Multiple sequence alignment - TraesCS5A01G400500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G400500 chr5A 100.000 3211 0 0 1 3211 593339034 593342244 0.000000e+00 5930.0
1 TraesCS5A01G400500 chr5A 91.837 49 4 0 1161 1209 593352468 593352516 5.750000e-08 69.4
2 TraesCS5A01G400500 chr5B 91.337 2124 124 42 375 2459 580842926 580845028 0.000000e+00 2848.0
3 TraesCS5A01G400500 chr5B 86.496 274 20 5 2 272 580842669 580842928 5.240000e-73 285.0
4 TraesCS5A01G400500 chr5B 86.982 169 19 3 2785 2953 580845359 580845524 1.520000e-43 187.0
5 TraesCS5A01G400500 chr5B 93.966 116 7 0 269 384 679351537 679351652 3.290000e-40 176.0
6 TraesCS5A01G400500 chr5B 96.078 51 2 0 2464 2514 580845141 580845191 2.050000e-12 84.2
7 TraesCS5A01G400500 chr5B 91.837 49 4 0 1161 1209 580849500 580849548 5.750000e-08 69.4
8 TraesCS5A01G400500 chr5D 90.688 2137 122 42 375 2459 473847730 473849841 0.000000e+00 2772.0
9 TraesCS5A01G400500 chr5D 86.182 275 21 10 1 272 473847472 473847732 6.780000e-72 281.0
10 TraesCS5A01G400500 chr7B 99.471 189 0 1 3024 3211 403489308 403489496 3.070000e-90 342.0
11 TraesCS5A01G400500 chr7B 98.795 166 2 0 2512 2677 135044191 135044026 2.420000e-76 296.0
12 TraesCS5A01G400500 chr7B 94.737 114 6 0 269 382 612844332 612844445 9.150000e-41 178.0
13 TraesCS5A01G400500 chr6B 98.936 188 1 1 3025 3211 29243151 29242964 5.130000e-88 335.0
14 TraesCS5A01G400500 chr3B 98.930 187 2 0 3025 3211 734667570 734667384 5.130000e-88 335.0
15 TraesCS5A01G400500 chr3B 97.041 169 5 0 2509 2677 69370467 69370299 5.240000e-73 285.0
16 TraesCS5A01G400500 chr3B 96.491 171 5 1 2507 2677 542749395 542749226 6.780000e-72 281.0
17 TraesCS5A01G400500 chr3B 96.364 110 4 0 270 379 728614836 728614945 7.080000e-42 182.0
18 TraesCS5A01G400500 chr3B 88.288 111 13 0 2828 2938 720236005 720236115 2.010000e-27 134.0
19 TraesCS5A01G400500 chr6D 97.340 188 4 1 3025 3211 460266683 460266870 5.170000e-83 318.0
20 TraesCS5A01G400500 chr6D 96.277 188 6 1 3025 3211 161965233 161965420 1.120000e-79 307.0
21 TraesCS5A01G400500 chr3D 96.809 188 5 1 3025 3211 42838832 42838645 2.400000e-81 313.0
22 TraesCS5A01G400500 chr7A 94.737 190 9 1 3023 3211 219848216 219848405 8.710000e-76 294.0
23 TraesCS5A01G400500 chr7A 95.954 173 7 0 2505 2677 706669545 706669717 6.780000e-72 281.0
24 TraesCS5A01G400500 chr7A 75.135 185 38 8 1039 1220 621564618 621564797 2.660000e-11 80.5
25 TraesCS5A01G400500 chr6A 95.187 187 8 1 3026 3211 21611891 21612077 8.710000e-76 294.0
26 TraesCS5A01G400500 chr6A 89.091 55 5 1 1165 1219 109135828 109135881 2.070000e-07 67.6
27 TraesCS5A01G400500 chr1B 98.214 168 3 0 2510 2677 602074997 602074830 8.710000e-76 294.0
28 TraesCS5A01G400500 chr1B 96.364 110 4 0 269 378 88542087 88542196 7.080000e-42 182.0
29 TraesCS5A01G400500 chr1B 95.455 110 5 0 269 378 37832677 37832786 3.290000e-40 176.0
30 TraesCS5A01G400500 chr4A 98.204 167 3 0 2511 2677 702069464 702069298 3.130000e-75 292.0
31 TraesCS5A01G400500 chr3A 98.204 167 3 0 2511 2677 224325410 224325244 3.130000e-75 292.0
32 TraesCS5A01G400500 chr2D 98.193 166 3 0 2512 2677 638884010 638883845 1.130000e-74 291.0
33 TraesCS5A01G400500 chr2D 95.588 136 6 0 3025 3160 608778197 608778332 5.390000e-53 219.0
34 TraesCS5A01G400500 chr2D 90.385 52 5 0 1159 1210 316328612 316328561 5.750000e-08 69.4
35 TraesCS5A01G400500 chr1A 97.059 170 5 0 2508 2677 97821583 97821414 1.460000e-73 287.0
36 TraesCS5A01G400500 chr4B 94.872 117 6 0 261 377 60204554 60204670 1.970000e-42 183.0
37 TraesCS5A01G400500 chr2B 95.495 111 5 0 269 379 770902448 770902338 9.150000e-41 178.0
38 TraesCS5A01G400500 chr4D 95.455 110 5 0 267 376 8658736 8658845 3.290000e-40 176.0
39 TraesCS5A01G400500 chr4D 95.455 110 5 0 269 378 441486815 441486706 3.290000e-40 176.0
40 TraesCS5A01G400500 chr2A 74.299 214 47 5 1284 1490 418794957 418795169 2.050000e-12 84.2
41 TraesCS5A01G400500 chr2A 82.051 78 13 1 2852 2928 710385382 710385305 7.440000e-07 65.8
42 TraesCS5A01G400500 chr7D 76.000 150 29 7 1075 1220 540369771 540369625 1.600000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G400500 chr5A 593339034 593342244 3210 False 5930.00 5930 100.000 1 3211 1 chr5A.!!$F1 3210
1 TraesCS5A01G400500 chr5B 580842669 580849548 6879 False 694.72 2848 90.546 2 2953 5 chr5B.!!$F2 2951
2 TraesCS5A01G400500 chr5D 473847472 473849841 2369 False 1526.50 2772 88.435 1 2459 2 chr5D.!!$F1 2458

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
181 185 0.106268 TTTGCCAGAAAGCACCTCCA 60.106 50.0 0.0 0.0 43.97 3.86 F
1519 1560 0.108377 TATACTGCACGCACACCCTG 60.108 55.0 0.0 0.0 0.00 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1746 1806 0.036875 AAGAGTAGGTGCAGTTGGGC 59.963 55.0 0.0 0.0 0.00 5.36 R
3183 6426 0.178068 ATGTAGCTGTAACGGCAGGG 59.822 55.0 0.0 0.0 38.37 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 2.802816 GCGGCGATATAATCATCCATCC 59.197 50.000 12.98 0.00 0.00 3.51
105 106 3.741075 GCGGCGATATAATCATCCATCCA 60.741 47.826 12.98 0.00 0.00 3.41
107 108 4.875536 CGGCGATATAATCATCCATCCAAA 59.124 41.667 0.00 0.00 0.00 3.28
108 109 5.528690 CGGCGATATAATCATCCATCCAAAT 59.471 40.000 0.00 0.00 0.00 2.32
121 122 4.060900 CCATCCAAATACCTCATCGTCAG 58.939 47.826 0.00 0.00 0.00 3.51
132 133 3.868077 CCTCATCGTCAGAAAAGTCATCC 59.132 47.826 0.00 0.00 0.00 3.51
138 139 5.860611 TCGTCAGAAAAGTCATCCCTTTTA 58.139 37.500 0.00 0.00 42.98 1.52
142 146 8.338259 CGTCAGAAAAGTCATCCCTTTTATATG 58.662 37.037 0.00 0.00 42.98 1.78
162 166 5.941555 ATGAAATCCTTACTCTCGGAAGT 57.058 39.130 0.00 0.00 32.12 3.01
179 183 1.322442 AGTTTGCCAGAAAGCACCTC 58.678 50.000 0.00 0.00 43.97 3.85
180 184 0.315251 GTTTGCCAGAAAGCACCTCC 59.685 55.000 0.00 0.00 43.97 4.30
181 185 0.106268 TTTGCCAGAAAGCACCTCCA 60.106 50.000 0.00 0.00 43.97 3.86
182 186 0.823356 TTGCCAGAAAGCACCTCCAC 60.823 55.000 0.00 0.00 43.97 4.02
183 187 2.328099 GCCAGAAAGCACCTCCACG 61.328 63.158 0.00 0.00 0.00 4.94
184 188 1.672356 CCAGAAAGCACCTCCACGG 60.672 63.158 0.00 0.00 39.35 4.94
185 189 2.032681 AGAAAGCACCTCCACGGC 59.967 61.111 0.00 0.00 35.61 5.68
186 190 2.032681 GAAAGCACCTCCACGGCT 59.967 61.111 0.00 0.00 40.14 5.52
187 191 2.032681 AAAGCACCTCCACGGCTC 59.967 61.111 0.00 0.00 36.76 4.70
217 221 7.766278 AGTGATACAACAATGGAGTAATCTCAC 59.234 37.037 9.50 9.50 42.05 3.51
243 247 6.101997 TGAACTAGTAATGCTGATCACAGTG 58.898 40.000 0.00 0.00 45.04 3.66
269 273 1.133884 ACATCATGCTAGCTGGCACAT 60.134 47.619 28.22 18.69 45.36 3.21
270 274 2.105306 ACATCATGCTAGCTGGCACATA 59.895 45.455 28.22 15.56 45.36 2.29
271 275 2.245159 TCATGCTAGCTGGCACATAC 57.755 50.000 28.22 0.00 45.36 2.39
272 276 1.764723 TCATGCTAGCTGGCACATACT 59.235 47.619 28.22 8.24 45.36 2.12
273 277 2.171237 TCATGCTAGCTGGCACATACTT 59.829 45.455 28.22 7.41 45.36 2.24
274 278 2.315925 TGCTAGCTGGCACATACTTC 57.684 50.000 22.10 0.00 38.20 3.01
275 279 1.134401 TGCTAGCTGGCACATACTTCC 60.134 52.381 22.10 0.00 38.20 3.46
276 280 1.139853 GCTAGCTGGCACATACTTCCT 59.860 52.381 18.27 0.00 38.20 3.36
277 281 2.804933 GCTAGCTGGCACATACTTCCTC 60.805 54.545 18.27 0.00 38.20 3.71
278 282 0.543749 AGCTGGCACATACTTCCTCC 59.456 55.000 0.00 0.00 38.20 4.30
279 283 0.811616 GCTGGCACATACTTCCTCCG 60.812 60.000 0.00 0.00 38.20 4.63
280 284 0.537188 CTGGCACATACTTCCTCCGT 59.463 55.000 0.00 0.00 38.20 4.69
281 285 0.981183 TGGCACATACTTCCTCCGTT 59.019 50.000 0.00 0.00 0.00 4.44
282 286 1.066430 TGGCACATACTTCCTCCGTTC 60.066 52.381 0.00 0.00 0.00 3.95
283 287 1.653151 GCACATACTTCCTCCGTTCC 58.347 55.000 0.00 0.00 0.00 3.62
284 288 1.066430 GCACATACTTCCTCCGTTCCA 60.066 52.381 0.00 0.00 0.00 3.53
285 289 2.614481 GCACATACTTCCTCCGTTCCAA 60.614 50.000 0.00 0.00 0.00 3.53
286 290 3.670625 CACATACTTCCTCCGTTCCAAA 58.329 45.455 0.00 0.00 0.00 3.28
287 291 4.261801 CACATACTTCCTCCGTTCCAAAT 58.738 43.478 0.00 0.00 0.00 2.32
288 292 4.700213 CACATACTTCCTCCGTTCCAAATT 59.300 41.667 0.00 0.00 0.00 1.82
289 293 5.878116 CACATACTTCCTCCGTTCCAAATTA 59.122 40.000 0.00 0.00 0.00 1.40
290 294 5.878669 ACATACTTCCTCCGTTCCAAATTAC 59.121 40.000 0.00 0.00 0.00 1.89
291 295 4.635699 ACTTCCTCCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
292 296 4.981812 ACTTCCTCCGTTCCAAATTACTT 58.018 39.130 0.00 0.00 0.00 2.24
293 297 4.760204 ACTTCCTCCGTTCCAAATTACTTG 59.240 41.667 0.00 0.00 34.52 3.16
294 298 4.360951 TCCTCCGTTCCAAATTACTTGT 57.639 40.909 0.00 0.00 32.65 3.16
295 299 4.320870 TCCTCCGTTCCAAATTACTTGTC 58.679 43.478 0.00 0.00 32.65 3.18
296 300 3.124636 CCTCCGTTCCAAATTACTTGTCG 59.875 47.826 0.00 0.00 32.65 4.35
297 301 2.481185 TCCGTTCCAAATTACTTGTCGC 59.519 45.455 0.00 0.00 32.65 5.19
298 302 2.224549 CCGTTCCAAATTACTTGTCGCA 59.775 45.455 0.00 0.00 32.65 5.10
299 303 3.479006 CGTTCCAAATTACTTGTCGCAG 58.521 45.455 0.00 0.00 32.65 5.18
300 304 3.185594 CGTTCCAAATTACTTGTCGCAGA 59.814 43.478 0.00 0.00 32.65 4.26
301 305 4.319190 CGTTCCAAATTACTTGTCGCAGAA 60.319 41.667 0.00 0.00 39.69 3.02
302 306 5.516090 GTTCCAAATTACTTGTCGCAGAAA 58.484 37.500 0.00 0.00 39.69 2.52
303 307 5.957842 TCCAAATTACTTGTCGCAGAAAT 57.042 34.783 0.00 0.00 39.69 2.17
304 308 5.698832 TCCAAATTACTTGTCGCAGAAATG 58.301 37.500 0.00 0.00 39.69 2.32
305 309 4.858692 CCAAATTACTTGTCGCAGAAATGG 59.141 41.667 0.00 0.00 39.69 3.16
306 310 5.335583 CCAAATTACTTGTCGCAGAAATGGA 60.336 40.000 0.00 0.00 39.69 3.41
307 311 6.324819 CAAATTACTTGTCGCAGAAATGGAT 58.675 36.000 0.00 0.00 39.69 3.41
308 312 4.944962 TTACTTGTCGCAGAAATGGATG 57.055 40.909 0.00 0.00 39.69 3.51
309 313 2.783135 ACTTGTCGCAGAAATGGATGT 58.217 42.857 0.00 0.00 39.69 3.06
310 314 3.937814 ACTTGTCGCAGAAATGGATGTA 58.062 40.909 0.00 0.00 39.69 2.29
311 315 4.517285 ACTTGTCGCAGAAATGGATGTAT 58.483 39.130 0.00 0.00 39.69 2.29
312 316 4.572389 ACTTGTCGCAGAAATGGATGTATC 59.428 41.667 0.00 0.00 39.69 2.24
313 317 4.406648 TGTCGCAGAAATGGATGTATCT 57.593 40.909 0.00 0.00 39.69 1.98
314 318 5.529581 TGTCGCAGAAATGGATGTATCTA 57.470 39.130 0.00 0.00 39.69 1.98
315 319 5.912892 TGTCGCAGAAATGGATGTATCTAA 58.087 37.500 0.00 0.00 39.69 2.10
316 320 6.345298 TGTCGCAGAAATGGATGTATCTAAA 58.655 36.000 0.00 0.00 39.69 1.85
317 321 6.821160 TGTCGCAGAAATGGATGTATCTAAAA 59.179 34.615 0.00 0.00 39.69 1.52
318 322 7.126398 GTCGCAGAAATGGATGTATCTAAAAC 58.874 38.462 0.00 0.00 39.69 2.43
319 323 7.011482 GTCGCAGAAATGGATGTATCTAAAACT 59.989 37.037 0.00 0.00 39.69 2.66
320 324 8.201464 TCGCAGAAATGGATGTATCTAAAACTA 58.799 33.333 0.00 0.00 0.00 2.24
321 325 8.826710 CGCAGAAATGGATGTATCTAAAACTAA 58.173 33.333 0.00 0.00 0.00 2.24
351 355 9.988815 ATGTCTAGATACATCCATTTCTACAAC 57.011 33.333 0.00 0.00 35.08 3.32
352 356 8.977412 TGTCTAGATACATCCATTTCTACAACA 58.023 33.333 0.00 0.00 0.00 3.33
353 357 9.817809 GTCTAGATACATCCATTTCTACAACAA 57.182 33.333 0.00 0.00 0.00 2.83
355 359 9.823647 CTAGATACATCCATTTCTACAACAAGT 57.176 33.333 0.00 0.00 0.00 3.16
361 365 8.739972 ACATCCATTTCTACAACAAGTAATTCC 58.260 33.333 0.00 0.00 30.92 3.01
362 366 7.372451 TCCATTTCTACAACAAGTAATTCCG 57.628 36.000 0.00 0.00 30.92 4.30
363 367 7.162761 TCCATTTCTACAACAAGTAATTCCGA 58.837 34.615 0.00 0.00 30.92 4.55
364 368 7.662258 TCCATTTCTACAACAAGTAATTCCGAA 59.338 33.333 0.00 0.00 30.92 4.30
365 369 7.749126 CCATTTCTACAACAAGTAATTCCGAAC 59.251 37.037 0.00 0.00 30.92 3.95
366 370 6.456447 TTCTACAACAAGTAATTCCGAACG 57.544 37.500 0.00 0.00 30.92 3.95
367 371 4.925054 TCTACAACAAGTAATTCCGAACGG 59.075 41.667 6.94 6.94 30.92 4.44
368 372 3.731089 ACAACAAGTAATTCCGAACGGA 58.269 40.909 12.04 12.04 43.52 4.69
369 373 3.744426 ACAACAAGTAATTCCGAACGGAG 59.256 43.478 15.34 5.60 46.06 4.63
370 374 2.968675 ACAAGTAATTCCGAACGGAGG 58.031 47.619 15.34 4.52 46.06 4.30
371 375 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
372 376 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
373 377 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
403 407 8.896320 TGTAAAAATGATATATACACCTGCGT 57.104 30.769 0.00 0.00 0.00 5.24
454 460 9.703892 ACTGATTAACTAGTCATATCAAGCATC 57.296 33.333 12.70 0.00 0.00 3.91
459 465 5.524284 ACTAGTCATATCAAGCATCGTGTC 58.476 41.667 0.00 0.00 0.00 3.67
464 474 1.019673 ATCAAGCATCGTGTCCATGC 58.980 50.000 0.00 0.00 46.05 4.06
553 563 1.064803 CAGTGAGAGCGTCGCTATTCT 59.935 52.381 21.77 13.70 44.68 2.40
564 574 4.324936 GCGTCGCTATTCTCAATCTATTCC 59.675 45.833 10.68 0.00 0.00 3.01
569 579 4.624125 GCTATTCTCAATCTATTCCCGGGG 60.624 50.000 23.50 6.77 0.00 5.73
595 605 2.897271 TGAGGAAGCCATTTAGCCAA 57.103 45.000 0.00 0.00 0.00 4.52
596 606 2.726821 TGAGGAAGCCATTTAGCCAAG 58.273 47.619 0.00 0.00 0.00 3.61
597 607 1.406898 GAGGAAGCCATTTAGCCAAGC 59.593 52.381 0.00 0.00 0.00 4.01
598 608 0.461548 GGAAGCCATTTAGCCAAGCC 59.538 55.000 0.00 0.00 0.00 4.35
606 617 0.978151 TTTAGCCAAGCCCGACACTA 59.022 50.000 0.00 0.00 0.00 2.74
629 642 8.739972 ACTAAAATTCCTTACATGGCAAGTAAG 58.260 33.333 27.29 27.29 44.97 2.34
637 650 3.067106 ACATGGCAAGTAAGAACTCACG 58.933 45.455 0.00 0.00 33.75 4.35
640 653 1.727335 GGCAAGTAAGAACTCACGAGC 59.273 52.381 0.00 0.00 33.75 5.03
693 710 2.919229 GCGCCAAGAGTTCATTCAATTG 59.081 45.455 0.00 0.00 0.00 2.32
718 735 2.819608 CACCGTCACATCAAGGGAAAAT 59.180 45.455 0.00 0.00 0.00 1.82
719 736 2.819608 ACCGTCACATCAAGGGAAAATG 59.180 45.455 0.00 0.00 0.00 2.32
758 775 1.063027 ACGCATGCACATCAAGAATCG 59.937 47.619 19.57 0.00 0.00 3.34
968 994 7.234577 TCTGCACCACATATACTGATATACCAA 59.765 37.037 0.00 0.00 0.00 3.67
969 995 7.158697 TGCACCACATATACTGATATACCAAC 58.841 38.462 0.00 0.00 0.00 3.77
977 1006 9.723447 CATATACTGATATACCAACGAGCTAAG 57.277 37.037 0.00 0.00 0.00 2.18
1213 1248 0.520827 CTGCTTCGTCGAGGTACGTC 60.521 60.000 6.22 5.47 43.31 4.34
1494 1535 2.890474 CATCGCCCTGGTACGCAC 60.890 66.667 1.81 0.00 0.00 5.34
1495 1536 3.387091 ATCGCCCTGGTACGCACA 61.387 61.111 1.81 0.00 0.00 4.57
1496 1537 2.731571 ATCGCCCTGGTACGCACAT 61.732 57.895 1.81 0.00 0.00 3.21
1497 1538 2.923426 ATCGCCCTGGTACGCACATG 62.923 60.000 0.00 0.00 0.00 3.21
1506 1547 3.389221 TGGTACGCACATGCATATACTG 58.611 45.455 0.00 0.00 42.21 2.74
1517 1558 0.937304 CATATACTGCACGCACACCC 59.063 55.000 0.00 0.00 0.00 4.61
1518 1559 0.830648 ATATACTGCACGCACACCCT 59.169 50.000 0.00 0.00 0.00 4.34
1519 1560 0.108377 TATACTGCACGCACACCCTG 60.108 55.000 0.00 0.00 0.00 4.45
1527 1568 4.722193 GCACACCCTGCATACTGT 57.278 55.556 0.00 0.00 46.29 3.55
1528 1569 3.853104 GCACACCCTGCATACTGTA 57.147 52.632 0.00 0.00 46.29 2.74
1529 1570 2.332063 GCACACCCTGCATACTGTAT 57.668 50.000 0.00 0.00 46.29 2.29
1533 1574 4.438744 GCACACCCTGCATACTGTATTTTC 60.439 45.833 0.00 0.00 46.29 2.29
1535 1576 4.263727 ACACCCTGCATACTGTATTTTCCA 60.264 41.667 0.00 0.00 0.00 3.53
1536 1577 4.096382 CACCCTGCATACTGTATTTTCCAC 59.904 45.833 0.00 0.00 0.00 4.02
1537 1578 4.018415 ACCCTGCATACTGTATTTTCCACT 60.018 41.667 0.00 0.00 0.00 4.00
1538 1579 4.336433 CCCTGCATACTGTATTTTCCACTG 59.664 45.833 0.00 0.00 0.00 3.66
1539 1580 5.185454 CCTGCATACTGTATTTTCCACTGA 58.815 41.667 0.00 0.00 0.00 3.41
1540 1581 5.647658 CCTGCATACTGTATTTTCCACTGAA 59.352 40.000 0.00 0.00 0.00 3.02
1541 1582 6.319658 CCTGCATACTGTATTTTCCACTGAAT 59.680 38.462 0.00 0.00 0.00 2.57
1542 1583 7.087409 TGCATACTGTATTTTCCACTGAATG 57.913 36.000 0.00 0.00 0.00 2.67
1557 1617 6.040729 TCCACTGAATGACATGTTTGATTTGT 59.959 34.615 0.00 1.02 0.00 2.83
1689 1749 0.904649 AGATGGTCGCCATGTTCAGA 59.095 50.000 14.84 0.00 45.26 3.27
1739 1799 1.293498 CCCTCTCAGGTGAACCACG 59.707 63.158 1.62 0.00 38.89 4.94
1740 1800 1.374758 CCTCTCAGGTGAACCACGC 60.375 63.158 1.62 0.00 38.89 5.34
1762 1822 2.347490 CGCCCAACTGCACCTACT 59.653 61.111 0.00 0.00 0.00 2.57
1764 1824 1.679898 GCCCAACTGCACCTACTCT 59.320 57.895 0.00 0.00 0.00 3.24
1765 1825 0.036875 GCCCAACTGCACCTACTCTT 59.963 55.000 0.00 0.00 0.00 2.85
1766 1826 1.946283 GCCCAACTGCACCTACTCTTC 60.946 57.143 0.00 0.00 0.00 2.87
1767 1827 1.347707 CCCAACTGCACCTACTCTTCA 59.652 52.381 0.00 0.00 0.00 3.02
1768 1828 2.613977 CCCAACTGCACCTACTCTTCAG 60.614 54.545 0.00 0.00 0.00 3.02
1769 1829 2.300152 CCAACTGCACCTACTCTTCAGA 59.700 50.000 0.00 0.00 0.00 3.27
1772 1832 1.824230 CTGCACCTACTCTTCAGAGCT 59.176 52.381 3.58 0.00 45.79 4.09
1859 1929 2.032528 TGCGGCAAGTTCAGGGAG 59.967 61.111 0.00 0.00 0.00 4.30
2213 2283 0.716108 GCGACGTCTTCAACTGATGG 59.284 55.000 14.70 0.00 0.00 3.51
2244 2314 0.504384 GATCGATCGATGCGTTGGTG 59.496 55.000 33.86 0.00 34.60 4.17
2259 2334 1.296392 GGTGTACACCGGGGTTACC 59.704 63.158 28.55 21.05 42.29 2.85
2271 2346 1.302192 GGTTACCACGCTGGCTGAA 60.302 57.895 0.00 0.00 42.67 3.02
2357 2442 1.670791 TCGTTGGGTTTCACAGTTCC 58.329 50.000 0.00 0.00 0.00 3.62
2415 2500 0.784250 CGTTGATTTCGAACGTGCGG 60.784 55.000 17.57 0.00 41.00 5.69
2416 2501 0.452122 GTTGATTTCGAACGTGCGGG 60.452 55.000 17.57 0.00 0.00 6.13
2466 2551 7.222000 AGCATTCTCCATAAGTACTAGTAGC 57.778 40.000 1.87 0.00 0.00 3.58
2467 2552 6.778069 AGCATTCTCCATAAGTACTAGTAGCA 59.222 38.462 1.87 0.00 0.00 3.49
2498 2691 0.039527 AAAACCGCATTGAAGTCGGC 60.040 50.000 7.64 0.00 46.49 5.54
2514 2707 1.087771 CGGCCGATGGTCCAAAGTAC 61.088 60.000 24.07 0.00 0.00 2.73
2515 2708 0.252197 GGCCGATGGTCCAAAGTACT 59.748 55.000 0.00 0.00 0.00 2.73
2517 2710 1.742750 GCCGATGGTCCAAAGTACTCC 60.743 57.143 0.00 0.00 0.00 3.85
2518 2711 1.134491 CCGATGGTCCAAAGTACTCCC 60.134 57.143 0.00 0.00 0.00 4.30
2520 2713 2.159085 CGATGGTCCAAAGTACTCCCTC 60.159 54.545 0.00 0.00 0.00 4.30
2521 2714 1.652947 TGGTCCAAAGTACTCCCTCC 58.347 55.000 0.00 0.00 0.00 4.30
2523 2716 1.264295 GTCCAAAGTACTCCCTCCGT 58.736 55.000 0.00 0.00 0.00 4.69
2524 2717 1.204231 GTCCAAAGTACTCCCTCCGTC 59.796 57.143 0.00 0.00 0.00 4.79
2525 2718 0.535797 CCAAAGTACTCCCTCCGTCC 59.464 60.000 0.00 0.00 0.00 4.79
2526 2719 0.172803 CAAAGTACTCCCTCCGTCCG 59.827 60.000 0.00 0.00 0.00 4.79
2528 2721 2.832201 GTACTCCCTCCGTCCGGG 60.832 72.222 0.00 0.00 43.38 5.73
2530 2723 3.650298 TACTCCCTCCGTCCGGGTG 62.650 68.421 0.00 0.00 42.56 4.61
2533 2726 2.443390 CCCTCCGTCCGGGTGTAT 60.443 66.667 0.00 0.00 36.91 2.29
2535 2728 0.756442 CCCTCCGTCCGGGTGTATAA 60.756 60.000 0.00 0.00 36.91 0.98
2536 2729 0.672342 CCTCCGTCCGGGTGTATAAG 59.328 60.000 0.00 0.00 37.00 1.73
2539 2732 1.105457 CCGTCCGGGTGTATAAGTCA 58.895 55.000 0.00 0.00 0.00 3.41
2540 2733 1.684983 CCGTCCGGGTGTATAAGTCAT 59.315 52.381 0.00 0.00 0.00 3.06
2541 2734 2.101917 CCGTCCGGGTGTATAAGTCATT 59.898 50.000 0.00 0.00 0.00 2.57
2542 2735 3.378339 CGTCCGGGTGTATAAGTCATTC 58.622 50.000 0.00 0.00 0.00 2.67
2543 2736 3.378339 GTCCGGGTGTATAAGTCATTCG 58.622 50.000 0.00 0.00 0.00 3.34
2544 2737 2.132762 CCGGGTGTATAAGTCATTCGC 58.867 52.381 0.00 0.00 0.00 4.70
2545 2738 1.784856 CGGGTGTATAAGTCATTCGCG 59.215 52.381 0.00 0.00 0.00 5.87
2546 2739 2.797087 CGGGTGTATAAGTCATTCGCGT 60.797 50.000 5.77 0.00 0.00 6.01
2547 2740 3.548616 CGGGTGTATAAGTCATTCGCGTA 60.549 47.826 5.77 0.00 0.00 4.42
2548 2741 3.979495 GGGTGTATAAGTCATTCGCGTAG 59.021 47.826 5.77 0.00 0.00 3.51
2549 2742 4.498682 GGGTGTATAAGTCATTCGCGTAGT 60.499 45.833 5.77 0.00 0.00 2.73
2550 2743 5.039333 GGTGTATAAGTCATTCGCGTAGTT 58.961 41.667 5.77 2.59 0.00 2.24
2551 2744 5.172771 GGTGTATAAGTCATTCGCGTAGTTC 59.827 44.000 5.77 0.00 0.00 3.01
2552 2745 5.970023 GTGTATAAGTCATTCGCGTAGTTCT 59.030 40.000 5.77 0.00 0.00 3.01
2553 2746 7.128331 GTGTATAAGTCATTCGCGTAGTTCTA 58.872 38.462 5.77 0.00 0.00 2.10
2554 2747 7.320797 GTGTATAAGTCATTCGCGTAGTTCTAG 59.679 40.741 5.77 0.00 0.00 2.43
2555 2748 3.694535 AGTCATTCGCGTAGTTCTAGG 57.305 47.619 5.77 0.00 0.00 3.02
2556 2749 3.015327 AGTCATTCGCGTAGTTCTAGGT 58.985 45.455 5.77 0.00 0.00 3.08
2557 2750 3.065095 AGTCATTCGCGTAGTTCTAGGTC 59.935 47.826 5.77 0.00 0.00 3.85
2558 2751 3.011818 TCATTCGCGTAGTTCTAGGTCA 58.988 45.455 5.77 0.00 0.00 4.02
2559 2752 3.630769 TCATTCGCGTAGTTCTAGGTCAT 59.369 43.478 5.77 0.00 0.00 3.06
2560 2753 3.687572 TTCGCGTAGTTCTAGGTCATC 57.312 47.619 5.77 0.00 0.00 2.92
2561 2754 1.596260 TCGCGTAGTTCTAGGTCATCG 59.404 52.381 5.77 0.00 0.00 3.84
2562 2755 1.596260 CGCGTAGTTCTAGGTCATCGA 59.404 52.381 0.00 0.00 0.00 3.59
2563 2756 2.223611 CGCGTAGTTCTAGGTCATCGAT 59.776 50.000 0.00 0.00 0.00 3.59
2564 2757 3.303857 CGCGTAGTTCTAGGTCATCGATT 60.304 47.826 0.00 0.00 0.00 3.34
2565 2758 4.608951 GCGTAGTTCTAGGTCATCGATTT 58.391 43.478 0.00 0.00 0.00 2.17
2566 2759 5.559608 CGCGTAGTTCTAGGTCATCGATTTA 60.560 44.000 0.00 0.00 0.00 1.40
2567 2760 6.204359 GCGTAGTTCTAGGTCATCGATTTAA 58.796 40.000 0.00 0.00 0.00 1.52
2568 2761 6.360148 GCGTAGTTCTAGGTCATCGATTTAAG 59.640 42.308 0.00 0.00 0.00 1.85
2569 2762 7.637229 CGTAGTTCTAGGTCATCGATTTAAGA 58.363 38.462 0.00 0.00 0.00 2.10
2570 2763 8.127327 CGTAGTTCTAGGTCATCGATTTAAGAA 58.873 37.037 0.00 0.00 0.00 2.52
2571 2764 9.798994 GTAGTTCTAGGTCATCGATTTAAGAAA 57.201 33.333 0.00 0.00 0.00 2.52
2573 2766 9.892130 AGTTCTAGGTCATCGATTTAAGAAATT 57.108 29.630 0.00 0.00 0.00 1.82
2616 2809 9.832445 TCATGAAAAGTATACCACTAGATTTCC 57.168 33.333 0.00 0.00 36.04 3.13
2617 2810 9.613428 CATGAAAAGTATACCACTAGATTTCCA 57.387 33.333 0.00 0.00 36.04 3.53
2618 2811 9.614792 ATGAAAAGTATACCACTAGATTTCCAC 57.385 33.333 0.00 0.00 36.04 4.02
2619 2812 8.598916 TGAAAAGTATACCACTAGATTTCCACA 58.401 33.333 0.00 0.00 36.04 4.17
2620 2813 8.788325 AAAAGTATACCACTAGATTTCCACAC 57.212 34.615 0.00 0.00 36.04 3.82
2621 2814 6.145338 AGTATACCACTAGATTTCCACACG 57.855 41.667 0.00 0.00 34.98 4.49
2622 2815 2.762535 ACCACTAGATTTCCACACGG 57.237 50.000 0.00 0.00 0.00 4.94
2623 2816 2.253610 ACCACTAGATTTCCACACGGA 58.746 47.619 0.00 0.00 40.60 4.69
2624 2817 2.838202 ACCACTAGATTTCCACACGGAT 59.162 45.455 0.00 0.00 42.41 4.18
2625 2818 3.198068 CCACTAGATTTCCACACGGATG 58.802 50.000 0.00 0.00 42.41 3.51
2626 2819 3.369471 CCACTAGATTTCCACACGGATGT 60.369 47.826 0.00 0.00 42.41 3.06
2627 2820 4.142026 CCACTAGATTTCCACACGGATGTA 60.142 45.833 0.00 0.00 42.41 2.29
2628 2821 5.043903 CACTAGATTTCCACACGGATGTAG 58.956 45.833 0.00 0.00 42.41 2.74
2629 2822 4.710375 ACTAGATTTCCACACGGATGTAGT 59.290 41.667 0.00 0.00 42.41 2.73
2630 2823 4.553330 AGATTTCCACACGGATGTAGTT 57.447 40.909 0.00 0.00 42.41 2.24
2631 2824 4.906618 AGATTTCCACACGGATGTAGTTT 58.093 39.130 0.00 0.00 42.41 2.66
2632 2825 5.313712 AGATTTCCACACGGATGTAGTTTT 58.686 37.500 0.00 0.00 42.41 2.43
2633 2826 5.768164 AGATTTCCACACGGATGTAGTTTTT 59.232 36.000 0.00 0.00 42.41 1.94
2634 2827 6.938030 AGATTTCCACACGGATGTAGTTTTTA 59.062 34.615 0.00 0.00 42.41 1.52
2635 2828 6.939132 TTTCCACACGGATGTAGTTTTTAA 57.061 33.333 0.00 0.00 42.41 1.52
2636 2829 6.939132 TTCCACACGGATGTAGTTTTTAAA 57.061 33.333 0.00 0.00 42.41 1.52
2637 2830 7.513371 TTCCACACGGATGTAGTTTTTAAAT 57.487 32.000 0.00 0.00 42.41 1.40
2638 2831 8.618702 TTCCACACGGATGTAGTTTTTAAATA 57.381 30.769 0.00 0.00 42.41 1.40
2639 2832 8.795842 TCCACACGGATGTAGTTTTTAAATAT 57.204 30.769 0.00 0.00 36.72 1.28
2640 2833 9.887629 TCCACACGGATGTAGTTTTTAAATATA 57.112 29.630 0.00 0.00 36.72 0.86
2700 2893 4.994852 TCCGACTGTTTAAAGATTGTGAGG 59.005 41.667 0.00 0.00 0.00 3.86
2702 2895 4.452455 CGACTGTTTAAAGATTGTGAGGCT 59.548 41.667 0.00 0.00 0.00 4.58
2714 2907 5.302823 AGATTGTGAGGCTAAAAGCAAAACT 59.697 36.000 0.78 0.00 44.75 2.66
2715 2908 5.337578 TTGTGAGGCTAAAAGCAAAACTT 57.662 34.783 0.78 0.00 44.75 2.66
2716 2909 4.681744 TGTGAGGCTAAAAGCAAAACTTG 58.318 39.130 0.78 0.00 44.75 3.16
2717 2910 4.159506 TGTGAGGCTAAAAGCAAAACTTGT 59.840 37.500 0.78 0.00 44.75 3.16
2784 2977 6.655078 AATCAAGCACTCACCAAAAGTAAT 57.345 33.333 0.00 0.00 0.00 1.89
2788 2981 3.004734 AGCACTCACCAAAAGTAATGTGC 59.995 43.478 0.00 0.00 42.95 4.57
2791 2984 3.569701 ACTCACCAAAAGTAATGTGCCAG 59.430 43.478 0.00 0.00 0.00 4.85
2792 2985 2.890311 TCACCAAAAGTAATGTGCCAGG 59.110 45.455 0.00 0.00 0.00 4.45
2793 2986 2.627699 CACCAAAAGTAATGTGCCAGGT 59.372 45.455 0.00 0.00 0.00 4.00
2801 3028 0.039472 AATGTGCCAGGTGTGCCATA 59.961 50.000 0.00 0.00 37.19 2.74
2816 3043 1.813862 GCCATAGCACGCCCAGATTTA 60.814 52.381 0.00 0.00 39.53 1.40
2817 3044 2.571212 CCATAGCACGCCCAGATTTAA 58.429 47.619 0.00 0.00 0.00 1.52
2819 3046 3.380004 CCATAGCACGCCCAGATTTAAAA 59.620 43.478 0.00 0.00 0.00 1.52
2869 3096 2.167662 ACTGATTTTTAAGGCCCGTGG 58.832 47.619 0.00 0.00 0.00 4.94
2876 3103 0.985760 TTAAGGCCCGTGGAAGCTAA 59.014 50.000 0.00 0.00 0.00 3.09
2886 3113 5.472137 GCCCGTGGAAGCTAATTGAAATATA 59.528 40.000 0.00 0.00 0.00 0.86
2927 3154 7.346208 GTGTGCACACCCTTTATTTTATTTC 57.654 36.000 34.94 7.51 40.85 2.17
2928 3155 6.367695 GTGTGCACACCCTTTATTTTATTTCC 59.632 38.462 34.94 7.16 40.85 3.13
2930 3157 6.931840 GTGCACACCCTTTATTTTATTTCCAA 59.068 34.615 13.17 0.00 0.00 3.53
2931 3158 7.117667 GTGCACACCCTTTATTTTATTTCCAAG 59.882 37.037 13.17 0.00 0.00 3.61
2938 3165 3.775661 ATTTTATTTCCAAGTCCGCCG 57.224 42.857 0.00 0.00 0.00 6.46
2941 3168 0.035820 TATTTCCAAGTCCGCCGCTT 60.036 50.000 0.00 0.00 0.00 4.68
2960 3187 7.667043 CCGCTTATTGGCTAGTATTTATTCA 57.333 36.000 0.00 0.00 0.00 2.57
2961 3188 7.519002 CCGCTTATTGGCTAGTATTTATTCAC 58.481 38.462 0.00 0.00 0.00 3.18
2962 3189 7.172532 CCGCTTATTGGCTAGTATTTATTCACA 59.827 37.037 0.00 0.00 0.00 3.58
2963 3190 8.556194 CGCTTATTGGCTAGTATTTATTCACAA 58.444 33.333 0.00 0.00 0.00 3.33
2999 3226 4.178540 TGGCTAGTACTATGTCGTTTTGC 58.821 43.478 2.33 0.00 0.00 3.68
3011 3238 5.090652 TGTCGTTTTGCTGTCTTATGAAC 57.909 39.130 0.00 0.00 0.00 3.18
3016 3243 5.616866 CGTTTTGCTGTCTTATGAACGGAAT 60.617 40.000 0.00 0.00 35.93 3.01
3021 3248 5.353123 TGCTGTCTTATGAACGGAATTTACC 59.647 40.000 0.00 0.00 0.00 2.85
3024 3251 5.353123 TGTCTTATGAACGGAATTTACCTGC 59.647 40.000 0.00 0.00 0.00 4.85
3025 3252 4.569162 TCTTATGAACGGAATTTACCTGCG 59.431 41.667 0.00 0.00 0.00 5.18
3027 3254 2.768698 TGAACGGAATTTACCTGCGAA 58.231 42.857 0.00 0.00 0.00 4.70
3028 3255 3.139850 TGAACGGAATTTACCTGCGAAA 58.860 40.909 0.00 0.00 0.00 3.46
3029 3256 3.187637 TGAACGGAATTTACCTGCGAAAG 59.812 43.478 0.00 0.00 0.00 2.62
3030 3257 2.774687 ACGGAATTTACCTGCGAAAGT 58.225 42.857 0.00 0.00 0.00 2.66
3031 3258 2.482721 ACGGAATTTACCTGCGAAAGTG 59.517 45.455 0.00 0.00 0.00 3.16
3032 3259 2.727916 CGGAATTTACCTGCGAAAGTGC 60.728 50.000 0.00 0.00 0.00 4.40
3033 3260 2.488153 GGAATTTACCTGCGAAAGTGCT 59.512 45.455 0.00 0.00 35.36 4.40
3034 3261 3.687698 GGAATTTACCTGCGAAAGTGCTA 59.312 43.478 0.00 0.00 35.36 3.49
3035 3262 4.335594 GGAATTTACCTGCGAAAGTGCTAT 59.664 41.667 0.00 0.00 35.36 2.97
3036 3263 5.163652 GGAATTTACCTGCGAAAGTGCTATT 60.164 40.000 0.00 0.00 35.36 1.73
3038 3265 7.255139 GGAATTTACCTGCGAAAGTGCTATTAT 60.255 37.037 0.00 0.00 35.36 1.28
3040 3267 2.614057 ACCTGCGAAAGTGCTATTATGC 59.386 45.455 0.00 0.00 35.36 3.14
3041 3268 2.874701 CCTGCGAAAGTGCTATTATGCT 59.125 45.455 0.00 0.00 35.36 3.79
3042 3269 3.059325 CCTGCGAAAGTGCTATTATGCTC 60.059 47.826 0.00 0.00 35.36 4.26
3044 3271 2.224314 GCGAAAGTGCTATTATGCTCCC 59.776 50.000 0.00 0.00 0.00 4.30
3045 3272 2.476619 CGAAAGTGCTATTATGCTCCCG 59.523 50.000 0.00 0.00 0.00 5.14
3046 3273 3.728845 GAAAGTGCTATTATGCTCCCGA 58.271 45.455 0.00 0.00 0.00 5.14
3071 3298 6.673154 CACAAATGCTCATGTTATCTGAGA 57.327 37.500 4.57 0.00 42.22 3.27
3073 3300 7.132863 CACAAATGCTCATGTTATCTGAGATG 58.867 38.462 4.96 0.00 42.22 2.90
3074 3301 6.827251 ACAAATGCTCATGTTATCTGAGATGT 59.173 34.615 4.96 1.49 42.22 3.06
3076 3303 7.493743 AATGCTCATGTTATCTGAGATGTTC 57.506 36.000 4.96 0.00 42.22 3.18
3077 3304 5.045872 TGCTCATGTTATCTGAGATGTTCG 58.954 41.667 4.96 0.00 42.22 3.95
3080 3307 6.292061 GCTCATGTTATCTGAGATGTTCGTTC 60.292 42.308 4.96 0.00 42.22 3.95
3082 3309 4.755411 TGTTATCTGAGATGTTCGTTCCC 58.245 43.478 4.96 0.00 0.00 3.97
3083 3310 4.466370 TGTTATCTGAGATGTTCGTTCCCT 59.534 41.667 4.96 0.00 0.00 4.20
3084 3311 3.810310 ATCTGAGATGTTCGTTCCCTC 57.190 47.619 0.00 0.00 0.00 4.30
3085 3312 2.808919 TCTGAGATGTTCGTTCCCTCT 58.191 47.619 0.00 0.00 0.00 3.69
3086 3313 2.493675 TCTGAGATGTTCGTTCCCTCTG 59.506 50.000 0.00 0.00 0.00 3.35
3090 6333 3.370104 AGATGTTCGTTCCCTCTGAGAT 58.630 45.455 6.17 0.00 0.00 2.75
3100 6343 1.406614 CCCTCTGAGATTCACACTGCC 60.407 57.143 6.17 0.00 0.00 4.85
3101 6344 1.277273 CCTCTGAGATTCACACTGCCA 59.723 52.381 6.17 0.00 0.00 4.92
3103 6346 1.973515 TCTGAGATTCACACTGCCACT 59.026 47.619 0.00 0.00 0.00 4.00
3104 6347 2.028658 TCTGAGATTCACACTGCCACTC 60.029 50.000 0.00 0.00 0.00 3.51
3105 6348 1.337167 TGAGATTCACACTGCCACTCG 60.337 52.381 0.00 0.00 0.00 4.18
3106 6349 0.681733 AGATTCACACTGCCACTCGT 59.318 50.000 0.00 0.00 0.00 4.18
3107 6350 1.893137 AGATTCACACTGCCACTCGTA 59.107 47.619 0.00 0.00 0.00 3.43
3109 6352 2.831685 TTCACACTGCCACTCGTATT 57.168 45.000 0.00 0.00 0.00 1.89
3110 6353 2.831685 TCACACTGCCACTCGTATTT 57.168 45.000 0.00 0.00 0.00 1.40
3112 6355 2.299013 TCACACTGCCACTCGTATTTCT 59.701 45.455 0.00 0.00 0.00 2.52
3114 6357 1.394917 CACTGCCACTCGTATTTCTGC 59.605 52.381 0.00 0.00 0.00 4.26
3115 6358 1.001974 ACTGCCACTCGTATTTCTGCA 59.998 47.619 0.00 0.00 0.00 4.41
3117 6360 2.009051 TGCCACTCGTATTTCTGCATG 58.991 47.619 0.00 0.00 0.00 4.06
3119 6362 3.194861 GCCACTCGTATTTCTGCATGTA 58.805 45.455 0.00 0.00 0.00 2.29
3121 6364 4.319046 GCCACTCGTATTTCTGCATGTATG 60.319 45.833 0.00 0.00 0.00 2.39
3122 6365 4.811024 CCACTCGTATTTCTGCATGTATGT 59.189 41.667 0.00 0.00 0.00 2.29
3124 6367 4.811024 ACTCGTATTTCTGCATGTATGTGG 59.189 41.667 0.00 0.00 0.00 4.17
3126 6369 3.312146 CGTATTTCTGCATGTATGTGGCA 59.688 43.478 0.00 0.00 35.96 4.92
3132 6375 3.843893 TGCATGTATGTGGCAGAGTAT 57.156 42.857 0.00 0.00 32.95 2.12
3133 6376 4.953940 TGCATGTATGTGGCAGAGTATA 57.046 40.909 0.00 0.00 32.95 1.47
3134 6377 5.488262 TGCATGTATGTGGCAGAGTATAT 57.512 39.130 0.00 0.00 32.95 0.86
3135 6378 5.868454 TGCATGTATGTGGCAGAGTATATT 58.132 37.500 0.00 0.00 32.95 1.28
3137 6380 7.449247 TGCATGTATGTGGCAGAGTATATTAA 58.551 34.615 0.00 0.00 32.95 1.40
3139 6382 9.599866 GCATGTATGTGGCAGAGTATATTAATA 57.400 33.333 0.00 0.00 0.00 0.98
3142 6385 9.653287 TGTATGTGGCAGAGTATATTAATAAGC 57.347 33.333 0.00 0.00 0.00 3.09
3143 6386 9.653287 GTATGTGGCAGAGTATATTAATAAGCA 57.347 33.333 0.00 0.00 0.00 3.91
3145 6388 7.505258 TGTGGCAGAGTATATTAATAAGCACA 58.495 34.615 0.00 0.00 0.00 4.57
3146 6389 7.657354 TGTGGCAGAGTATATTAATAAGCACAG 59.343 37.037 0.00 0.00 0.00 3.66
3147 6390 7.657761 GTGGCAGAGTATATTAATAAGCACAGT 59.342 37.037 0.00 0.00 0.00 3.55
3148 6391 8.210946 TGGCAGAGTATATTAATAAGCACAGTT 58.789 33.333 0.00 0.00 0.00 3.16
3149 6392 8.713271 GGCAGAGTATATTAATAAGCACAGTTC 58.287 37.037 0.00 0.00 0.00 3.01
3150 6393 8.428536 GCAGAGTATATTAATAAGCACAGTTCG 58.571 37.037 0.00 0.00 0.00 3.95
3151 6394 9.678941 CAGAGTATATTAATAAGCACAGTTCGA 57.321 33.333 0.00 0.00 0.00 3.71
3154 6397 9.464714 AGTATATTAATAAGCACAGTTCGAGTG 57.535 33.333 0.00 0.00 39.92 3.51
3155 6398 7.715265 ATATTAATAAGCACAGTTCGAGTGG 57.285 36.000 0.00 0.00 37.46 4.00
3156 6399 1.726853 ATAAGCACAGTTCGAGTGGC 58.273 50.000 5.55 4.45 37.46 5.01
3157 6400 0.320421 TAAGCACAGTTCGAGTGGCC 60.320 55.000 0.00 0.00 37.46 5.36
3158 6401 3.050275 GCACAGTTCGAGTGGCCC 61.050 66.667 0.00 0.00 37.46 5.80
3159 6402 2.425592 CACAGTTCGAGTGGCCCA 59.574 61.111 0.00 0.00 33.43 5.36
3160 6403 1.961277 CACAGTTCGAGTGGCCCAC 60.961 63.158 5.50 5.50 33.43 4.61
3161 6404 2.738521 CAGTTCGAGTGGCCCACG 60.739 66.667 8.52 3.31 39.64 4.94
3173 6416 1.069090 GCCCACGCCGATCAGATAA 59.931 57.895 0.00 0.00 0.00 1.75
3174 6417 0.320771 GCCCACGCCGATCAGATAAT 60.321 55.000 0.00 0.00 0.00 1.28
3175 6418 1.878102 GCCCACGCCGATCAGATAATT 60.878 52.381 0.00 0.00 0.00 1.40
3176 6419 2.611971 GCCCACGCCGATCAGATAATTA 60.612 50.000 0.00 0.00 0.00 1.40
3179 6422 4.093408 CCCACGCCGATCAGATAATTATTG 59.907 45.833 0.00 1.10 0.00 1.90
3180 6423 4.436050 CCACGCCGATCAGATAATTATTGC 60.436 45.833 0.00 0.00 0.00 3.56
3181 6424 4.152223 CACGCCGATCAGATAATTATTGCA 59.848 41.667 0.00 0.00 0.00 4.08
3183 6426 4.656041 GCCGATCAGATAATTATTGCAGC 58.344 43.478 0.00 0.00 0.00 5.25
3184 6427 4.437930 GCCGATCAGATAATTATTGCAGCC 60.438 45.833 0.00 0.00 0.00 4.85
3187 6430 5.163784 CGATCAGATAATTATTGCAGCCCTG 60.164 44.000 0.00 1.11 0.00 4.45
3197 6440 3.127533 CAGCCCTGCCGTTACAGC 61.128 66.667 0.00 0.00 36.29 4.40
3198 6441 3.322466 AGCCCTGCCGTTACAGCT 61.322 61.111 0.00 0.00 36.29 4.24
3199 6442 1.987855 AGCCCTGCCGTTACAGCTA 60.988 57.895 0.00 0.00 36.29 3.32
3200 6443 1.814169 GCCCTGCCGTTACAGCTAC 60.814 63.158 0.00 0.00 36.29 3.58
3201 6444 1.594833 CCCTGCCGTTACAGCTACA 59.405 57.895 0.00 0.00 36.29 2.74
3202 6445 0.178068 CCCTGCCGTTACAGCTACAT 59.822 55.000 0.00 0.00 36.29 2.29
3203 6446 1.571919 CCTGCCGTTACAGCTACATC 58.428 55.000 0.00 0.00 36.29 3.06
3205 6448 0.179121 TGCCGTTACAGCTACATCCG 60.179 55.000 0.00 0.00 0.00 4.18
3206 6449 0.874607 GCCGTTACAGCTACATCCGG 60.875 60.000 0.00 0.00 37.08 5.14
3207 6450 0.458669 CCGTTACAGCTACATCCGGT 59.541 55.000 0.00 0.00 0.00 5.28
3209 6452 1.404391 CGTTACAGCTACATCCGGTCT 59.596 52.381 0.00 0.00 0.00 3.85
3210 6453 2.615447 CGTTACAGCTACATCCGGTCTA 59.385 50.000 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.950680 AATTTGATTACATACGTGGATCATTTC 57.049 29.630 0.00 0.00 34.31 2.17
19 20 7.511506 GCTGCGTTTAATCACGAATTTGATTAC 60.512 37.037 10.71 4.66 44.50 1.89
21 22 5.286082 GCTGCGTTTAATCACGAATTTGATT 59.714 36.000 9.67 9.67 46.00 2.57
104 105 6.368791 TGACTTTTCTGACGATGAGGTATTTG 59.631 38.462 0.00 0.00 0.00 2.32
105 106 6.464222 TGACTTTTCTGACGATGAGGTATTT 58.536 36.000 0.00 0.00 0.00 1.40
107 108 5.661056 TGACTTTTCTGACGATGAGGTAT 57.339 39.130 0.00 0.00 0.00 2.73
108 109 5.394224 GGATGACTTTTCTGACGATGAGGTA 60.394 44.000 0.00 0.00 0.00 3.08
132 133 9.209175 CCGAGAGTAAGGATTTCATATAAAAGG 57.791 37.037 0.00 0.00 0.00 3.11
138 139 7.604657 ACTTCCGAGAGTAAGGATTTCATAT 57.395 36.000 0.00 0.00 36.28 1.78
142 146 5.163844 GCAAACTTCCGAGAGTAAGGATTTC 60.164 44.000 0.00 0.00 36.28 2.17
152 156 2.169832 TTCTGGCAAACTTCCGAGAG 57.830 50.000 0.00 0.00 0.00 3.20
162 166 0.106268 TGGAGGTGCTTTCTGGCAAA 60.106 50.000 0.00 0.00 44.18 3.68
179 183 0.525668 GTATCACTGTCGAGCCGTGG 60.526 60.000 8.31 0.00 0.00 4.94
180 184 0.170339 TGTATCACTGTCGAGCCGTG 59.830 55.000 0.00 0.00 0.00 4.94
181 185 0.885879 TTGTATCACTGTCGAGCCGT 59.114 50.000 0.00 0.00 0.00 5.68
182 186 1.269166 GTTGTATCACTGTCGAGCCG 58.731 55.000 0.00 0.00 0.00 5.52
183 187 2.363788 TGTTGTATCACTGTCGAGCC 57.636 50.000 0.00 0.00 0.00 4.70
184 188 3.062639 CCATTGTTGTATCACTGTCGAGC 59.937 47.826 0.00 0.00 0.00 5.03
185 189 4.494484 TCCATTGTTGTATCACTGTCGAG 58.506 43.478 0.00 0.00 0.00 4.04
186 190 4.021456 ACTCCATTGTTGTATCACTGTCGA 60.021 41.667 0.00 0.00 0.00 4.20
187 191 4.245660 ACTCCATTGTTGTATCACTGTCG 58.754 43.478 0.00 0.00 0.00 4.35
217 221 6.815641 ACTGTGATCAGCATTACTAGTTCAAG 59.184 38.462 0.00 0.22 44.77 3.02
269 273 5.750352 AGTAATTTGGAACGGAGGAAGTA 57.250 39.130 0.00 0.00 0.00 2.24
270 274 4.635699 AGTAATTTGGAACGGAGGAAGT 57.364 40.909 0.00 0.00 0.00 3.01
271 275 4.760204 ACAAGTAATTTGGAACGGAGGAAG 59.240 41.667 0.00 0.00 41.25 3.46
272 276 4.721132 ACAAGTAATTTGGAACGGAGGAA 58.279 39.130 0.00 0.00 41.25 3.36
273 277 4.320870 GACAAGTAATTTGGAACGGAGGA 58.679 43.478 0.00 0.00 41.25 3.71
274 278 3.124636 CGACAAGTAATTTGGAACGGAGG 59.875 47.826 0.00 0.00 41.25 4.30
275 279 3.424433 GCGACAAGTAATTTGGAACGGAG 60.424 47.826 0.00 0.00 41.25 4.63
276 280 2.481185 GCGACAAGTAATTTGGAACGGA 59.519 45.455 0.00 0.00 41.25 4.69
277 281 2.224549 TGCGACAAGTAATTTGGAACGG 59.775 45.455 0.00 0.00 41.25 4.44
278 282 3.185594 TCTGCGACAAGTAATTTGGAACG 59.814 43.478 0.00 0.00 41.25 3.95
279 283 4.742438 TCTGCGACAAGTAATTTGGAAC 57.258 40.909 0.00 0.00 41.25 3.62
280 284 5.759506 TTTCTGCGACAAGTAATTTGGAA 57.240 34.783 0.00 0.00 41.25 3.53
281 285 5.335583 CCATTTCTGCGACAAGTAATTTGGA 60.336 40.000 0.00 0.00 41.25 3.53
282 286 4.858692 CCATTTCTGCGACAAGTAATTTGG 59.141 41.667 0.00 0.00 41.25 3.28
283 287 5.698832 TCCATTTCTGCGACAAGTAATTTG 58.301 37.500 0.00 0.00 42.68 2.32
284 288 5.957842 TCCATTTCTGCGACAAGTAATTT 57.042 34.783 0.00 0.00 0.00 1.82
285 289 5.415701 ACATCCATTTCTGCGACAAGTAATT 59.584 36.000 0.00 0.00 0.00 1.40
286 290 4.943705 ACATCCATTTCTGCGACAAGTAAT 59.056 37.500 0.00 0.00 0.00 1.89
287 291 4.323417 ACATCCATTTCTGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
288 292 3.937814 ACATCCATTTCTGCGACAAGTA 58.062 40.909 0.00 0.00 0.00 2.24
289 293 2.783135 ACATCCATTTCTGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
290 294 4.813161 AGATACATCCATTTCTGCGACAAG 59.187 41.667 0.00 0.00 0.00 3.16
291 295 4.769688 AGATACATCCATTTCTGCGACAA 58.230 39.130 0.00 0.00 0.00 3.18
292 296 4.406648 AGATACATCCATTTCTGCGACA 57.593 40.909 0.00 0.00 0.00 4.35
293 297 6.844696 TTTAGATACATCCATTTCTGCGAC 57.155 37.500 0.00 0.00 0.00 5.19
294 298 7.047891 AGTTTTAGATACATCCATTTCTGCGA 58.952 34.615 0.00 0.00 0.00 5.10
295 299 7.251704 AGTTTTAGATACATCCATTTCTGCG 57.748 36.000 0.00 0.00 0.00 5.18
325 329 9.988815 GTTGTAGAAATGGATGTATCTAGACAT 57.011 33.333 0.00 0.00 42.82 3.06
326 330 8.977412 TGTTGTAGAAATGGATGTATCTAGACA 58.023 33.333 0.00 0.00 0.00 3.41
327 331 9.817809 TTGTTGTAGAAATGGATGTATCTAGAC 57.182 33.333 0.00 0.00 0.00 2.59
329 333 9.823647 ACTTGTTGTAGAAATGGATGTATCTAG 57.176 33.333 0.00 0.00 0.00 2.43
335 339 8.739972 GGAATTACTTGTTGTAGAAATGGATGT 58.260 33.333 0.00 0.00 32.08 3.06
336 340 7.910162 CGGAATTACTTGTTGTAGAAATGGATG 59.090 37.037 0.00 0.00 32.08 3.51
337 341 7.827236 TCGGAATTACTTGTTGTAGAAATGGAT 59.173 33.333 0.00 0.00 32.08 3.41
338 342 7.162761 TCGGAATTACTTGTTGTAGAAATGGA 58.837 34.615 0.00 0.00 32.08 3.41
339 343 7.372451 TCGGAATTACTTGTTGTAGAAATGG 57.628 36.000 0.00 0.00 32.08 3.16
340 344 7.477422 CGTTCGGAATTACTTGTTGTAGAAATG 59.523 37.037 0.00 0.00 32.08 2.32
341 345 7.360607 CCGTTCGGAATTACTTGTTGTAGAAAT 60.361 37.037 5.19 0.00 32.08 2.17
342 346 6.073657 CCGTTCGGAATTACTTGTTGTAGAAA 60.074 38.462 5.19 0.00 32.08 2.52
343 347 5.406175 CCGTTCGGAATTACTTGTTGTAGAA 59.594 40.000 5.19 0.00 32.08 2.10
344 348 4.925054 CCGTTCGGAATTACTTGTTGTAGA 59.075 41.667 5.19 0.00 32.08 2.59
345 349 4.925054 TCCGTTCGGAATTACTTGTTGTAG 59.075 41.667 11.66 0.00 32.08 2.74
346 350 4.880759 TCCGTTCGGAATTACTTGTTGTA 58.119 39.130 11.66 0.00 0.00 2.41
347 351 3.731089 TCCGTTCGGAATTACTTGTTGT 58.269 40.909 11.66 0.00 0.00 3.32
348 352 3.124636 CCTCCGTTCGGAATTACTTGTTG 59.875 47.826 14.79 0.00 33.41 3.33
349 353 3.332034 CCTCCGTTCGGAATTACTTGTT 58.668 45.455 14.79 0.00 33.41 2.83
350 354 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
351 355 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
352 356 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
353 357 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
354 358 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
355 359 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
356 360 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
357 361 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
358 362 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
359 363 0.033796 ATGTACTCCCTCCGTTCGGA 60.034 55.000 13.34 13.34 0.00 4.55
360 364 0.102481 CATGTACTCCCTCCGTTCGG 59.898 60.000 4.74 4.74 0.00 4.30
361 365 0.815734 ACATGTACTCCCTCCGTTCG 59.184 55.000 0.00 0.00 0.00 3.95
362 366 4.460948 TTTACATGTACTCCCTCCGTTC 57.539 45.455 4.68 0.00 0.00 3.95
363 367 4.895668 TTTTACATGTACTCCCTCCGTT 57.104 40.909 4.68 0.00 0.00 4.44
364 368 4.895668 TTTTTACATGTACTCCCTCCGT 57.104 40.909 4.68 0.00 0.00 4.69
365 369 5.424757 TCATTTTTACATGTACTCCCTCCG 58.575 41.667 4.68 0.00 0.00 4.63
403 407 7.504924 AAGTTTCCATCGAGTGAAATTACAA 57.495 32.000 13.32 0.00 0.00 2.41
451 457 1.129251 GTTGACAGCATGGACACGATG 59.871 52.381 0.00 0.00 43.62 3.84
454 460 0.943835 TCGTTGACAGCATGGACACG 60.944 55.000 0.00 0.00 43.62 4.49
459 465 0.798776 GACCTTCGTTGACAGCATGG 59.201 55.000 0.00 0.00 43.62 3.66
464 474 2.225068 ACTGTGACCTTCGTTGACAG 57.775 50.000 0.00 0.00 38.13 3.51
507 517 4.389374 CAGTTCAAAAGGGCAAGTAGAGA 58.611 43.478 0.00 0.00 0.00 3.10
508 518 3.503748 CCAGTTCAAAAGGGCAAGTAGAG 59.496 47.826 0.00 0.00 0.00 2.43
553 563 1.136828 CACCCCCGGGAATAGATTGA 58.863 55.000 26.32 0.00 38.96 2.57
564 574 2.257409 CTTCCTCATCACACCCCCGG 62.257 65.000 0.00 0.00 0.00 5.73
569 579 2.134789 AATGGCTTCCTCATCACACC 57.865 50.000 0.00 0.00 0.00 4.16
595 605 3.434940 AAGGAATTTTAGTGTCGGGCT 57.565 42.857 0.00 0.00 0.00 5.19
596 606 4.004982 TGTAAGGAATTTTAGTGTCGGGC 58.995 43.478 0.00 0.00 0.00 6.13
597 607 5.065988 CCATGTAAGGAATTTTAGTGTCGGG 59.934 44.000 0.00 0.00 0.00 5.14
598 608 5.448632 GCCATGTAAGGAATTTTAGTGTCGG 60.449 44.000 0.00 0.00 0.00 4.79
606 617 7.775053 TCTTACTTGCCATGTAAGGAATTTT 57.225 32.000 22.86 0.00 43.99 1.82
640 653 6.701145 TCTACAAGGAATACTCAGCACTAG 57.299 41.667 0.00 0.00 0.00 2.57
693 710 1.673033 CCCTTGATGTGACGGTGTCTC 60.673 57.143 0.00 0.00 33.15 3.36
718 735 2.903135 GTGGGATGTTTGGGGAATTTCA 59.097 45.455 0.00 0.00 0.00 2.69
719 736 2.094234 CGTGGGATGTTTGGGGAATTTC 60.094 50.000 0.00 0.00 0.00 2.17
1225 1260 9.926158 ATAACTCATAAGACTCATAAGCATCAG 57.074 33.333 0.00 0.00 0.00 2.90
1226 1261 9.702494 CATAACTCATAAGACTCATAAGCATCA 57.298 33.333 0.00 0.00 0.00 3.07
1227 1262 9.920133 TCATAACTCATAAGACTCATAAGCATC 57.080 33.333 0.00 0.00 0.00 3.91
1229 1264 9.920133 GATCATAACTCATAAGACTCATAAGCA 57.080 33.333 0.00 0.00 0.00 3.91
1230 1265 9.920133 TGATCATAACTCATAAGACTCATAAGC 57.080 33.333 0.00 0.00 0.00 3.09
1234 1269 9.018582 TCGATGATCATAACTCATAAGACTCAT 57.981 33.333 8.54 0.00 33.56 2.90
1235 1270 8.396272 TCGATGATCATAACTCATAAGACTCA 57.604 34.615 8.54 0.00 33.56 3.41
1236 1271 8.511321 ACTCGATGATCATAACTCATAAGACTC 58.489 37.037 8.54 0.00 33.56 3.36
1237 1272 8.296000 CACTCGATGATCATAACTCATAAGACT 58.704 37.037 8.54 0.00 33.56 3.24
1238 1273 8.293157 TCACTCGATGATCATAACTCATAAGAC 58.707 37.037 8.54 0.00 33.56 3.01
1239 1274 8.396272 TCACTCGATGATCATAACTCATAAGA 57.604 34.615 8.54 0.00 33.56 2.10
1332 1373 4.570663 CGTCCATCTCCGTCGGGC 62.571 72.222 12.29 0.00 0.00 6.13
1438 1479 1.589196 GAGTATGTCGGCGCAGGAC 60.589 63.158 20.14 20.14 34.99 3.85
1515 1556 4.336433 CAGTGGAAAATACAGTATGCAGGG 59.664 45.833 0.00 0.00 42.53 4.45
1516 1557 5.185454 TCAGTGGAAAATACAGTATGCAGG 58.815 41.667 0.00 0.00 42.53 4.85
1517 1558 6.741992 TTCAGTGGAAAATACAGTATGCAG 57.258 37.500 0.00 0.00 42.53 4.41
1518 1559 6.883756 TCATTCAGTGGAAAATACAGTATGCA 59.116 34.615 0.00 0.00 36.49 3.96
1519 1560 7.148255 TGTCATTCAGTGGAAAATACAGTATGC 60.148 37.037 0.00 0.00 36.49 3.14
1521 1562 8.896744 CATGTCATTCAGTGGAAAATACAGTAT 58.103 33.333 0.00 0.00 36.43 2.12
1523 1564 6.716628 ACATGTCATTCAGTGGAAAATACAGT 59.283 34.615 0.00 0.00 36.43 3.55
1524 1565 7.149569 ACATGTCATTCAGTGGAAAATACAG 57.850 36.000 0.00 0.00 36.43 2.74
1525 1566 7.523293 AACATGTCATTCAGTGGAAAATACA 57.477 32.000 0.00 0.00 36.43 2.29
1526 1567 8.081633 TCAAACATGTCATTCAGTGGAAAATAC 58.918 33.333 0.00 0.00 36.43 1.89
1527 1568 8.175925 TCAAACATGTCATTCAGTGGAAAATA 57.824 30.769 0.00 0.00 36.43 1.40
1528 1569 7.053316 TCAAACATGTCATTCAGTGGAAAAT 57.947 32.000 0.00 0.00 36.43 1.82
1529 1570 6.462552 TCAAACATGTCATTCAGTGGAAAA 57.537 33.333 0.00 0.00 36.43 2.29
1533 1574 6.144886 CACAAATCAAACATGTCATTCAGTGG 59.855 38.462 0.00 0.00 0.00 4.00
1535 1576 6.808829 ACACAAATCAAACATGTCATTCAGT 58.191 32.000 0.00 0.00 0.00 3.41
1536 1577 7.861872 TGTACACAAATCAAACATGTCATTCAG 59.138 33.333 0.00 0.00 0.00 3.02
1537 1578 7.710896 TGTACACAAATCAAACATGTCATTCA 58.289 30.769 0.00 0.00 0.00 2.57
1538 1579 8.075574 TCTGTACACAAATCAAACATGTCATTC 58.924 33.333 0.00 0.00 0.00 2.67
1539 1580 7.939782 TCTGTACACAAATCAAACATGTCATT 58.060 30.769 0.00 0.00 0.00 2.57
1540 1581 7.509141 TCTGTACACAAATCAAACATGTCAT 57.491 32.000 0.00 0.00 0.00 3.06
1541 1582 6.513230 GCTCTGTACACAAATCAAACATGTCA 60.513 38.462 0.00 0.00 0.00 3.58
1542 1583 5.853282 GCTCTGTACACAAATCAAACATGTC 59.147 40.000 0.00 0.00 0.00 3.06
1689 1749 4.704833 ATGTTGAGCCCGTGCGCT 62.705 61.111 9.73 0.00 44.33 5.92
1746 1806 0.036875 AAGAGTAGGTGCAGTTGGGC 59.963 55.000 0.00 0.00 0.00 5.36
1753 1813 1.821753 GAGCTCTGAAGAGTAGGTGCA 59.178 52.381 6.43 0.00 43.85 4.57
1755 1815 1.403679 CGGAGCTCTGAAGAGTAGGTG 59.596 57.143 18.26 0.00 43.85 4.00
2213 2283 0.098025 GATCGATCGATCCCTCTCGC 59.902 60.000 36.97 17.65 43.71 5.03
2242 2312 0.320683 GTGGTAACCCCGGTGTACAC 60.321 60.000 18.01 18.01 35.15 2.90
2244 2314 1.079888 CGTGGTAACCCCGGTGTAC 60.080 63.158 0.00 0.00 35.15 2.90
2259 2334 1.442769 ACACTAATTCAGCCAGCGTG 58.557 50.000 0.00 0.00 0.00 5.34
2271 2346 2.004583 ACGCATGCACGTACACTAAT 57.995 45.000 19.57 0.00 46.19 1.73
2321 2406 1.129326 CGAAACTCTGTGTCACGGAC 58.871 55.000 10.59 0.54 29.02 4.79
2323 2408 1.257936 CAACGAAACTCTGTGTCACGG 59.742 52.381 5.35 5.35 33.75 4.94
2324 2409 1.257936 CCAACGAAACTCTGTGTCACG 59.742 52.381 0.00 0.00 34.89 4.35
2336 2421 2.424246 GGAACTGTGAAACCCAACGAAA 59.576 45.455 0.00 0.00 34.36 3.46
2357 2442 1.069296 CAACCATGTACAAGCCACACG 60.069 52.381 0.00 0.00 0.00 4.49
2467 2552 0.802494 GCGGTTTTCATCCACGTGAT 59.198 50.000 19.30 5.87 0.00 3.06
2498 2691 1.134491 GGGAGTACTTTGGACCATCGG 60.134 57.143 0.00 0.00 0.00 4.18
2517 2710 0.672342 CTTATACACCCGGACGGAGG 59.328 60.000 13.13 6.21 37.50 4.30
2518 2711 1.336125 GACTTATACACCCGGACGGAG 59.664 57.143 13.13 6.96 37.50 4.63
2520 2713 1.105457 TGACTTATACACCCGGACGG 58.895 55.000 0.73 3.25 37.81 4.79
2521 2714 3.378339 GAATGACTTATACACCCGGACG 58.622 50.000 0.73 0.00 0.00 4.79
2523 2716 2.223876 GCGAATGACTTATACACCCGGA 60.224 50.000 0.73 0.00 0.00 5.14
2524 2717 2.132762 GCGAATGACTTATACACCCGG 58.867 52.381 0.00 0.00 0.00 5.73
2525 2718 1.784856 CGCGAATGACTTATACACCCG 59.215 52.381 0.00 0.00 0.00 5.28
2526 2719 2.817901 ACGCGAATGACTTATACACCC 58.182 47.619 15.93 0.00 0.00 4.61
2528 2721 5.970023 AGAACTACGCGAATGACTTATACAC 59.030 40.000 15.93 0.00 0.00 2.90
2530 2723 6.796072 CCTAGAACTACGCGAATGACTTATAC 59.204 42.308 15.93 0.00 0.00 1.47
2531 2724 6.484643 ACCTAGAACTACGCGAATGACTTATA 59.515 38.462 15.93 0.00 0.00 0.98
2533 2726 4.637534 ACCTAGAACTACGCGAATGACTTA 59.362 41.667 15.93 0.00 0.00 2.24
2535 2728 3.015327 ACCTAGAACTACGCGAATGACT 58.985 45.455 15.93 9.07 0.00 3.41
2536 2729 3.181503 TGACCTAGAACTACGCGAATGAC 60.182 47.826 15.93 0.66 0.00 3.06
2539 2732 3.303857 CGATGACCTAGAACTACGCGAAT 60.304 47.826 15.93 0.00 0.00 3.34
2540 2733 2.031314 CGATGACCTAGAACTACGCGAA 59.969 50.000 15.93 0.00 0.00 4.70
2541 2734 1.596260 CGATGACCTAGAACTACGCGA 59.404 52.381 15.93 0.00 0.00 5.87
2542 2735 1.596260 TCGATGACCTAGAACTACGCG 59.404 52.381 3.53 3.53 0.00 6.01
2543 2736 3.900388 ATCGATGACCTAGAACTACGC 57.100 47.619 0.00 0.00 0.00 4.42
2544 2737 7.637229 TCTTAAATCGATGACCTAGAACTACG 58.363 38.462 0.00 0.00 0.00 3.51
2545 2738 9.798994 TTTCTTAAATCGATGACCTAGAACTAC 57.201 33.333 0.00 0.00 0.00 2.73
2547 2740 9.892130 AATTTCTTAAATCGATGACCTAGAACT 57.108 29.630 0.00 0.00 0.00 3.01
2590 2783 9.832445 GGAAATCTAGTGGTATACTTTTCATGA 57.168 33.333 2.25 0.00 40.89 3.07
2591 2784 9.613428 TGGAAATCTAGTGGTATACTTTTCATG 57.387 33.333 2.25 0.00 40.89 3.07
2592 2785 9.614792 GTGGAAATCTAGTGGTATACTTTTCAT 57.385 33.333 2.25 0.00 40.89 2.57
2593 2786 8.598916 TGTGGAAATCTAGTGGTATACTTTTCA 58.401 33.333 2.25 0.00 40.89 2.69
2594 2787 8.880750 GTGTGGAAATCTAGTGGTATACTTTTC 58.119 37.037 2.25 0.00 40.89 2.29
2595 2788 7.548075 CGTGTGGAAATCTAGTGGTATACTTTT 59.452 37.037 2.25 0.00 40.89 2.27
2596 2789 7.039882 CGTGTGGAAATCTAGTGGTATACTTT 58.960 38.462 2.25 0.00 40.89 2.66
2597 2790 6.406624 CCGTGTGGAAATCTAGTGGTATACTT 60.407 42.308 2.25 0.00 37.99 2.24
2598 2791 5.068723 CCGTGTGGAAATCTAGTGGTATACT 59.931 44.000 2.25 0.00 39.66 2.12
2599 2792 5.068198 TCCGTGTGGAAATCTAGTGGTATAC 59.932 44.000 0.00 0.00 42.85 1.47
2600 2793 5.202765 TCCGTGTGGAAATCTAGTGGTATA 58.797 41.667 0.00 0.00 42.85 1.47
2601 2794 4.028131 TCCGTGTGGAAATCTAGTGGTAT 58.972 43.478 0.00 0.00 42.85 2.73
2602 2795 3.433343 TCCGTGTGGAAATCTAGTGGTA 58.567 45.455 0.00 0.00 42.85 3.25
2603 2796 2.253610 TCCGTGTGGAAATCTAGTGGT 58.746 47.619 0.00 0.00 42.85 4.16
2657 2850 9.337396 AGTCGGAAACAATCTAAATATGCATTA 57.663 29.630 3.54 0.00 0.00 1.90
2658 2851 8.131100 CAGTCGGAAACAATCTAAATATGCATT 58.869 33.333 3.54 0.00 0.00 3.56
2659 2852 7.283127 ACAGTCGGAAACAATCTAAATATGCAT 59.717 33.333 3.79 3.79 0.00 3.96
2660 2853 6.597672 ACAGTCGGAAACAATCTAAATATGCA 59.402 34.615 0.00 0.00 0.00 3.96
2661 2854 7.016361 ACAGTCGGAAACAATCTAAATATGC 57.984 36.000 0.00 0.00 0.00 3.14
2665 2858 9.893305 CTTTAAACAGTCGGAAACAATCTAAAT 57.107 29.630 0.00 0.00 0.00 1.40
2666 2859 9.111613 TCTTTAAACAGTCGGAAACAATCTAAA 57.888 29.630 0.00 0.00 0.00 1.85
2667 2860 8.665643 TCTTTAAACAGTCGGAAACAATCTAA 57.334 30.769 0.00 0.00 0.00 2.10
2668 2861 8.842358 ATCTTTAAACAGTCGGAAACAATCTA 57.158 30.769 0.00 0.00 0.00 1.98
2669 2862 7.745620 ATCTTTAAACAGTCGGAAACAATCT 57.254 32.000 0.00 0.00 0.00 2.40
2670 2863 7.860872 ACAATCTTTAAACAGTCGGAAACAATC 59.139 33.333 0.00 0.00 0.00 2.67
2671 2864 7.647715 CACAATCTTTAAACAGTCGGAAACAAT 59.352 33.333 0.00 0.00 0.00 2.71
2672 2865 6.970043 CACAATCTTTAAACAGTCGGAAACAA 59.030 34.615 0.00 0.00 0.00 2.83
2673 2866 6.316640 TCACAATCTTTAAACAGTCGGAAACA 59.683 34.615 0.00 0.00 0.00 2.83
2714 2907 9.598517 AATTTTAGATTTTGAACTCTGCAACAA 57.401 25.926 0.00 0.00 0.00 2.83
2717 2910 9.912634 CCTAATTTTAGATTTTGAACTCTGCAA 57.087 29.630 0.00 0.00 32.47 4.08
2755 2948 3.286353 TGGTGAGTGCTTGATTTGTTCA 58.714 40.909 0.00 0.00 0.00 3.18
2759 2952 4.685924 ACTTTTGGTGAGTGCTTGATTTG 58.314 39.130 0.00 0.00 0.00 2.32
2865 3092 8.826710 TGAAGTATATTTCAATTAGCTTCCACG 58.173 33.333 8.12 0.00 34.32 4.94
2886 3113 6.870965 TGTGCACACTTTAAAACAATTGAAGT 59.129 30.769 17.42 8.02 0.00 3.01
2913 3140 6.040247 GGCGGACTTGGAAATAAAATAAAGG 58.960 40.000 0.00 0.00 0.00 3.11
2917 3144 3.065648 GCGGCGGACTTGGAAATAAAATA 59.934 43.478 9.78 0.00 0.00 1.40
2927 3154 1.714899 CCAATAAGCGGCGGACTTGG 61.715 60.000 9.78 10.61 0.00 3.61
2928 3155 1.721487 CCAATAAGCGGCGGACTTG 59.279 57.895 9.78 0.00 0.00 3.16
2930 3157 2.513897 GCCAATAAGCGGCGGACT 60.514 61.111 9.78 0.00 40.35 3.85
2967 3194 9.095065 CGACATAGTACTAGCCAATAAGTTTTT 57.905 33.333 8.85 0.00 0.00 1.94
2968 3195 8.255905 ACGACATAGTACTAGCCAATAAGTTTT 58.744 33.333 8.85 0.00 0.00 2.43
2969 3196 7.779073 ACGACATAGTACTAGCCAATAAGTTT 58.221 34.615 8.85 0.00 0.00 2.66
2970 3197 7.344095 ACGACATAGTACTAGCCAATAAGTT 57.656 36.000 8.85 0.00 0.00 2.66
2971 3198 6.956202 ACGACATAGTACTAGCCAATAAGT 57.044 37.500 8.85 0.00 0.00 2.24
2972 3199 8.540492 CAAAACGACATAGTACTAGCCAATAAG 58.460 37.037 8.85 0.00 0.00 1.73
2973 3200 7.010738 GCAAAACGACATAGTACTAGCCAATAA 59.989 37.037 8.85 0.00 0.00 1.40
2974 3201 6.477688 GCAAAACGACATAGTACTAGCCAATA 59.522 38.462 8.85 0.00 0.00 1.90
2975 3202 5.293569 GCAAAACGACATAGTACTAGCCAAT 59.706 40.000 8.85 0.00 0.00 3.16
2976 3203 4.628333 GCAAAACGACATAGTACTAGCCAA 59.372 41.667 8.85 0.00 0.00 4.52
2977 3204 4.081862 AGCAAAACGACATAGTACTAGCCA 60.082 41.667 8.85 0.00 0.00 4.75
2978 3205 4.267928 CAGCAAAACGACATAGTACTAGCC 59.732 45.833 8.85 0.00 0.00 3.93
2979 3206 4.863131 ACAGCAAAACGACATAGTACTAGC 59.137 41.667 8.85 3.07 0.00 3.42
2980 3207 6.323266 AGACAGCAAAACGACATAGTACTAG 58.677 40.000 8.85 3.62 0.00 2.57
2988 3215 5.614668 CGTTCATAAGACAGCAAAACGACAT 60.615 40.000 0.00 0.00 40.10 3.06
2999 3226 6.456988 GCAGGTAAATTCCGTTCATAAGACAG 60.457 42.308 0.00 0.00 0.00 3.51
3011 3238 2.727916 GCACTTTCGCAGGTAAATTCCG 60.728 50.000 0.00 0.00 0.00 4.30
3016 3243 5.220777 GCATAATAGCACTTTCGCAGGTAAA 60.221 40.000 0.00 0.00 0.00 2.01
3021 3248 3.059325 GGAGCATAATAGCACTTTCGCAG 60.059 47.826 0.00 0.00 36.85 5.18
3024 3251 2.476619 CGGGAGCATAATAGCACTTTCG 59.523 50.000 0.00 0.00 36.85 3.46
3025 3252 3.728845 TCGGGAGCATAATAGCACTTTC 58.271 45.455 0.00 0.00 36.85 2.62
3027 3254 3.393089 CTCGGGAGCATAATAGCACTT 57.607 47.619 0.00 0.00 36.85 3.16
3040 3267 4.308526 AGCATTTGTGCTCGGGAG 57.691 55.556 0.00 0.00 42.12 4.30
3048 3275 6.673154 TCTCAGATAACATGAGCATTTGTG 57.327 37.500 0.00 0.00 43.20 3.33
3049 3276 6.827251 ACATCTCAGATAACATGAGCATTTGT 59.173 34.615 0.00 0.00 43.20 2.83
3050 3277 7.260558 ACATCTCAGATAACATGAGCATTTG 57.739 36.000 0.00 0.00 43.20 2.32
3051 3278 7.254692 CGAACATCTCAGATAACATGAGCATTT 60.255 37.037 0.00 0.00 43.20 2.32
3052 3279 6.202379 CGAACATCTCAGATAACATGAGCATT 59.798 38.462 0.00 0.00 43.20 3.56
3053 3280 5.695363 CGAACATCTCAGATAACATGAGCAT 59.305 40.000 0.00 0.00 43.20 3.79
3055 3282 5.046529 ACGAACATCTCAGATAACATGAGC 58.953 41.667 0.00 0.00 43.20 4.26
3056 3283 6.199908 GGAACGAACATCTCAGATAACATGAG 59.800 42.308 0.00 0.00 44.57 2.90
3057 3284 6.042777 GGAACGAACATCTCAGATAACATGA 58.957 40.000 0.00 0.00 0.00 3.07
3058 3285 5.235186 GGGAACGAACATCTCAGATAACATG 59.765 44.000 0.00 0.00 0.00 3.21
3059 3286 5.129485 AGGGAACGAACATCTCAGATAACAT 59.871 40.000 0.00 0.00 0.00 2.71
3061 3288 5.012328 AGGGAACGAACATCTCAGATAAC 57.988 43.478 0.00 0.00 0.00 1.89
3062 3289 4.956700 AGAGGGAACGAACATCTCAGATAA 59.043 41.667 0.00 0.00 0.00 1.75
3063 3290 4.339530 CAGAGGGAACGAACATCTCAGATA 59.660 45.833 0.00 0.00 0.00 1.98
3065 3292 2.493675 CAGAGGGAACGAACATCTCAGA 59.506 50.000 0.00 0.00 0.00 3.27
3066 3293 2.493675 TCAGAGGGAACGAACATCTCAG 59.506 50.000 0.00 0.00 0.00 3.35
3067 3294 2.493675 CTCAGAGGGAACGAACATCTCA 59.506 50.000 0.00 0.00 0.00 3.27
3068 3295 2.755655 TCTCAGAGGGAACGAACATCTC 59.244 50.000 0.00 0.00 0.00 2.75
3069 3296 2.808919 TCTCAGAGGGAACGAACATCT 58.191 47.619 0.00 0.00 0.00 2.90
3070 3297 3.810310 ATCTCAGAGGGAACGAACATC 57.190 47.619 0.00 0.00 0.00 3.06
3071 3298 3.515502 TGAATCTCAGAGGGAACGAACAT 59.484 43.478 0.00 0.00 0.00 2.71
3073 3300 3.254892 GTGAATCTCAGAGGGAACGAAC 58.745 50.000 0.00 0.00 0.00 3.95
3074 3301 2.897326 TGTGAATCTCAGAGGGAACGAA 59.103 45.455 0.00 0.00 0.00 3.85
3076 3303 2.232452 AGTGTGAATCTCAGAGGGAACG 59.768 50.000 0.00 0.00 0.00 3.95
3077 3304 3.594134 CAGTGTGAATCTCAGAGGGAAC 58.406 50.000 0.00 0.00 0.00 3.62
3080 3307 1.406614 GGCAGTGTGAATCTCAGAGGG 60.407 57.143 0.00 0.00 0.00 4.30
3082 3309 2.028294 AGTGGCAGTGTGAATCTCAGAG 60.028 50.000 0.00 0.00 0.00 3.35
3083 3310 1.973515 AGTGGCAGTGTGAATCTCAGA 59.026 47.619 0.00 0.00 0.00 3.27
3084 3311 2.344950 GAGTGGCAGTGTGAATCTCAG 58.655 52.381 0.00 0.00 0.00 3.35
3085 3312 1.337167 CGAGTGGCAGTGTGAATCTCA 60.337 52.381 0.00 0.00 0.00 3.27
3086 3313 1.337260 ACGAGTGGCAGTGTGAATCTC 60.337 52.381 0.00 0.00 0.00 2.75
3090 6333 2.831685 AATACGAGTGGCAGTGTGAA 57.168 45.000 0.00 0.00 0.00 3.18
3100 6343 5.277011 CCACATACATGCAGAAATACGAGTG 60.277 44.000 0.00 0.00 0.00 3.51
3101 6344 4.811024 CCACATACATGCAGAAATACGAGT 59.189 41.667 0.00 0.00 0.00 4.18
3103 6346 3.559655 GCCACATACATGCAGAAATACGA 59.440 43.478 0.00 0.00 0.00 3.43
3104 6347 3.312146 TGCCACATACATGCAGAAATACG 59.688 43.478 0.00 0.00 0.00 3.06
3105 6348 4.898829 TGCCACATACATGCAGAAATAC 57.101 40.909 0.00 0.00 0.00 1.89
3112 6355 3.843893 ATACTCTGCCACATACATGCA 57.156 42.857 0.00 0.00 0.00 3.96
3117 6360 9.653287 TGCTTATTAATATACTCTGCCACATAC 57.347 33.333 0.00 0.00 0.00 2.39
3119 6362 8.156820 TGTGCTTATTAATATACTCTGCCACAT 58.843 33.333 0.00 0.00 0.00 3.21
3121 6364 7.657761 ACTGTGCTTATTAATATACTCTGCCAC 59.342 37.037 0.00 0.00 0.00 5.01
3122 6365 7.735917 ACTGTGCTTATTAATATACTCTGCCA 58.264 34.615 0.00 0.00 0.00 4.92
3124 6367 8.428536 CGAACTGTGCTTATTAATATACTCTGC 58.571 37.037 0.00 0.00 0.00 4.26
3126 6369 9.900710 CTCGAACTGTGCTTATTAATATACTCT 57.099 33.333 0.00 0.00 0.00 3.24
3127 6370 9.680315 ACTCGAACTGTGCTTATTAATATACTC 57.320 33.333 0.00 0.00 0.00 2.59
3128 6371 9.464714 CACTCGAACTGTGCTTATTAATATACT 57.535 33.333 0.00 0.00 0.00 2.12
3129 6372 8.700644 CCACTCGAACTGTGCTTATTAATATAC 58.299 37.037 0.00 0.00 34.38 1.47
3130 6373 7.384115 GCCACTCGAACTGTGCTTATTAATATA 59.616 37.037 0.00 0.00 34.38 0.86
3131 6374 6.202954 GCCACTCGAACTGTGCTTATTAATAT 59.797 38.462 0.00 0.00 34.38 1.28
3132 6375 5.522460 GCCACTCGAACTGTGCTTATTAATA 59.478 40.000 0.00 0.00 34.38 0.98
3133 6376 4.332819 GCCACTCGAACTGTGCTTATTAAT 59.667 41.667 0.00 0.00 34.38 1.40
3134 6377 3.682858 GCCACTCGAACTGTGCTTATTAA 59.317 43.478 0.00 0.00 34.38 1.40
3135 6378 3.259064 GCCACTCGAACTGTGCTTATTA 58.741 45.455 0.00 0.00 34.38 0.98
3137 6380 1.676014 GGCCACTCGAACTGTGCTTAT 60.676 52.381 0.00 0.00 34.38 1.73
3139 6382 1.598130 GGCCACTCGAACTGTGCTT 60.598 57.895 0.00 0.00 34.38 3.91
3140 6383 2.031163 GGCCACTCGAACTGTGCT 59.969 61.111 0.00 0.00 34.38 4.40
3142 6385 1.961277 GTGGGCCACTCGAACTGTG 60.961 63.158 29.22 0.00 35.39 3.66
3143 6386 2.426023 GTGGGCCACTCGAACTGT 59.574 61.111 29.22 0.00 0.00 3.55
3145 6388 4.681978 GCGTGGGCCACTCGAACT 62.682 66.667 32.28 0.00 38.27 3.01
3155 6398 0.320771 ATTATCTGATCGGCGTGGGC 60.321 55.000 6.85 0.00 38.90 5.36
3156 6399 2.169832 AATTATCTGATCGGCGTGGG 57.830 50.000 6.85 0.00 0.00 4.61
3157 6400 4.436050 GCAATAATTATCTGATCGGCGTGG 60.436 45.833 6.85 0.00 0.00 4.94
3158 6401 4.152223 TGCAATAATTATCTGATCGGCGTG 59.848 41.667 6.85 0.00 0.00 5.34
3159 6402 4.314961 TGCAATAATTATCTGATCGGCGT 58.685 39.130 6.85 0.00 0.00 5.68
3160 6403 4.726021 GCTGCAATAATTATCTGATCGGCG 60.726 45.833 0.00 0.00 0.00 6.46
3161 6404 4.437930 GGCTGCAATAATTATCTGATCGGC 60.438 45.833 0.50 3.70 0.00 5.54
3164 6407 6.192234 CAGGGCTGCAATAATTATCTGATC 57.808 41.667 0.50 0.00 0.00 2.92
3180 6423 2.238847 TAGCTGTAACGGCAGGGCTG 62.239 60.000 0.00 0.00 38.37 4.85
3181 6424 1.987855 TAGCTGTAACGGCAGGGCT 60.988 57.895 0.00 0.00 38.37 5.19
3183 6426 0.178068 ATGTAGCTGTAACGGCAGGG 59.822 55.000 0.00 0.00 38.37 4.45
3184 6427 1.571919 GATGTAGCTGTAACGGCAGG 58.428 55.000 0.00 0.00 38.37 4.85
3187 6430 0.874607 CCGGATGTAGCTGTAACGGC 60.875 60.000 0.00 0.00 35.73 5.68
3189 6432 1.404391 AGACCGGATGTAGCTGTAACG 59.596 52.381 9.46 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.