Multiple sequence alignment - TraesCS5A01G402100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G402100 chr5A 100.000 4230 0 0 1 4230 594965348 594961119 0.000000e+00 7812.0
1 TraesCS5A01G402100 chr5A 78.022 273 47 11 2207 2468 451480058 451479788 4.380000e-35 159.0
2 TraesCS5A01G402100 chr5A 88.608 79 9 0 997 1075 451480977 451480899 3.480000e-16 97.1
3 TraesCS5A01G402100 chr5B 91.214 3369 195 49 325 3637 582891992 582888669 0.000000e+00 4488.0
4 TraesCS5A01G402100 chr5B 89.703 437 37 5 3786 4216 582888518 582888084 6.180000e-153 551.0
5 TraesCS5A01G402100 chr5B 89.274 317 29 4 1 315 700196539 700196226 3.960000e-105 392.0
6 TraesCS5A01G402100 chr5B 74.102 529 106 25 1963 2467 411931341 411930820 5.580000e-44 189.0
7 TraesCS5A01G402100 chr5B 87.342 79 10 0 997 1075 411932010 411931932 1.620000e-14 91.6
8 TraesCS5A01G402100 chr5D 92.938 1600 73 19 325 1904 475512178 475510599 0.000000e+00 2292.0
9 TraesCS5A01G402100 chr5D 90.085 1059 50 23 2678 3703 475509829 475508793 0.000000e+00 1323.0
10 TraesCS5A01G402100 chr5D 93.137 816 45 5 1891 2699 475510654 475509843 0.000000e+00 1186.0
11 TraesCS5A01G402100 chr5D 87.017 362 29 9 3857 4216 475508620 475508275 3.960000e-105 392.0
12 TraesCS5A01G402100 chr5D 79.927 274 42 10 2206 2468 351006445 351006174 5.580000e-44 189.0
13 TraesCS5A01G402100 chr5D 88.000 100 2 2 3786 3875 475508729 475508630 4.470000e-20 110.0
14 TraesCS5A01G402100 chr5D 84.071 113 16 2 3973 4083 475508620 475508508 1.610000e-19 108.0
15 TraesCS5A01G402100 chr5D 88.608 79 9 0 997 1075 351007372 351007294 3.480000e-16 97.1
16 TraesCS5A01G402100 chr3B 89.590 317 27 5 1 315 780286559 780286247 8.520000e-107 398.0
17 TraesCS5A01G402100 chr3B 88.785 321 31 4 1 319 3751266 3751583 5.130000e-104 388.0
18 TraesCS5A01G402100 chr7A 89.274 317 28 5 1 315 460311408 460311096 3.960000e-105 392.0
19 TraesCS5A01G402100 chr6B 89.274 317 29 4 1 315 137414354 137414041 3.960000e-105 392.0
20 TraesCS5A01G402100 chr6B 88.959 317 30 4 1 315 40444685 40444998 1.840000e-103 387.0
21 TraesCS5A01G402100 chr2D 89.164 323 24 7 1 315 626118094 626117775 3.960000e-105 392.0
22 TraesCS5A01G402100 chr2A 89.274 317 29 4 1 315 29595657 29595970 3.960000e-105 392.0
23 TraesCS5A01G402100 chr2B 89.423 312 29 3 1 310 25343866 25344175 1.430000e-104 390.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G402100 chr5A 594961119 594965348 4229 True 7812.000000 7812 100.0000 1 4230 1 chr5A.!!$R1 4229
1 TraesCS5A01G402100 chr5B 582888084 582891992 3908 True 2519.500000 4488 90.4585 325 4216 2 chr5B.!!$R3 3891
2 TraesCS5A01G402100 chr5D 475508275 475512178 3903 True 901.833333 2292 89.2080 325 4216 6 chr5D.!!$R2 3891

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
253 254 0.032815 GAGAAGGGATGGACTAGCGC 59.967 60.0 0.00 0.0 0.0 5.92 F
316 317 0.037232 GGCTGGCTACGTTGAGAGTT 60.037 55.0 0.00 0.0 0.0 3.01 F
790 796 0.691078 TGCCCATCCTCTAGACACCC 60.691 60.0 0.00 0.0 0.0 4.61 F
2264 2295 0.605319 TTGTGATCTTCCGTGCACCC 60.605 55.0 12.15 0.0 0.0 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1971 2001 0.178903 AGCAGGAGTTCACCCACCTA 60.179 55.000 0.0 0.0 0.00 3.08 R
2010 2040 1.270305 GGTACAGTCACAGCAGCAAGA 60.270 52.381 0.0 0.0 0.00 3.02 R
2563 2595 1.186200 CCTCATCTTGGACGACTCCA 58.814 55.000 0.0 0.0 45.68 3.86 R
3765 3901 0.451383 GTGCACGATGCCTGCAATAA 59.549 50.000 0.0 0.0 46.04 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.815384 TCGAAGACACACCTCCACA 58.185 52.632 0.00 0.00 0.00 4.17
32 33 0.387929 TCGAAGACACACCTCCACAC 59.612 55.000 0.00 0.00 0.00 3.82
33 34 0.939577 CGAAGACACACCTCCACACG 60.940 60.000 0.00 0.00 0.00 4.49
34 35 1.222115 GAAGACACACCTCCACACGC 61.222 60.000 0.00 0.00 0.00 5.34
35 36 2.660258 AAGACACACCTCCACACGCC 62.660 60.000 0.00 0.00 0.00 5.68
36 37 4.250305 ACACACCTCCACACGCCC 62.250 66.667 0.00 0.00 0.00 6.13
37 38 4.248842 CACACCTCCACACGCCCA 62.249 66.667 0.00 0.00 0.00 5.36
38 39 4.250305 ACACCTCCACACGCCCAC 62.250 66.667 0.00 0.00 0.00 4.61
42 43 4.082523 CTCCACACGCCCACCGAT 62.083 66.667 0.00 0.00 41.02 4.18
43 44 4.386951 TCCACACGCCCACCGATG 62.387 66.667 0.00 0.00 41.02 3.84
44 45 4.386951 CCACACGCCCACCGATGA 62.387 66.667 0.00 0.00 41.02 2.92
45 46 2.125147 CACACGCCCACCGATGAT 60.125 61.111 0.00 0.00 41.02 2.45
46 47 1.142965 CACACGCCCACCGATGATA 59.857 57.895 0.00 0.00 41.02 2.15
47 48 1.143183 ACACGCCCACCGATGATAC 59.857 57.895 0.00 0.00 41.02 2.24
48 49 1.327690 ACACGCCCACCGATGATACT 61.328 55.000 0.00 0.00 41.02 2.12
49 50 0.671796 CACGCCCACCGATGATACTA 59.328 55.000 0.00 0.00 41.02 1.82
50 51 0.672342 ACGCCCACCGATGATACTAC 59.328 55.000 0.00 0.00 41.02 2.73
51 52 0.671796 CGCCCACCGATGATACTACA 59.328 55.000 0.00 0.00 40.02 2.74
52 53 1.602165 CGCCCACCGATGATACTACAC 60.602 57.143 0.00 0.00 40.02 2.90
53 54 1.602165 GCCCACCGATGATACTACACG 60.602 57.143 0.00 0.00 0.00 4.49
54 55 1.602165 CCCACCGATGATACTACACGC 60.602 57.143 0.00 0.00 0.00 5.34
55 56 1.066454 CCACCGATGATACTACACGCA 59.934 52.381 0.00 0.00 0.00 5.24
56 57 2.288213 CCACCGATGATACTACACGCAT 60.288 50.000 0.00 0.00 0.00 4.73
57 58 2.980476 CACCGATGATACTACACGCATC 59.020 50.000 0.00 0.00 35.10 3.91
58 59 2.621526 ACCGATGATACTACACGCATCA 59.378 45.455 0.00 0.00 37.56 3.07
59 60 2.980476 CCGATGATACTACACGCATCAC 59.020 50.000 0.00 0.00 37.56 3.06
60 61 2.980476 CGATGATACTACACGCATCACC 59.020 50.000 0.00 0.00 37.56 4.02
61 62 2.485266 TGATACTACACGCATCACCG 57.515 50.000 0.00 0.00 0.00 4.94
62 63 1.066454 TGATACTACACGCATCACCGG 59.934 52.381 0.00 0.00 0.00 5.28
63 64 1.335810 GATACTACACGCATCACCGGA 59.664 52.381 9.46 0.00 0.00 5.14
64 65 1.175654 TACTACACGCATCACCGGAA 58.824 50.000 9.46 0.00 0.00 4.30
65 66 0.389426 ACTACACGCATCACCGGAAC 60.389 55.000 9.46 0.00 0.00 3.62
78 79 3.204418 GGAACGGGGACTAGACGG 58.796 66.667 0.00 0.00 0.00 4.79
79 80 1.379044 GGAACGGGGACTAGACGGA 60.379 63.158 0.00 0.00 0.00 4.69
80 81 1.382692 GGAACGGGGACTAGACGGAG 61.383 65.000 0.00 0.00 0.00 4.63
81 82 0.393537 GAACGGGGACTAGACGGAGA 60.394 60.000 0.00 0.00 0.00 3.71
82 83 0.394080 AACGGGGACTAGACGGAGAG 60.394 60.000 0.00 0.00 0.00 3.20
83 84 1.270414 ACGGGGACTAGACGGAGAGA 61.270 60.000 0.00 0.00 0.00 3.10
84 85 0.814812 CGGGGACTAGACGGAGAGAC 60.815 65.000 0.00 0.00 0.00 3.36
85 86 0.466007 GGGGACTAGACGGAGAGACC 60.466 65.000 0.00 0.00 0.00 3.85
86 87 0.547553 GGGACTAGACGGAGAGACCT 59.452 60.000 0.00 0.00 36.31 3.85
87 88 1.064537 GGGACTAGACGGAGAGACCTT 60.065 57.143 0.00 0.00 36.31 3.50
88 89 2.621147 GGGACTAGACGGAGAGACCTTT 60.621 54.545 0.00 0.00 36.31 3.11
89 90 3.371380 GGGACTAGACGGAGAGACCTTTA 60.371 52.174 0.00 0.00 36.31 1.85
90 91 4.463070 GGACTAGACGGAGAGACCTTTAT 58.537 47.826 0.00 0.00 36.31 1.40
91 92 4.888823 GGACTAGACGGAGAGACCTTTATT 59.111 45.833 0.00 0.00 36.31 1.40
92 93 5.360429 GGACTAGACGGAGAGACCTTTATTT 59.640 44.000 0.00 0.00 36.31 1.40
93 94 6.127394 GGACTAGACGGAGAGACCTTTATTTT 60.127 42.308 0.00 0.00 36.31 1.82
94 95 6.865411 ACTAGACGGAGAGACCTTTATTTTC 58.135 40.000 0.00 0.00 36.31 2.29
95 96 5.087391 AGACGGAGAGACCTTTATTTTCC 57.913 43.478 0.00 0.00 36.31 3.13
96 97 4.530946 AGACGGAGAGACCTTTATTTTCCA 59.469 41.667 0.00 0.00 36.31 3.53
97 98 5.189934 AGACGGAGAGACCTTTATTTTCCAT 59.810 40.000 0.00 0.00 36.31 3.41
98 99 5.429130 ACGGAGAGACCTTTATTTTCCATC 58.571 41.667 0.00 0.00 36.31 3.51
99 100 5.189934 ACGGAGAGACCTTTATTTTCCATCT 59.810 40.000 0.00 0.00 36.31 2.90
100 101 6.116126 CGGAGAGACCTTTATTTTCCATCTT 58.884 40.000 0.00 0.00 36.31 2.40
101 102 6.258947 CGGAGAGACCTTTATTTTCCATCTTC 59.741 42.308 0.00 0.00 36.31 2.87
102 103 7.112779 GGAGAGACCTTTATTTTCCATCTTCA 58.887 38.462 0.00 0.00 35.41 3.02
103 104 7.281999 GGAGAGACCTTTATTTTCCATCTTCAG 59.718 40.741 0.00 0.00 35.41 3.02
104 105 7.922382 AGAGACCTTTATTTTCCATCTTCAGA 58.078 34.615 0.00 0.00 0.00 3.27
105 106 8.046107 AGAGACCTTTATTTTCCATCTTCAGAG 58.954 37.037 0.00 0.00 0.00 3.35
106 107 7.922382 AGACCTTTATTTTCCATCTTCAGAGA 58.078 34.615 0.00 0.00 36.09 3.10
107 108 8.046107 AGACCTTTATTTTCCATCTTCAGAGAG 58.954 37.037 0.00 0.00 34.85 3.20
108 109 7.694093 ACCTTTATTTTCCATCTTCAGAGAGT 58.306 34.615 0.00 0.00 34.85 3.24
109 110 7.826744 ACCTTTATTTTCCATCTTCAGAGAGTC 59.173 37.037 0.00 0.00 34.85 3.36
110 111 8.046107 CCTTTATTTTCCATCTTCAGAGAGTCT 58.954 37.037 0.00 0.00 34.85 3.24
111 112 9.097257 CTTTATTTTCCATCTTCAGAGAGTCTC 57.903 37.037 12.54 12.54 34.85 3.36
112 113 5.413309 TTTTCCATCTTCAGAGAGTCTCC 57.587 43.478 16.74 0.00 34.85 3.71
113 114 2.649190 TCCATCTTCAGAGAGTCTCCG 58.351 52.381 16.74 6.79 34.85 4.63
114 115 1.066908 CCATCTTCAGAGAGTCTCCGC 59.933 57.143 16.74 0.00 34.85 5.54
115 116 1.066908 CATCTTCAGAGAGTCTCCGCC 59.933 57.143 16.74 0.00 34.85 6.13
116 117 1.027255 TCTTCAGAGAGTCTCCGCCG 61.027 60.000 16.74 3.55 0.00 6.46
117 118 1.303398 TTCAGAGAGTCTCCGCCGT 60.303 57.895 16.74 0.00 0.00 5.68
118 119 0.894184 TTCAGAGAGTCTCCGCCGTT 60.894 55.000 16.74 0.00 0.00 4.44
119 120 0.894184 TCAGAGAGTCTCCGCCGTTT 60.894 55.000 16.74 0.00 0.00 3.60
120 121 0.456995 CAGAGAGTCTCCGCCGTTTC 60.457 60.000 16.74 0.00 0.00 2.78
121 122 1.514443 GAGAGTCTCCGCCGTTTCG 60.514 63.158 9.15 0.00 0.00 3.46
122 123 3.179939 GAGTCTCCGCCGTTTCGC 61.180 66.667 0.00 0.00 0.00 4.70
123 124 4.736896 AGTCTCCGCCGTTTCGCC 62.737 66.667 0.00 0.00 0.00 5.54
124 125 4.736896 GTCTCCGCCGTTTCGCCT 62.737 66.667 0.00 0.00 0.00 5.52
125 126 3.998672 TCTCCGCCGTTTCGCCTT 61.999 61.111 0.00 0.00 0.00 4.35
126 127 3.488090 CTCCGCCGTTTCGCCTTC 61.488 66.667 0.00 0.00 0.00 3.46
129 130 3.788766 CGCCGTTTCGCCTTCCTG 61.789 66.667 0.00 0.00 0.00 3.86
130 131 2.358247 GCCGTTTCGCCTTCCTGA 60.358 61.111 0.00 0.00 0.00 3.86
131 132 2.391389 GCCGTTTCGCCTTCCTGAG 61.391 63.158 0.00 0.00 0.00 3.35
132 133 2.391389 CCGTTTCGCCTTCCTGAGC 61.391 63.158 0.00 0.00 0.00 4.26
133 134 1.667830 CGTTTCGCCTTCCTGAGCA 60.668 57.895 0.00 0.00 0.00 4.26
134 135 1.630244 CGTTTCGCCTTCCTGAGCAG 61.630 60.000 0.00 0.00 0.00 4.24
145 146 2.633860 CTGAGCAGGACACAAACCC 58.366 57.895 0.00 0.00 0.00 4.11
146 147 0.109342 CTGAGCAGGACACAAACCCT 59.891 55.000 0.00 0.00 0.00 4.34
147 148 1.347707 CTGAGCAGGACACAAACCCTA 59.652 52.381 0.00 0.00 0.00 3.53
148 149 1.771854 TGAGCAGGACACAAACCCTAA 59.228 47.619 0.00 0.00 0.00 2.69
149 150 2.152016 GAGCAGGACACAAACCCTAAC 58.848 52.381 0.00 0.00 0.00 2.34
150 151 1.493022 AGCAGGACACAAACCCTAACA 59.507 47.619 0.00 0.00 0.00 2.41
151 152 2.092103 AGCAGGACACAAACCCTAACAA 60.092 45.455 0.00 0.00 0.00 2.83
152 153 2.691011 GCAGGACACAAACCCTAACAAA 59.309 45.455 0.00 0.00 0.00 2.83
153 154 3.243401 GCAGGACACAAACCCTAACAAAG 60.243 47.826 0.00 0.00 0.00 2.77
154 155 2.956333 AGGACACAAACCCTAACAAAGC 59.044 45.455 0.00 0.00 0.00 3.51
155 156 2.035449 GGACACAAACCCTAACAAAGCC 59.965 50.000 0.00 0.00 0.00 4.35
156 157 2.035449 GACACAAACCCTAACAAAGCCC 59.965 50.000 0.00 0.00 0.00 5.19
157 158 1.000717 CACAAACCCTAACAAAGCCCG 60.001 52.381 0.00 0.00 0.00 6.13
158 159 1.133730 ACAAACCCTAACAAAGCCCGA 60.134 47.619 0.00 0.00 0.00 5.14
159 160 1.957877 CAAACCCTAACAAAGCCCGAA 59.042 47.619 0.00 0.00 0.00 4.30
160 161 2.362717 CAAACCCTAACAAAGCCCGAAA 59.637 45.455 0.00 0.00 0.00 3.46
161 162 2.368311 ACCCTAACAAAGCCCGAAAA 57.632 45.000 0.00 0.00 0.00 2.29
162 163 2.668625 ACCCTAACAAAGCCCGAAAAA 58.331 42.857 0.00 0.00 0.00 1.94
183 184 7.646548 AAAAAGATATAAAACAGAGCCCTCC 57.353 36.000 0.00 0.00 0.00 4.30
184 185 4.984146 AGATATAAAACAGAGCCCTCCC 57.016 45.455 0.00 0.00 0.00 4.30
185 186 4.307259 AGATATAAAACAGAGCCCTCCCA 58.693 43.478 0.00 0.00 0.00 4.37
186 187 2.808906 ATAAAACAGAGCCCTCCCAC 57.191 50.000 0.00 0.00 0.00 4.61
187 188 0.323629 TAAAACAGAGCCCTCCCACG 59.676 55.000 0.00 0.00 0.00 4.94
188 189 2.411765 AAAACAGAGCCCTCCCACGG 62.412 60.000 0.00 0.00 0.00 4.94
195 196 4.722700 CCCTCCCACGGGCAAGTG 62.723 72.222 0.00 5.51 41.53 3.16
208 209 1.565305 GCAAGTGCCGAGATCTACTG 58.435 55.000 0.00 0.00 34.31 2.74
209 210 1.565305 CAAGTGCCGAGATCTACTGC 58.435 55.000 0.00 0.00 0.00 4.40
210 211 0.101399 AAGTGCCGAGATCTACTGCG 59.899 55.000 0.00 0.00 0.00 5.18
211 212 1.946650 GTGCCGAGATCTACTGCGC 60.947 63.158 0.00 0.00 0.00 6.09
212 213 2.355244 GCCGAGATCTACTGCGCC 60.355 66.667 4.18 0.00 0.00 6.53
213 214 2.851071 GCCGAGATCTACTGCGCCT 61.851 63.158 4.18 0.00 0.00 5.52
214 215 1.284408 CCGAGATCTACTGCGCCTC 59.716 63.158 4.18 0.56 0.00 4.70
215 216 1.284408 CGAGATCTACTGCGCCTCC 59.716 63.158 4.18 0.00 0.00 4.30
216 217 1.448119 CGAGATCTACTGCGCCTCCA 61.448 60.000 4.18 0.00 0.00 3.86
217 218 0.965439 GAGATCTACTGCGCCTCCAT 59.035 55.000 4.18 0.00 0.00 3.41
218 219 0.678395 AGATCTACTGCGCCTCCATG 59.322 55.000 4.18 0.00 0.00 3.66
219 220 0.320247 GATCTACTGCGCCTCCATGG 60.320 60.000 4.97 4.97 39.35 3.66
237 238 2.365105 CCCTAAGGCCACCGGAGA 60.365 66.667 9.46 0.00 0.00 3.71
238 239 1.993391 CCCTAAGGCCACCGGAGAA 60.993 63.158 9.46 0.00 0.00 2.87
239 240 1.522569 CCTAAGGCCACCGGAGAAG 59.477 63.158 9.46 0.00 0.00 2.85
240 241 1.522569 CTAAGGCCACCGGAGAAGG 59.477 63.158 9.46 5.45 37.30 3.46
241 242 1.972660 CTAAGGCCACCGGAGAAGGG 61.973 65.000 9.46 2.12 35.02 3.95
242 243 2.465010 TAAGGCCACCGGAGAAGGGA 62.465 60.000 9.46 0.00 35.02 4.20
243 244 3.090532 GGCCACCGGAGAAGGGAT 61.091 66.667 9.46 0.00 35.02 3.85
244 245 2.190578 GCCACCGGAGAAGGGATG 59.809 66.667 9.46 0.00 35.02 3.51
245 246 2.911143 CCACCGGAGAAGGGATGG 59.089 66.667 9.46 0.00 35.02 3.51
246 247 1.689233 CCACCGGAGAAGGGATGGA 60.689 63.158 9.46 0.00 35.02 3.41
247 248 1.522569 CACCGGAGAAGGGATGGAC 59.477 63.158 9.46 0.00 35.02 4.02
248 249 0.978146 CACCGGAGAAGGGATGGACT 60.978 60.000 9.46 0.00 35.02 3.85
249 250 0.635009 ACCGGAGAAGGGATGGACTA 59.365 55.000 9.46 0.00 35.02 2.59
250 251 1.333177 CCGGAGAAGGGATGGACTAG 58.667 60.000 0.00 0.00 0.00 2.57
251 252 0.676736 CGGAGAAGGGATGGACTAGC 59.323 60.000 0.00 0.00 0.00 3.42
252 253 0.676736 GGAGAAGGGATGGACTAGCG 59.323 60.000 0.00 0.00 0.00 4.26
253 254 0.032815 GAGAAGGGATGGACTAGCGC 59.967 60.000 0.00 0.00 0.00 5.92
254 255 1.069935 GAAGGGATGGACTAGCGCC 59.930 63.158 2.29 0.00 0.00 6.53
255 256 2.701163 GAAGGGATGGACTAGCGCCG 62.701 65.000 2.29 0.00 0.00 6.46
256 257 4.301027 GGGATGGACTAGCGCCGG 62.301 72.222 2.29 0.00 0.00 6.13
257 258 4.971125 GGATGGACTAGCGCCGGC 62.971 72.222 19.07 19.07 40.37 6.13
276 277 2.434331 CCGGTGGGAGGCAAAGAA 59.566 61.111 0.00 0.00 34.06 2.52
277 278 1.971695 CCGGTGGGAGGCAAAGAAC 60.972 63.158 0.00 0.00 34.06 3.01
278 279 1.971695 CGGTGGGAGGCAAAGAACC 60.972 63.158 0.00 0.00 0.00 3.62
279 280 1.606601 GGTGGGAGGCAAAGAACCC 60.607 63.158 0.00 0.00 42.37 4.11
280 281 1.460699 GTGGGAGGCAAAGAACCCT 59.539 57.895 0.00 0.00 42.49 4.34
281 282 0.696501 GTGGGAGGCAAAGAACCCTA 59.303 55.000 0.00 0.00 42.49 3.53
282 283 0.991920 TGGGAGGCAAAGAACCCTAG 59.008 55.000 0.00 0.00 42.49 3.02
283 284 0.992695 GGGAGGCAAAGAACCCTAGT 59.007 55.000 0.00 0.00 39.28 2.57
284 285 1.354705 GGGAGGCAAAGAACCCTAGTT 59.645 52.381 0.00 0.00 39.28 2.24
285 286 2.225041 GGGAGGCAAAGAACCCTAGTTT 60.225 50.000 0.00 0.00 39.28 2.66
286 287 2.820197 GGAGGCAAAGAACCCTAGTTTG 59.180 50.000 0.00 0.00 35.94 2.93
288 289 2.331809 GCAAAGAACCCTAGTTTGCG 57.668 50.000 10.78 0.00 44.65 4.85
289 290 1.068541 GCAAAGAACCCTAGTTTGCGG 60.069 52.381 10.78 0.00 44.65 5.69
290 291 2.500229 CAAAGAACCCTAGTTTGCGGA 58.500 47.619 0.00 0.00 35.94 5.54
291 292 2.474410 AAGAACCCTAGTTTGCGGAG 57.526 50.000 0.00 0.00 35.94 4.63
292 293 1.640917 AGAACCCTAGTTTGCGGAGA 58.359 50.000 0.00 0.00 35.94 3.71
293 294 1.275573 AGAACCCTAGTTTGCGGAGAC 59.724 52.381 0.00 0.00 35.94 3.36
294 295 0.037605 AACCCTAGTTTGCGGAGACG 60.038 55.000 0.00 0.00 46.43 4.18
295 296 3.371569 AACCCTAGTTTGCGGAGACGG 62.372 57.143 0.00 0.00 44.52 4.79
305 306 3.075005 GGAGACGGTGGCTGGCTA 61.075 66.667 2.00 0.00 0.00 3.93
306 307 2.184579 GAGACGGTGGCTGGCTAC 59.815 66.667 2.00 0.38 0.00 3.58
307 308 3.701604 GAGACGGTGGCTGGCTACG 62.702 68.421 14.20 14.20 0.00 3.51
308 309 4.065281 GACGGTGGCTGGCTACGT 62.065 66.667 19.40 19.40 40.85 3.57
309 310 3.584868 GACGGTGGCTGGCTACGTT 62.585 63.158 20.02 8.36 37.96 3.99
310 311 3.118454 CGGTGGCTGGCTACGTTG 61.118 66.667 0.00 0.00 0.00 4.10
311 312 2.345991 GGTGGCTGGCTACGTTGA 59.654 61.111 0.00 0.00 0.00 3.18
312 313 1.741770 GGTGGCTGGCTACGTTGAG 60.742 63.158 0.00 0.00 0.00 3.02
313 314 1.292223 GTGGCTGGCTACGTTGAGA 59.708 57.895 0.00 0.00 0.00 3.27
314 315 0.737715 GTGGCTGGCTACGTTGAGAG 60.738 60.000 0.00 0.00 0.00 3.20
315 316 1.185618 TGGCTGGCTACGTTGAGAGT 61.186 55.000 0.00 0.00 0.00 3.24
316 317 0.037232 GGCTGGCTACGTTGAGAGTT 60.037 55.000 0.00 0.00 0.00 3.01
317 318 1.608283 GGCTGGCTACGTTGAGAGTTT 60.608 52.381 0.00 0.00 0.00 2.66
318 319 2.143925 GCTGGCTACGTTGAGAGTTTT 58.856 47.619 0.00 0.00 0.00 2.43
319 320 2.157863 GCTGGCTACGTTGAGAGTTTTC 59.842 50.000 0.00 0.00 0.00 2.29
320 321 2.400399 TGGCTACGTTGAGAGTTTTCG 58.600 47.619 0.00 0.00 0.00 3.46
321 322 2.034939 TGGCTACGTTGAGAGTTTTCGA 59.965 45.455 0.00 0.00 0.00 3.71
322 323 3.251571 GGCTACGTTGAGAGTTTTCGAT 58.748 45.455 0.00 0.00 0.00 3.59
323 324 3.678548 GGCTACGTTGAGAGTTTTCGATT 59.321 43.478 0.00 0.00 0.00 3.34
355 356 3.059166 GTGCATTCGTGCCAGAAAATTT 58.941 40.909 0.00 0.00 33.43 1.82
421 422 6.471233 AAAACTTTCTGAGGAGAAAAAGGG 57.529 37.500 0.00 0.00 45.57 3.95
422 423 5.388599 AACTTTCTGAGGAGAAAAAGGGA 57.611 39.130 0.00 0.00 45.57 4.20
423 424 5.388599 ACTTTCTGAGGAGAAAAAGGGAA 57.611 39.130 0.00 0.00 45.57 3.97
429 430 6.555711 TCTGAGGAGAAAAAGGGAAAATCAT 58.444 36.000 0.00 0.00 0.00 2.45
440 441 7.693969 AAAGGGAAAATCATAAGAGTCACAG 57.306 36.000 0.00 0.00 0.00 3.66
449 450 0.949397 AAGAGTCACAGTCGCACGTA 59.051 50.000 0.00 0.00 0.00 3.57
488 492 4.641094 ACAACACGGGTAAAAACAAGATGA 59.359 37.500 0.00 0.00 0.00 2.92
500 504 8.974408 GTAAAAACAAGATGACCCAAATAACAC 58.026 33.333 0.00 0.00 0.00 3.32
529 533 3.851403 CACCGCTCCGTTCAAATATTTTG 59.149 43.478 0.00 0.00 0.00 2.44
538 542 6.702282 TCCGTTCAAATATTTTGGGTTGAAAC 59.298 34.615 0.00 0.00 40.58 2.78
539 543 6.704050 CCGTTCAAATATTTTGGGTTGAAACT 59.296 34.615 0.00 0.00 40.58 2.66
540 544 7.868415 CCGTTCAAATATTTTGGGTTGAAACTA 59.132 33.333 0.00 0.00 40.58 2.24
541 545 8.696175 CGTTCAAATATTTTGGGTTGAAACTAC 58.304 33.333 0.00 0.00 40.58 2.73
542 546 8.984764 GTTCAAATATTTTGGGTTGAAACTACC 58.015 33.333 0.00 0.00 40.58 3.18
575 579 2.365105 CTCCGGCCTAGTTGGGGA 60.365 66.667 0.00 0.00 36.00 4.81
576 580 2.365105 TCCGGCCTAGTTGGGGAG 60.365 66.667 0.00 0.00 36.00 4.30
577 581 3.480133 CCGGCCTAGTTGGGGAGG 61.480 72.222 0.00 0.00 36.00 4.30
686 691 2.041405 CCTCCCTCCCTCCACCTC 60.041 72.222 0.00 0.00 0.00 3.85
772 778 4.899239 GCCTCCTGTCGCCGGATG 62.899 72.222 5.05 0.00 0.00 3.51
790 796 0.691078 TGCCCATCCTCTAGACACCC 60.691 60.000 0.00 0.00 0.00 4.61
793 799 0.757188 CCATCCTCTAGACACCCGCT 60.757 60.000 0.00 0.00 0.00 5.52
796 802 2.482333 CCTCTAGACACCCGCTCCG 61.482 68.421 0.00 0.00 0.00 4.63
800 806 2.267681 CTAGACACCCGCTCCGTCAC 62.268 65.000 0.00 0.00 31.92 3.67
801 807 3.986006 GACACCCGCTCCGTCACA 61.986 66.667 0.00 0.00 0.00 3.58
803 809 3.041940 CACCCGCTCCGTCACAAC 61.042 66.667 0.00 0.00 0.00 3.32
804 810 4.309950 ACCCGCTCCGTCACAACC 62.310 66.667 0.00 0.00 0.00 3.77
805 811 4.003788 CCCGCTCCGTCACAACCT 62.004 66.667 0.00 0.00 0.00 3.50
806 812 2.738521 CCGCTCCGTCACAACCTG 60.739 66.667 0.00 0.00 0.00 4.00
813 821 1.959226 CGTCACAACCTGAACCCCG 60.959 63.158 0.00 0.00 0.00 5.73
820 828 2.685380 CCTGAACCCCGCTCCTCT 60.685 66.667 0.00 0.00 0.00 3.69
824 832 4.332543 AACCCCGCTCCTCTCCCA 62.333 66.667 0.00 0.00 0.00 4.37
826 834 4.465446 CCCCGCTCCTCTCCCAGA 62.465 72.222 0.00 0.00 0.00 3.86
851 859 1.591703 GTGTCAGCATCCGACTCCA 59.408 57.895 0.00 0.00 34.37 3.86
970 979 3.711814 TGAGATCCGGCCGCCAAA 61.712 61.111 22.85 4.72 0.00 3.28
971 980 2.897350 GAGATCCGGCCGCCAAAG 60.897 66.667 22.85 5.67 0.00 2.77
972 981 3.385749 GAGATCCGGCCGCCAAAGA 62.386 63.158 22.85 12.14 0.00 2.52
974 983 1.823899 GATCCGGCCGCCAAAGATT 60.824 57.895 22.85 1.38 0.00 2.40
975 984 1.786049 GATCCGGCCGCCAAAGATTC 61.786 60.000 22.85 7.24 0.00 2.52
976 985 3.876198 CCGGCCGCCAAAGATTCG 61.876 66.667 22.85 0.00 0.00 3.34
977 986 2.817834 CGGCCGCCAAAGATTCGA 60.818 61.111 14.67 0.00 0.00 3.71
978 987 2.813179 CGGCCGCCAAAGATTCGAG 61.813 63.158 14.67 0.00 0.00 4.04
979 988 2.405191 GCCGCCAAAGATTCGAGC 59.595 61.111 0.00 0.00 0.00 5.03
984 993 1.622232 GCCAAAGATTCGAGCTTTGC 58.378 50.000 25.40 19.70 46.68 3.68
985 994 1.733718 GCCAAAGATTCGAGCTTTGCC 60.734 52.381 25.40 17.27 46.68 4.52
1641 1671 2.672996 ACACATGTGCCTTCCCGC 60.673 61.111 25.68 0.00 0.00 6.13
1727 1757 2.358737 GCTTGGTAGCAGCGGTGT 60.359 61.111 17.07 5.73 46.95 4.16
1728 1758 2.680913 GCTTGGTAGCAGCGGTGTG 61.681 63.158 17.07 0.00 46.95 3.82
1730 1760 2.731691 CTTGGTAGCAGCGGTGTGGT 62.732 60.000 17.07 4.04 0.00 4.16
1776 1806 2.292828 AGGCATTGTTTGGTAGCAGT 57.707 45.000 0.00 0.00 0.00 4.40
1902 1932 2.987547 CTTGGTGGTGCTGCTGGG 60.988 66.667 0.00 0.00 0.00 4.45
1911 1941 3.640407 GCTGCTGGGGTGGTCAGA 61.640 66.667 0.00 0.00 34.36 3.27
1923 1953 1.375268 GGTCAGACAGAGCAGTGCC 60.375 63.158 12.58 3.25 44.14 5.01
1971 2001 2.230130 AGAGAACTAGCTGGCTGTCT 57.770 50.000 5.25 0.00 0.00 3.41
2010 2040 1.086696 CGGATGATGCAAAGACCGTT 58.913 50.000 14.48 0.00 36.38 4.44
2052 2082 2.441001 ACTGCTCCATAAATCCTCCCTG 59.559 50.000 0.00 0.00 0.00 4.45
2058 2088 1.142870 CATAAATCCTCCCTGGCGGAA 59.857 52.381 0.00 0.00 41.40 4.30
2082 2112 2.170607 GAGGTCCATCCCTTCGAAATCA 59.829 50.000 0.00 0.00 34.03 2.57
2197 2227 1.938577 GTCTGCTGATGGTGCATACTG 59.061 52.381 0.00 0.00 39.86 2.74
2264 2295 0.605319 TTGTGATCTTCCGTGCACCC 60.605 55.000 12.15 0.00 0.00 4.61
2267 2298 0.616395 TGATCTTCCGTGCACCCCTA 60.616 55.000 12.15 0.00 0.00 3.53
2489 2521 6.316280 TCCATTCCCCTCTTATTTCGTTTA 57.684 37.500 0.00 0.00 0.00 2.01
2512 2544 4.082787 ACTTGTTGGCATGAATTCTAACCG 60.083 41.667 7.05 2.49 0.00 4.44
2514 2546 3.438781 TGTTGGCATGAATTCTAACCGTC 59.561 43.478 7.05 3.56 0.00 4.79
2620 2652 2.151202 CCCGATTATGAAATGGACCCG 58.849 52.381 0.00 0.00 0.00 5.28
2659 2691 5.604010 GCTTCCTGCATCATACTAATGAC 57.396 43.478 0.00 0.00 44.79 3.06
2723 2796 9.612620 GTTTCTATCATTAAACTGTTGAACCTG 57.387 33.333 0.00 0.00 33.71 4.00
2724 2797 8.918202 TTCTATCATTAAACTGTTGAACCTGT 57.082 30.769 0.00 0.00 0.00 4.00
2731 2804 9.702726 CATTAAACTGTTGAACCTGTTATATCG 57.297 33.333 0.00 0.00 0.00 2.92
2732 2805 6.737254 AAACTGTTGAACCTGTTATATCGG 57.263 37.500 0.00 0.00 0.00 4.18
2740 2813 9.052759 GTTGAACCTGTTATATCGGATGTAAAT 57.947 33.333 8.51 0.00 0.00 1.40
2817 2894 7.381766 TCAAGTTGATAATGTGACATGGAAG 57.618 36.000 0.08 0.00 0.00 3.46
2831 2908 2.391926 TGGAAGTCACTGGTCCACTA 57.608 50.000 0.00 0.00 36.51 2.74
2835 2912 3.444388 GGAAGTCACTGGTCCACTAGTAG 59.556 52.174 0.00 0.00 35.39 2.57
2840 2917 4.705507 GTCACTGGTCCACTAGTAGATTGA 59.294 45.833 3.59 0.00 35.39 2.57
2845 2922 5.030147 TGGTCCACTAGTAGATTGATGGTT 58.970 41.667 3.59 0.00 0.00 3.67
2857 2934 5.619220 AGATTGATGGTTCATAAGAGCCTC 58.381 41.667 2.45 0.00 44.72 4.70
2872 2949 3.071312 AGAGCCTCCATGACTTGATCATC 59.929 47.826 0.00 0.00 45.52 2.92
2877 2964 2.366590 TCCATGACTTGATCATCCTCCG 59.633 50.000 0.00 0.00 45.52 4.63
2889 2976 5.945784 TGATCATCCTCCGTTTTCTGAAATT 59.054 36.000 3.31 0.00 0.00 1.82
2928 3015 9.330063 AGTATACATATGTTGATCAGTTGTTGG 57.670 33.333 14.77 0.00 0.00 3.77
2971 3058 0.944386 AAGGCTACGTGTTTGTGCTG 59.056 50.000 0.00 0.00 0.00 4.41
3072 3159 5.491070 TGAGACTAATTTCCAGGACATGTG 58.509 41.667 1.15 0.00 0.00 3.21
3172 3259 3.181500 GGCCACCATCGAAAATAACAGAC 60.181 47.826 0.00 0.00 0.00 3.51
3178 3265 7.083858 CACCATCGAAAATAACAGACACAATT 58.916 34.615 0.00 0.00 0.00 2.32
3245 3332 2.158623 TCCTGAGATGCACAGTTGGTTT 60.159 45.455 0.00 0.00 34.04 3.27
3266 3353 1.346068 GGCAATGCTAAACCAACCCAA 59.654 47.619 4.82 0.00 0.00 4.12
3565 3673 7.094248 GCATATGCCATATTGTTCATCCTGTTA 60.094 37.037 17.26 0.00 34.31 2.41
3570 3678 6.498304 CCATATTGTTCATCCTGTTACTTGC 58.502 40.000 0.00 0.00 0.00 4.01
3571 3679 4.685169 ATTGTTCATCCTGTTACTTGCG 57.315 40.909 0.00 0.00 0.00 4.85
3585 3693 1.947456 ACTTGCGGAGAGTTTTGGTTC 59.053 47.619 0.00 0.00 0.00 3.62
3586 3694 1.266989 CTTGCGGAGAGTTTTGGTTCC 59.733 52.381 0.00 0.00 0.00 3.62
3588 3696 0.250770 GCGGAGAGTTTTGGTTCCCT 60.251 55.000 0.00 0.00 0.00 4.20
3589 3697 1.818131 GCGGAGAGTTTTGGTTCCCTT 60.818 52.381 0.00 0.00 0.00 3.95
3590 3698 1.880027 CGGAGAGTTTTGGTTCCCTTG 59.120 52.381 0.00 0.00 0.00 3.61
3591 3699 2.748465 CGGAGAGTTTTGGTTCCCTTGT 60.748 50.000 0.00 0.00 0.00 3.16
3599 3707 3.611025 TTGGTTCCCTTGTTGAATCCT 57.389 42.857 0.00 0.00 0.00 3.24
3613 3721 6.511416 TGTTGAATCCTACATGTTTGTTTGG 58.489 36.000 2.30 0.00 37.28 3.28
3642 3778 1.760029 ACCACGGCCAATTTTGAAACT 59.240 42.857 2.24 0.00 0.00 2.66
3649 3785 3.735746 GGCCAATTTTGAAACTCGTCTTG 59.264 43.478 0.00 0.00 0.00 3.02
3652 3788 5.733373 GCCAATTTTGAAACTCGTCTTGTCT 60.733 40.000 0.00 0.00 0.00 3.41
3657 3793 2.693591 TGAAACTCGTCTTGTCTCAGGT 59.306 45.455 0.00 0.00 0.00 4.00
3664 3800 3.069586 TCGTCTTGTCTCAGGTGATGTTT 59.930 43.478 0.00 0.00 0.00 2.83
3676 3812 2.472816 GTGATGTTTTGGCCTTGTGTG 58.527 47.619 3.32 0.00 0.00 3.82
3682 3818 1.733402 TTTGGCCTTGTGTGCTTCGG 61.733 55.000 3.32 0.00 0.00 4.30
3689 3825 0.449786 TTGTGTGCTTCGGTGTTGTG 59.550 50.000 0.00 0.00 0.00 3.33
3700 3836 4.214986 TCGGTGTTGTGGATTGTGATAT 57.785 40.909 0.00 0.00 0.00 1.63
3703 3839 4.437255 CGGTGTTGTGGATTGTGATATGTG 60.437 45.833 0.00 0.00 0.00 3.21
3704 3840 4.414852 GTGTTGTGGATTGTGATATGTGC 58.585 43.478 0.00 0.00 0.00 4.57
3706 3842 5.353956 GTGTTGTGGATTGTGATATGTGCTA 59.646 40.000 0.00 0.00 0.00 3.49
3707 3843 5.353956 TGTTGTGGATTGTGATATGTGCTAC 59.646 40.000 0.00 0.00 0.00 3.58
3708 3844 4.450976 TGTGGATTGTGATATGTGCTACC 58.549 43.478 0.00 0.00 0.00 3.18
3709 3845 4.080638 TGTGGATTGTGATATGTGCTACCA 60.081 41.667 0.00 0.00 0.00 3.25
3722 3858 2.113860 GCTACCAGCAGATGTCCAAA 57.886 50.000 0.00 0.00 41.89 3.28
3724 3860 2.162408 GCTACCAGCAGATGTCCAAAAC 59.838 50.000 0.00 0.00 41.89 2.43
3728 3864 2.886523 CCAGCAGATGTCCAAAACTTGA 59.113 45.455 0.00 0.00 0.00 3.02
3730 3866 3.057736 CAGCAGATGTCCAAAACTTGAGG 60.058 47.826 0.00 0.00 0.00 3.86
3731 3867 2.352127 GCAGATGTCCAAAACTTGAGGC 60.352 50.000 0.00 0.00 0.00 4.70
3733 3869 3.057736 CAGATGTCCAAAACTTGAGGCTG 60.058 47.826 0.00 0.00 0.00 4.85
3734 3870 2.435372 TGTCCAAAACTTGAGGCTGT 57.565 45.000 0.00 0.00 0.00 4.40
3735 3871 2.297701 TGTCCAAAACTTGAGGCTGTC 58.702 47.619 0.00 0.00 0.00 3.51
3736 3872 2.297701 GTCCAAAACTTGAGGCTGTCA 58.702 47.619 0.00 0.00 0.00 3.58
3737 3873 2.687935 GTCCAAAACTTGAGGCTGTCAA 59.312 45.455 0.00 0.00 43.26 3.18
3738 3874 3.319122 GTCCAAAACTTGAGGCTGTCAAT 59.681 43.478 0.00 0.00 44.44 2.57
3741 3877 5.774690 TCCAAAACTTGAGGCTGTCAATTAT 59.225 36.000 0.00 0.00 44.44 1.28
3742 3878 6.267471 TCCAAAACTTGAGGCTGTCAATTATT 59.733 34.615 0.00 0.00 44.44 1.40
3743 3879 6.930722 CCAAAACTTGAGGCTGTCAATTATTT 59.069 34.615 0.00 3.01 44.44 1.40
3744 3880 7.116805 CCAAAACTTGAGGCTGTCAATTATTTC 59.883 37.037 0.00 0.00 44.44 2.17
3745 3881 7.530426 AAACTTGAGGCTGTCAATTATTTCT 57.470 32.000 0.00 0.00 44.44 2.52
3747 3883 7.530426 ACTTGAGGCTGTCAATTATTTCTTT 57.470 32.000 0.00 0.00 44.44 2.52
3748 3884 7.597386 ACTTGAGGCTGTCAATTATTTCTTTC 58.403 34.615 0.00 0.00 44.44 2.62
3749 3885 7.231317 ACTTGAGGCTGTCAATTATTTCTTTCA 59.769 33.333 0.00 0.00 44.44 2.69
3751 3887 7.950512 TGAGGCTGTCAATTATTTCTTTCAAA 58.049 30.769 0.00 0.00 29.64 2.69
3752 3888 8.587608 TGAGGCTGTCAATTATTTCTTTCAAAT 58.412 29.630 0.00 0.00 29.64 2.32
3753 3889 8.767478 AGGCTGTCAATTATTTCTTTCAAATG 57.233 30.769 0.00 0.00 0.00 2.32
3754 3890 7.820872 AGGCTGTCAATTATTTCTTTCAAATGG 59.179 33.333 0.00 0.00 0.00 3.16
3755 3891 7.603784 GGCTGTCAATTATTTCTTTCAAATGGT 59.396 33.333 0.00 0.00 0.00 3.55
3766 3902 9.631257 ATTTCTTTCAAATGGTTTGGATTCTTT 57.369 25.926 2.92 0.00 40.98 2.52
3771 3907 7.903995 TCAAATGGTTTGGATTCTTTATTGC 57.096 32.000 2.92 0.00 40.98 3.56
3772 3908 7.448420 TCAAATGGTTTGGATTCTTTATTGCA 58.552 30.769 2.92 0.00 40.98 4.08
3773 3909 7.603404 TCAAATGGTTTGGATTCTTTATTGCAG 59.397 33.333 2.92 0.00 40.98 4.41
3774 3910 5.404466 TGGTTTGGATTCTTTATTGCAGG 57.596 39.130 0.00 0.00 0.00 4.85
3775 3911 4.183865 GGTTTGGATTCTTTATTGCAGGC 58.816 43.478 0.00 0.00 0.00 4.85
3776 3912 4.322650 GGTTTGGATTCTTTATTGCAGGCA 60.323 41.667 0.00 0.00 0.00 4.75
3777 3913 5.422145 GTTTGGATTCTTTATTGCAGGCAT 58.578 37.500 0.00 0.00 0.00 4.40
3778 3914 4.924305 TGGATTCTTTATTGCAGGCATC 57.076 40.909 0.00 0.00 0.00 3.91
3779 3915 3.316029 TGGATTCTTTATTGCAGGCATCG 59.684 43.478 0.00 0.00 0.00 3.84
3780 3916 3.316308 GGATTCTTTATTGCAGGCATCGT 59.684 43.478 0.00 0.00 0.00 3.73
3781 3917 3.763097 TTCTTTATTGCAGGCATCGTG 57.237 42.857 0.00 0.00 0.00 4.35
3837 3983 5.607477 TGTTTGTTTAGCAGTACACTAGCT 58.393 37.500 0.00 1.46 42.14 3.32
3878 4052 6.816134 ATATGTGCTTGTGTGTTGTTGATA 57.184 33.333 0.00 0.00 0.00 2.15
3882 4056 4.681025 GTGCTTGTGTGTTGTTGATATTGG 59.319 41.667 0.00 0.00 0.00 3.16
3907 4081 9.877178 GGTCTTGTATTCAAAGAATCTTCTCTA 57.123 33.333 0.00 0.00 36.28 2.43
4059 4234 4.694339 ACGAAGGATTATTGTAGCTGTCC 58.306 43.478 0.00 0.00 0.00 4.02
4066 4241 6.543831 AGGATTATTGTAGCTGTCCATTGTTC 59.456 38.462 0.00 0.00 0.00 3.18
4087 4262 7.829725 TGTTCCAAAGAAATATGAACATCTGG 58.170 34.615 0.00 0.00 40.06 3.86
4122 4297 5.854010 TGCTAAAAGATCTATGAGGTCGT 57.146 39.130 0.00 0.00 0.00 4.34
4138 4313 1.069906 GTCGTGCGCTTCTGTCAAAAT 60.070 47.619 9.73 0.00 0.00 1.82
4146 4321 4.558860 GCGCTTCTGTCAAAATATTGAACC 59.441 41.667 0.00 0.00 46.66 3.62
4150 4325 6.647334 TTCTGTCAAAATATTGAACCAGCA 57.353 33.333 0.00 0.00 46.66 4.41
4154 4329 6.446318 TGTCAAAATATTGAACCAGCAAGAC 58.554 36.000 0.00 0.00 46.66 3.01
4166 4341 5.796424 ACCAGCAAGACATCAAAAGAAAT 57.204 34.783 0.00 0.00 0.00 2.17
4168 4343 7.472334 ACCAGCAAGACATCAAAAGAAATAT 57.528 32.000 0.00 0.00 0.00 1.28
4172 4347 9.073368 CAGCAAGACATCAAAAGAAATATTCAG 57.927 33.333 0.00 0.00 0.00 3.02
4173 4348 7.758528 AGCAAGACATCAAAAGAAATATTCAGC 59.241 33.333 0.00 0.00 0.00 4.26
4174 4349 7.253552 GCAAGACATCAAAAGAAATATTCAGCG 60.254 37.037 0.00 0.00 0.00 5.18
4190 4366 1.887242 GCGTGCATCCATTAGCCGA 60.887 57.895 0.00 0.00 0.00 5.54
4201 4377 2.348666 CCATTAGCCGACGTTTCTTCTG 59.651 50.000 0.00 0.00 0.00 3.02
4216 4392 0.616111 TTCTGAGACAGCCCTCCCTC 60.616 60.000 0.00 0.00 32.32 4.30
4217 4393 1.001503 CTGAGACAGCCCTCCCTCT 59.998 63.158 0.00 0.00 32.32 3.69
4218 4394 1.000993 TGAGACAGCCCTCCCTCTC 59.999 63.158 0.00 0.00 32.32 3.20
4219 4395 1.000993 GAGACAGCCCTCCCTCTCA 59.999 63.158 0.00 0.00 31.20 3.27
4220 4396 0.616111 GAGACAGCCCTCCCTCTCAA 60.616 60.000 0.00 0.00 31.20 3.02
4221 4397 0.043940 AGACAGCCCTCCCTCTCAAT 59.956 55.000 0.00 0.00 0.00 2.57
4222 4398 0.915364 GACAGCCCTCCCTCTCAATT 59.085 55.000 0.00 0.00 0.00 2.32
4223 4399 1.283321 GACAGCCCTCCCTCTCAATTT 59.717 52.381 0.00 0.00 0.00 1.82
4224 4400 1.713078 ACAGCCCTCCCTCTCAATTTT 59.287 47.619 0.00 0.00 0.00 1.82
4225 4401 2.110721 ACAGCCCTCCCTCTCAATTTTT 59.889 45.455 0.00 0.00 0.00 1.94
4226 4402 2.757314 CAGCCCTCCCTCTCAATTTTTC 59.243 50.000 0.00 0.00 0.00 2.29
4227 4403 2.651841 AGCCCTCCCTCTCAATTTTTCT 59.348 45.455 0.00 0.00 0.00 2.52
4228 4404 3.020274 GCCCTCCCTCTCAATTTTTCTC 58.980 50.000 0.00 0.00 0.00 2.87
4229 4405 3.308760 GCCCTCCCTCTCAATTTTTCTCT 60.309 47.826 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.557056 TGTCTTCGACGGATCTGTCTTT 59.443 45.455 27.81 0.00 36.71 2.52
2 3 1.469308 GTGTCTTCGACGGATCTGTCT 59.531 52.381 27.81 0.00 36.71 3.41
3 4 1.199327 TGTGTCTTCGACGGATCTGTC 59.801 52.381 22.64 22.64 34.95 3.51
4 5 1.068472 GTGTGTCTTCGACGGATCTGT 60.068 52.381 6.97 6.97 34.95 3.41
5 6 1.618861 GTGTGTCTTCGACGGATCTG 58.381 55.000 0.00 0.00 34.95 2.90
6 7 0.526662 GGTGTGTCTTCGACGGATCT 59.473 55.000 0.00 0.00 34.95 2.75
7 8 0.526662 AGGTGTGTCTTCGACGGATC 59.473 55.000 0.00 0.00 34.95 3.36
8 9 0.526662 GAGGTGTGTCTTCGACGGAT 59.473 55.000 0.00 0.00 34.95 4.18
10 11 1.080705 GGAGGTGTGTCTTCGACGG 60.081 63.158 0.00 0.00 34.95 4.79
11 12 0.663568 GTGGAGGTGTGTCTTCGACG 60.664 60.000 0.00 0.00 34.95 5.12
12 13 0.387929 TGTGGAGGTGTGTCTTCGAC 59.612 55.000 0.00 0.00 33.05 4.20
13 14 0.387929 GTGTGGAGGTGTGTCTTCGA 59.612 55.000 0.00 0.00 0.00 3.71
14 15 0.939577 CGTGTGGAGGTGTGTCTTCG 60.940 60.000 0.00 0.00 0.00 3.79
15 16 1.222115 GCGTGTGGAGGTGTGTCTTC 61.222 60.000 0.00 0.00 0.00 2.87
16 17 1.227556 GCGTGTGGAGGTGTGTCTT 60.228 57.895 0.00 0.00 0.00 3.01
17 18 2.421739 GCGTGTGGAGGTGTGTCT 59.578 61.111 0.00 0.00 0.00 3.41
18 19 2.665185 GGCGTGTGGAGGTGTGTC 60.665 66.667 0.00 0.00 0.00 3.67
19 20 4.250305 GGGCGTGTGGAGGTGTGT 62.250 66.667 0.00 0.00 0.00 3.72
20 21 4.248842 TGGGCGTGTGGAGGTGTG 62.249 66.667 0.00 0.00 0.00 3.82
21 22 4.250305 GTGGGCGTGTGGAGGTGT 62.250 66.667 0.00 0.00 0.00 4.16
25 26 4.082523 ATCGGTGGGCGTGTGGAG 62.083 66.667 0.00 0.00 0.00 3.86
26 27 4.386951 CATCGGTGGGCGTGTGGA 62.387 66.667 0.00 0.00 0.00 4.02
27 28 2.304901 TATCATCGGTGGGCGTGTGG 62.305 60.000 0.00 0.00 0.00 4.17
28 29 1.142965 TATCATCGGTGGGCGTGTG 59.857 57.895 0.00 0.00 0.00 3.82
29 30 1.143183 GTATCATCGGTGGGCGTGT 59.857 57.895 0.00 0.00 0.00 4.49
30 31 0.671796 TAGTATCATCGGTGGGCGTG 59.328 55.000 0.00 0.00 0.00 5.34
31 32 0.672342 GTAGTATCATCGGTGGGCGT 59.328 55.000 0.00 0.00 0.00 5.68
32 33 0.671796 TGTAGTATCATCGGTGGGCG 59.328 55.000 0.00 0.00 0.00 6.13
33 34 1.602165 CGTGTAGTATCATCGGTGGGC 60.602 57.143 0.00 0.00 0.00 5.36
34 35 1.602165 GCGTGTAGTATCATCGGTGGG 60.602 57.143 0.00 0.00 0.00 4.61
35 36 1.066454 TGCGTGTAGTATCATCGGTGG 59.934 52.381 0.00 0.00 0.00 4.61
36 37 2.485266 TGCGTGTAGTATCATCGGTG 57.515 50.000 0.00 0.00 0.00 4.94
37 38 2.621526 TGATGCGTGTAGTATCATCGGT 59.378 45.455 0.00 0.00 45.02 4.69
38 39 3.282831 TGATGCGTGTAGTATCATCGG 57.717 47.619 0.00 0.00 45.02 4.18
43 44 1.335810 TCCGGTGATGCGTGTAGTATC 59.664 52.381 0.00 0.00 41.55 2.24
44 45 1.395635 TCCGGTGATGCGTGTAGTAT 58.604 50.000 0.00 0.00 0.00 2.12
45 46 1.135315 GTTCCGGTGATGCGTGTAGTA 60.135 52.381 0.00 0.00 0.00 1.82
46 47 0.389426 GTTCCGGTGATGCGTGTAGT 60.389 55.000 0.00 0.00 0.00 2.73
47 48 1.410737 CGTTCCGGTGATGCGTGTAG 61.411 60.000 0.00 0.00 0.00 2.74
48 49 1.444724 CGTTCCGGTGATGCGTGTA 60.445 57.895 0.00 0.00 0.00 2.90
49 50 2.736995 CGTTCCGGTGATGCGTGT 60.737 61.111 0.00 0.00 0.00 4.49
50 51 3.487202 CCGTTCCGGTGATGCGTG 61.487 66.667 0.00 0.00 42.73 5.34
51 52 4.752879 CCCGTTCCGGTGATGCGT 62.753 66.667 0.00 0.00 46.80 5.24
53 54 4.090588 TCCCCGTTCCGGTGATGC 62.091 66.667 0.00 0.00 46.80 3.91
54 55 1.324740 TAGTCCCCGTTCCGGTGATG 61.325 60.000 0.00 0.00 46.80 3.07
55 56 1.000739 TAGTCCCCGTTCCGGTGAT 59.999 57.895 0.00 0.00 46.80 3.06
56 57 1.679977 CTAGTCCCCGTTCCGGTGA 60.680 63.158 0.00 0.00 46.80 4.02
57 58 1.679977 TCTAGTCCCCGTTCCGGTG 60.680 63.158 0.00 0.00 46.80 4.94
58 59 1.680314 GTCTAGTCCCCGTTCCGGT 60.680 63.158 0.00 0.00 46.80 5.28
60 61 2.768492 CCGTCTAGTCCCCGTTCCG 61.768 68.421 0.00 0.00 0.00 4.30
61 62 1.379044 TCCGTCTAGTCCCCGTTCC 60.379 63.158 0.00 0.00 0.00 3.62
62 63 0.393537 TCTCCGTCTAGTCCCCGTTC 60.394 60.000 0.00 0.00 0.00 3.95
63 64 0.394080 CTCTCCGTCTAGTCCCCGTT 60.394 60.000 0.00 0.00 0.00 4.44
64 65 1.224039 CTCTCCGTCTAGTCCCCGT 59.776 63.158 0.00 0.00 0.00 5.28
65 66 0.814812 GTCTCTCCGTCTAGTCCCCG 60.815 65.000 0.00 0.00 0.00 5.73
66 67 0.466007 GGTCTCTCCGTCTAGTCCCC 60.466 65.000 0.00 0.00 0.00 4.81
67 68 0.547553 AGGTCTCTCCGTCTAGTCCC 59.452 60.000 0.00 0.00 41.99 4.46
68 69 2.423446 AAGGTCTCTCCGTCTAGTCC 57.577 55.000 0.00 0.00 41.99 3.85
69 70 6.453926 AAATAAAGGTCTCTCCGTCTAGTC 57.546 41.667 0.00 0.00 41.99 2.59
70 71 6.127394 GGAAAATAAAGGTCTCTCCGTCTAGT 60.127 42.308 0.00 0.00 41.99 2.57
71 72 6.127423 TGGAAAATAAAGGTCTCTCCGTCTAG 60.127 42.308 0.00 0.00 41.99 2.43
72 73 5.718130 TGGAAAATAAAGGTCTCTCCGTCTA 59.282 40.000 0.00 0.00 41.99 2.59
73 74 4.530946 TGGAAAATAAAGGTCTCTCCGTCT 59.469 41.667 0.00 0.00 41.99 4.18
74 75 4.828829 TGGAAAATAAAGGTCTCTCCGTC 58.171 43.478 0.00 0.00 41.99 4.79
75 76 4.903045 TGGAAAATAAAGGTCTCTCCGT 57.097 40.909 0.00 0.00 41.99 4.69
76 77 5.675538 AGATGGAAAATAAAGGTCTCTCCG 58.324 41.667 0.00 0.00 41.99 4.63
77 78 7.112779 TGAAGATGGAAAATAAAGGTCTCTCC 58.887 38.462 0.00 0.00 0.00 3.71
78 79 8.043710 TCTGAAGATGGAAAATAAAGGTCTCTC 58.956 37.037 0.00 0.00 0.00 3.20
79 80 7.922382 TCTGAAGATGGAAAATAAAGGTCTCT 58.078 34.615 0.00 0.00 0.00 3.10
80 81 8.043710 TCTCTGAAGATGGAAAATAAAGGTCTC 58.956 37.037 0.00 0.00 0.00 3.36
81 82 7.922382 TCTCTGAAGATGGAAAATAAAGGTCT 58.078 34.615 0.00 0.00 0.00 3.85
82 83 7.826744 ACTCTCTGAAGATGGAAAATAAAGGTC 59.173 37.037 0.00 0.00 0.00 3.85
83 84 7.694093 ACTCTCTGAAGATGGAAAATAAAGGT 58.306 34.615 0.00 0.00 0.00 3.50
84 85 8.046107 AGACTCTCTGAAGATGGAAAATAAAGG 58.954 37.037 0.00 0.00 0.00 3.11
85 86 9.097257 GAGACTCTCTGAAGATGGAAAATAAAG 57.903 37.037 0.00 0.00 0.00 1.85
86 87 8.043710 GGAGACTCTCTGAAGATGGAAAATAAA 58.956 37.037 6.02 0.00 0.00 1.40
87 88 7.560368 GGAGACTCTCTGAAGATGGAAAATAA 58.440 38.462 6.02 0.00 0.00 1.40
88 89 6.183360 CGGAGACTCTCTGAAGATGGAAAATA 60.183 42.308 9.05 0.00 39.05 1.40
89 90 5.395103 CGGAGACTCTCTGAAGATGGAAAAT 60.395 44.000 9.05 0.00 39.05 1.82
90 91 4.081972 CGGAGACTCTCTGAAGATGGAAAA 60.082 45.833 9.05 0.00 39.05 2.29
91 92 3.445450 CGGAGACTCTCTGAAGATGGAAA 59.555 47.826 9.05 0.00 39.05 3.13
92 93 3.020274 CGGAGACTCTCTGAAGATGGAA 58.980 50.000 9.05 0.00 39.05 3.53
93 94 2.649190 CGGAGACTCTCTGAAGATGGA 58.351 52.381 9.05 0.00 39.05 3.41
94 95 1.066908 GCGGAGACTCTCTGAAGATGG 59.933 57.143 17.80 0.00 39.05 3.51
95 96 1.066908 GGCGGAGACTCTCTGAAGATG 59.933 57.143 17.80 0.00 39.05 2.90
96 97 1.398692 GGCGGAGACTCTCTGAAGAT 58.601 55.000 17.80 0.00 39.05 2.40
97 98 1.027255 CGGCGGAGACTCTCTGAAGA 61.027 60.000 17.80 0.00 39.05 2.87
98 99 1.309499 ACGGCGGAGACTCTCTGAAG 61.309 60.000 17.80 12.23 39.05 3.02
99 100 0.894184 AACGGCGGAGACTCTCTGAA 60.894 55.000 17.80 0.00 39.05 3.02
100 101 0.894184 AAACGGCGGAGACTCTCTGA 60.894 55.000 17.80 0.00 39.05 3.27
101 102 0.456995 GAAACGGCGGAGACTCTCTG 60.457 60.000 13.24 10.23 39.66 3.35
102 103 1.884444 GAAACGGCGGAGACTCTCT 59.116 57.895 13.24 0.00 0.00 3.10
103 104 1.514443 CGAAACGGCGGAGACTCTC 60.514 63.158 13.24 0.00 0.00 3.20
104 105 2.567049 CGAAACGGCGGAGACTCT 59.433 61.111 13.24 0.00 0.00 3.24
105 106 3.179939 GCGAAACGGCGGAGACTC 61.180 66.667 13.24 0.00 0.00 3.36
106 107 4.736896 GGCGAAACGGCGGAGACT 62.737 66.667 13.24 0.00 43.33 3.24
114 115 2.391389 GCTCAGGAAGGCGAAACGG 61.391 63.158 0.00 0.00 0.00 4.44
115 116 1.630244 CTGCTCAGGAAGGCGAAACG 61.630 60.000 0.00 0.00 0.00 3.60
116 117 2.166270 CTGCTCAGGAAGGCGAAAC 58.834 57.895 0.00 0.00 0.00 2.78
117 118 4.701663 CTGCTCAGGAAGGCGAAA 57.298 55.556 0.00 0.00 0.00 3.46
127 128 0.109342 AGGGTTTGTGTCCTGCTCAG 59.891 55.000 0.00 0.00 31.11 3.35
128 129 1.429930 TAGGGTTTGTGTCCTGCTCA 58.570 50.000 0.00 0.00 34.75 4.26
129 130 2.152016 GTTAGGGTTTGTGTCCTGCTC 58.848 52.381 0.00 0.00 34.75 4.26
130 131 1.493022 TGTTAGGGTTTGTGTCCTGCT 59.507 47.619 0.00 0.00 34.75 4.24
131 132 1.975660 TGTTAGGGTTTGTGTCCTGC 58.024 50.000 0.00 0.00 34.75 4.85
132 133 3.243401 GCTTTGTTAGGGTTTGTGTCCTG 60.243 47.826 0.00 0.00 34.75 3.86
133 134 2.956333 GCTTTGTTAGGGTTTGTGTCCT 59.044 45.455 0.00 0.00 37.18 3.85
134 135 2.035449 GGCTTTGTTAGGGTTTGTGTCC 59.965 50.000 0.00 0.00 0.00 4.02
135 136 2.035449 GGGCTTTGTTAGGGTTTGTGTC 59.965 50.000 0.00 0.00 0.00 3.67
136 137 2.036387 GGGCTTTGTTAGGGTTTGTGT 58.964 47.619 0.00 0.00 0.00 3.72
137 138 1.000717 CGGGCTTTGTTAGGGTTTGTG 60.001 52.381 0.00 0.00 0.00 3.33
138 139 1.133730 TCGGGCTTTGTTAGGGTTTGT 60.134 47.619 0.00 0.00 0.00 2.83
139 140 1.611519 TCGGGCTTTGTTAGGGTTTG 58.388 50.000 0.00 0.00 0.00 2.93
140 141 2.368311 TTCGGGCTTTGTTAGGGTTT 57.632 45.000 0.00 0.00 0.00 3.27
141 142 2.368311 TTTCGGGCTTTGTTAGGGTT 57.632 45.000 0.00 0.00 0.00 4.11
142 143 2.368311 TTTTCGGGCTTTGTTAGGGT 57.632 45.000 0.00 0.00 0.00 4.34
159 160 6.607600 GGGAGGGCTCTGTTTTATATCTTTTT 59.392 38.462 0.00 0.00 0.00 1.94
160 161 6.129874 GGGAGGGCTCTGTTTTATATCTTTT 58.870 40.000 0.00 0.00 0.00 2.27
161 162 5.193728 TGGGAGGGCTCTGTTTTATATCTTT 59.806 40.000 0.00 0.00 0.00 2.52
162 163 4.726825 TGGGAGGGCTCTGTTTTATATCTT 59.273 41.667 0.00 0.00 0.00 2.40
163 164 4.103311 GTGGGAGGGCTCTGTTTTATATCT 59.897 45.833 0.00 0.00 0.00 1.98
164 165 4.390264 GTGGGAGGGCTCTGTTTTATATC 58.610 47.826 0.00 0.00 0.00 1.63
165 166 3.181454 CGTGGGAGGGCTCTGTTTTATAT 60.181 47.826 0.00 0.00 0.00 0.86
166 167 2.169769 CGTGGGAGGGCTCTGTTTTATA 59.830 50.000 0.00 0.00 0.00 0.98
167 168 1.065418 CGTGGGAGGGCTCTGTTTTAT 60.065 52.381 0.00 0.00 0.00 1.40
168 169 0.323629 CGTGGGAGGGCTCTGTTTTA 59.676 55.000 0.00 0.00 0.00 1.52
169 170 1.073199 CGTGGGAGGGCTCTGTTTT 59.927 57.895 0.00 0.00 0.00 2.43
170 171 2.750350 CGTGGGAGGGCTCTGTTT 59.250 61.111 0.00 0.00 0.00 2.83
171 172 3.322466 CCGTGGGAGGGCTCTGTT 61.322 66.667 0.00 0.00 0.00 3.16
189 190 1.565305 CAGTAGATCTCGGCACTTGC 58.435 55.000 0.00 0.00 41.14 4.01
190 191 1.565305 GCAGTAGATCTCGGCACTTG 58.435 55.000 0.00 0.00 0.00 3.16
191 192 0.101399 CGCAGTAGATCTCGGCACTT 59.899 55.000 0.00 0.00 0.00 3.16
192 193 1.730487 CGCAGTAGATCTCGGCACT 59.270 57.895 0.00 0.00 0.00 4.40
193 194 1.946650 GCGCAGTAGATCTCGGCAC 60.947 63.158 0.30 0.00 0.00 5.01
194 195 2.413351 GCGCAGTAGATCTCGGCA 59.587 61.111 0.30 0.00 0.00 5.69
195 196 2.355244 GGCGCAGTAGATCTCGGC 60.355 66.667 10.83 11.44 36.14 5.54
196 197 1.284408 GAGGCGCAGTAGATCTCGG 59.716 63.158 10.83 0.00 0.00 4.63
197 198 1.284408 GGAGGCGCAGTAGATCTCG 59.716 63.158 10.83 0.00 0.00 4.04
198 199 0.965439 ATGGAGGCGCAGTAGATCTC 59.035 55.000 10.83 4.17 0.00 2.75
199 200 0.678395 CATGGAGGCGCAGTAGATCT 59.322 55.000 10.83 0.00 0.00 2.75
200 201 0.320247 CCATGGAGGCGCAGTAGATC 60.320 60.000 10.83 0.00 0.00 2.75
201 202 1.750930 CCATGGAGGCGCAGTAGAT 59.249 57.895 10.83 0.00 0.00 1.98
202 203 3.220222 CCATGGAGGCGCAGTAGA 58.780 61.111 10.83 0.00 0.00 2.59
220 221 1.972660 CTTCTCCGGTGGCCTTAGGG 61.973 65.000 3.32 0.00 0.00 3.53
221 222 1.522569 CTTCTCCGGTGGCCTTAGG 59.477 63.158 3.32 4.25 0.00 2.69
222 223 1.522569 CCTTCTCCGGTGGCCTTAG 59.477 63.158 3.32 0.00 0.00 2.18
223 224 1.993391 CCCTTCTCCGGTGGCCTTA 60.993 63.158 3.32 0.00 0.00 2.69
224 225 3.330720 CCCTTCTCCGGTGGCCTT 61.331 66.667 3.32 0.00 0.00 4.35
225 226 3.642741 ATCCCTTCTCCGGTGGCCT 62.643 63.158 3.32 0.00 0.00 5.19
226 227 3.090532 ATCCCTTCTCCGGTGGCC 61.091 66.667 0.00 0.00 0.00 5.36
227 228 2.190578 CATCCCTTCTCCGGTGGC 59.809 66.667 0.00 0.00 0.00 5.01
228 229 1.689233 TCCATCCCTTCTCCGGTGG 60.689 63.158 0.00 0.00 0.00 4.61
229 230 0.978146 AGTCCATCCCTTCTCCGGTG 60.978 60.000 0.00 0.00 0.00 4.94
230 231 0.635009 TAGTCCATCCCTTCTCCGGT 59.365 55.000 0.00 0.00 0.00 5.28
231 232 1.333177 CTAGTCCATCCCTTCTCCGG 58.667 60.000 0.00 0.00 0.00 5.14
232 233 0.676736 GCTAGTCCATCCCTTCTCCG 59.323 60.000 0.00 0.00 0.00 4.63
233 234 0.676736 CGCTAGTCCATCCCTTCTCC 59.323 60.000 0.00 0.00 0.00 3.71
234 235 0.032815 GCGCTAGTCCATCCCTTCTC 59.967 60.000 0.00 0.00 0.00 2.87
235 236 1.403687 GGCGCTAGTCCATCCCTTCT 61.404 60.000 7.64 0.00 0.00 2.85
236 237 1.069935 GGCGCTAGTCCATCCCTTC 59.930 63.158 7.64 0.00 0.00 3.46
237 238 2.797278 CGGCGCTAGTCCATCCCTT 61.797 63.158 7.64 0.00 0.00 3.95
238 239 3.227276 CGGCGCTAGTCCATCCCT 61.227 66.667 7.64 0.00 0.00 4.20
239 240 4.301027 CCGGCGCTAGTCCATCCC 62.301 72.222 7.64 0.00 0.00 3.85
240 241 4.971125 GCCGGCGCTAGTCCATCC 62.971 72.222 12.58 0.00 0.00 3.51
259 260 1.971695 GTTCTTTGCCTCCCACCGG 60.972 63.158 0.00 0.00 0.00 5.28
260 261 1.971695 GGTTCTTTGCCTCCCACCG 60.972 63.158 0.00 0.00 0.00 4.94
261 262 1.606601 GGGTTCTTTGCCTCCCACC 60.607 63.158 0.00 0.00 39.68 4.61
262 263 0.696501 TAGGGTTCTTTGCCTCCCAC 59.303 55.000 0.00 0.00 42.12 4.61
263 264 0.991920 CTAGGGTTCTTTGCCTCCCA 59.008 55.000 0.00 0.00 42.12 4.37
264 265 0.992695 ACTAGGGTTCTTTGCCTCCC 59.007 55.000 0.00 0.00 40.16 4.30
265 266 2.820197 CAAACTAGGGTTCTTTGCCTCC 59.180 50.000 0.00 0.00 34.14 4.30
266 267 2.229062 GCAAACTAGGGTTCTTTGCCTC 59.771 50.000 13.91 0.00 33.23 4.70
267 268 2.239400 GCAAACTAGGGTTCTTTGCCT 58.761 47.619 13.91 0.00 33.23 4.75
268 269 1.068541 CGCAAACTAGGGTTCTTTGCC 60.069 52.381 17.32 5.28 34.85 4.52
269 270 1.068541 CCGCAAACTAGGGTTCTTTGC 60.069 52.381 14.57 14.57 34.93 3.68
270 271 2.484264 CTCCGCAAACTAGGGTTCTTTG 59.516 50.000 0.00 0.00 34.14 2.77
271 272 2.370849 TCTCCGCAAACTAGGGTTCTTT 59.629 45.455 0.00 0.00 34.14 2.52
272 273 1.975680 TCTCCGCAAACTAGGGTTCTT 59.024 47.619 0.00 0.00 34.14 2.52
273 274 1.275573 GTCTCCGCAAACTAGGGTTCT 59.724 52.381 0.00 0.00 34.14 3.01
274 275 1.723220 GTCTCCGCAAACTAGGGTTC 58.277 55.000 0.00 0.00 34.14 3.62
275 276 0.037605 CGTCTCCGCAAACTAGGGTT 60.038 55.000 0.00 0.00 37.24 4.11
276 277 1.590147 CGTCTCCGCAAACTAGGGT 59.410 57.895 0.00 0.00 0.00 4.34
277 278 1.153628 CCGTCTCCGCAAACTAGGG 60.154 63.158 0.00 0.00 0.00 3.53
278 279 0.736325 CACCGTCTCCGCAAACTAGG 60.736 60.000 0.00 0.00 0.00 3.02
279 280 0.736325 CCACCGTCTCCGCAAACTAG 60.736 60.000 0.00 0.00 0.00 2.57
280 281 1.290955 CCACCGTCTCCGCAAACTA 59.709 57.895 0.00 0.00 0.00 2.24
281 282 2.030562 CCACCGTCTCCGCAAACT 59.969 61.111 0.00 0.00 0.00 2.66
282 283 3.723348 GCCACCGTCTCCGCAAAC 61.723 66.667 0.00 0.00 0.00 2.93
283 284 3.936203 AGCCACCGTCTCCGCAAA 61.936 61.111 0.00 0.00 0.00 3.68
284 285 4.680237 CAGCCACCGTCTCCGCAA 62.680 66.667 0.00 0.00 0.00 4.85
288 289 3.075005 TAGCCAGCCACCGTCTCC 61.075 66.667 0.00 0.00 0.00 3.71
289 290 2.184579 GTAGCCAGCCACCGTCTC 59.815 66.667 0.00 0.00 0.00 3.36
290 291 3.760035 CGTAGCCAGCCACCGTCT 61.760 66.667 0.00 0.00 0.00 4.18
291 292 3.584868 AACGTAGCCAGCCACCGTC 62.585 63.158 0.00 0.00 0.00 4.79
292 293 3.622826 AACGTAGCCAGCCACCGT 61.623 61.111 0.00 0.00 0.00 4.83
293 294 3.118454 CAACGTAGCCAGCCACCG 61.118 66.667 0.00 0.00 0.00 4.94
294 295 1.741770 CTCAACGTAGCCAGCCACC 60.742 63.158 0.00 0.00 0.00 4.61
295 296 0.737715 CTCTCAACGTAGCCAGCCAC 60.738 60.000 0.00 0.00 0.00 5.01
296 297 1.185618 ACTCTCAACGTAGCCAGCCA 61.186 55.000 0.00 0.00 0.00 4.75
297 298 0.037232 AACTCTCAACGTAGCCAGCC 60.037 55.000 0.00 0.00 0.00 4.85
298 299 1.797025 AAACTCTCAACGTAGCCAGC 58.203 50.000 0.00 0.00 0.00 4.85
299 300 2.408704 CGAAAACTCTCAACGTAGCCAG 59.591 50.000 0.00 0.00 0.00 4.85
300 301 2.034939 TCGAAAACTCTCAACGTAGCCA 59.965 45.455 0.00 0.00 0.00 4.75
301 302 2.669364 TCGAAAACTCTCAACGTAGCC 58.331 47.619 0.00 0.00 0.00 3.93
302 303 4.905412 AATCGAAAACTCTCAACGTAGC 57.095 40.909 0.00 0.00 0.00 3.58
303 304 8.861101 AGAATAAATCGAAAACTCTCAACGTAG 58.139 33.333 0.00 0.00 0.00 3.51
304 305 8.752766 AGAATAAATCGAAAACTCTCAACGTA 57.247 30.769 0.00 0.00 0.00 3.57
305 306 7.653767 AGAATAAATCGAAAACTCTCAACGT 57.346 32.000 0.00 0.00 0.00 3.99
306 307 7.688578 GGAAGAATAAATCGAAAACTCTCAACG 59.311 37.037 0.00 0.00 0.00 4.10
307 308 8.722394 AGGAAGAATAAATCGAAAACTCTCAAC 58.278 33.333 0.00 0.00 0.00 3.18
308 309 8.721478 CAGGAAGAATAAATCGAAAACTCTCAA 58.279 33.333 0.00 0.00 0.00 3.02
309 310 7.878127 ACAGGAAGAATAAATCGAAAACTCTCA 59.122 33.333 0.00 0.00 0.00 3.27
310 311 8.171840 CACAGGAAGAATAAATCGAAAACTCTC 58.828 37.037 0.00 0.00 0.00 3.20
311 312 7.361286 GCACAGGAAGAATAAATCGAAAACTCT 60.361 37.037 0.00 0.00 0.00 3.24
312 313 6.743172 GCACAGGAAGAATAAATCGAAAACTC 59.257 38.462 0.00 0.00 0.00 3.01
313 314 6.206634 TGCACAGGAAGAATAAATCGAAAACT 59.793 34.615 0.00 0.00 0.00 2.66
314 315 6.378582 TGCACAGGAAGAATAAATCGAAAAC 58.621 36.000 0.00 0.00 0.00 2.43
315 316 6.567687 TGCACAGGAAGAATAAATCGAAAA 57.432 33.333 0.00 0.00 0.00 2.29
316 317 6.757897 ATGCACAGGAAGAATAAATCGAAA 57.242 33.333 0.00 0.00 0.00 3.46
317 318 6.456853 CGAATGCACAGGAAGAATAAATCGAA 60.457 38.462 0.00 0.00 0.00 3.71
318 319 5.006649 CGAATGCACAGGAAGAATAAATCGA 59.993 40.000 0.00 0.00 0.00 3.59
319 320 5.200454 CGAATGCACAGGAAGAATAAATCG 58.800 41.667 0.00 0.00 0.00 3.34
320 321 5.967674 CACGAATGCACAGGAAGAATAAATC 59.032 40.000 0.00 0.00 0.00 2.17
321 322 5.883661 CACGAATGCACAGGAAGAATAAAT 58.116 37.500 0.00 0.00 0.00 1.40
322 323 5.295431 CACGAATGCACAGGAAGAATAAA 57.705 39.130 0.00 0.00 0.00 1.40
323 324 4.944962 CACGAATGCACAGGAAGAATAA 57.055 40.909 0.00 0.00 0.00 1.40
355 356 8.324567 GCTGAACAAACGAAAAACAATAAATCA 58.675 29.630 0.00 0.00 0.00 2.57
373 374 2.401583 ACAGTCACTGTGCTGAACAA 57.598 45.000 27.15 0.05 43.63 2.83
401 402 5.388599 TTCCCTTTTTCTCCTCAGAAAGT 57.611 39.130 0.00 0.00 46.99 2.66
410 411 8.354711 ACTCTTATGATTTTCCCTTTTTCTCC 57.645 34.615 0.00 0.00 0.00 3.71
419 420 5.292101 CGACTGTGACTCTTATGATTTTCCC 59.708 44.000 0.00 0.00 0.00 3.97
421 422 5.348724 TGCGACTGTGACTCTTATGATTTTC 59.651 40.000 0.00 0.00 0.00 2.29
422 423 5.120830 GTGCGACTGTGACTCTTATGATTTT 59.879 40.000 0.00 0.00 0.00 1.82
423 424 4.627467 GTGCGACTGTGACTCTTATGATTT 59.373 41.667 0.00 0.00 0.00 2.17
429 430 0.949397 ACGTGCGACTGTGACTCTTA 59.051 50.000 0.00 0.00 0.00 2.10
440 441 1.981533 GGTTGTTACTCTACGTGCGAC 59.018 52.381 0.00 0.00 0.00 5.19
449 450 5.237779 CCGTGTTGTATTTGGTTGTTACTCT 59.762 40.000 0.00 0.00 0.00 3.24
488 492 4.007659 GGTGAATCTCGTGTTATTTGGGT 58.992 43.478 0.00 0.00 0.00 4.51
500 504 1.140407 GAACGGAGCGGTGAATCTCG 61.140 60.000 0.00 0.00 0.00 4.04
529 533 2.744166 GCCGGATAGGTAGTTTCAACCC 60.744 54.545 5.05 0.00 43.70 4.11
538 542 1.215647 GCGATGGCCGGATAGGTAG 59.784 63.158 5.05 0.00 43.70 3.18
539 543 1.532078 TGCGATGGCCGGATAGGTA 60.532 57.895 5.05 0.00 43.70 3.08
540 544 2.842462 TGCGATGGCCGGATAGGT 60.842 61.111 5.05 0.00 43.70 3.08
541 545 2.357517 GTGCGATGGCCGGATAGG 60.358 66.667 5.05 0.00 41.61 2.57
542 546 1.373497 GAGTGCGATGGCCGGATAG 60.373 63.158 5.05 0.00 41.61 2.08
577 581 2.148558 TTTTCGATTGCGGTTGGCCC 62.149 55.000 0.00 0.00 42.61 5.80
674 679 0.762461 GAGATGGGAGGTGGAGGGAG 60.762 65.000 0.00 0.00 0.00 4.30
675 680 1.314867 GAGATGGGAGGTGGAGGGA 59.685 63.158 0.00 0.00 0.00 4.20
676 681 1.768077 GGAGATGGGAGGTGGAGGG 60.768 68.421 0.00 0.00 0.00 4.30
677 682 1.768077 GGGAGATGGGAGGTGGAGG 60.768 68.421 0.00 0.00 0.00 4.30
686 691 1.826024 CGGAGAAGTGGGAGATGGG 59.174 63.158 0.00 0.00 0.00 4.00
772 778 1.749334 CGGGTGTCTAGAGGATGGGC 61.749 65.000 0.00 0.00 0.00 5.36
780 786 1.748122 GACGGAGCGGGTGTCTAGA 60.748 63.158 0.00 0.00 0.00 2.43
785 791 3.542676 TTGTGACGGAGCGGGTGT 61.543 61.111 0.00 0.00 0.00 4.16
790 796 1.300620 TTCAGGTTGTGACGGAGCG 60.301 57.895 0.00 0.00 33.71 5.03
793 799 1.448497 GGGTTCAGGTTGTGACGGA 59.552 57.895 0.00 0.00 33.71 4.69
796 802 2.258726 GCGGGGTTCAGGTTGTGAC 61.259 63.158 0.00 0.00 33.71 3.67
800 806 2.359975 GGAGCGGGGTTCAGGTTG 60.360 66.667 0.00 0.00 0.00 3.77
801 807 2.529389 AGGAGCGGGGTTCAGGTT 60.529 61.111 0.00 0.00 0.00 3.50
803 809 2.685380 AGAGGAGCGGGGTTCAGG 60.685 66.667 0.00 0.00 0.00 3.86
804 810 2.726351 GGAGAGGAGCGGGGTTCAG 61.726 68.421 0.00 0.00 0.00 3.02
805 811 2.683933 GGAGAGGAGCGGGGTTCA 60.684 66.667 0.00 0.00 0.00 3.18
806 812 3.471806 GGGAGAGGAGCGGGGTTC 61.472 72.222 0.00 0.00 0.00 3.62
813 821 3.520402 CTCGTCTGGGAGAGGAGC 58.480 66.667 9.66 0.00 46.16 4.70
820 828 3.371063 GACACGGCTCGTCTGGGA 61.371 66.667 0.00 0.00 38.32 4.37
824 832 2.549611 GATGCTGACACGGCTCGTCT 62.550 60.000 0.00 0.00 38.32 4.18
826 834 2.125912 GATGCTGACACGGCTCGT 60.126 61.111 0.00 0.00 42.36 4.18
851 859 0.467659 CTAGGGTTCGGAGGATCGGT 60.468 60.000 0.00 0.00 36.72 4.69
976 985 4.090057 GCGTCACGGGCAAAGCTC 62.090 66.667 0.00 0.00 0.00 4.09
1273 1297 4.722535 AGGGAGAGCCTTGGCGGA 62.723 66.667 5.95 0.00 33.16 5.54
1276 1300 2.270527 GACAGGGAGAGCCTTGGC 59.729 66.667 2.97 2.97 45.06 4.52
1902 1932 0.320247 CACTGCTCTGTCTGACCACC 60.320 60.000 5.17 0.00 0.00 4.61
1908 1938 3.117171 GCGGCACTGCTCTGTCTG 61.117 66.667 0.00 0.00 0.00 3.51
1923 1953 4.099170 GCAGCAGCACCAAGAGCG 62.099 66.667 0.00 0.00 41.58 5.03
1971 2001 0.178903 AGCAGGAGTTCACCCACCTA 60.179 55.000 0.00 0.00 0.00 3.08
2010 2040 1.270305 GGTACAGTCACAGCAGCAAGA 60.270 52.381 0.00 0.00 0.00 3.02
2052 2082 3.735037 GATGGACCTCGGTTCCGCC 62.735 68.421 6.35 2.79 0.00 6.13
2058 2088 2.058595 CGAAGGGATGGACCTCGGT 61.059 63.158 0.00 0.00 40.87 4.69
2134 2164 3.772025 ACTCATGGAAGACTGGGAGTTAG 59.228 47.826 0.00 0.00 32.04 2.34
2197 2227 9.045223 GGAAAATATATGAAACCTGAAATTGCC 57.955 33.333 0.00 0.00 0.00 4.52
2231 2262 4.874970 AGATCACAATGTCCAAAACTTGC 58.125 39.130 0.00 0.00 0.00 4.01
2264 2295 6.268617 TGAATCATCATACCTGAAGGACTAGG 59.731 42.308 2.62 0.00 40.01 3.02
2267 2298 5.664908 ACTGAATCATCATACCTGAAGGACT 59.335 40.000 2.62 0.00 35.34 3.85
2338 2369 4.237724 GCCTGCAATAAAGAAGTCCAAAC 58.762 43.478 0.00 0.00 0.00 2.93
2489 2521 4.082787 CGGTTAGAATTCATGCCAACAAGT 60.083 41.667 8.44 0.00 0.00 3.16
2512 2544 7.672239 ACCTATTCAGATAAGGAGGATACAGAC 59.328 40.741 5.71 0.00 41.41 3.51
2514 2546 7.671819 TCACCTATTCAGATAAGGAGGATACAG 59.328 40.741 5.71 0.00 41.41 2.74
2563 2595 1.186200 CCTCATCTTGGACGACTCCA 58.814 55.000 0.00 0.00 45.68 3.86
2575 2607 1.895798 TCGAGCACAAAGTCCTCATCT 59.104 47.619 0.00 0.00 0.00 2.90
2627 2659 2.269978 GCAGGAAGCAAAGATGGCA 58.730 52.632 0.00 0.00 44.79 4.92
2659 2691 7.769272 ACTTGTGTCAAATTACAACATTTGG 57.231 32.000 6.36 0.00 42.28 3.28
2671 2703 7.523293 TGGTATCATCAAACTTGTGTCAAAT 57.477 32.000 0.00 0.00 0.00 2.32
2672 2704 6.951062 TGGTATCATCAAACTTGTGTCAAA 57.049 33.333 0.00 0.00 0.00 2.69
2729 2802 9.936759 TCAGCACATTAATATATTTACATCCGA 57.063 29.630 2.68 0.00 0.00 4.55
2730 2803 9.973246 GTCAGCACATTAATATATTTACATCCG 57.027 33.333 2.68 0.00 0.00 4.18
2764 2839 8.608317 ACACAACCAATTTAACATTTTAAGCAC 58.392 29.630 0.00 0.00 0.00 4.40
2783 2858 7.704472 TCACATTATCAACTTGAAAACACAACC 59.296 33.333 0.00 0.00 0.00 3.77
2794 2869 7.094677 TGACTTCCATGTCACATTATCAACTTG 60.095 37.037 0.00 0.00 41.43 3.16
2817 2894 4.705507 TCAATCTACTAGTGGACCAGTGAC 59.294 45.833 11.56 0.00 0.00 3.67
2831 2908 6.328672 AGGCTCTTATGAACCATCAATCTACT 59.671 38.462 1.32 0.00 39.49 2.57
2835 2912 4.759183 GGAGGCTCTTATGAACCATCAATC 59.241 45.833 15.23 0.00 39.49 2.67
2840 2917 3.718434 TCATGGAGGCTCTTATGAACCAT 59.282 43.478 23.21 11.82 37.16 3.55
2845 2922 4.033009 TCAAGTCATGGAGGCTCTTATGA 58.967 43.478 22.26 22.26 0.00 2.15
2872 2949 7.801783 GTGTAAACTAATTTCAGAAAACGGAGG 59.198 37.037 0.00 0.00 0.00 4.30
2877 2964 9.665264 CTCCAGTGTAAACTAATTTCAGAAAAC 57.335 33.333 0.00 0.00 0.00 2.43
2912 2999 3.023119 AGCAACCAACAACTGATCAACA 58.977 40.909 0.00 0.00 0.00 3.33
2913 3000 3.715628 AGCAACCAACAACTGATCAAC 57.284 42.857 0.00 0.00 0.00 3.18
2927 3014 2.799562 GCACACTCTGGAAAAAGCAACC 60.800 50.000 0.00 0.00 0.00 3.77
2928 3015 2.463876 GCACACTCTGGAAAAAGCAAC 58.536 47.619 0.00 0.00 0.00 4.17
2971 3058 1.681264 CTGTTGTTTCTGTTGTCCCCC 59.319 52.381 0.00 0.00 0.00 5.40
3072 3159 2.749076 TGACAAACATAGCACATGAGCC 59.251 45.455 11.77 0.00 34.23 4.70
3172 3259 8.192110 TCATGGTCAATGTGATCATAAATTGTG 58.808 33.333 19.70 14.11 45.76 3.33
3178 3265 6.263617 CCACATCATGGTCAATGTGATCATAA 59.736 38.462 20.95 0.00 45.76 1.90
3245 3332 0.972883 GGGTTGGTTTAGCATTGCCA 59.027 50.000 4.70 0.00 0.00 4.92
3274 3361 1.065709 TGCAGCAGAGATCATCAGCAA 60.066 47.619 0.00 0.00 42.63 3.91
3275 3362 0.539986 TGCAGCAGAGATCATCAGCA 59.460 50.000 0.00 0.00 42.63 4.41
3276 3363 1.885560 ATGCAGCAGAGATCATCAGC 58.114 50.000 0.00 0.00 40.59 4.26
3543 3651 6.367983 AGTAACAGGATGAACAATATGGCAT 58.632 36.000 4.88 4.88 39.69 4.40
3544 3652 5.754782 AGTAACAGGATGAACAATATGGCA 58.245 37.500 0.00 0.00 39.69 4.92
3565 3673 1.947456 GAACCAAAACTCTCCGCAAGT 59.053 47.619 0.00 0.00 0.00 3.16
3585 3693 5.243730 ACAAACATGTAGGATTCAACAAGGG 59.756 40.000 0.00 0.00 0.00 3.95
3586 3694 6.331369 ACAAACATGTAGGATTCAACAAGG 57.669 37.500 0.00 0.00 0.00 3.61
3588 3696 6.983307 CCAAACAAACATGTAGGATTCAACAA 59.017 34.615 0.00 0.00 0.00 2.83
3589 3697 6.097554 ACCAAACAAACATGTAGGATTCAACA 59.902 34.615 0.00 0.00 0.00 3.33
3590 3698 6.420604 CACCAAACAAACATGTAGGATTCAAC 59.579 38.462 0.00 0.00 0.00 3.18
3591 3699 6.322456 TCACCAAACAAACATGTAGGATTCAA 59.678 34.615 0.00 0.00 0.00 2.69
3599 3707 6.334202 GTTTCCTTCACCAAACAAACATGTA 58.666 36.000 0.00 0.00 33.45 2.29
3613 3721 1.104577 TTGGCCGTGGTTTCCTTCAC 61.105 55.000 0.00 0.00 0.00 3.18
3626 3734 2.031157 AGACGAGTTTCAAAATTGGCCG 60.031 45.455 0.00 0.00 0.00 6.13
3642 3778 2.239400 ACATCACCTGAGACAAGACGA 58.761 47.619 0.00 0.00 0.00 4.20
3649 3785 1.541588 GGCCAAAACATCACCTGAGAC 59.458 52.381 0.00 0.00 0.00 3.36
3652 3788 1.962807 CAAGGCCAAAACATCACCTGA 59.037 47.619 5.01 0.00 0.00 3.86
3657 3793 1.202510 GCACACAAGGCCAAAACATCA 60.203 47.619 5.01 0.00 0.00 3.07
3664 3800 2.192861 CCGAAGCACACAAGGCCAA 61.193 57.895 5.01 0.00 0.00 4.52
3676 3812 0.951558 ACAATCCACAACACCGAAGC 59.048 50.000 0.00 0.00 0.00 3.86
3682 3818 4.156556 AGCACATATCACAATCCACAACAC 59.843 41.667 0.00 0.00 0.00 3.32
3689 3825 3.499918 GCTGGTAGCACATATCACAATCC 59.500 47.826 0.00 0.00 41.89 3.01
3703 3839 2.113860 TTTGGACATCTGCTGGTAGC 57.886 50.000 0.00 0.00 42.82 3.58
3704 3840 3.679389 AGTTTTGGACATCTGCTGGTAG 58.321 45.455 0.00 0.00 0.00 3.18
3706 3842 2.624838 CAAGTTTTGGACATCTGCTGGT 59.375 45.455 0.00 0.00 0.00 4.00
3707 3843 2.886523 TCAAGTTTTGGACATCTGCTGG 59.113 45.455 0.00 0.00 0.00 4.85
3708 3844 3.057736 CCTCAAGTTTTGGACATCTGCTG 60.058 47.826 0.00 0.00 0.00 4.41
3709 3845 3.152341 CCTCAAGTTTTGGACATCTGCT 58.848 45.455 0.00 0.00 0.00 4.24
3713 3849 2.887152 ACAGCCTCAAGTTTTGGACATC 59.113 45.455 0.00 0.00 0.00 3.06
3714 3850 2.887152 GACAGCCTCAAGTTTTGGACAT 59.113 45.455 0.00 0.00 0.00 3.06
3716 3852 2.297701 TGACAGCCTCAAGTTTTGGAC 58.702 47.619 0.00 0.00 0.00 4.02
3718 3854 4.326504 AATTGACAGCCTCAAGTTTTGG 57.673 40.909 1.32 0.00 42.36 3.28
3719 3855 7.869429 AGAAATAATTGACAGCCTCAAGTTTTG 59.131 33.333 0.56 0.00 42.36 2.44
3722 3858 7.530426 AAGAAATAATTGACAGCCTCAAGTT 57.470 32.000 0.56 0.00 42.36 2.66
3724 3860 7.596494 TGAAAGAAATAATTGACAGCCTCAAG 58.404 34.615 1.32 0.00 42.36 3.02
3728 3864 7.820872 CCATTTGAAAGAAATAATTGACAGCCT 59.179 33.333 0.00 0.00 0.00 4.58
3730 3866 8.538409 ACCATTTGAAAGAAATAATTGACAGC 57.462 30.769 0.00 0.00 0.00 4.40
3745 3881 8.782144 GCAATAAAGAATCCAAACCATTTGAAA 58.218 29.630 2.86 0.00 43.26 2.69
3747 3883 7.448420 TGCAATAAAGAATCCAAACCATTTGA 58.552 30.769 2.86 0.00 43.26 2.69
3748 3884 7.148373 CCTGCAATAAAGAATCCAAACCATTTG 60.148 37.037 0.00 0.00 40.32 2.32
3749 3885 6.880529 CCTGCAATAAAGAATCCAAACCATTT 59.119 34.615 0.00 0.00 0.00 2.32
3751 3887 5.627503 GCCTGCAATAAAGAATCCAAACCAT 60.628 40.000 0.00 0.00 0.00 3.55
3752 3888 4.322650 GCCTGCAATAAAGAATCCAAACCA 60.323 41.667 0.00 0.00 0.00 3.67
3753 3889 4.183865 GCCTGCAATAAAGAATCCAAACC 58.816 43.478 0.00 0.00 0.00 3.27
3754 3890 4.819769 TGCCTGCAATAAAGAATCCAAAC 58.180 39.130 0.00 0.00 0.00 2.93
3755 3891 5.663456 GATGCCTGCAATAAAGAATCCAAA 58.337 37.500 0.00 0.00 0.00 3.28
3757 3893 3.316029 CGATGCCTGCAATAAAGAATCCA 59.684 43.478 0.00 0.00 0.00 3.41
3758 3894 3.316308 ACGATGCCTGCAATAAAGAATCC 59.684 43.478 0.00 0.00 0.00 3.01
3759 3895 4.285292 CACGATGCCTGCAATAAAGAATC 58.715 43.478 0.00 0.00 0.00 2.52
3760 3896 3.489738 GCACGATGCCTGCAATAAAGAAT 60.490 43.478 0.00 0.00 37.42 2.40
3763 3899 1.132834 TGCACGATGCCTGCAATAAAG 59.867 47.619 0.00 0.00 44.23 1.85
3764 3900 1.135431 GTGCACGATGCCTGCAATAAA 60.135 47.619 0.00 0.00 46.04 1.40
3765 3901 0.451383 GTGCACGATGCCTGCAATAA 59.549 50.000 0.00 0.00 46.04 1.40
3766 3902 1.375853 GGTGCACGATGCCTGCAATA 61.376 55.000 11.45 0.00 46.04 1.90
3767 3903 2.703798 GGTGCACGATGCCTGCAAT 61.704 57.895 11.45 0.00 46.04 3.56
3768 3904 3.364441 GGTGCACGATGCCTGCAA 61.364 61.111 11.45 0.00 46.04 4.08
3769 3905 3.848301 AAGGTGCACGATGCCTGCA 62.848 57.895 11.45 0.00 44.23 4.41
3770 3906 2.146073 AAAAGGTGCACGATGCCTGC 62.146 55.000 11.45 0.00 44.23 4.85
3771 3907 1.131126 CTAAAAGGTGCACGATGCCTG 59.869 52.381 11.45 0.00 44.23 4.85
3772 3908 1.271379 ACTAAAAGGTGCACGATGCCT 60.271 47.619 11.45 0.00 44.23 4.75
3773 3909 1.165270 ACTAAAAGGTGCACGATGCC 58.835 50.000 11.45 0.00 44.23 4.40
3774 3910 3.374058 ACATACTAAAAGGTGCACGATGC 59.626 43.478 11.45 0.00 45.29 3.91
3775 3911 5.323900 CAACATACTAAAAGGTGCACGATG 58.676 41.667 11.45 6.44 0.00 3.84
3776 3912 4.394920 CCAACATACTAAAAGGTGCACGAT 59.605 41.667 11.45 0.00 0.00 3.73
3777 3913 3.749088 CCAACATACTAAAAGGTGCACGA 59.251 43.478 11.45 0.00 0.00 4.35
3778 3914 3.669557 GCCAACATACTAAAAGGTGCACG 60.670 47.826 11.45 0.00 0.00 5.34
3779 3915 3.366985 GGCCAACATACTAAAAGGTGCAC 60.367 47.826 8.80 8.80 0.00 4.57
3780 3916 2.823154 GGCCAACATACTAAAAGGTGCA 59.177 45.455 0.00 0.00 0.00 4.57
3781 3917 2.159435 CGGCCAACATACTAAAAGGTGC 60.159 50.000 2.24 0.00 0.00 5.01
3784 3920 2.088423 TGCGGCCAACATACTAAAAGG 58.912 47.619 2.24 0.00 0.00 3.11
3837 3983 4.935205 ACATATTTTGCACTCGCTCAGTTA 59.065 37.500 0.00 0.00 39.64 2.24
3878 4052 9.525826 AGAAGATTCTTTGAATACAAGACCAAT 57.474 29.630 0.00 0.00 37.32 3.16
3909 4083 9.466497 AAGAATCCTTCATATACTTGCTCAAAA 57.534 29.630 0.00 0.00 0.00 2.44
3923 4097 5.426689 TGACAGCTACAAGAATCCTTCAT 57.573 39.130 0.00 0.00 0.00 2.57
3980 4154 4.778534 AGATCAAAATCAACAGCACAGG 57.221 40.909 0.00 0.00 34.07 4.00
4015 4189 8.106247 TCGTATACTTGCTCAAAAAGGAAATT 57.894 30.769 0.56 0.00 34.60 1.82
4016 4190 7.681939 TCGTATACTTGCTCAAAAAGGAAAT 57.318 32.000 0.56 0.00 34.60 2.17
4020 4194 5.642063 TCCTTCGTATACTTGCTCAAAAAGG 59.358 40.000 0.56 0.00 0.00 3.11
4066 4241 5.361857 AGCCCAGATGTTCATATTTCTTTGG 59.638 40.000 0.00 0.00 0.00 3.28
4087 4262 6.714356 AGATCTTTTAGCAAGGATCATAAGCC 59.286 38.462 10.33 0.00 44.41 4.35
4122 4297 5.153513 GTTCAATATTTTGACAGAAGCGCA 58.846 37.500 11.47 0.00 41.50 6.09
4138 4313 6.489700 TCTTTTGATGTCTTGCTGGTTCAATA 59.510 34.615 0.00 0.00 0.00 1.90
4146 4321 8.975410 TGAATATTTCTTTTGATGTCTTGCTG 57.025 30.769 0.00 0.00 0.00 4.41
4150 4325 7.752239 CACGCTGAATATTTCTTTTGATGTCTT 59.248 33.333 0.00 0.00 0.00 3.01
4154 4329 5.801444 TGCACGCTGAATATTTCTTTTGATG 59.199 36.000 0.00 0.00 0.00 3.07
4166 4341 2.807967 GCTAATGGATGCACGCTGAATA 59.192 45.455 0.00 0.00 0.00 1.75
4168 4343 1.016627 GCTAATGGATGCACGCTGAA 58.983 50.000 0.00 0.00 0.00 3.02
4172 4347 1.887242 TCGGCTAATGGATGCACGC 60.887 57.895 0.00 0.00 0.00 5.34
4173 4348 1.821241 CGTCGGCTAATGGATGCACG 61.821 60.000 0.00 0.00 0.00 5.34
4174 4349 0.810031 ACGTCGGCTAATGGATGCAC 60.810 55.000 0.00 0.00 0.00 4.57
4190 4366 1.270358 GGGCTGTCTCAGAAGAAACGT 60.270 52.381 0.66 0.00 32.44 3.99
4201 4377 0.616111 TTGAGAGGGAGGGCTGTCTC 60.616 60.000 0.00 0.00 36.72 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.