3485 5357 5.569059 GCATTCAACCTTTTAGATTCGTGTG 59.431 40.000 0.00 0.00 0.00 3.82
3486 5358 5.473504 AGCATTCAACCTTTTAGATTCGTGT 59.526 36.000 0.00 0.00 0.00 4.49
3487 5359 5.942872 AGCATTCAACCTTTTAGATTCGTG 58.057 37.500 0.00 0.00 0.00 4.35
3488 5360 6.575162 AAGCATTCAACCTTTTAGATTCGT 57.425 33.333 0.00 0.00 0.00 3.85
3489 5361 7.619982 GCAAAAGCATTCAACCTTTTAGATTCG 60.620 37.037 0.00 0.00 38.74 3.34
3490 5362 7.386025 AGCAAAAGCATTCAACCTTTTAGATTC 59.614 33.333 0.00 0.00 38.74 2.52
3491 5363 7.219322 AGCAAAAGCATTCAACCTTTTAGATT 58.781 30.769 0.00 0.00 38.74 2.40
3492 5364 6.762333 AGCAAAAGCATTCAACCTTTTAGAT 58.238 32.000 0.00 0.00 38.74 1.98
3493 5365 6.160576 AGCAAAAGCATTCAACCTTTTAGA 57.839 33.333 0.00 0.00 38.74 2.10
3494 5366 5.117592 CGAGCAAAAGCATTCAACCTTTTAG 59.882 40.000 0.00 0.00 38.74 1.85
3495 5367 4.981674 CGAGCAAAAGCATTCAACCTTTTA 59.018 37.500 0.00 0.00 38.74 1.52
3496 5368 3.803778 CGAGCAAAAGCATTCAACCTTTT 59.196 39.130 0.00 0.00 40.74 2.27
3497 5369 3.383761 CGAGCAAAAGCATTCAACCTTT 58.616 40.909 0.00 0.00 32.98 3.11
3498 5370 2.288395 CCGAGCAAAAGCATTCAACCTT 60.288 45.455 0.00 0.00 0.00 3.50
3499 5371 1.270550 CCGAGCAAAAGCATTCAACCT 59.729 47.619 0.00 0.00 0.00 3.50
3500 5372 1.701704 CCGAGCAAAAGCATTCAACC 58.298 50.000 0.00 0.00 0.00 3.77
3501 5373 1.063031 GCCGAGCAAAAGCATTCAAC 58.937 50.000 0.00 0.00 0.00 3.18
3502 5374 0.387112 CGCCGAGCAAAAGCATTCAA 60.387 50.000 0.00 0.00 0.00 2.69
3503 5375 1.209898 CGCCGAGCAAAAGCATTCA 59.790 52.632 0.00 0.00 0.00 2.57
3504 5376 4.062183 CGCCGAGCAAAAGCATTC 57.938 55.556 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.