Multiple sequence alignment - TraesCS5A01G402500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G402500 chr5A 100.000 4835 0 0 1 4835 595143148 595147982 0.000000e+00 8929.0
1 TraesCS5A01G402500 chr5A 73.963 1037 215 30 1245 2252 74478114 74479124 7.650000e-98 368.0
2 TraesCS5A01G402500 chr5B 96.393 3965 106 21 782 4714 583175940 583179899 0.000000e+00 6495.0
3 TraesCS5A01G402500 chr5B 87.840 699 49 14 9 686 583174841 583175524 0.000000e+00 787.0
4 TraesCS5A01G402500 chr5D 96.917 3827 90 17 548 4368 475691676 475695480 0.000000e+00 6388.0
5 TraesCS5A01G402500 chr5D 92.806 417 22 2 4419 4833 475695482 475695892 8.960000e-167 597.0
6 TraesCS5A01G402500 chr5D 87.915 422 26 3 37 457 475691177 475691574 1.570000e-129 473.0
7 TraesCS5A01G402500 chr5D 74.131 1036 218 29 1245 2252 77577765 77578778 2.730000e-102 383.0
8 TraesCS5A01G402500 chr7D 86.585 82 5 3 4172 4253 504755466 504755541 8.620000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G402500 chr5A 595143148 595147982 4834 False 8929 8929 100.0000 1 4835 1 chr5A.!!$F2 4834
1 TraesCS5A01G402500 chr5A 74478114 74479124 1010 False 368 368 73.9630 1245 2252 1 chr5A.!!$F1 1007
2 TraesCS5A01G402500 chr5B 583174841 583179899 5058 False 3641 6495 92.1165 9 4714 2 chr5B.!!$F1 4705
3 TraesCS5A01G402500 chr5D 475691177 475695892 4715 False 2486 6388 92.5460 37 4833 3 chr5D.!!$F2 4796
4 TraesCS5A01G402500 chr5D 77577765 77578778 1013 False 383 383 74.1310 1245 2252 1 chr5D.!!$F1 1007

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
847 1214 0.535797 CAGAAACCCTAGGACGGACC 59.464 60.0 11.48 0.0 39.35 4.46 F
2316 2713 1.095600 CAATCGAGGAGGAGTCGTCA 58.904 55.0 14.42 0.0 37.43 4.35 F
2668 3065 0.106918 AAAGGTGCCGTCCAAACTGA 60.107 50.0 0.00 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2542 2939 1.004745 ACCAAGTGGACTATTGCCCAG 59.995 52.381 3.83 0.0 38.94 4.45 R
3159 3556 0.106868 TCTCCCCAGCATCAGCATTG 60.107 55.000 0.00 0.0 45.49 2.82 R
4557 4979 1.135489 TCGGACGCTTAGTGCAAGTAG 60.135 52.381 0.00 0.0 41.69 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.658757 CGGGGTGATTTTTCACAATGT 57.341 42.857 8.25 0.00 42.07 2.71
29 30 0.945099 TTTCACAATGTTACGGCGCA 59.055 45.000 10.83 0.00 0.00 6.09
30 31 1.160989 TTCACAATGTTACGGCGCAT 58.839 45.000 10.83 0.00 0.00 4.73
32 33 2.347731 TCACAATGTTACGGCGCATTA 58.652 42.857 10.83 0.00 34.01 1.90
69 70 2.100584 GCAACAATAATGATCCGGCCAA 59.899 45.455 2.24 0.00 0.00 4.52
98 99 1.079127 CACTGTGGGGGTTAGAGCG 60.079 63.158 0.00 0.00 0.00 5.03
119 120 2.502295 GGGAGCTTCCATTAGCATCAG 58.498 52.381 6.02 0.00 43.68 2.90
127 128 7.460071 AGCTTCCATTAGCATCAGAATTAGAT 58.540 34.615 0.00 0.00 43.68 1.98
128 129 7.390996 AGCTTCCATTAGCATCAGAATTAGATG 59.609 37.037 13.41 13.41 43.68 2.90
203 204 1.833630 GACTGACCATGGTGAGATGGA 59.166 52.381 34.45 4.16 45.24 3.41
347 349 4.677182 ACCTGGCATTATTCAAACCTTCT 58.323 39.130 0.00 0.00 0.00 2.85
369 371 6.601332 TCTCATATTATTCAACAACCCTCCC 58.399 40.000 0.00 0.00 0.00 4.30
421 423 2.299867 ACACATTGCATTTGACCTTCCC 59.700 45.455 4.32 0.00 0.00 3.97
440 442 3.882888 TCCCTGTGTAAAAGTCAGCAAAG 59.117 43.478 0.00 0.00 0.00 2.77
457 459 6.716628 TCAGCAAAGTCATCTAAAAATGGAGT 59.283 34.615 0.00 0.00 0.00 3.85
473 487 9.710900 AAAAATGGAGTCTGTAAAAATTCCATC 57.289 29.630 4.46 0.00 42.85 3.51
491 512 8.916628 ATTCCATCTTCTCTTTAAATCTAGGC 57.083 34.615 0.00 0.00 0.00 3.93
506 531 6.396829 AATCTAGGCATAATGAACTTTGGC 57.603 37.500 0.00 0.00 35.09 4.52
598 645 1.833187 TGGAGATGGGAAATAGGGGG 58.167 55.000 0.00 0.00 0.00 5.40
599 646 1.299942 TGGAGATGGGAAATAGGGGGA 59.700 52.381 0.00 0.00 0.00 4.81
600 647 2.294879 TGGAGATGGGAAATAGGGGGAA 60.295 50.000 0.00 0.00 0.00 3.97
601 648 2.376855 GGAGATGGGAAATAGGGGGAAG 59.623 54.545 0.00 0.00 0.00 3.46
602 649 3.327439 GAGATGGGAAATAGGGGGAAGA 58.673 50.000 0.00 0.00 0.00 2.87
603 650 3.919554 GAGATGGGAAATAGGGGGAAGAT 59.080 47.826 0.00 0.00 0.00 2.40
697 744 2.823747 GGTGTGTTCCAATTAACTCCCC 59.176 50.000 0.00 0.00 0.00 4.81
743 790 4.851214 GCTCGCTCCTCTCCCCCT 62.851 72.222 0.00 0.00 0.00 4.79
744 791 2.520741 CTCGCTCCTCTCCCCCTC 60.521 72.222 0.00 0.00 0.00 4.30
842 1209 1.221021 CCCGCAGAAACCCTAGGAC 59.779 63.158 11.48 0.00 0.00 3.85
845 1212 1.601419 CGCAGAAACCCTAGGACGGA 61.601 60.000 11.48 0.00 0.00 4.69
847 1214 0.535797 CAGAAACCCTAGGACGGACC 59.464 60.000 11.48 0.00 39.35 4.46
947 1314 3.087906 GATGGTGTAGGGGCGGGT 61.088 66.667 0.00 0.00 0.00 5.28
1059 1429 1.354506 GATGCTCATGGACAAGCGC 59.645 57.895 0.00 0.00 41.51 5.92
1950 2347 4.394712 CCGGTGCAGTCCAGGGTC 62.395 72.222 0.00 0.00 0.00 4.46
2055 2452 1.482593 CCTAAGGACATGGACTCGCTT 59.517 52.381 0.00 0.00 0.00 4.68
2127 2524 3.460995 GGAGCTGATCCTACGGGG 58.539 66.667 4.35 0.00 45.64 5.73
2316 2713 1.095600 CAATCGAGGAGGAGTCGTCA 58.904 55.000 14.42 0.00 37.43 4.35
2373 2770 4.260355 TCGGGCGCGTATTCCTCG 62.260 66.667 23.19 1.46 0.00 4.63
2542 2939 1.283321 AGGGCTCTTTCTGGGTTGATC 59.717 52.381 0.00 0.00 0.00 2.92
2548 2945 0.776810 TTTCTGGGTTGATCTGGGCA 59.223 50.000 0.00 0.00 0.00 5.36
2665 3062 1.362355 CCAAAGGTGCCGTCCAAAC 59.638 57.895 0.00 0.00 0.00 2.93
2668 3065 0.106918 AAAGGTGCCGTCCAAACTGA 60.107 50.000 0.00 0.00 0.00 3.41
2793 3190 5.754782 TGTTCATATAATGGCAAGGTCAGT 58.245 37.500 0.00 0.00 0.00 3.41
2913 3310 1.301479 ACAAGGAAGTTCGGCGTCC 60.301 57.895 6.85 6.46 44.60 4.79
3095 3492 2.224646 GGCTCTTTGGAGTGGAAGAAGT 60.225 50.000 0.00 0.00 41.38 3.01
3149 3546 6.617782 ATCATTCACCATGGAGGATAGTAG 57.382 41.667 21.47 0.00 41.22 2.57
3159 3556 1.001158 GAGGATAGTAGGCTGTGTCGC 60.001 57.143 0.00 0.00 0.00 5.19
3168 3565 1.651240 GGCTGTGTCGCAATGCTGAT 61.651 55.000 2.94 0.00 0.00 2.90
3278 3678 4.870426 GCGAGAACCTGAAATCATCTGTAA 59.130 41.667 0.00 0.00 0.00 2.41
3447 3847 4.753107 GGCCCGAAGATAAAATATGAACGA 59.247 41.667 0.00 0.00 0.00 3.85
3816 4216 0.105760 AGAGGCTGTCATCGATCCCT 60.106 55.000 0.00 0.00 0.00 4.20
3977 4378 1.472376 GGAAGAGGAGATGTCAAGGCG 60.472 57.143 0.00 0.00 0.00 5.52
4002 4403 6.183360 GCTTTTGCCTATAGCTTTTGTATCCA 60.183 38.462 0.00 0.00 44.23 3.41
4126 4529 4.567159 GCTCGTAGATTTTGGTCGAGATTT 59.433 41.667 15.27 0.00 46.92 2.17
4127 4530 5.063564 GCTCGTAGATTTTGGTCGAGATTTT 59.936 40.000 15.27 0.00 46.92 1.82
4300 4706 2.372172 TCCACCCCTTTTCAGTTCTCTC 59.628 50.000 0.00 0.00 0.00 3.20
4328 4734 1.672881 CTTGAAATCATCCGCTGTCCC 59.327 52.381 0.00 0.00 0.00 4.46
4352 4758 4.335315 CGGTATGTTTTGTATGGATGCTGT 59.665 41.667 0.00 0.00 0.00 4.40
4353 4759 5.504010 CGGTATGTTTTGTATGGATGCTGTC 60.504 44.000 0.00 0.00 0.00 3.51
4356 4762 7.282224 GGTATGTTTTGTATGGATGCTGTCTTA 59.718 37.037 0.00 0.00 0.00 2.10
4372 4778 5.426504 CTGTCTTATTGGTCAATGAGCTCT 58.573 41.667 16.19 3.60 35.24 4.09
4392 4798 5.564259 GCTCTTCATGCTGTGTCTGATTTTT 60.564 40.000 0.00 0.00 0.00 1.94
4393 4799 6.005583 TCTTCATGCTGTGTCTGATTTTTC 57.994 37.500 0.00 0.00 0.00 2.29
4396 4802 6.395426 TCATGCTGTGTCTGATTTTTCTTT 57.605 33.333 0.00 0.00 0.00 2.52
4397 4803 6.808829 TCATGCTGTGTCTGATTTTTCTTTT 58.191 32.000 0.00 0.00 0.00 2.27
4398 4804 6.919662 TCATGCTGTGTCTGATTTTTCTTTTC 59.080 34.615 0.00 0.00 0.00 2.29
4432 4845 4.625311 TGTGTTGTGTCTGATATTACTGCG 59.375 41.667 0.00 0.00 0.00 5.18
4543 4962 4.685628 ACTGTTGTTGTGTTTCTGCTTTTG 59.314 37.500 0.00 0.00 0.00 2.44
4700 5122 5.391312 AAGTTGCTTCTTTTCTGTTGTGT 57.609 34.783 0.00 0.00 0.00 3.72
4738 5160 1.735018 TCGACAGTGTTGGTTGTTGTG 59.265 47.619 10.71 0.00 31.88 3.33
4742 5164 2.290641 ACAGTGTTGGTTGTTGTGGAGA 60.291 45.455 0.00 0.00 0.00 3.71
4743 5165 2.951642 CAGTGTTGGTTGTTGTGGAGAT 59.048 45.455 0.00 0.00 0.00 2.75
4744 5166 2.951642 AGTGTTGGTTGTTGTGGAGATG 59.048 45.455 0.00 0.00 0.00 2.90
4745 5167 2.034558 GTGTTGGTTGTTGTGGAGATGG 59.965 50.000 0.00 0.00 0.00 3.51
4746 5168 2.306847 GTTGGTTGTTGTGGAGATGGT 58.693 47.619 0.00 0.00 0.00 3.55
4747 5169 3.117851 TGTTGGTTGTTGTGGAGATGGTA 60.118 43.478 0.00 0.00 0.00 3.25
4758 5180 3.132467 GTGGAGATGGTACTGGTAGGTTC 59.868 52.174 0.00 0.00 0.00 3.62
4762 5184 1.272807 TGGTACTGGTAGGTTCTGGC 58.727 55.000 0.00 0.00 0.00 4.85
4771 5193 1.241315 TAGGTTCTGGCCTTTTGCGC 61.241 55.000 3.32 0.00 42.61 6.09
4774 5196 0.940991 GTTCTGGCCTTTTGCGCTTG 60.941 55.000 9.73 0.00 42.61 4.01
4793 5215 2.125512 GCGGCGTCTGAATGAGGT 60.126 61.111 9.37 0.00 33.47 3.85
4794 5216 2.456119 GCGGCGTCTGAATGAGGTG 61.456 63.158 9.37 0.00 33.47 4.00
4795 5217 2.456119 CGGCGTCTGAATGAGGTGC 61.456 63.158 0.00 0.00 33.47 5.01
4833 5255 2.517959 TGTTGGCTTGAAGAAGATGGG 58.482 47.619 0.00 0.00 0.00 4.00
4834 5256 2.158475 TGTTGGCTTGAAGAAGATGGGT 60.158 45.455 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.658757 ACATTGTGAAAAATCACCCCG 57.341 42.857 6.51 0.00 39.72 5.73
1 2 4.920927 CGTAACATTGTGAAAAATCACCCC 59.079 41.667 6.51 0.00 39.72 4.95
2 3 4.920927 CCGTAACATTGTGAAAAATCACCC 59.079 41.667 6.51 0.00 39.72 4.61
3 4 4.384547 GCCGTAACATTGTGAAAAATCACC 59.615 41.667 6.51 0.00 39.72 4.02
4 5 4.087930 CGCCGTAACATTGTGAAAAATCAC 59.912 41.667 2.09 2.09 40.78 3.06
5 6 4.222886 CGCCGTAACATTGTGAAAAATCA 58.777 39.130 0.00 0.00 0.00 2.57
6 7 3.058913 GCGCCGTAACATTGTGAAAAATC 59.941 43.478 0.00 0.00 0.00 2.17
7 8 2.983803 GCGCCGTAACATTGTGAAAAAT 59.016 40.909 0.00 0.00 0.00 1.82
17 18 3.173668 TCTTCTAATGCGCCGTAACAT 57.826 42.857 4.18 0.00 0.00 2.71
98 99 1.143684 TGATGCTAATGGAAGCTCCCC 59.856 52.381 0.00 0.00 43.19 4.81
119 120 0.185175 AACGGGGCCCCATCTAATTC 59.815 55.000 40.06 10.42 35.37 2.17
128 129 2.380285 TATCCTCAAACGGGGCCCC 61.380 63.158 33.22 33.22 0.00 5.80
203 204 5.405935 AGTCCTTTGAGTTTGCTTGTTTT 57.594 34.783 0.00 0.00 0.00 2.43
347 349 5.131308 TCGGGAGGGTTGTTGAATAATATGA 59.869 40.000 0.00 0.00 0.00 2.15
421 423 5.484173 TGACTTTGCTGACTTTTACACAG 57.516 39.130 0.00 0.00 35.14 3.66
570 615 2.133281 TCCCATCTCCAATGCAACTG 57.867 50.000 0.00 0.00 0.00 3.16
571 616 2.905415 TTCCCATCTCCAATGCAACT 57.095 45.000 0.00 0.00 0.00 3.16
598 645 5.067413 TGCCGATTCCCGTATATCTATCTTC 59.933 44.000 0.00 0.00 36.31 2.87
599 646 4.954202 TGCCGATTCCCGTATATCTATCTT 59.046 41.667 0.00 0.00 36.31 2.40
600 647 4.533815 TGCCGATTCCCGTATATCTATCT 58.466 43.478 0.00 0.00 36.31 1.98
601 648 4.913335 TGCCGATTCCCGTATATCTATC 57.087 45.455 0.00 0.00 36.31 2.08
602 649 5.871396 AATGCCGATTCCCGTATATCTAT 57.129 39.130 0.00 0.00 36.31 1.98
603 650 6.778834 TTAATGCCGATTCCCGTATATCTA 57.221 37.500 0.00 0.00 36.31 1.98
829 1196 0.616964 GGGTCCGTCCTAGGGTTTCT 60.617 60.000 9.46 0.00 36.25 2.52
830 1197 1.620739 GGGGTCCGTCCTAGGGTTTC 61.621 65.000 9.46 0.00 36.25 2.78
1365 1744 2.507324 GAGAGGAACGTGGCGAGC 60.507 66.667 0.00 0.00 0.00 5.03
1514 1908 0.392729 GAAGGAGACGGAGGAGTCGA 60.393 60.000 0.00 0.00 45.26 4.20
1602 1999 2.105128 CTCCGGATGTCGTGCTCC 59.895 66.667 3.57 0.00 37.11 4.70
1615 2012 2.087462 TAGTCCATGATGCGGCTCCG 62.087 60.000 3.56 3.56 43.09 4.63
1950 2347 1.019278 ATGAGTACTTTGCGCCGGTG 61.019 55.000 11.67 11.67 0.00 4.94
2055 2452 1.890041 CCGGAACAACGACAAGCCA 60.890 57.895 0.00 0.00 35.47 4.75
2127 2524 2.925306 CTTGATGAGCAAGCAGCCAAAC 60.925 50.000 0.00 0.00 46.67 2.93
2316 2713 1.873591 GCTTGGTGACTGTTCATCGTT 59.126 47.619 0.00 0.00 35.34 3.85
2373 2770 2.284995 ACCTCCCTCACCTGAGCC 60.285 66.667 0.00 0.00 40.75 4.70
2542 2939 1.004745 ACCAAGTGGACTATTGCCCAG 59.995 52.381 3.83 0.00 38.94 4.45
2548 2945 4.287766 GGTCTGAACCAAGTGGACTATT 57.712 45.455 3.83 0.00 45.68 1.73
2658 3055 1.239347 GGCTCCTTGTCAGTTTGGAC 58.761 55.000 0.00 0.00 38.29 4.02
2665 3062 2.859165 TAAACAGGGCTCCTTGTCAG 57.141 50.000 4.08 0.00 0.00 3.51
2668 3065 2.375174 TGTCATAAACAGGGCTCCTTGT 59.625 45.455 0.00 0.00 32.81 3.16
2793 3190 5.029807 TGCCGGTATATGAACAATCTTCA 57.970 39.130 1.90 0.00 0.00 3.02
2913 3310 1.671556 GCAGCATAACCCCCAAAAACG 60.672 52.381 0.00 0.00 0.00 3.60
3095 3492 1.338674 CCATACTTGGCACTCGTTCCA 60.339 52.381 0.00 0.00 35.85 3.53
3149 3546 1.651240 ATCAGCATTGCGACACAGCC 61.651 55.000 2.38 0.00 36.02 4.85
3159 3556 0.106868 TCTCCCCAGCATCAGCATTG 60.107 55.000 0.00 0.00 45.49 2.82
3168 3565 0.326904 ATCCAGATGTCTCCCCAGCA 60.327 55.000 0.00 0.00 0.00 4.41
3240 3640 0.394192 CTCGCCTGCCATCCTGAATA 59.606 55.000 0.00 0.00 0.00 1.75
3278 3678 3.144657 TGTTCACATGATCAAGGTGCT 57.855 42.857 20.32 0.00 32.69 4.40
3816 4216 2.760650 ACACTATCGTTCTGCATCCTCA 59.239 45.455 0.00 0.00 0.00 3.86
3829 4229 5.589192 ACGGAAATCCTCTAAACACTATCG 58.411 41.667 0.00 0.00 0.00 2.92
3977 4378 6.209361 GGATACAAAAGCTATAGGCAAAAGC 58.791 40.000 1.04 0.00 44.79 3.51
4002 4403 2.397044 TGCCAAGGGGAGACATTTTT 57.603 45.000 0.00 0.00 35.59 1.94
4300 4706 4.083110 AGCGGATGATTTCAAGTTTGACAG 60.083 41.667 0.00 0.00 36.83 3.51
4328 4734 3.882888 AGCATCCATACAAAACATACCGG 59.117 43.478 0.00 0.00 0.00 5.28
4352 4758 6.053632 TGAAGAGCTCATTGACCAATAAGA 57.946 37.500 17.77 0.00 0.00 2.10
4353 4759 6.726230 CATGAAGAGCTCATTGACCAATAAG 58.274 40.000 17.77 0.00 42.46 1.73
4356 4762 3.380637 GCATGAAGAGCTCATTGACCAAT 59.619 43.478 17.77 0.00 42.46 3.16
4372 4778 6.395426 AAGAAAAATCAGACACAGCATGAA 57.605 33.333 0.00 0.00 39.69 2.57
4503 4922 2.169769 ACAGTGAGTCGGAAAGAAACCA 59.830 45.455 0.00 0.00 0.00 3.67
4543 4962 3.191162 TGCAAGTAGACAACATCAATGCC 59.809 43.478 0.00 0.00 0.00 4.40
4557 4979 1.135489 TCGGACGCTTAGTGCAAGTAG 60.135 52.381 0.00 0.00 41.69 2.57
4572 4994 2.049228 CACAACAACGACTACTCGGAC 58.951 52.381 0.00 0.00 44.80 4.79
4618 5040 2.202756 GGCCGTTCTAGTCAGCGG 60.203 66.667 2.78 2.78 46.17 5.52
4700 5122 1.065401 CGACAAGCTTTCCAAGTGCAA 59.935 47.619 0.00 0.00 0.00 4.08
4738 5160 3.385111 CAGAACCTACCAGTACCATCTCC 59.615 52.174 0.00 0.00 0.00 3.71
4742 5164 1.838077 GCCAGAACCTACCAGTACCAT 59.162 52.381 0.00 0.00 0.00 3.55
4743 5165 1.272807 GCCAGAACCTACCAGTACCA 58.727 55.000 0.00 0.00 0.00 3.25
4744 5166 0.540454 GGCCAGAACCTACCAGTACC 59.460 60.000 0.00 0.00 0.00 3.34
4745 5167 1.569653 AGGCCAGAACCTACCAGTAC 58.430 55.000 5.01 0.00 38.67 2.73
4746 5168 2.337359 AAGGCCAGAACCTACCAGTA 57.663 50.000 5.01 0.00 39.93 2.74
4747 5169 1.446016 AAAGGCCAGAACCTACCAGT 58.554 50.000 5.01 0.00 39.93 4.00
4758 5180 2.048877 CCAAGCGCAAAAGGCCAG 60.049 61.111 11.47 0.00 40.31 4.85
4771 5193 2.436646 ATTCAGACGCCGCCCAAG 60.437 61.111 0.00 0.00 0.00 3.61
4774 5196 2.892425 CTCATTCAGACGCCGCCC 60.892 66.667 0.00 0.00 0.00 6.13
4793 5215 3.138304 CAAGCAACAGTACTTACCAGCA 58.862 45.455 0.00 0.00 0.00 4.41
4794 5216 3.139077 ACAAGCAACAGTACTTACCAGC 58.861 45.455 0.00 0.00 0.00 4.85
4795 5217 4.024048 CCAACAAGCAACAGTACTTACCAG 60.024 45.833 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.