Multiple sequence alignment - TraesCS5A01G401800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G401800 chr5A 100.000 3146 0 0 1 3146 594769755 594772900 0.000000e+00 5810.0
1 TraesCS5A01G401800 chr5A 88.396 293 22 6 2091 2382 486468300 486468019 3.000000e-90 342.0
2 TraesCS5A01G401800 chr5A 98.630 73 0 1 212 284 594769898 594769969 9.160000e-26 128.0
3 TraesCS5A01G401800 chr5A 98.630 73 0 1 144 215 594769966 594770038 9.160000e-26 128.0
4 TraesCS5A01G401800 chr5D 89.855 2612 118 46 205 2778 475381325 475383827 0.000000e+00 3219.0
5 TraesCS5A01G401800 chr5D 86.036 222 25 6 1 217 475381188 475381408 1.890000e-57 233.0
6 TraesCS5A01G401800 chr5B 92.677 2144 83 21 674 2778 582773189 582775297 0.000000e+00 3022.0
7 TraesCS5A01G401800 chr5B 88.225 552 27 13 428 969 582772447 582772970 2.660000e-175 625.0
8 TraesCS5A01G401800 chr6A 87.333 300 25 3 2090 2382 217309505 217309798 6.500000e-87 331.0
9 TraesCS5A01G401800 chr6A 91.333 150 13 0 1259 1408 500083776 500083627 4.110000e-49 206.0
10 TraesCS5A01G401800 chr6A 85.965 171 20 1 2090 2260 407124940 407125106 2.490000e-41 180.0
11 TraesCS5A01G401800 chr6A 100.000 52 0 0 2777 2828 14194070 14194121 2.580000e-16 97.1
12 TraesCS5A01G401800 chr6A 87.805 82 6 3 2308 2389 407125397 407125474 3.340000e-15 93.5
13 TraesCS5A01G401800 chr1A 86.644 292 27 5 2091 2382 119396887 119397166 2.360000e-81 313.0
14 TraesCS5A01G401800 chr1A 100.000 54 0 0 2777 2830 554070776 554070829 2.000000e-17 100.0
15 TraesCS5A01G401800 chr2A 91.124 169 11 3 2221 2389 60653047 60652883 3.160000e-55 226.0
16 TraesCS5A01G401800 chr2A 89.412 170 15 3 1239 1408 35975998 35976164 8.840000e-51 211.0
17 TraesCS5A01G401800 chr2A 86.885 122 12 1 2091 2212 60668420 60668303 1.970000e-27 134.0
18 TraesCS5A01G401800 chr2D 89.412 170 15 2 1239 1408 32763253 32763419 8.840000e-51 211.0
19 TraesCS5A01G401800 chr2B 89.412 170 15 2 1239 1408 54440321 54440487 8.840000e-51 211.0
20 TraesCS5A01G401800 chr2B 100.000 54 0 0 2777 2830 664650502 664650449 2.000000e-17 100.0
21 TraesCS5A01G401800 chr6D 91.333 150 13 0 1259 1408 358326157 358326008 4.110000e-49 206.0
22 TraesCS5A01G401800 chr7A 85.492 193 26 2 1218 1410 177136125 177136315 1.910000e-47 200.0
23 TraesCS5A01G401800 chr7D 86.517 178 24 0 1233 1410 174992588 174992765 2.480000e-46 196.0
24 TraesCS5A01G401800 chr6B 100.000 54 0 0 2777 2830 582351108 582351161 2.000000e-17 100.0
25 TraesCS5A01G401800 chr6B 100.000 54 0 0 2777 2830 582351854 582351907 2.000000e-17 100.0
26 TraesCS5A01G401800 chr1B 98.246 57 1 0 2777 2833 662544598 662544654 2.000000e-17 100.0
27 TraesCS5A01G401800 chr4B 100.000 53 0 0 2777 2829 537819761 537819709 7.180000e-17 99.0
28 TraesCS5A01G401800 chr7B 100.000 52 0 0 2777 2828 120736932 120736881 2.580000e-16 97.1
29 TraesCS5A01G401800 chrUn 98.182 55 0 1 2777 2830 41907047 41907101 9.290000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G401800 chr5A 594769755 594772900 3145 False 2022.0 5810 99.086667 1 3146 3 chr5A.!!$F1 3145
1 TraesCS5A01G401800 chr5D 475381188 475383827 2639 False 1726.0 3219 87.945500 1 2778 2 chr5D.!!$F1 2777
2 TraesCS5A01G401800 chr5B 582772447 582775297 2850 False 1823.5 3022 90.451000 428 2778 2 chr5B.!!$F1 2350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
982 1519 0.03213 TTGAGCTCGAGTGTTCGCTT 59.968 50.0 15.13 0.0 46.28 4.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2975 3556 0.179045 GCAGGTGAATCTATGCCGGT 60.179 55.0 1.9 0.0 32.49 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.268076 GCCGTGATGTTGTTGCCCT 61.268 57.895 0.00 0.00 0.00 5.19
27 28 1.805428 GCCGTGATGTTGTTGCCCTT 61.805 55.000 0.00 0.00 0.00 3.95
66 67 7.889873 TGTCTTAAAGGAATTGAAAGTCCAA 57.110 32.000 11.74 0.00 45.23 3.53
74 75 6.546484 AGGAATTGAAAGTCCAATCTCTTGA 58.454 36.000 11.74 0.00 45.23 3.02
77 78 7.758528 GGAATTGAAAGTCCAATCTCTTGAATG 59.241 37.037 4.70 0.00 42.49 2.67
82 83 6.814506 AAGTCCAATCTCTTGAATGTCTTG 57.185 37.500 0.00 0.00 34.04 3.02
91 92 7.857734 TCTCTTGAATGTCTTGTTTGTTGTA 57.142 32.000 0.00 0.00 0.00 2.41
92 93 7.693952 TCTCTTGAATGTCTTGTTTGTTGTAC 58.306 34.615 0.00 0.00 0.00 2.90
93 94 6.482835 TCTTGAATGTCTTGTTTGTTGTACG 58.517 36.000 0.00 0.00 0.00 3.67
99 100 6.964741 TGTCTTGTTTGTTGTACGAACTAA 57.035 33.333 10.38 5.73 41.83 2.24
100 101 7.542534 TGTCTTGTTTGTTGTACGAACTAAT 57.457 32.000 10.38 0.00 41.83 1.73
135 137 3.055675 TCCTTTGTACGACCCGAAATCAT 60.056 43.478 0.00 0.00 0.00 2.45
141 143 2.618053 ACGACCCGAAATCATTGAGTC 58.382 47.619 0.00 0.00 0.00 3.36
150 152 4.259970 CGAAATCATTGAGTCGGTGATGTC 60.260 45.833 13.78 13.78 34.64 3.06
164 166 6.961554 GTCGGTGATGTCAAATTGAATTACTC 59.038 38.462 0.00 0.00 0.00 2.59
213 215 9.533253 AATTGTTGATTTTCTTTTGAGGTAGTG 57.467 29.630 0.00 0.00 0.00 2.74
214 216 7.639113 TGTTGATTTTCTTTTGAGGTAGTGT 57.361 32.000 0.00 0.00 0.00 3.55
215 217 8.740123 TGTTGATTTTCTTTTGAGGTAGTGTA 57.260 30.769 0.00 0.00 0.00 2.90
216 218 9.349713 TGTTGATTTTCTTTTGAGGTAGTGTAT 57.650 29.630 0.00 0.00 0.00 2.29
217 219 9.612620 GTTGATTTTCTTTTGAGGTAGTGTATG 57.387 33.333 0.00 0.00 0.00 2.39
218 220 8.918202 TGATTTTCTTTTGAGGTAGTGTATGT 57.082 30.769 0.00 0.00 0.00 2.29
219 221 8.999431 TGATTTTCTTTTGAGGTAGTGTATGTC 58.001 33.333 0.00 0.00 0.00 3.06
220 222 8.918202 ATTTTCTTTTGAGGTAGTGTATGTCA 57.082 30.769 0.00 0.00 0.00 3.58
221 223 8.740123 TTTTCTTTTGAGGTAGTGTATGTCAA 57.260 30.769 0.00 0.00 0.00 3.18
222 224 8.740123 TTTCTTTTGAGGTAGTGTATGTCAAA 57.260 30.769 0.00 0.00 35.78 2.69
223 225 8.918202 TTCTTTTGAGGTAGTGTATGTCAAAT 57.082 30.769 0.00 0.00 37.08 2.32
224 226 8.918202 TCTTTTGAGGTAGTGTATGTCAAATT 57.082 30.769 0.00 0.00 37.08 1.82
225 227 8.783093 TCTTTTGAGGTAGTGTATGTCAAATTG 58.217 33.333 0.00 0.00 37.08 2.32
226 228 8.684386 TTTTGAGGTAGTGTATGTCAAATTGA 57.316 30.769 0.00 0.00 37.08 2.57
227 229 8.684386 TTTGAGGTAGTGTATGTCAAATTGAA 57.316 30.769 0.00 0.00 33.33 2.69
228 230 8.862325 TTGAGGTAGTGTATGTCAAATTGAAT 57.138 30.769 0.00 0.00 0.00 2.57
229 231 8.862325 TGAGGTAGTGTATGTCAAATTGAATT 57.138 30.769 0.00 0.00 0.00 2.17
230 232 9.952030 TGAGGTAGTGTATGTCAAATTGAATTA 57.048 29.630 0.00 0.00 0.00 1.40
232 234 9.959721 AGGTAGTGTATGTCAAATTGAATTACT 57.040 29.630 13.94 9.77 0.00 2.24
283 285 7.639113 TGTTGATTTTCTTTTGAGGTAGTGT 57.361 32.000 0.00 0.00 0.00 3.55
305 307 6.575942 GTGTTATTTGCCGTTATTTATAGCCG 59.424 38.462 0.00 0.00 0.00 5.52
310 312 4.378774 TGCCGTTATTTATAGCCGCTTAA 58.621 39.130 0.00 0.00 0.00 1.85
318 320 9.338291 GTTATTTATAGCCGCTTAATTTTAGCC 57.662 33.333 0.00 0.00 35.18 3.93
319 321 5.952526 TTATAGCCGCTTAATTTTAGCCC 57.047 39.130 0.00 0.00 35.18 5.19
320 322 2.437085 AGCCGCTTAATTTTAGCCCT 57.563 45.000 2.07 0.00 35.18 5.19
321 323 2.024414 AGCCGCTTAATTTTAGCCCTG 58.976 47.619 2.07 0.00 35.18 4.45
341 343 3.167485 TGGCTTTGATGAATTCTGGCTT 58.833 40.909 7.05 0.00 0.00 4.35
342 344 3.579586 TGGCTTTGATGAATTCTGGCTTT 59.420 39.130 7.05 0.00 0.00 3.51
343 345 4.771577 TGGCTTTGATGAATTCTGGCTTTA 59.228 37.500 7.05 0.00 0.00 1.85
344 346 5.105063 GGCTTTGATGAATTCTGGCTTTAC 58.895 41.667 7.05 0.00 0.00 2.01
346 348 5.105595 GCTTTGATGAATTCTGGCTTTACCT 60.106 40.000 7.05 0.00 40.22 3.08
354 356 1.168714 CTGGCTTTACCTCTGTTGCC 58.831 55.000 0.00 0.00 40.22 4.52
355 357 0.251165 TGGCTTTACCTCTGTTGCCC 60.251 55.000 0.00 0.00 39.60 5.36
356 358 0.965866 GGCTTTACCTCTGTTGCCCC 60.966 60.000 0.00 0.00 34.81 5.80
357 359 0.965866 GCTTTACCTCTGTTGCCCCC 60.966 60.000 0.00 0.00 0.00 5.40
358 360 0.676782 CTTTACCTCTGTTGCCCCCG 60.677 60.000 0.00 0.00 0.00 5.73
359 361 2.132089 TTTACCTCTGTTGCCCCCGG 62.132 60.000 0.00 0.00 0.00 5.73
373 375 1.467678 CCCCGGCAAACCATTGTTCA 61.468 55.000 0.00 0.00 38.85 3.18
376 378 1.202463 CCGGCAAACCATTGTTCAACA 60.202 47.619 0.00 0.00 38.85 3.33
385 387 7.383572 GCAAACCATTGTTCAACATTGTGTATA 59.616 33.333 10.71 0.00 38.85 1.47
386 388 9.421806 CAAACCATTGTTCAACATTGTGTATAT 57.578 29.630 10.71 0.00 32.15 0.86
411 413 4.635473 TCCATAAAGAGAGGACCCTGATT 58.365 43.478 0.00 0.00 0.00 2.57
484 498 5.127845 TGAGCTGGTCTAAGGAATTGAGTAG 59.872 44.000 8.47 0.00 0.00 2.57
485 499 4.407296 AGCTGGTCTAAGGAATTGAGTAGG 59.593 45.833 0.00 0.00 0.00 3.18
486 500 4.698575 CTGGTCTAAGGAATTGAGTAGGC 58.301 47.826 0.00 0.00 0.00 3.93
487 501 4.101114 TGGTCTAAGGAATTGAGTAGGCA 58.899 43.478 0.00 0.00 0.00 4.75
614 628 1.302285 CAATGAGCCTCAGCCCAGT 59.698 57.895 0.00 0.00 41.25 4.00
649 663 9.521841 CACTCTACCTACATTCCTCAGATAATA 57.478 37.037 0.00 0.00 0.00 0.98
672 686 5.848286 ATAATATCCAGATGCTCCAACCA 57.152 39.130 0.00 0.00 0.00 3.67
688 702 6.142818 TCCAACCAGACAACAAAAATGTAG 57.857 37.500 0.00 0.00 0.00 2.74
690 704 6.829298 TCCAACCAGACAACAAAAATGTAGTA 59.171 34.615 0.00 0.00 0.00 1.82
692 706 7.201785 CCAACCAGACAACAAAAATGTAGTACT 60.202 37.037 0.00 0.00 0.00 2.73
693 707 8.832521 CAACCAGACAACAAAAATGTAGTACTA 58.167 33.333 0.00 0.00 0.00 1.82
694 708 8.603242 ACCAGACAACAAAAATGTAGTACTAG 57.397 34.615 1.87 0.00 0.00 2.57
747 761 4.102524 TCAAGACAAAGCTAACCCTCTGAA 59.897 41.667 0.00 0.00 0.00 3.02
756 770 2.821991 AACCCTCTGAAGTCTGAACG 57.178 50.000 0.00 0.00 0.00 3.95
778 792 3.003793 GGAGACAAAGGCACAGAAAGAAC 59.996 47.826 0.00 0.00 0.00 3.01
779 793 2.952310 AGACAAAGGCACAGAAAGAACC 59.048 45.455 0.00 0.00 0.00 3.62
780 794 2.687935 GACAAAGGCACAGAAAGAACCA 59.312 45.455 0.00 0.00 0.00 3.67
781 795 3.096092 ACAAAGGCACAGAAAGAACCAA 58.904 40.909 0.00 0.00 0.00 3.67
782 796 3.513515 ACAAAGGCACAGAAAGAACCAAA 59.486 39.130 0.00 0.00 0.00 3.28
783 797 4.114794 CAAAGGCACAGAAAGAACCAAAG 58.885 43.478 0.00 0.00 0.00 2.77
784 798 1.683385 AGGCACAGAAAGAACCAAAGC 59.317 47.619 0.00 0.00 0.00 3.51
785 799 1.600413 GGCACAGAAAGAACCAAAGCG 60.600 52.381 0.00 0.00 0.00 4.68
893 921 1.142936 CCACCCCATGATCTGATCCA 58.857 55.000 14.71 4.05 0.00 3.41
905 1442 1.280133 TCTGATCCACAAAGCTCCTGG 59.720 52.381 0.00 0.00 0.00 4.45
982 1519 0.032130 TTGAGCTCGAGTGTTCGCTT 59.968 50.000 15.13 0.00 46.28 4.68
995 1532 3.741476 CGCTTGCTTGCCCTCCAC 61.741 66.667 0.00 0.00 0.00 4.02
1041 1578 4.790962 ACGGCCATGGAGCAGCAG 62.791 66.667 18.40 2.38 0.00 4.24
1044 1581 3.518998 GCCATGGAGCAGCAGCAG 61.519 66.667 18.40 0.00 45.49 4.24
1045 1582 3.518998 CCATGGAGCAGCAGCAGC 61.519 66.667 5.56 0.46 45.49 5.25
1046 1583 2.750237 CATGGAGCAGCAGCAGCA 60.750 61.111 12.92 0.00 45.49 4.41
1047 1584 2.438614 ATGGAGCAGCAGCAGCAG 60.439 61.111 12.92 0.00 45.49 4.24
1317 1860 5.347620 ACTACAACAACTACAACCTCACA 57.652 39.130 0.00 0.00 0.00 3.58
1830 2397 4.087892 GAGCTCAAGCCGCCCTCA 62.088 66.667 9.40 0.00 43.38 3.86
1842 2409 1.596934 GCCCTCATCTTCACCGTCA 59.403 57.895 0.00 0.00 0.00 4.35
2055 2622 2.747460 CCACCCACCATGTCGCTG 60.747 66.667 0.00 0.00 0.00 5.18
2088 2655 4.514577 CAGTACTGGAGCGGCGGG 62.515 72.222 15.49 0.00 0.00 6.13
2149 2716 2.974698 GCGCCTTCCCATGATCGG 60.975 66.667 0.00 0.00 0.00 4.18
2319 2886 4.615961 CGAGTAACTTCGGTTTACTGTCTG 59.384 45.833 8.41 0.00 39.17 3.51
2389 2959 7.014422 GCTGGTATAGTGGTATAGTCTTCAAGT 59.986 40.741 0.00 0.00 0.00 3.16
2399 2969 2.252714 AGTCTTCAAGTCAGGAGGGTC 58.747 52.381 0.00 0.00 0.00 4.46
2425 2995 3.361786 GCAAATTATGGTGGGGTGTAGT 58.638 45.455 0.00 0.00 0.00 2.73
2493 3071 7.030165 TGTGTGTTTGTGTAAGGTTACATTTG 58.970 34.615 5.88 0.00 44.59 2.32
2499 3077 7.706281 TTGTGTAAGGTTACATTTGCATTTG 57.294 32.000 5.88 0.00 44.59 2.32
2500 3078 5.694006 TGTGTAAGGTTACATTTGCATTTGC 59.306 36.000 5.88 0.00 44.59 3.68
2561 3142 4.465632 ACTTCACTTTGGTCCCAAAAAC 57.534 40.909 12.29 0.00 44.07 2.43
2562 3143 3.835395 ACTTCACTTTGGTCCCAAAAACA 59.165 39.130 12.29 0.00 44.07 2.83
2563 3144 4.284746 ACTTCACTTTGGTCCCAAAAACAA 59.715 37.500 12.29 4.88 44.07 2.83
2564 3145 4.891992 TCACTTTGGTCCCAAAAACAAA 57.108 36.364 12.29 0.00 44.07 2.83
2565 3146 5.228945 TCACTTTGGTCCCAAAAACAAAA 57.771 34.783 12.29 0.00 44.07 2.44
2566 3147 5.621193 TCACTTTGGTCCCAAAAACAAAAA 58.379 33.333 12.29 0.00 44.07 1.94
2573 3154 5.098893 GGTCCCAAAAACAAAAATGCAAAC 58.901 37.500 0.00 0.00 0.00 2.93
2589 3170 1.682740 AAACGTACACAGGTTTGGGG 58.317 50.000 0.00 0.00 40.32 4.96
2596 3177 2.203422 CAGGTTTGGGGGTCGCAA 60.203 61.111 0.00 0.00 34.59 4.85
2600 3181 2.281208 TTTGGGGGTCGCAACTCG 60.281 61.111 0.00 0.00 36.09 4.18
2719 3300 3.874706 CATTGATGCTTCGCTGATTCTC 58.125 45.455 0.00 0.00 0.00 2.87
2722 3303 1.929836 GATGCTTCGCTGATTCTCGTT 59.070 47.619 0.00 0.00 0.00 3.85
2778 3359 4.389992 CGCTGAGATGACTGTTTGTGTATT 59.610 41.667 0.00 0.00 0.00 1.89
2779 3360 5.445142 CGCTGAGATGACTGTTTGTGTATTC 60.445 44.000 0.00 0.00 0.00 1.75
2780 3361 5.409520 GCTGAGATGACTGTTTGTGTATTCA 59.590 40.000 0.00 0.00 0.00 2.57
2781 3362 6.401903 GCTGAGATGACTGTTTGTGTATTCAG 60.402 42.308 0.00 0.00 0.00 3.02
2782 3363 5.934043 TGAGATGACTGTTTGTGTATTCAGG 59.066 40.000 0.00 0.00 32.92 3.86
2783 3364 5.869579 AGATGACTGTTTGTGTATTCAGGT 58.130 37.500 0.00 0.00 32.92 4.00
2784 3365 5.702670 AGATGACTGTTTGTGTATTCAGGTG 59.297 40.000 0.00 0.00 32.92 4.00
2785 3366 4.133820 TGACTGTTTGTGTATTCAGGTGG 58.866 43.478 0.00 0.00 32.92 4.61
2786 3367 4.141597 TGACTGTTTGTGTATTCAGGTGGA 60.142 41.667 0.00 0.00 32.92 4.02
2787 3368 4.389374 ACTGTTTGTGTATTCAGGTGGAG 58.611 43.478 0.00 0.00 32.92 3.86
2788 3369 3.750371 TGTTTGTGTATTCAGGTGGAGG 58.250 45.455 0.00 0.00 0.00 4.30
2789 3370 3.081804 GTTTGTGTATTCAGGTGGAGGG 58.918 50.000 0.00 0.00 0.00 4.30
2790 3371 2.335681 TGTGTATTCAGGTGGAGGGA 57.664 50.000 0.00 0.00 0.00 4.20
2791 3372 2.845659 TGTGTATTCAGGTGGAGGGAT 58.154 47.619 0.00 0.00 0.00 3.85
2792 3373 2.771943 TGTGTATTCAGGTGGAGGGATC 59.228 50.000 0.00 0.00 0.00 3.36
2793 3374 2.039418 TGTATTCAGGTGGAGGGATCG 58.961 52.381 0.00 0.00 0.00 3.69
2794 3375 1.048601 TATTCAGGTGGAGGGATCGC 58.951 55.000 0.54 0.54 0.00 4.58
2795 3376 0.692419 ATTCAGGTGGAGGGATCGCT 60.692 55.000 12.81 12.81 0.00 4.93
2796 3377 0.032515 TTCAGGTGGAGGGATCGCTA 60.033 55.000 12.94 0.00 0.00 4.26
2797 3378 0.188587 TCAGGTGGAGGGATCGCTAT 59.811 55.000 12.94 0.00 0.00 2.97
2798 3379 0.605589 CAGGTGGAGGGATCGCTATC 59.394 60.000 12.94 8.75 0.00 2.08
2805 3386 3.715015 GGATCGCTATCCCTCCCC 58.285 66.667 5.96 0.00 45.37 4.81
2806 3387 1.990614 GGATCGCTATCCCTCCCCC 60.991 68.421 5.96 0.00 45.37 5.40
2807 3388 2.283966 ATCGCTATCCCTCCCCCG 60.284 66.667 0.00 0.00 0.00 5.73
2808 3389 3.907027 ATCGCTATCCCTCCCCCGG 62.907 68.421 0.00 0.00 0.00 5.73
2809 3390 4.936081 CGCTATCCCTCCCCCGGT 62.936 72.222 0.00 0.00 0.00 5.28
2810 3391 3.242291 GCTATCCCTCCCCCGGTG 61.242 72.222 0.00 0.00 0.00 4.94
2811 3392 2.612836 CTATCCCTCCCCCGGTGA 59.387 66.667 0.00 0.00 0.00 4.02
2812 3393 1.837499 CTATCCCTCCCCCGGTGAC 60.837 68.421 0.00 0.00 0.00 3.67
2813 3394 2.599139 CTATCCCTCCCCCGGTGACA 62.599 65.000 0.00 0.00 0.00 3.58
2814 3395 2.599139 TATCCCTCCCCCGGTGACAG 62.599 65.000 0.00 0.00 0.00 3.51
2816 3397 2.928396 CCTCCCCCGGTGACAGTT 60.928 66.667 0.00 0.00 0.00 3.16
2817 3398 2.663196 CTCCCCCGGTGACAGTTC 59.337 66.667 0.00 0.00 0.00 3.01
2818 3399 2.122769 TCCCCCGGTGACAGTTCA 60.123 61.111 0.00 0.00 0.00 3.18
2819 3400 1.764571 CTCCCCCGGTGACAGTTCAA 61.765 60.000 0.00 0.00 31.90 2.69
2820 3401 1.149627 CCCCCGGTGACAGTTCAAA 59.850 57.895 0.00 0.00 31.90 2.69
2821 3402 0.466555 CCCCCGGTGACAGTTCAAAA 60.467 55.000 0.00 0.00 31.90 2.44
2822 3403 1.394618 CCCCGGTGACAGTTCAAAAA 58.605 50.000 0.00 0.00 31.90 1.94
2850 3431 8.608185 AAAAATTATGGGGTATTCATGTCTGT 57.392 30.769 0.00 0.00 0.00 3.41
2851 3432 7.823745 AAATTATGGGGTATTCATGTCTGTC 57.176 36.000 0.00 0.00 0.00 3.51
2852 3433 3.864789 ATGGGGTATTCATGTCTGTCC 57.135 47.619 0.00 0.00 0.00 4.02
2853 3434 2.845659 TGGGGTATTCATGTCTGTCCT 58.154 47.619 0.00 0.00 0.00 3.85
2854 3435 4.002256 TGGGGTATTCATGTCTGTCCTA 57.998 45.455 0.00 0.00 0.00 2.94
2855 3436 4.367166 TGGGGTATTCATGTCTGTCCTAA 58.633 43.478 0.00 0.00 0.00 2.69
2856 3437 4.975147 TGGGGTATTCATGTCTGTCCTAAT 59.025 41.667 0.00 0.00 0.00 1.73
2857 3438 6.147473 TGGGGTATTCATGTCTGTCCTAATA 58.853 40.000 0.00 0.00 0.00 0.98
2858 3439 6.792473 TGGGGTATTCATGTCTGTCCTAATAT 59.208 38.462 0.00 0.00 0.00 1.28
2859 3440 7.294720 TGGGGTATTCATGTCTGTCCTAATATT 59.705 37.037 0.00 0.00 0.00 1.28
2860 3441 8.164070 GGGGTATTCATGTCTGTCCTAATATTT 58.836 37.037 0.00 0.00 0.00 1.40
2861 3442 9.003658 GGGTATTCATGTCTGTCCTAATATTTG 57.996 37.037 0.00 0.00 0.00 2.32
2862 3443 9.003658 GGTATTCATGTCTGTCCTAATATTTGG 57.996 37.037 9.42 9.42 0.00 3.28
2863 3444 9.778741 GTATTCATGTCTGTCCTAATATTTGGA 57.221 33.333 13.79 13.79 0.00 3.53
2874 3455 8.764524 GTCCTAATATTTGGACTAGCACTATG 57.235 38.462 30.32 0.00 45.58 2.23
2875 3456 7.819900 GTCCTAATATTTGGACTAGCACTATGG 59.180 40.741 30.32 0.00 45.58 2.74
2876 3457 7.512746 TCCTAATATTTGGACTAGCACTATGGT 59.487 37.037 13.79 0.00 0.00 3.55
2877 3458 8.157476 CCTAATATTTGGACTAGCACTATGGTT 58.843 37.037 10.08 0.00 0.00 3.67
2878 3459 9.561069 CTAATATTTGGACTAGCACTATGGTTT 57.439 33.333 0.00 0.00 0.00 3.27
2879 3460 8.823220 AATATTTGGACTAGCACTATGGTTTT 57.177 30.769 0.00 0.00 0.00 2.43
2880 3461 5.957842 TTTGGACTAGCACTATGGTTTTG 57.042 39.130 0.00 0.00 0.00 2.44
2881 3462 3.950397 TGGACTAGCACTATGGTTTTGG 58.050 45.455 0.00 0.00 0.00 3.28
2882 3463 3.329520 TGGACTAGCACTATGGTTTTGGT 59.670 43.478 0.00 0.00 0.00 3.67
2883 3464 4.202524 TGGACTAGCACTATGGTTTTGGTT 60.203 41.667 0.00 0.00 0.00 3.67
2884 3465 4.156008 GGACTAGCACTATGGTTTTGGTTG 59.844 45.833 0.00 0.00 0.00 3.77
2885 3466 4.980573 ACTAGCACTATGGTTTTGGTTGA 58.019 39.130 0.00 0.00 0.00 3.18
2886 3467 5.381757 ACTAGCACTATGGTTTTGGTTGAA 58.618 37.500 0.00 0.00 0.00 2.69
2887 3468 5.830991 ACTAGCACTATGGTTTTGGTTGAAA 59.169 36.000 0.00 0.00 0.00 2.69
2888 3469 5.606348 AGCACTATGGTTTTGGTTGAAAA 57.394 34.783 0.00 0.00 0.00 2.29
2889 3470 5.983540 AGCACTATGGTTTTGGTTGAAAAA 58.016 33.333 0.00 0.00 35.27 1.94
2906 3487 2.380084 AAAATGCTCATGCCAAGCTG 57.620 45.000 6.46 0.00 40.50 4.24
2907 3488 0.535335 AAATGCTCATGCCAAGCTGG 59.465 50.000 6.46 0.00 40.50 4.85
2908 3489 1.327690 AATGCTCATGCCAAGCTGGG 61.328 55.000 1.30 1.30 40.50 4.45
2926 3507 1.388547 GGCACCAGTGTTCTGAAACA 58.611 50.000 0.00 0.00 43.76 2.83
2927 3508 1.748493 GGCACCAGTGTTCTGAAACAA 59.252 47.619 0.00 0.00 46.56 2.83
2928 3509 2.362077 GGCACCAGTGTTCTGAAACAAT 59.638 45.455 0.00 0.00 46.56 2.71
2929 3510 3.550842 GGCACCAGTGTTCTGAAACAATC 60.551 47.826 0.00 0.00 46.56 2.67
2930 3511 3.849645 GCACCAGTGTTCTGAAACAATCG 60.850 47.826 0.00 0.00 46.56 3.34
2931 3512 3.559655 CACCAGTGTTCTGAAACAATCGA 59.440 43.478 0.00 0.00 46.56 3.59
2932 3513 3.809832 ACCAGTGTTCTGAAACAATCGAG 59.190 43.478 0.00 0.00 46.56 4.04
2933 3514 3.364366 CCAGTGTTCTGAAACAATCGAGC 60.364 47.826 0.00 0.00 46.56 5.03
2934 3515 3.248363 CAGTGTTCTGAAACAATCGAGCA 59.752 43.478 0.00 0.00 46.56 4.26
2935 3516 3.496130 AGTGTTCTGAAACAATCGAGCAG 59.504 43.478 0.00 0.00 46.56 4.24
2936 3517 2.807967 TGTTCTGAAACAATCGAGCAGG 59.192 45.455 0.00 0.00 42.34 4.85
2937 3518 1.442769 TCTGAAACAATCGAGCAGGC 58.557 50.000 0.00 0.00 0.00 4.85
2938 3519 1.159285 CTGAAACAATCGAGCAGGCA 58.841 50.000 0.00 0.00 0.00 4.75
2939 3520 1.129998 CTGAAACAATCGAGCAGGCAG 59.870 52.381 0.00 0.00 0.00 4.85
2940 3521 1.270785 TGAAACAATCGAGCAGGCAGA 60.271 47.619 0.00 0.00 0.00 4.26
2941 3522 1.396301 GAAACAATCGAGCAGGCAGAG 59.604 52.381 0.00 0.00 0.00 3.35
2942 3523 0.610174 AACAATCGAGCAGGCAGAGA 59.390 50.000 0.00 0.00 0.00 3.10
2943 3524 0.829333 ACAATCGAGCAGGCAGAGAT 59.171 50.000 0.00 0.00 0.00 2.75
2944 3525 1.209019 ACAATCGAGCAGGCAGAGATT 59.791 47.619 0.00 0.00 32.43 2.40
2945 3526 2.286872 CAATCGAGCAGGCAGAGATTT 58.713 47.619 0.00 0.00 30.10 2.17
2946 3527 1.950828 ATCGAGCAGGCAGAGATTTG 58.049 50.000 0.00 0.00 0.00 2.32
2947 3528 0.610174 TCGAGCAGGCAGAGATTTGT 59.390 50.000 0.00 0.00 0.00 2.83
2948 3529 1.824852 TCGAGCAGGCAGAGATTTGTA 59.175 47.619 0.00 0.00 0.00 2.41
2949 3530 1.929836 CGAGCAGGCAGAGATTTGTAC 59.070 52.381 0.00 0.00 0.00 2.90
2950 3531 1.929836 GAGCAGGCAGAGATTTGTACG 59.070 52.381 0.00 0.00 0.00 3.67
2951 3532 1.276421 AGCAGGCAGAGATTTGTACGT 59.724 47.619 0.00 0.00 0.00 3.57
2952 3533 2.076863 GCAGGCAGAGATTTGTACGTT 58.923 47.619 0.00 0.00 0.00 3.99
2953 3534 2.159653 GCAGGCAGAGATTTGTACGTTG 60.160 50.000 0.00 0.00 0.00 4.10
2954 3535 2.416547 CAGGCAGAGATTTGTACGTTGG 59.583 50.000 0.00 0.00 0.00 3.77
2955 3536 2.038557 AGGCAGAGATTTGTACGTTGGT 59.961 45.455 0.00 0.00 0.00 3.67
2956 3537 2.159627 GGCAGAGATTTGTACGTTGGTG 59.840 50.000 0.00 0.00 0.00 4.17
2957 3538 2.412847 GCAGAGATTTGTACGTTGGTGC 60.413 50.000 0.00 0.00 0.00 5.01
2958 3539 3.067106 CAGAGATTTGTACGTTGGTGCT 58.933 45.455 0.00 0.00 0.00 4.40
2959 3540 4.242475 CAGAGATTTGTACGTTGGTGCTA 58.758 43.478 0.00 0.00 0.00 3.49
2960 3541 4.870426 CAGAGATTTGTACGTTGGTGCTAT 59.130 41.667 0.00 0.00 0.00 2.97
2961 3542 5.005779 CAGAGATTTGTACGTTGGTGCTATC 59.994 44.000 0.00 0.00 0.00 2.08
2962 3543 5.086104 AGATTTGTACGTTGGTGCTATCT 57.914 39.130 0.00 0.00 31.48 1.98
2963 3544 4.870426 AGATTTGTACGTTGGTGCTATCTG 59.130 41.667 0.00 0.00 33.38 2.90
2964 3545 3.671008 TTGTACGTTGGTGCTATCTGT 57.329 42.857 0.00 0.00 0.00 3.41
2965 3546 3.671008 TGTACGTTGGTGCTATCTGTT 57.329 42.857 0.00 0.00 0.00 3.16
2966 3547 4.787260 TGTACGTTGGTGCTATCTGTTA 57.213 40.909 0.00 0.00 0.00 2.41
2967 3548 5.333299 TGTACGTTGGTGCTATCTGTTAT 57.667 39.130 0.00 0.00 0.00 1.89
2968 3549 5.345702 TGTACGTTGGTGCTATCTGTTATC 58.654 41.667 0.00 0.00 0.00 1.75
2969 3550 3.444916 ACGTTGGTGCTATCTGTTATCG 58.555 45.455 0.00 0.00 0.00 2.92
2970 3551 2.794910 CGTTGGTGCTATCTGTTATCGG 59.205 50.000 0.00 0.00 0.00 4.18
2971 3552 3.490249 CGTTGGTGCTATCTGTTATCGGA 60.490 47.826 0.00 0.00 0.00 4.55
2972 3553 4.051922 GTTGGTGCTATCTGTTATCGGAG 58.948 47.826 0.00 0.00 32.02 4.63
2973 3554 3.562182 TGGTGCTATCTGTTATCGGAGA 58.438 45.455 0.00 0.00 45.75 3.71
2974 3555 4.152647 TGGTGCTATCTGTTATCGGAGAT 58.847 43.478 0.00 0.00 45.12 2.75
2975 3556 5.321927 TGGTGCTATCTGTTATCGGAGATA 58.678 41.667 0.00 0.00 45.12 1.98
2976 3557 5.183331 TGGTGCTATCTGTTATCGGAGATAC 59.817 44.000 0.00 0.00 45.12 2.24
2977 3558 5.393243 GGTGCTATCTGTTATCGGAGATACC 60.393 48.000 0.00 0.00 45.12 2.73
2990 3571 3.851098 GGAGATACCGGCATAGATTCAC 58.149 50.000 0.00 0.00 0.00 3.18
2991 3572 3.368531 GGAGATACCGGCATAGATTCACC 60.369 52.174 0.00 0.00 0.00 4.02
2992 3573 3.511477 AGATACCGGCATAGATTCACCT 58.489 45.455 0.00 0.00 0.00 4.00
2993 3574 3.259374 AGATACCGGCATAGATTCACCTG 59.741 47.826 0.00 0.00 0.00 4.00
2994 3575 0.179045 ACCGGCATAGATTCACCTGC 60.179 55.000 0.00 0.00 0.00 4.85
2995 3576 0.179048 CCGGCATAGATTCACCTGCA 60.179 55.000 0.00 0.00 36.34 4.41
2996 3577 0.940126 CGGCATAGATTCACCTGCAC 59.060 55.000 7.22 0.00 36.34 4.57
2997 3578 0.940126 GGCATAGATTCACCTGCACG 59.060 55.000 7.22 0.00 36.34 5.34
2998 3579 0.305922 GCATAGATTCACCTGCACGC 59.694 55.000 0.00 0.00 34.77 5.34
2999 3580 0.940126 CATAGATTCACCTGCACGCC 59.060 55.000 0.00 0.00 0.00 5.68
3000 3581 0.179045 ATAGATTCACCTGCACGCCC 60.179 55.000 0.00 0.00 0.00 6.13
3001 3582 1.264749 TAGATTCACCTGCACGCCCT 61.265 55.000 0.00 0.00 0.00 5.19
3002 3583 1.220749 GATTCACCTGCACGCCCTA 59.779 57.895 0.00 0.00 0.00 3.53
3003 3584 1.078426 ATTCACCTGCACGCCCTAC 60.078 57.895 0.00 0.00 0.00 3.18
3004 3585 1.553690 ATTCACCTGCACGCCCTACT 61.554 55.000 0.00 0.00 0.00 2.57
3005 3586 2.434884 CACCTGCACGCCCTACTG 60.435 66.667 0.00 0.00 0.00 2.74
3006 3587 2.923035 ACCTGCACGCCCTACTGT 60.923 61.111 0.00 0.00 0.00 3.55
3007 3588 2.347490 CCTGCACGCCCTACTGTT 59.653 61.111 0.00 0.00 0.00 3.16
3008 3589 1.741770 CCTGCACGCCCTACTGTTC 60.742 63.158 0.00 0.00 0.00 3.18
3009 3590 1.005037 CTGCACGCCCTACTGTTCA 60.005 57.895 0.00 0.00 0.00 3.18
3010 3591 1.005037 TGCACGCCCTACTGTTCAG 60.005 57.895 0.00 0.00 0.00 3.02
3011 3592 1.292223 GCACGCCCTACTGTTCAGA 59.708 57.895 6.83 0.00 0.00 3.27
3012 3593 0.108138 GCACGCCCTACTGTTCAGAT 60.108 55.000 6.83 0.00 0.00 2.90
3013 3594 1.136305 GCACGCCCTACTGTTCAGATA 59.864 52.381 6.83 0.00 0.00 1.98
3014 3595 2.224066 GCACGCCCTACTGTTCAGATAT 60.224 50.000 6.83 0.00 0.00 1.63
3015 3596 3.005472 GCACGCCCTACTGTTCAGATATA 59.995 47.826 6.83 0.00 0.00 0.86
3016 3597 4.500887 GCACGCCCTACTGTTCAGATATAA 60.501 45.833 6.83 0.00 0.00 0.98
3017 3598 4.982916 CACGCCCTACTGTTCAGATATAAC 59.017 45.833 6.83 0.00 0.00 1.89
3018 3599 4.894114 ACGCCCTACTGTTCAGATATAACT 59.106 41.667 6.83 0.00 0.00 2.24
3019 3600 5.363005 ACGCCCTACTGTTCAGATATAACTT 59.637 40.000 6.83 0.00 0.00 2.66
3020 3601 5.921408 CGCCCTACTGTTCAGATATAACTTC 59.079 44.000 6.83 0.00 0.00 3.01
3021 3602 6.461092 CGCCCTACTGTTCAGATATAACTTCA 60.461 42.308 6.83 0.00 0.00 3.02
3022 3603 6.926272 GCCCTACTGTTCAGATATAACTTCAG 59.074 42.308 6.83 0.00 0.00 3.02
3023 3604 7.201920 GCCCTACTGTTCAGATATAACTTCAGA 60.202 40.741 6.83 0.00 0.00 3.27
3024 3605 8.138712 CCCTACTGTTCAGATATAACTTCAGAC 58.861 40.741 6.83 0.00 0.00 3.51
3025 3606 8.908903 CCTACTGTTCAGATATAACTTCAGACT 58.091 37.037 6.83 0.00 0.00 3.24
3088 3669 8.880244 AGGAGTATATATGGCTAACAAATCACA 58.120 33.333 0.00 0.00 0.00 3.58
3089 3670 9.155975 GGAGTATATATGGCTAACAAATCACAG 57.844 37.037 0.00 0.00 0.00 3.66
3090 3671 9.712305 GAGTATATATGGCTAACAAATCACAGT 57.288 33.333 0.00 0.00 0.00 3.55
3094 3675 5.991328 ATGGCTAACAAATCACAGTATCG 57.009 39.130 0.00 0.00 0.00 2.92
3095 3676 4.188462 TGGCTAACAAATCACAGTATCGG 58.812 43.478 0.00 0.00 0.00 4.18
3096 3677 4.189231 GGCTAACAAATCACAGTATCGGT 58.811 43.478 0.00 0.00 0.00 4.69
3097 3678 4.270325 GGCTAACAAATCACAGTATCGGTC 59.730 45.833 0.00 0.00 0.00 4.79
3098 3679 5.109903 GCTAACAAATCACAGTATCGGTCT 58.890 41.667 0.00 0.00 0.00 3.85
3099 3680 5.232414 GCTAACAAATCACAGTATCGGTCTC 59.768 44.000 0.00 0.00 0.00 3.36
3100 3681 4.124851 ACAAATCACAGTATCGGTCTCC 57.875 45.455 0.00 0.00 0.00 3.71
3101 3682 3.513912 ACAAATCACAGTATCGGTCTCCA 59.486 43.478 0.00 0.00 0.00 3.86
3102 3683 4.162320 ACAAATCACAGTATCGGTCTCCAT 59.838 41.667 0.00 0.00 0.00 3.41
3103 3684 4.327982 AATCACAGTATCGGTCTCCATG 57.672 45.455 0.00 0.00 0.00 3.66
3104 3685 2.735151 TCACAGTATCGGTCTCCATGT 58.265 47.619 0.00 0.00 0.00 3.21
3105 3686 2.688446 TCACAGTATCGGTCTCCATGTC 59.312 50.000 0.00 0.00 0.00 3.06
3106 3687 2.427095 CACAGTATCGGTCTCCATGTCA 59.573 50.000 0.00 0.00 0.00 3.58
3107 3688 3.068732 CACAGTATCGGTCTCCATGTCAT 59.931 47.826 0.00 0.00 0.00 3.06
3108 3689 3.068732 ACAGTATCGGTCTCCATGTCATG 59.931 47.826 5.79 5.79 0.00 3.07
3109 3690 3.068732 CAGTATCGGTCTCCATGTCATGT 59.931 47.826 11.84 0.00 0.00 3.21
3110 3691 3.706594 AGTATCGGTCTCCATGTCATGTT 59.293 43.478 11.84 0.00 0.00 2.71
3111 3692 4.893524 AGTATCGGTCTCCATGTCATGTTA 59.106 41.667 11.84 0.00 0.00 2.41
3112 3693 4.753516 ATCGGTCTCCATGTCATGTTAA 57.246 40.909 11.84 0.00 0.00 2.01
3113 3694 4.123497 TCGGTCTCCATGTCATGTTAAG 57.877 45.455 11.84 6.45 0.00 1.85
3114 3695 3.767131 TCGGTCTCCATGTCATGTTAAGA 59.233 43.478 11.84 8.48 0.00 2.10
3115 3696 3.865745 CGGTCTCCATGTCATGTTAAGAC 59.134 47.826 21.06 21.06 34.42 3.01
3116 3697 3.865745 GGTCTCCATGTCATGTTAAGACG 59.134 47.826 21.71 5.76 38.83 4.18
3117 3698 3.865745 GTCTCCATGTCATGTTAAGACGG 59.134 47.826 17.48 1.40 38.83 4.79
3118 3699 3.767131 TCTCCATGTCATGTTAAGACGGA 59.233 43.478 11.84 0.00 38.83 4.69
3119 3700 4.115516 CTCCATGTCATGTTAAGACGGAG 58.884 47.826 11.84 4.87 37.32 4.63
3132 3713 1.004918 ACGGAGTGGTTGCTACTGC 60.005 57.895 0.00 0.00 42.51 4.40
3133 3714 1.754380 ACGGAGTGGTTGCTACTGCA 61.754 55.000 0.00 0.00 44.85 4.41
3143 3724 3.540211 GCTACTGCAAGCTTCTCCA 57.460 52.632 0.00 0.00 39.50 3.86
3144 3725 1.367659 GCTACTGCAAGCTTCTCCAG 58.632 55.000 13.81 13.81 39.50 3.86
3145 3726 2.604579 GCTACTGCAAGCTTCTCCAGC 61.605 57.143 14.84 8.15 43.51 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.038343 AACAACATCACGGCCATTGC 60.038 50.000 2.24 0.00 0.00 3.56
16 17 1.974543 CCCATGGAAGGGCAACAAC 59.025 57.895 15.22 0.00 43.10 3.32
26 27 4.463050 AAGACAAGTTTACCCCATGGAA 57.537 40.909 15.22 0.00 34.81 3.53
27 28 5.586155 TTAAGACAAGTTTACCCCATGGA 57.414 39.130 15.22 0.00 34.81 3.41
60 61 5.874093 ACAAGACATTCAAGAGATTGGACT 58.126 37.500 0.00 0.00 31.14 3.85
66 67 7.338800 ACAACAAACAAGACATTCAAGAGAT 57.661 32.000 0.00 0.00 0.00 2.75
74 75 6.431198 AGTTCGTACAACAAACAAGACATT 57.569 33.333 9.74 0.00 0.00 2.71
77 78 8.831000 AAATTAGTTCGTACAACAAACAAGAC 57.169 30.769 9.74 0.00 0.00 3.01
108 109 3.091545 TCGGGTCGTACAAAGGAAGTAT 58.908 45.455 0.00 0.00 0.00 2.12
109 110 2.513753 TCGGGTCGTACAAAGGAAGTA 58.486 47.619 0.00 0.00 0.00 2.24
110 111 1.331214 TCGGGTCGTACAAAGGAAGT 58.669 50.000 0.00 0.00 0.00 3.01
111 112 2.443887 TTCGGGTCGTACAAAGGAAG 57.556 50.000 0.00 0.00 0.00 3.46
122 124 1.588404 CGACTCAATGATTTCGGGTCG 59.412 52.381 3.95 3.95 38.86 4.79
123 125 1.933853 CCGACTCAATGATTTCGGGTC 59.066 52.381 19.89 6.74 45.95 4.46
135 137 4.384940 TCAATTTGACATCACCGACTCAA 58.615 39.130 0.00 0.00 0.00 3.02
141 143 7.076842 AGAGTAATTCAATTTGACATCACCG 57.923 36.000 0.00 0.00 0.00 4.94
187 189 9.533253 CACTACCTCAAAAGAAAATCAACAATT 57.467 29.630 0.00 0.00 0.00 2.32
188 190 8.695456 ACACTACCTCAAAAGAAAATCAACAAT 58.305 29.630 0.00 0.00 0.00 2.71
200 202 8.783093 TCAATTTGACATACACTACCTCAAAAG 58.217 33.333 0.00 0.00 35.17 2.27
201 203 8.684386 TCAATTTGACATACACTACCTCAAAA 57.316 30.769 0.00 0.00 35.17 2.44
206 208 9.959721 AGTAATTCAATTTGACATACACTACCT 57.040 29.630 16.89 0.87 0.00 3.08
256 258 9.533253 CACTACCTCAAAAGAAAATCAACAATT 57.467 29.630 0.00 0.00 0.00 2.32
257 259 8.695456 ACACTACCTCAAAAGAAAATCAACAAT 58.305 29.630 0.00 0.00 0.00 2.71
258 260 8.062065 ACACTACCTCAAAAGAAAATCAACAA 57.938 30.769 0.00 0.00 0.00 2.83
259 261 7.639113 ACACTACCTCAAAAGAAAATCAACA 57.361 32.000 0.00 0.00 0.00 3.33
264 266 9.476202 GCAAATAACACTACCTCAAAAGAAAAT 57.524 29.630 0.00 0.00 0.00 1.82
265 267 7.923878 GGCAAATAACACTACCTCAAAAGAAAA 59.076 33.333 0.00 0.00 0.00 2.29
266 268 7.430441 GGCAAATAACACTACCTCAAAAGAAA 58.570 34.615 0.00 0.00 0.00 2.52
267 269 6.293735 CGGCAAATAACACTACCTCAAAAGAA 60.294 38.462 0.00 0.00 0.00 2.52
268 270 5.180492 CGGCAAATAACACTACCTCAAAAGA 59.820 40.000 0.00 0.00 0.00 2.52
269 271 5.048991 ACGGCAAATAACACTACCTCAAAAG 60.049 40.000 0.00 0.00 0.00 2.27
270 272 4.822896 ACGGCAAATAACACTACCTCAAAA 59.177 37.500 0.00 0.00 0.00 2.44
271 273 4.391155 ACGGCAAATAACACTACCTCAAA 58.609 39.130 0.00 0.00 0.00 2.69
272 274 4.010667 ACGGCAAATAACACTACCTCAA 57.989 40.909 0.00 0.00 0.00 3.02
273 275 3.688694 ACGGCAAATAACACTACCTCA 57.311 42.857 0.00 0.00 0.00 3.86
283 285 5.470777 AGCGGCTATAAATAACGGCAAATAA 59.529 36.000 0.00 0.00 30.17 1.40
318 320 2.159142 GCCAGAATTCATCAAAGCCAGG 60.159 50.000 8.44 0.00 0.00 4.45
319 321 2.758979 AGCCAGAATTCATCAAAGCCAG 59.241 45.455 8.44 0.00 0.00 4.85
320 322 2.811410 AGCCAGAATTCATCAAAGCCA 58.189 42.857 8.44 0.00 0.00 4.75
321 323 3.881937 AAGCCAGAATTCATCAAAGCC 57.118 42.857 8.44 0.00 0.00 4.35
326 328 5.188434 CAGAGGTAAAGCCAGAATTCATCA 58.812 41.667 8.44 0.00 40.61 3.07
329 331 4.640771 ACAGAGGTAAAGCCAGAATTCA 57.359 40.909 8.44 0.00 40.61 2.57
330 332 4.379918 GCAACAGAGGTAAAGCCAGAATTC 60.380 45.833 0.00 0.00 40.61 2.17
341 343 2.598787 CCGGGGGCAACAGAGGTAA 61.599 63.158 0.00 0.00 39.74 2.85
342 344 3.006728 CCGGGGGCAACAGAGGTA 61.007 66.667 0.00 0.00 39.74 3.08
354 356 1.291906 GAACAATGGTTTGCCGGGG 59.708 57.895 2.18 0.00 37.36 5.73
355 357 0.390860 TTGAACAATGGTTTGCCGGG 59.609 50.000 2.18 0.00 37.36 5.73
356 358 1.202463 TGTTGAACAATGGTTTGCCGG 60.202 47.619 0.00 0.00 37.36 6.13
357 359 2.215907 TGTTGAACAATGGTTTGCCG 57.784 45.000 0.00 0.00 37.36 5.69
358 360 3.876320 ACAATGTTGAACAATGGTTTGCC 59.124 39.130 16.79 0.00 37.36 4.52
359 361 4.332268 ACACAATGTTGAACAATGGTTTGC 59.668 37.500 16.79 0.00 37.36 3.68
385 387 6.393897 TCAGGGTCCTCTCTTTATGGATTAT 58.606 40.000 0.00 0.00 32.03 1.28
386 388 5.788430 TCAGGGTCCTCTCTTTATGGATTA 58.212 41.667 0.00 0.00 32.03 1.75
426 428 2.915659 TGACGCGCCTATAGGGGG 60.916 66.667 30.86 23.58 46.98 5.40
433 447 2.202743 GCATGAGTGACGCGCCTA 60.203 61.111 5.73 0.00 0.00 3.93
437 451 1.059838 CACATGCATGAGTGACGCG 59.940 57.895 32.75 3.53 37.97 6.01
484 498 4.083003 TGTTTATCTCACCACGAAAATGCC 60.083 41.667 0.00 0.00 0.00 4.40
485 499 5.041951 TGTTTATCTCACCACGAAAATGC 57.958 39.130 0.00 0.00 0.00 3.56
486 500 6.029607 CCATGTTTATCTCACCACGAAAATG 58.970 40.000 0.00 0.00 0.00 2.32
487 501 5.393027 GCCATGTTTATCTCACCACGAAAAT 60.393 40.000 0.00 0.00 0.00 1.82
614 628 1.226104 TAGGTAGAGTGGGGGCTGGA 61.226 60.000 0.00 0.00 0.00 3.86
649 663 6.044754 TCTGGTTGGAGCATCTGGATATTATT 59.955 38.462 0.00 0.00 33.73 1.40
650 664 5.549228 TCTGGTTGGAGCATCTGGATATTAT 59.451 40.000 0.00 0.00 33.73 1.28
651 665 4.907269 TCTGGTTGGAGCATCTGGATATTA 59.093 41.667 0.00 0.00 33.73 0.98
739 753 1.203523 CTCCGTTCAGACTTCAGAGGG 59.796 57.143 0.00 0.00 0.00 4.30
747 761 1.270358 GCCTTTGTCTCCGTTCAGACT 60.270 52.381 7.65 0.00 43.00 3.24
756 770 2.851195 TCTTTCTGTGCCTTTGTCTCC 58.149 47.619 0.00 0.00 0.00 3.71
778 792 4.179579 GGCTTAGCGGCGCTTTGG 62.180 66.667 40.77 27.76 40.44 3.28
779 793 4.179579 GGGCTTAGCGGCGCTTTG 62.180 66.667 40.77 30.35 40.44 2.77
808 822 3.883549 GGGGGCTGATCCAGGAGC 61.884 72.222 0.00 0.00 36.21 4.70
809 823 2.040043 AGGGGGCTGATCCAGGAG 60.040 66.667 0.00 0.00 36.21 3.69
810 824 2.040464 GAGGGGGCTGATCCAGGA 60.040 66.667 0.00 0.00 36.21 3.86
811 825 3.174265 GGAGGGGGCTGATCCAGG 61.174 72.222 0.00 0.00 36.21 4.45
812 826 3.174265 GGGAGGGGGCTGATCCAG 61.174 72.222 0.00 0.00 34.62 3.86
813 827 4.037413 TGGGAGGGGGCTGATCCA 62.037 66.667 0.00 0.00 34.62 3.41
876 900 1.897473 TGTGGATCAGATCATGGGGT 58.103 50.000 12.66 0.00 0.00 4.95
893 921 0.538287 GTGGCTTCCAGGAGCTTTGT 60.538 55.000 9.85 0.00 42.32 2.83
905 1442 4.643387 AGGTGGCGTGGTGGCTTC 62.643 66.667 0.00 0.00 45.14 3.86
995 1532 1.303309 GAGTTCTTGGATCATGGCGG 58.697 55.000 0.00 0.00 0.00 6.13
1632 2175 3.259314 AGCTGCCCCATGGTGTCA 61.259 61.111 11.73 4.38 0.00 3.58
1830 2397 2.567169 TGAAGATGGTGACGGTGAAGAT 59.433 45.455 0.00 0.00 0.00 2.40
1842 2409 2.125512 GCCGCGAGTGAAGATGGT 60.126 61.111 8.23 0.00 0.00 3.55
2025 2592 2.036256 GGTGGCTGCTGGTCCATT 59.964 61.111 0.00 0.00 34.47 3.16
2088 2655 4.256090 GCCATCATTGACGCCGGC 62.256 66.667 19.07 19.07 0.00 6.13
2345 2915 2.563179 CAGCACCACCAGTTACTACTCT 59.437 50.000 0.00 0.00 30.26 3.24
2346 2916 2.353803 CCAGCACCACCAGTTACTACTC 60.354 54.545 0.00 0.00 30.26 2.59
2389 2959 1.059584 TTTGCCAGTGACCCTCCTGA 61.060 55.000 0.00 0.00 0.00 3.86
2399 2969 1.481772 CCCCACCATAATTTGCCAGTG 59.518 52.381 0.00 0.00 0.00 3.66
2425 2995 5.230097 CGAAATCGATCGACATCTTCTTGAA 59.770 40.000 22.06 0.00 45.48 2.69
2499 3077 1.205893 AGTACTAGACCAGCTTGCAGC 59.794 52.381 0.00 0.47 42.84 5.25
2500 3078 3.601443 AAGTACTAGACCAGCTTGCAG 57.399 47.619 0.00 0.00 0.00 4.41
2512 3090 8.870879 GGTAGTTTGCAGACAAATAAGTACTAG 58.129 37.037 10.36 0.00 46.93 2.57
2561 3142 4.109050 ACCTGTGTACGTTTGCATTTTTG 58.891 39.130 0.00 0.00 0.00 2.44
2562 3143 4.379339 ACCTGTGTACGTTTGCATTTTT 57.621 36.364 0.00 0.00 0.00 1.94
2563 3144 4.379339 AACCTGTGTACGTTTGCATTTT 57.621 36.364 0.00 0.00 0.00 1.82
2564 3145 4.109050 CAAACCTGTGTACGTTTGCATTT 58.891 39.130 10.00 0.00 41.53 2.32
2565 3146 3.490078 CCAAACCTGTGTACGTTTGCATT 60.490 43.478 14.88 0.00 44.79 3.56
2566 3147 2.034053 CCAAACCTGTGTACGTTTGCAT 59.966 45.455 14.88 0.00 44.79 3.96
2573 3154 0.604511 GACCCCCAAACCTGTGTACG 60.605 60.000 0.00 0.00 0.00 3.67
2596 3177 0.969894 AGGAGTACTTGCTTGCGAGT 59.030 50.000 18.15 18.15 0.00 4.18
2600 3181 1.238439 TTGCAGGAGTACTTGCTTGC 58.762 50.000 18.00 14.33 46.84 4.01
2778 3359 0.188587 ATAGCGATCCCTCCACCTGA 59.811 55.000 0.00 0.00 0.00 3.86
2779 3360 0.605589 GATAGCGATCCCTCCACCTG 59.394 60.000 0.00 0.00 0.00 4.00
2780 3361 0.543174 GGATAGCGATCCCTCCACCT 60.543 60.000 14.55 0.00 45.48 4.00
2781 3362 1.976112 GGATAGCGATCCCTCCACC 59.024 63.158 14.55 0.00 45.48 4.61
2789 3370 2.352032 CGGGGGAGGGATAGCGATC 61.352 68.421 0.00 0.00 0.00 3.69
2790 3371 2.283966 CGGGGGAGGGATAGCGAT 60.284 66.667 0.00 0.00 0.00 4.58
2791 3372 4.615795 CCGGGGGAGGGATAGCGA 62.616 72.222 0.00 0.00 0.00 4.93
2792 3373 4.936081 ACCGGGGGAGGGATAGCG 62.936 72.222 6.32 0.00 35.02 4.26
2793 3374 3.242291 CACCGGGGGAGGGATAGC 61.242 72.222 6.32 0.00 35.02 2.97
2794 3375 1.837499 GTCACCGGGGGAGGGATAG 60.837 68.421 2.42 0.00 35.02 2.08
2795 3376 2.284493 GTCACCGGGGGAGGGATA 59.716 66.667 2.42 0.00 35.02 2.59
2796 3377 4.019513 TGTCACCGGGGGAGGGAT 62.020 66.667 2.42 0.00 35.02 3.85
2797 3378 4.715130 CTGTCACCGGGGGAGGGA 62.715 72.222 2.42 0.00 35.02 4.20
2799 3380 2.928396 AACTGTCACCGGGGGAGG 60.928 66.667 2.42 0.00 37.30 4.30
2800 3381 1.764571 TTGAACTGTCACCGGGGGAG 61.765 60.000 2.42 2.37 31.90 4.30
2801 3382 1.346479 TTTGAACTGTCACCGGGGGA 61.346 55.000 2.42 0.00 31.90 4.81
2802 3383 0.466555 TTTTGAACTGTCACCGGGGG 60.467 55.000 2.42 0.00 31.90 5.40
2803 3384 1.394618 TTTTTGAACTGTCACCGGGG 58.605 50.000 6.32 0.00 31.90 5.73
2825 3406 8.608185 ACAGACATGAATACCCCATAATTTTT 57.392 30.769 0.00 0.00 0.00 1.94
2826 3407 7.287696 GGACAGACATGAATACCCCATAATTTT 59.712 37.037 0.00 0.00 0.00 1.82
2827 3408 6.777580 GGACAGACATGAATACCCCATAATTT 59.222 38.462 0.00 0.00 0.00 1.82
2828 3409 6.103205 AGGACAGACATGAATACCCCATAATT 59.897 38.462 0.00 0.00 0.00 1.40
2829 3410 5.612688 AGGACAGACATGAATACCCCATAAT 59.387 40.000 0.00 0.00 0.00 1.28
2830 3411 4.975147 AGGACAGACATGAATACCCCATAA 59.025 41.667 0.00 0.00 0.00 1.90
2831 3412 4.566837 AGGACAGACATGAATACCCCATA 58.433 43.478 0.00 0.00 0.00 2.74
2832 3413 3.397527 AGGACAGACATGAATACCCCAT 58.602 45.455 0.00 0.00 0.00 4.00
2833 3414 2.845659 AGGACAGACATGAATACCCCA 58.154 47.619 0.00 0.00 0.00 4.96
2834 3415 5.568620 ATTAGGACAGACATGAATACCCC 57.431 43.478 0.00 0.00 0.00 4.95
2835 3416 9.003658 CAAATATTAGGACAGACATGAATACCC 57.996 37.037 0.00 0.00 0.00 3.69
2836 3417 9.003658 CCAAATATTAGGACAGACATGAATACC 57.996 37.037 0.00 0.00 0.00 2.73
2837 3418 9.778741 TCCAAATATTAGGACAGACATGAATAC 57.221 33.333 0.00 0.00 0.00 1.89
2850 3431 7.512746 ACCATAGTGCTAGTCCAAATATTAGGA 59.487 37.037 0.00 0.00 0.00 2.94
2851 3432 7.680730 ACCATAGTGCTAGTCCAAATATTAGG 58.319 38.462 0.00 0.00 0.00 2.69
2852 3433 9.561069 AAACCATAGTGCTAGTCCAAATATTAG 57.439 33.333 0.00 0.00 0.00 1.73
2853 3434 9.914834 AAAACCATAGTGCTAGTCCAAATATTA 57.085 29.630 0.00 0.00 0.00 0.98
2854 3435 8.686334 CAAAACCATAGTGCTAGTCCAAATATT 58.314 33.333 0.00 0.00 0.00 1.28
2855 3436 7.285401 CCAAAACCATAGTGCTAGTCCAAATAT 59.715 37.037 0.00 0.00 0.00 1.28
2856 3437 6.601613 CCAAAACCATAGTGCTAGTCCAAATA 59.398 38.462 0.00 0.00 0.00 1.40
2857 3438 5.418840 CCAAAACCATAGTGCTAGTCCAAAT 59.581 40.000 0.00 0.00 0.00 2.32
2858 3439 4.764823 CCAAAACCATAGTGCTAGTCCAAA 59.235 41.667 0.00 0.00 0.00 3.28
2859 3440 4.202524 ACCAAAACCATAGTGCTAGTCCAA 60.203 41.667 0.00 0.00 0.00 3.53
2860 3441 3.329520 ACCAAAACCATAGTGCTAGTCCA 59.670 43.478 0.00 0.00 0.00 4.02
2861 3442 3.951663 ACCAAAACCATAGTGCTAGTCC 58.048 45.455 0.00 0.00 0.00 3.85
2862 3443 5.001232 TCAACCAAAACCATAGTGCTAGTC 58.999 41.667 0.00 0.00 0.00 2.59
2863 3444 4.980573 TCAACCAAAACCATAGTGCTAGT 58.019 39.130 0.00 0.00 0.00 2.57
2864 3445 5.957842 TTCAACCAAAACCATAGTGCTAG 57.042 39.130 0.00 0.00 0.00 3.42
2865 3446 6.716934 TTTTCAACCAAAACCATAGTGCTA 57.283 33.333 0.00 0.00 0.00 3.49
2866 3447 5.606348 TTTTCAACCAAAACCATAGTGCT 57.394 34.783 0.00 0.00 0.00 4.40
2886 3467 2.614481 CCAGCTTGGCATGAGCATTTTT 60.614 45.455 13.28 0.00 44.61 1.94
2887 3468 1.066430 CCAGCTTGGCATGAGCATTTT 60.066 47.619 13.28 0.00 44.61 1.82
2888 3469 0.535335 CCAGCTTGGCATGAGCATTT 59.465 50.000 13.28 0.00 44.61 2.32
2889 3470 1.327690 CCCAGCTTGGCATGAGCATT 61.328 55.000 13.28 0.00 44.61 3.56
2890 3471 1.756950 CCCAGCTTGGCATGAGCAT 60.757 57.895 13.28 0.00 44.61 3.79
2891 3472 2.361992 CCCAGCTTGGCATGAGCA 60.362 61.111 13.28 0.00 44.61 4.26
2905 3486 0.257328 TTTCAGAACACTGGTGCCCA 59.743 50.000 0.17 0.00 33.04 5.36
2906 3487 0.668535 GTTTCAGAACACTGGTGCCC 59.331 55.000 0.17 0.00 35.79 5.36
2907 3488 1.388547 TGTTTCAGAACACTGGTGCC 58.611 50.000 0.17 0.00 40.71 5.01
2908 3489 3.632189 GATTGTTTCAGAACACTGGTGC 58.368 45.455 0.17 0.00 45.01 5.01
2909 3490 3.559655 TCGATTGTTTCAGAACACTGGTG 59.440 43.478 0.00 0.00 45.01 4.17
2910 3491 3.804036 TCGATTGTTTCAGAACACTGGT 58.196 40.909 0.00 0.00 45.01 4.00
2911 3492 3.364366 GCTCGATTGTTTCAGAACACTGG 60.364 47.826 0.00 0.00 45.01 4.00
2912 3493 3.248363 TGCTCGATTGTTTCAGAACACTG 59.752 43.478 0.00 0.00 45.01 3.66
2913 3494 3.466836 TGCTCGATTGTTTCAGAACACT 58.533 40.909 0.00 0.00 45.01 3.55
2914 3495 3.364366 CCTGCTCGATTGTTTCAGAACAC 60.364 47.826 0.00 0.00 45.01 3.32
2915 3496 2.807967 CCTGCTCGATTGTTTCAGAACA 59.192 45.455 0.00 0.00 43.73 3.18
2916 3497 2.413371 GCCTGCTCGATTGTTTCAGAAC 60.413 50.000 0.00 0.00 36.29 3.01
2917 3498 1.806542 GCCTGCTCGATTGTTTCAGAA 59.193 47.619 0.00 0.00 0.00 3.02
2918 3499 1.270785 TGCCTGCTCGATTGTTTCAGA 60.271 47.619 0.00 0.00 0.00 3.27
2919 3500 1.129998 CTGCCTGCTCGATTGTTTCAG 59.870 52.381 0.00 0.00 0.00 3.02
2920 3501 1.159285 CTGCCTGCTCGATTGTTTCA 58.841 50.000 0.00 0.00 0.00 2.69
2921 3502 1.396301 CTCTGCCTGCTCGATTGTTTC 59.604 52.381 0.00 0.00 0.00 2.78
2922 3503 1.002430 TCTCTGCCTGCTCGATTGTTT 59.998 47.619 0.00 0.00 0.00 2.83
2923 3504 0.610174 TCTCTGCCTGCTCGATTGTT 59.390 50.000 0.00 0.00 0.00 2.83
2924 3505 0.829333 ATCTCTGCCTGCTCGATTGT 59.171 50.000 0.00 0.00 0.00 2.71
2925 3506 1.950828 AATCTCTGCCTGCTCGATTG 58.049 50.000 0.00 0.00 0.00 2.67
2926 3507 2.286872 CAAATCTCTGCCTGCTCGATT 58.713 47.619 0.00 0.00 0.00 3.34
2927 3508 1.209019 ACAAATCTCTGCCTGCTCGAT 59.791 47.619 0.00 0.00 0.00 3.59
2928 3509 0.610174 ACAAATCTCTGCCTGCTCGA 59.390 50.000 0.00 0.00 0.00 4.04
2929 3510 1.929836 GTACAAATCTCTGCCTGCTCG 59.070 52.381 0.00 0.00 0.00 5.03
2930 3511 1.929836 CGTACAAATCTCTGCCTGCTC 59.070 52.381 0.00 0.00 0.00 4.26
2931 3512 1.276421 ACGTACAAATCTCTGCCTGCT 59.724 47.619 0.00 0.00 0.00 4.24
2932 3513 1.726853 ACGTACAAATCTCTGCCTGC 58.273 50.000 0.00 0.00 0.00 4.85
2933 3514 2.416547 CCAACGTACAAATCTCTGCCTG 59.583 50.000 0.00 0.00 0.00 4.85
2934 3515 2.038557 ACCAACGTACAAATCTCTGCCT 59.961 45.455 0.00 0.00 0.00 4.75
2935 3516 2.159627 CACCAACGTACAAATCTCTGCC 59.840 50.000 0.00 0.00 0.00 4.85
2936 3517 2.412847 GCACCAACGTACAAATCTCTGC 60.413 50.000 0.00 0.00 0.00 4.26
2937 3518 3.067106 AGCACCAACGTACAAATCTCTG 58.933 45.455 0.00 0.00 0.00 3.35
2938 3519 3.402628 AGCACCAACGTACAAATCTCT 57.597 42.857 0.00 0.00 0.00 3.10
2939 3520 5.005779 CAGATAGCACCAACGTACAAATCTC 59.994 44.000 0.00 0.00 0.00 2.75
2940 3521 4.870426 CAGATAGCACCAACGTACAAATCT 59.130 41.667 0.00 0.00 0.00 2.40
2941 3522 4.630069 ACAGATAGCACCAACGTACAAATC 59.370 41.667 0.00 0.00 0.00 2.17
2942 3523 4.575885 ACAGATAGCACCAACGTACAAAT 58.424 39.130 0.00 0.00 0.00 2.32
2943 3524 3.997762 ACAGATAGCACCAACGTACAAA 58.002 40.909 0.00 0.00 0.00 2.83
2944 3525 3.671008 ACAGATAGCACCAACGTACAA 57.329 42.857 0.00 0.00 0.00 2.41
2945 3526 3.671008 AACAGATAGCACCAACGTACA 57.329 42.857 0.00 0.00 0.00 2.90
2946 3527 4.440103 CGATAACAGATAGCACCAACGTAC 59.560 45.833 0.00 0.00 0.00 3.67
2947 3528 4.498513 CCGATAACAGATAGCACCAACGTA 60.499 45.833 0.00 0.00 0.00 3.57
2948 3529 3.444916 CGATAACAGATAGCACCAACGT 58.555 45.455 0.00 0.00 0.00 3.99
2949 3530 2.794910 CCGATAACAGATAGCACCAACG 59.205 50.000 0.00 0.00 0.00 4.10
2950 3531 4.051922 CTCCGATAACAGATAGCACCAAC 58.948 47.826 0.00 0.00 0.00 3.77
2951 3532 3.958147 TCTCCGATAACAGATAGCACCAA 59.042 43.478 0.00 0.00 0.00 3.67
2952 3533 3.562182 TCTCCGATAACAGATAGCACCA 58.438 45.455 0.00 0.00 0.00 4.17
2953 3534 4.792521 ATCTCCGATAACAGATAGCACC 57.207 45.455 0.00 0.00 0.00 5.01
2954 3535 5.642686 GGTATCTCCGATAACAGATAGCAC 58.357 45.833 11.47 0.00 44.37 4.40
2955 3536 5.899120 GGTATCTCCGATAACAGATAGCA 57.101 43.478 11.47 0.00 44.37 3.49
2969 3550 3.368531 GGTGAATCTATGCCGGTATCTCC 60.369 52.174 8.85 1.65 0.00 3.71
2970 3551 3.511934 AGGTGAATCTATGCCGGTATCTC 59.488 47.826 8.85 2.73 0.00 2.75
2971 3552 3.259374 CAGGTGAATCTATGCCGGTATCT 59.741 47.826 8.85 0.00 0.00 1.98
2972 3553 3.589988 CAGGTGAATCTATGCCGGTATC 58.410 50.000 8.85 0.00 0.00 2.24
2973 3554 2.289694 GCAGGTGAATCTATGCCGGTAT 60.290 50.000 10.75 10.75 32.49 2.73
2974 3555 1.070134 GCAGGTGAATCTATGCCGGTA 59.930 52.381 1.90 0.00 32.49 4.02
2975 3556 0.179045 GCAGGTGAATCTATGCCGGT 60.179 55.000 1.90 0.00 32.49 5.28
2976 3557 0.179048 TGCAGGTGAATCTATGCCGG 60.179 55.000 0.00 0.00 37.89 6.13
2977 3558 0.940126 GTGCAGGTGAATCTATGCCG 59.060 55.000 0.00 0.00 37.89 5.69
2978 3559 0.940126 CGTGCAGGTGAATCTATGCC 59.060 55.000 0.00 0.00 37.89 4.40
2979 3560 0.305922 GCGTGCAGGTGAATCTATGC 59.694 55.000 8.40 0.00 39.14 3.14
2980 3561 0.940126 GGCGTGCAGGTGAATCTATG 59.060 55.000 8.40 0.00 0.00 2.23
2981 3562 0.179045 GGGCGTGCAGGTGAATCTAT 60.179 55.000 8.40 0.00 0.00 1.98
2982 3563 1.220749 GGGCGTGCAGGTGAATCTA 59.779 57.895 8.40 0.00 0.00 1.98
2983 3564 1.264749 TAGGGCGTGCAGGTGAATCT 61.265 55.000 8.40 2.09 0.00 2.40
2984 3565 1.090052 GTAGGGCGTGCAGGTGAATC 61.090 60.000 8.40 0.00 0.00 2.52
2985 3566 1.078426 GTAGGGCGTGCAGGTGAAT 60.078 57.895 8.40 0.00 0.00 2.57
2986 3567 2.214216 AGTAGGGCGTGCAGGTGAA 61.214 57.895 8.40 0.00 0.00 3.18
2987 3568 2.603473 AGTAGGGCGTGCAGGTGA 60.603 61.111 8.40 0.00 0.00 4.02
2988 3569 2.434884 CAGTAGGGCGTGCAGGTG 60.435 66.667 8.40 0.00 0.00 4.00
2989 3570 2.450479 GAACAGTAGGGCGTGCAGGT 62.450 60.000 8.40 0.00 0.00 4.00
2990 3571 1.741770 GAACAGTAGGGCGTGCAGG 60.742 63.158 1.01 1.01 0.00 4.85
2991 3572 1.005037 TGAACAGTAGGGCGTGCAG 60.005 57.895 0.00 0.00 0.00 4.41
2992 3573 1.005037 CTGAACAGTAGGGCGTGCA 60.005 57.895 0.00 0.00 0.00 4.57
2993 3574 0.108138 ATCTGAACAGTAGGGCGTGC 60.108 55.000 1.73 0.00 0.00 5.34
2994 3575 3.735237 ATATCTGAACAGTAGGGCGTG 57.265 47.619 1.73 0.00 0.00 5.34
2995 3576 4.894114 AGTTATATCTGAACAGTAGGGCGT 59.106 41.667 1.73 0.00 0.00 5.68
2996 3577 5.455056 AGTTATATCTGAACAGTAGGGCG 57.545 43.478 1.73 0.00 0.00 6.13
2997 3578 6.817184 TGAAGTTATATCTGAACAGTAGGGC 58.183 40.000 1.73 0.00 0.00 5.19
2998 3579 8.138712 GTCTGAAGTTATATCTGAACAGTAGGG 58.861 40.741 1.73 0.00 0.00 3.53
2999 3580 8.908903 AGTCTGAAGTTATATCTGAACAGTAGG 58.091 37.037 1.73 0.00 0.00 3.18
3062 3643 8.880244 TGTGATTTGTTAGCCATATATACTCCT 58.120 33.333 0.00 0.00 0.00 3.69
3063 3644 9.155975 CTGTGATTTGTTAGCCATATATACTCC 57.844 37.037 0.00 0.00 0.00 3.85
3064 3645 9.712305 ACTGTGATTTGTTAGCCATATATACTC 57.288 33.333 0.00 0.00 0.00 2.59
3068 3649 9.371136 CGATACTGTGATTTGTTAGCCATATAT 57.629 33.333 0.00 0.00 0.00 0.86
3069 3650 7.817478 CCGATACTGTGATTTGTTAGCCATATA 59.183 37.037 0.00 0.00 0.00 0.86
3070 3651 6.650807 CCGATACTGTGATTTGTTAGCCATAT 59.349 38.462 0.00 0.00 0.00 1.78
3071 3652 5.989168 CCGATACTGTGATTTGTTAGCCATA 59.011 40.000 0.00 0.00 0.00 2.74
3072 3653 4.816385 CCGATACTGTGATTTGTTAGCCAT 59.184 41.667 0.00 0.00 0.00 4.40
3073 3654 4.188462 CCGATACTGTGATTTGTTAGCCA 58.812 43.478 0.00 0.00 0.00 4.75
3074 3655 4.189231 ACCGATACTGTGATTTGTTAGCC 58.811 43.478 0.00 0.00 0.00 3.93
3075 3656 5.109903 AGACCGATACTGTGATTTGTTAGC 58.890 41.667 0.00 0.00 0.00 3.09
3076 3657 5.749109 GGAGACCGATACTGTGATTTGTTAG 59.251 44.000 0.00 0.00 0.00 2.34
3077 3658 5.186215 TGGAGACCGATACTGTGATTTGTTA 59.814 40.000 0.00 0.00 0.00 2.41
3078 3659 4.020573 TGGAGACCGATACTGTGATTTGTT 60.021 41.667 0.00 0.00 0.00 2.83
3079 3660 3.513912 TGGAGACCGATACTGTGATTTGT 59.486 43.478 0.00 0.00 0.00 2.83
3080 3661 4.123497 TGGAGACCGATACTGTGATTTG 57.877 45.455 0.00 0.00 0.00 2.32
3081 3662 4.162320 ACATGGAGACCGATACTGTGATTT 59.838 41.667 0.00 0.00 0.00 2.17
3082 3663 3.706594 ACATGGAGACCGATACTGTGATT 59.293 43.478 0.00 0.00 0.00 2.57
3083 3664 3.300388 ACATGGAGACCGATACTGTGAT 58.700 45.455 0.00 0.00 0.00 3.06
3084 3665 2.688446 GACATGGAGACCGATACTGTGA 59.312 50.000 0.00 0.00 0.00 3.58
3085 3666 2.427095 TGACATGGAGACCGATACTGTG 59.573 50.000 0.00 0.00 0.00 3.66
3086 3667 2.735151 TGACATGGAGACCGATACTGT 58.265 47.619 0.00 0.00 0.00 3.55
3087 3668 3.068732 ACATGACATGGAGACCGATACTG 59.931 47.826 19.39 0.00 33.60 2.74
3088 3669 3.300388 ACATGACATGGAGACCGATACT 58.700 45.455 19.39 0.00 33.60 2.12
3089 3670 3.735237 ACATGACATGGAGACCGATAC 57.265 47.619 19.39 0.00 33.60 2.24
3090 3671 5.596772 TCTTAACATGACATGGAGACCGATA 59.403 40.000 19.39 0.00 33.60 2.92
3091 3672 4.405680 TCTTAACATGACATGGAGACCGAT 59.594 41.667 19.39 0.00 33.60 4.18
3092 3673 3.767131 TCTTAACATGACATGGAGACCGA 59.233 43.478 19.39 5.55 33.60 4.69
3093 3674 3.865745 GTCTTAACATGACATGGAGACCG 59.134 47.826 24.09 9.81 35.07 4.79
3094 3675 3.865745 CGTCTTAACATGACATGGAGACC 59.134 47.826 26.18 16.71 36.41 3.85
3095 3676 3.865745 CCGTCTTAACATGACATGGAGAC 59.134 47.826 24.38 24.38 36.42 3.36
3096 3677 3.767131 TCCGTCTTAACATGACATGGAGA 59.233 43.478 19.39 15.09 34.37 3.71
3097 3678 4.115516 CTCCGTCTTAACATGACATGGAG 58.884 47.826 19.39 13.26 36.49 3.86
3098 3679 3.513912 ACTCCGTCTTAACATGACATGGA 59.486 43.478 19.39 4.36 34.37 3.41
3099 3680 3.618594 CACTCCGTCTTAACATGACATGG 59.381 47.826 19.39 1.96 34.37 3.66
3100 3681 3.618594 CCACTCCGTCTTAACATGACATG 59.381 47.826 14.02 14.02 34.37 3.21
3101 3682 3.260884 ACCACTCCGTCTTAACATGACAT 59.739 43.478 0.00 0.00 34.37 3.06
3102 3683 2.631062 ACCACTCCGTCTTAACATGACA 59.369 45.455 0.00 0.00 34.37 3.58
3103 3684 3.314541 ACCACTCCGTCTTAACATGAC 57.685 47.619 0.00 0.00 0.00 3.06
3104 3685 3.659786 CAACCACTCCGTCTTAACATGA 58.340 45.455 0.00 0.00 0.00 3.07
3105 3686 2.159627 GCAACCACTCCGTCTTAACATG 59.840 50.000 0.00 0.00 0.00 3.21
3106 3687 2.038557 AGCAACCACTCCGTCTTAACAT 59.961 45.455 0.00 0.00 0.00 2.71
3107 3688 1.414919 AGCAACCACTCCGTCTTAACA 59.585 47.619 0.00 0.00 0.00 2.41
3108 3689 2.165319 AGCAACCACTCCGTCTTAAC 57.835 50.000 0.00 0.00 0.00 2.01
3109 3690 2.895404 AGTAGCAACCACTCCGTCTTAA 59.105 45.455 0.00 0.00 0.00 1.85
3110 3691 2.230508 CAGTAGCAACCACTCCGTCTTA 59.769 50.000 0.00 0.00 0.00 2.10
3111 3692 1.000955 CAGTAGCAACCACTCCGTCTT 59.999 52.381 0.00 0.00 0.00 3.01
3112 3693 0.603569 CAGTAGCAACCACTCCGTCT 59.396 55.000 0.00 0.00 0.00 4.18
3113 3694 1.014564 GCAGTAGCAACCACTCCGTC 61.015 60.000 0.00 0.00 41.58 4.79
3114 3695 1.004918 GCAGTAGCAACCACTCCGT 60.005 57.895 0.00 0.00 41.58 4.69
3115 3696 3.876300 GCAGTAGCAACCACTCCG 58.124 61.111 0.00 0.00 41.58 4.63
3125 3706 1.367659 CTGGAGAAGCTTGCAGTAGC 58.632 55.000 2.10 1.95 41.53 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.