Multiple sequence alignment - TraesCS5A01G400300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G400300 chr5A 100.000 3801 0 0 1 3801 593243595 593239795 0.000000e+00 7020.0
1 TraesCS5A01G400300 chr5A 78.469 209 27 13 2948 3148 520586707 520586905 1.850000e-23 121.0
2 TraesCS5A01G400300 chr5D 89.357 1898 90 39 901 2759 473487427 473485603 0.000000e+00 2283.0
3 TraesCS5A01G400300 chr5D 91.586 927 61 10 2887 3801 473485605 473484684 0.000000e+00 1264.0
4 TraesCS5A01G400300 chr5D 89.661 619 36 13 123 719 473488034 473487422 0.000000e+00 763.0
5 TraesCS5A01G400300 chr5D 83.333 144 12 2 2755 2886 50829874 50830017 5.160000e-24 122.0
6 TraesCS5A01G400300 chr5D 97.778 45 1 0 1738 1782 90687338 90687294 1.130000e-10 78.7
7 TraesCS5A01G400300 chr5B 89.387 1828 97 42 901 2692 580740933 580739167 0.000000e+00 2211.0
8 TraesCS5A01G400300 chr5B 89.069 741 50 16 1 719 580741659 580740928 0.000000e+00 891.0
9 TraesCS5A01G400300 chr5B 88.889 531 39 8 2887 3398 580739065 580738536 1.490000e-178 636.0
10 TraesCS5A01G400300 chr5B 93.194 191 12 1 717 907 584167044 584166855 2.890000e-71 279.0
11 TraesCS5A01G400300 chr5B 93.583 187 10 2 718 904 610350072 610350256 1.040000e-70 278.0
12 TraesCS5A01G400300 chr5B 94.059 101 3 1 2662 2759 580739163 580739063 2.370000e-32 150.0
13 TraesCS5A01G400300 chr5B 87.234 141 6 2 2759 2887 704507498 704507638 2.370000e-32 150.0
14 TraesCS5A01G400300 chr6A 94.737 190 8 2 717 906 531408835 531408648 1.030000e-75 294.0
15 TraesCS5A01G400300 chr6A 85.526 152 10 2 2750 2889 542327132 542327283 8.510000e-32 148.0
16 TraesCS5A01G400300 chr3A 94.624 186 9 1 717 902 163792470 163792654 1.730000e-73 287.0
17 TraesCS5A01G400300 chr3A 86.897 145 7 2 2757 2889 607461868 607461724 6.580000e-33 152.0
18 TraesCS5A01G400300 chr1B 93.750 192 10 2 713 904 301635899 301635710 1.730000e-73 287.0
19 TraesCS5A01G400300 chr3B 93.651 189 10 2 718 906 131528522 131528336 8.040000e-72 281.0
20 TraesCS5A01G400300 chr3B 93.229 192 10 3 715 905 765656449 765656638 2.890000e-71 279.0
21 TraesCS5A01G400300 chr3B 85.235 149 10 2 2757 2893 8877066 8876918 3.960000e-30 143.0
22 TraesCS5A01G400300 chr7B 93.617 188 10 2 718 905 129963636 129963821 2.890000e-71 279.0
23 TraesCS5A01G400300 chr4A 92.821 195 10 4 715 907 710670669 710670477 2.890000e-71 279.0
24 TraesCS5A01G400300 chr6D 81.818 198 27 7 2951 3143 144066037 144066230 1.410000e-34 158.0
25 TraesCS5A01G400300 chr6D 86.111 144 8 2 2759 2890 419029930 419029787 1.100000e-30 145.0
26 TraesCS5A01G400300 chr2B 87.586 145 6 2 2757 2889 250888682 250888826 1.410000e-34 158.0
27 TraesCS5A01G400300 chr2B 84.783 138 9 2 2756 2881 461570800 461570937 1.110000e-25 128.0
28 TraesCS5A01G400300 chr1D 85.906 149 8 3 2759 2894 411320596 411320448 3.060000e-31 147.0
29 TraesCS5A01G400300 chr1D 85.417 144 9 2 2759 2890 445080183 445080040 5.120000e-29 139.0
30 TraesCS5A01G400300 chr2A 83.688 141 11 2 2759 2887 16946349 16946209 5.160000e-24 122.0
31 TraesCS5A01G400300 chr6B 78.261 184 28 10 2946 3123 686863931 686864108 1.440000e-19 108.0
32 TraesCS5A01G400300 chr1A 79.839 124 15 10 2978 3099 38740541 38740426 8.750000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G400300 chr5A 593239795 593243595 3800 True 7020.000000 7020 100.000000 1 3801 1 chr5A.!!$R1 3800
1 TraesCS5A01G400300 chr5D 473484684 473488034 3350 True 1436.666667 2283 90.201333 123 3801 3 chr5D.!!$R2 3678
2 TraesCS5A01G400300 chr5B 580738536 580741659 3123 True 972.000000 2211 90.351000 1 3398 4 chr5B.!!$R2 3397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
173 187 0.035439 GTGTGTACTGGATGGGTGGG 60.035 60.0 0.00 0.00 0.00 4.61 F
469 490 0.321034 ATCCATCCATCCATCACGCG 60.321 55.0 3.53 3.53 0.00 6.01 F
1628 1696 0.034186 TGGGGCAGAGGCTTATGTTG 60.034 55.0 0.00 0.00 40.87 3.33 F
2458 2545 0.250513 AGCCATGGAAGGAGAACGAC 59.749 55.0 18.40 0.00 0.00 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1664 0.111639 TGCCCCAAGTGTTCCTAACC 59.888 55.0 0.00 0.0 0.00 2.85 R
1907 1991 1.022903 ATCTCCCTCTTGAGGTCCCT 58.977 55.0 14.77 0.0 33.04 4.20 R
2791 2915 0.031817 CCTTGCCAATCCCCTCCAAT 60.032 55.0 0.00 0.0 0.00 3.16 R
3475 3620 0.390998 GAGAGAGAAGCCAGCACACC 60.391 60.0 0.00 0.0 0.00 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 41 2.224314 TGAATGTGCGACGCAACATTTA 59.776 40.909 31.75 28.10 41.47 1.40
41 43 2.757686 TGTGCGACGCAACATTTAAA 57.242 40.000 26.29 0.00 41.47 1.52
47 49 3.669557 GCGACGCAACATTTAAAGGATGT 60.670 43.478 16.42 0.00 39.31 3.06
50 52 3.823873 ACGCAACATTTAAAGGATGTCCA 59.176 39.130 6.90 0.00 36.76 4.02
51 53 4.279671 ACGCAACATTTAAAGGATGTCCAA 59.720 37.500 6.90 0.00 36.76 3.53
58 60 6.721208 ACATTTAAAGGATGTCCAATCAGTGT 59.279 34.615 6.90 0.00 38.89 3.55
86 97 1.300620 CGTCTGTGGGCGTTTGAGA 60.301 57.895 0.00 0.00 0.00 3.27
87 98 0.878523 CGTCTGTGGGCGTTTGAGAA 60.879 55.000 0.00 0.00 0.00 2.87
88 99 0.868406 GTCTGTGGGCGTTTGAGAAG 59.132 55.000 0.00 0.00 0.00 2.85
90 101 0.886490 CTGTGGGCGTTTGAGAAGCT 60.886 55.000 0.00 0.00 0.00 3.74
107 119 1.244019 GCTGGATTTGCAAGTCCGGT 61.244 55.000 36.38 8.51 41.90 5.28
109 121 2.432444 CTGGATTTGCAAGTCCGGTTA 58.568 47.619 31.72 17.02 37.32 2.85
119 131 3.243907 GCAAGTCCGGTTATAGATGCTCT 60.244 47.826 0.00 0.00 0.00 4.09
120 132 4.740934 GCAAGTCCGGTTATAGATGCTCTT 60.741 45.833 0.00 0.00 0.00 2.85
121 133 5.509163 GCAAGTCCGGTTATAGATGCTCTTA 60.509 44.000 0.00 0.00 0.00 2.10
151 163 5.900865 TGATAGTAACGGTATGTGTGTCA 57.099 39.130 0.00 0.00 0.00 3.58
157 171 1.411246 ACGGTATGTGTGTCAGTGTGT 59.589 47.619 0.00 0.00 0.00 3.72
173 187 0.035439 GTGTGTACTGGATGGGTGGG 60.035 60.000 0.00 0.00 0.00 4.61
180 194 4.143301 GGATGGGTGGGGCCTTCC 62.143 72.222 0.84 6.22 37.43 3.46
262 276 1.153765 GGTACCTGCCGTCCGTAAC 60.154 63.158 4.06 0.00 0.00 2.50
296 311 2.908940 ACAAGGCTGGTGCTGTGC 60.909 61.111 0.00 0.00 39.59 4.57
311 326 2.145536 CTGTGCTTGACATGCTGTACA 58.854 47.619 13.81 9.16 32.74 2.90
395 410 1.005975 GTGACGTATTGCTGTCATCGC 60.006 52.381 0.00 0.00 45.90 4.58
469 490 0.321034 ATCCATCCATCCATCACGCG 60.321 55.000 3.53 3.53 0.00 6.01
506 536 2.802247 GCAACAAGTCCAATCTTTTGCC 59.198 45.455 0.00 0.00 36.58 4.52
534 564 7.014038 TCCGTTTCAGGGATAGTAATTCTCTAC 59.986 40.741 0.00 0.00 0.00 2.59
535 565 7.014422 CCGTTTCAGGGATAGTAATTCTCTACT 59.986 40.741 0.00 0.00 36.16 2.57
536 566 8.414778 CGTTTCAGGGATAGTAATTCTCTACTT 58.585 37.037 0.00 0.00 34.03 2.24
560 590 5.019785 TCAACAGATCCATGATCTCACAG 57.980 43.478 3.66 0.00 45.03 3.66
566 596 1.208776 TCCATGATCTCACAGCCACAG 59.791 52.381 0.00 0.00 0.00 3.66
579 609 3.241493 CCACAGTCGGGCATGTAAA 57.759 52.632 0.00 0.00 0.00 2.01
596 630 4.348486 TGTAAATTATGCATGTGGGTGGT 58.652 39.130 10.16 0.00 0.00 4.16
671 705 3.437795 CGCAAGAGCAAGGCCAGG 61.438 66.667 5.01 0.00 42.27 4.45
672 706 3.756727 GCAAGAGCAAGGCCAGGC 61.757 66.667 5.01 8.27 41.58 4.85
715 752 2.496817 CTAGTCGGCCTGCAGTCC 59.503 66.667 13.81 8.69 0.00 3.85
716 753 2.037367 TAGTCGGCCTGCAGTCCT 59.963 61.111 12.76 0.00 0.00 3.85
717 754 0.752009 CTAGTCGGCCTGCAGTCCTA 60.752 60.000 12.76 0.00 0.00 2.94
718 755 0.752009 TAGTCGGCCTGCAGTCCTAG 60.752 60.000 12.76 0.00 0.00 3.02
719 756 2.759973 TCGGCCTGCAGTCCTAGG 60.760 66.667 12.76 0.82 37.14 3.02
720 757 3.077556 CGGCCTGCAGTCCTAGGT 61.078 66.667 12.76 0.00 36.44 3.08
721 758 2.586792 GGCCTGCAGTCCTAGGTG 59.413 66.667 13.81 1.32 36.44 4.00
722 759 2.586792 GCCTGCAGTCCTAGGTGG 59.413 66.667 13.81 0.58 36.44 4.61
723 760 2.294078 GCCTGCAGTCCTAGGTGGT 61.294 63.158 13.81 0.00 36.44 4.16
724 761 1.599047 CCTGCAGTCCTAGGTGGTG 59.401 63.158 13.81 6.07 37.07 4.17
725 762 1.194781 CCTGCAGTCCTAGGTGGTGT 61.195 60.000 13.81 0.00 37.07 4.16
726 763 0.687354 CTGCAGTCCTAGGTGGTGTT 59.313 55.000 9.08 0.00 37.07 3.32
727 764 1.072331 CTGCAGTCCTAGGTGGTGTTT 59.928 52.381 9.08 0.00 37.07 2.83
728 765 1.202758 TGCAGTCCTAGGTGGTGTTTG 60.203 52.381 9.08 0.00 37.07 2.93
729 766 1.202770 GCAGTCCTAGGTGGTGTTTGT 60.203 52.381 9.08 0.00 37.07 2.83
730 767 2.748465 GCAGTCCTAGGTGGTGTTTGTT 60.748 50.000 9.08 0.00 37.07 2.83
731 768 3.551846 CAGTCCTAGGTGGTGTTTGTTT 58.448 45.455 9.08 0.00 37.07 2.83
732 769 3.564225 CAGTCCTAGGTGGTGTTTGTTTC 59.436 47.826 9.08 0.00 37.07 2.78
733 770 2.882761 GTCCTAGGTGGTGTTTGTTTCC 59.117 50.000 9.08 0.00 37.07 3.13
734 771 2.510382 TCCTAGGTGGTGTTTGTTTCCA 59.490 45.455 9.08 0.00 37.07 3.53
735 772 2.884639 CCTAGGTGGTGTTTGTTTCCAG 59.115 50.000 0.00 0.00 31.54 3.86
736 773 2.818751 AGGTGGTGTTTGTTTCCAGA 57.181 45.000 0.00 0.00 31.54 3.86
737 774 2.654863 AGGTGGTGTTTGTTTCCAGAG 58.345 47.619 0.00 0.00 31.54 3.35
738 775 2.241176 AGGTGGTGTTTGTTTCCAGAGA 59.759 45.455 0.00 0.00 31.54 3.10
739 776 2.357952 GGTGGTGTTTGTTTCCAGAGAC 59.642 50.000 0.00 0.00 31.54 3.36
740 777 3.279434 GTGGTGTTTGTTTCCAGAGACT 58.721 45.455 0.00 0.00 31.54 3.24
741 778 3.694566 GTGGTGTTTGTTTCCAGAGACTT 59.305 43.478 0.00 0.00 31.54 3.01
742 779 4.157840 GTGGTGTTTGTTTCCAGAGACTTT 59.842 41.667 0.00 0.00 31.54 2.66
743 780 4.770010 TGGTGTTTGTTTCCAGAGACTTTT 59.230 37.500 0.00 0.00 0.00 2.27
744 781 5.245075 TGGTGTTTGTTTCCAGAGACTTTTT 59.755 36.000 0.00 0.00 0.00 1.94
745 782 5.576774 GGTGTTTGTTTCCAGAGACTTTTTG 59.423 40.000 0.00 0.00 0.00 2.44
746 783 5.576774 GTGTTTGTTTCCAGAGACTTTTTGG 59.423 40.000 0.00 0.00 0.00 3.28
747 784 5.245075 TGTTTGTTTCCAGAGACTTTTTGGT 59.755 36.000 2.67 0.00 33.65 3.67
748 785 4.981806 TGTTTCCAGAGACTTTTTGGTG 57.018 40.909 2.67 0.00 33.65 4.17
749 786 3.130340 TGTTTCCAGAGACTTTTTGGTGC 59.870 43.478 2.67 0.00 33.65 5.01
750 787 2.727123 TCCAGAGACTTTTTGGTGCA 57.273 45.000 0.00 0.00 33.65 4.57
751 788 2.575532 TCCAGAGACTTTTTGGTGCAG 58.424 47.619 0.00 0.00 33.65 4.41
752 789 1.610522 CCAGAGACTTTTTGGTGCAGG 59.389 52.381 0.00 0.00 0.00 4.85
753 790 1.610522 CAGAGACTTTTTGGTGCAGGG 59.389 52.381 0.00 0.00 0.00 4.45
754 791 1.494721 AGAGACTTTTTGGTGCAGGGA 59.505 47.619 0.00 0.00 0.00 4.20
755 792 1.609072 GAGACTTTTTGGTGCAGGGAC 59.391 52.381 0.00 0.00 0.00 4.46
756 793 1.215423 AGACTTTTTGGTGCAGGGACT 59.785 47.619 0.00 0.00 43.88 3.85
757 794 2.441750 AGACTTTTTGGTGCAGGGACTA 59.558 45.455 0.00 0.00 36.02 2.59
758 795 2.814336 GACTTTTTGGTGCAGGGACTAG 59.186 50.000 0.00 0.00 36.02 2.57
759 796 2.441750 ACTTTTTGGTGCAGGGACTAGA 59.558 45.455 0.00 0.00 36.02 2.43
760 797 3.117663 ACTTTTTGGTGCAGGGACTAGAA 60.118 43.478 0.00 0.00 36.02 2.10
761 798 3.586470 TTTTGGTGCAGGGACTAGAAA 57.414 42.857 0.00 0.00 36.02 2.52
762 799 3.586470 TTTGGTGCAGGGACTAGAAAA 57.414 42.857 0.00 0.00 36.02 2.29
763 800 3.586470 TTGGTGCAGGGACTAGAAAAA 57.414 42.857 0.00 0.00 36.02 1.94
764 801 3.140325 TGGTGCAGGGACTAGAAAAAG 57.860 47.619 0.00 0.00 36.02 2.27
765 802 2.441750 TGGTGCAGGGACTAGAAAAAGT 59.558 45.455 0.00 0.00 36.02 2.66
766 803 3.075148 GGTGCAGGGACTAGAAAAAGTC 58.925 50.000 0.00 0.00 44.31 3.01
776 813 6.798315 GACTAGAAAAAGTCCCTACCAAAC 57.202 41.667 0.00 0.00 40.06 2.93
777 814 5.628130 ACTAGAAAAAGTCCCTACCAAACC 58.372 41.667 0.00 0.00 0.00 3.27
778 815 4.529716 AGAAAAAGTCCCTACCAAACCA 57.470 40.909 0.00 0.00 0.00 3.67
779 816 4.874199 AGAAAAAGTCCCTACCAAACCAA 58.126 39.130 0.00 0.00 0.00 3.67
780 817 5.274015 AGAAAAAGTCCCTACCAAACCAAA 58.726 37.500 0.00 0.00 0.00 3.28
781 818 5.128171 AGAAAAAGTCCCTACCAAACCAAAC 59.872 40.000 0.00 0.00 0.00 2.93
782 819 3.673543 AAGTCCCTACCAAACCAAACA 57.326 42.857 0.00 0.00 0.00 2.83
783 820 3.223674 AGTCCCTACCAAACCAAACAG 57.776 47.619 0.00 0.00 0.00 3.16
784 821 2.158519 AGTCCCTACCAAACCAAACAGG 60.159 50.000 0.00 0.00 45.67 4.00
785 822 2.136863 TCCCTACCAAACCAAACAGGA 58.863 47.619 0.00 0.00 41.22 3.86
786 823 2.719705 TCCCTACCAAACCAAACAGGAT 59.280 45.455 0.00 0.00 41.22 3.24
787 824 2.825532 CCCTACCAAACCAAACAGGATG 59.174 50.000 0.00 0.00 46.00 3.51
788 825 2.825532 CCTACCAAACCAAACAGGATGG 59.174 50.000 8.46 8.46 46.54 3.51
789 826 1.715785 ACCAAACCAAACAGGATGGG 58.284 50.000 12.73 0.54 45.89 4.00
790 827 1.219213 ACCAAACCAAACAGGATGGGA 59.781 47.619 12.73 0.00 45.89 4.37
791 828 1.618343 CCAAACCAAACAGGATGGGAC 59.382 52.381 0.00 0.00 43.62 4.46
792 829 2.597455 CAAACCAAACAGGATGGGACT 58.403 47.619 0.00 0.00 43.62 3.85
793 830 2.965147 CAAACCAAACAGGATGGGACTT 59.035 45.455 0.00 0.00 43.62 3.01
794 831 3.328535 AACCAAACAGGATGGGACTTT 57.671 42.857 0.00 0.00 43.62 2.66
795 832 3.328535 ACCAAACAGGATGGGACTTTT 57.671 42.857 0.00 0.00 43.62 2.27
796 833 3.653164 ACCAAACAGGATGGGACTTTTT 58.347 40.909 0.00 0.00 43.62 1.94
826 863 7.859613 CTTTTTGCTAAAAGTCCTTAGAAGC 57.140 36.000 20.79 0.00 43.34 3.86
827 864 6.952773 TTTTGCTAAAAGTCCTTAGAAGCA 57.047 33.333 6.73 6.73 31.59 3.91
828 865 5.941948 TTGCTAAAAGTCCTTAGAAGCAC 57.058 39.130 9.21 0.00 31.59 4.40
829 866 4.324267 TGCTAAAAGTCCTTAGAAGCACC 58.676 43.478 6.73 0.00 31.59 5.01
830 867 4.041691 TGCTAAAAGTCCTTAGAAGCACCT 59.958 41.667 6.73 0.00 31.59 4.00
831 868 4.632251 GCTAAAAGTCCTTAGAAGCACCTC 59.368 45.833 0.00 0.00 31.59 3.85
832 869 3.704800 AAAGTCCTTAGAAGCACCTCC 57.295 47.619 0.00 0.00 0.00 4.30
833 870 2.632763 AGTCCTTAGAAGCACCTCCT 57.367 50.000 0.00 0.00 0.00 3.69
834 871 2.909217 AGTCCTTAGAAGCACCTCCTT 58.091 47.619 0.00 0.00 0.00 3.36
835 872 4.062490 AGTCCTTAGAAGCACCTCCTTA 57.938 45.455 0.00 0.00 0.00 2.69
836 873 4.426704 AGTCCTTAGAAGCACCTCCTTAA 58.573 43.478 0.00 0.00 0.00 1.85
837 874 4.468153 AGTCCTTAGAAGCACCTCCTTAAG 59.532 45.833 0.00 0.00 0.00 1.85
838 875 4.466726 GTCCTTAGAAGCACCTCCTTAAGA 59.533 45.833 3.36 0.00 0.00 2.10
839 876 4.712337 TCCTTAGAAGCACCTCCTTAAGAG 59.288 45.833 3.36 0.00 42.83 2.85
840 877 4.468153 CCTTAGAAGCACCTCCTTAAGAGT 59.532 45.833 3.36 0.00 41.47 3.24
841 878 5.394773 CCTTAGAAGCACCTCCTTAAGAGTC 60.395 48.000 3.36 0.00 41.47 3.36
842 879 3.785364 AGAAGCACCTCCTTAAGAGTCT 58.215 45.455 3.36 0.00 41.47 3.24
843 880 4.164204 AGAAGCACCTCCTTAAGAGTCTT 58.836 43.478 10.87 10.87 41.47 3.01
844 881 4.595350 AGAAGCACCTCCTTAAGAGTCTTT 59.405 41.667 11.40 0.00 41.47 2.52
845 882 4.984146 AGCACCTCCTTAAGAGTCTTTT 57.016 40.909 11.40 0.00 41.47 2.27
846 883 5.311844 AGCACCTCCTTAAGAGTCTTTTT 57.688 39.130 11.40 0.00 41.47 1.94
894 931 4.516365 GTCCGAGGACTAGAGAAACAAA 57.484 45.455 14.61 0.00 41.57 2.83
895 932 4.236147 GTCCGAGGACTAGAGAAACAAAC 58.764 47.826 14.61 0.00 41.57 2.93
896 933 3.893200 TCCGAGGACTAGAGAAACAAACA 59.107 43.478 0.00 0.00 0.00 2.83
897 934 3.988517 CCGAGGACTAGAGAAACAAACAC 59.011 47.826 0.00 0.00 0.00 3.32
898 935 3.988517 CGAGGACTAGAGAAACAAACACC 59.011 47.826 0.00 0.00 0.00 4.16
899 936 4.500887 CGAGGACTAGAGAAACAAACACCA 60.501 45.833 0.00 0.00 0.00 4.17
900 937 5.552178 GAGGACTAGAGAAACAAACACCAT 58.448 41.667 0.00 0.00 0.00 3.55
901 938 5.552178 AGGACTAGAGAAACAAACACCATC 58.448 41.667 0.00 0.00 0.00 3.51
966 1007 2.758423 CAGGCCTGGTTAAAATACCACC 59.242 50.000 26.14 0.00 43.14 4.61
967 1008 2.380590 AGGCCTGGTTAAAATACCACCA 59.619 45.455 3.11 0.00 43.14 4.17
968 1009 2.494471 GGCCTGGTTAAAATACCACCAC 59.506 50.000 0.00 0.00 43.14 4.16
1009 1050 1.477685 TTCGTGTCTTGTCCCCTCCC 61.478 60.000 0.00 0.00 0.00 4.30
1010 1051 2.955881 CGTGTCTTGTCCCCTCCCC 61.956 68.421 0.00 0.00 0.00 4.81
1011 1052 1.539124 GTGTCTTGTCCCCTCCCCT 60.539 63.158 0.00 0.00 0.00 4.79
1012 1053 1.229529 TGTCTTGTCCCCTCCCCTC 60.230 63.158 0.00 0.00 0.00 4.30
1013 1054 2.038975 TCTTGTCCCCTCCCCTCG 59.961 66.667 0.00 0.00 0.00 4.63
1042 1083 7.366847 TCTCTTTTCCTTCTCTCTTTCTTCA 57.633 36.000 0.00 0.00 0.00 3.02
1043 1084 7.441017 TCTCTTTTCCTTCTCTCTTTCTTCAG 58.559 38.462 0.00 0.00 0.00 3.02
1044 1085 7.288852 TCTCTTTTCCTTCTCTCTTTCTTCAGA 59.711 37.037 0.00 0.00 0.00 3.27
1045 1086 7.441017 TCTTTTCCTTCTCTCTTTCTTCAGAG 58.559 38.462 0.00 0.00 41.69 3.35
1046 1087 6.985653 TTTCCTTCTCTCTTTCTTCAGAGA 57.014 37.500 0.65 0.65 45.93 3.10
1054 1095 6.083098 TCTCTTTCTTCAGAGAACAGAGTG 57.917 41.667 17.61 5.74 45.28 3.51
1055 1096 5.596361 TCTCTTTCTTCAGAGAACAGAGTGT 59.404 40.000 17.61 0.00 45.28 3.55
1056 1097 5.595885 TCTTTCTTCAGAGAACAGAGTGTG 58.404 41.667 0.00 0.00 41.46 3.82
1057 1098 5.127845 TCTTTCTTCAGAGAACAGAGTGTGT 59.872 40.000 0.00 0.00 41.46 3.72
1058 1099 4.313277 TCTTCAGAGAACAGAGTGTGTG 57.687 45.455 0.00 0.00 40.26 3.82
1059 1100 3.701542 TCTTCAGAGAACAGAGTGTGTGT 59.298 43.478 0.00 0.00 40.26 3.72
1069 1114 2.228582 CAGAGTGTGTGTGAGAGAGAGG 59.771 54.545 0.00 0.00 0.00 3.69
1205 1250 2.997315 CAGGGCCGAGTGAGTGGA 60.997 66.667 0.00 0.00 0.00 4.02
1315 1362 4.162509 CCTCTCTTCTTTCCCCTTACGATT 59.837 45.833 0.00 0.00 0.00 3.34
1317 1364 5.024118 TCTCTTCTTTCCCCTTACGATTCT 58.976 41.667 0.00 0.00 0.00 2.40
1318 1365 5.127356 TCTCTTCTTTCCCCTTACGATTCTC 59.873 44.000 0.00 0.00 0.00 2.87
1358 1405 7.672738 CAATGCTCTGTTCAATCATTTTTAGC 58.327 34.615 0.00 0.00 0.00 3.09
1421 1469 5.073311 TCAGAATACAGTTACTCCAGCAC 57.927 43.478 0.00 0.00 0.00 4.40
1435 1483 1.654317 CAGCACAGAGATTCTCCTGC 58.346 55.000 19.47 19.47 35.89 4.85
1459 1507 1.318576 CACACTGTTGTTCTTCCCCC 58.681 55.000 0.00 0.00 31.66 5.40
1504 1552 2.608261 CGAATCTAGTGCCCGATTCTCC 60.608 54.545 9.48 0.00 41.95 3.71
1536 1584 1.251251 AAGCTCCAATTGTGTGGCTC 58.749 50.000 4.43 0.00 38.68 4.70
1579 1647 5.523552 TGTTCAAGTTCATATCTGTATGGCG 59.476 40.000 0.00 0.00 38.57 5.69
1581 1649 6.101650 TCAAGTTCATATCTGTATGGCGAT 57.898 37.500 0.00 0.00 38.57 4.58
1596 1664 4.301637 TGGCGATATACAGTGTAGTGTG 57.698 45.455 9.25 0.61 31.46 3.82
1602 1670 6.436261 CGATATACAGTGTAGTGTGGTTAGG 58.564 44.000 9.25 0.00 31.46 2.69
1612 1680 2.227194 GTGTGGTTAGGAACACTTGGG 58.773 52.381 0.00 0.00 42.72 4.12
1628 1696 0.034186 TGGGGCAGAGGCTTATGTTG 60.034 55.000 0.00 0.00 40.87 3.33
1631 1699 2.565841 GGGCAGAGGCTTATGTTGTAG 58.434 52.381 0.00 0.00 40.87 2.74
1783 1854 0.254178 ACCTTCAGGCAGCAGGTATG 59.746 55.000 0.00 0.00 42.42 2.39
1784 1855 0.543277 CCTTCAGGCAGCAGGTATGA 59.457 55.000 0.00 0.00 0.00 2.15
1796 1880 4.331168 CAGCAGGTATGAAGAAGCTACAAC 59.669 45.833 0.00 0.00 0.00 3.32
2227 2314 1.061253 GGAGAGCTTCTCGTCGTCG 59.939 63.158 0.00 0.00 44.28 5.12
2449 2536 1.293924 CGTGAAGCTAGCCATGGAAG 58.706 55.000 18.40 13.12 0.00 3.46
2451 2538 1.210478 GTGAAGCTAGCCATGGAAGGA 59.790 52.381 18.40 0.00 0.00 3.36
2452 2539 1.487976 TGAAGCTAGCCATGGAAGGAG 59.512 52.381 18.40 7.09 0.00 3.69
2454 2541 1.885049 AGCTAGCCATGGAAGGAGAA 58.115 50.000 18.40 0.00 0.00 2.87
2455 2542 1.488393 AGCTAGCCATGGAAGGAGAAC 59.512 52.381 18.40 0.00 0.00 3.01
2456 2543 1.808133 GCTAGCCATGGAAGGAGAACG 60.808 57.143 18.40 0.00 0.00 3.95
2458 2545 0.250513 AGCCATGGAAGGAGAACGAC 59.749 55.000 18.40 0.00 0.00 4.34
2460 2547 0.460284 CCATGGAAGGAGAACGACCG 60.460 60.000 5.56 0.00 0.00 4.79
2462 2549 2.125633 GGAAGGAGAACGACCGGC 60.126 66.667 0.00 0.00 0.00 6.13
2464 2551 4.736896 AAGGAGAACGACCGGCGC 62.737 66.667 16.48 0.00 46.04 6.53
2466 2553 4.814294 GGAGAACGACCGGCGCAT 62.814 66.667 10.83 7.39 46.04 4.73
2467 2554 3.554692 GAGAACGACCGGCGCATG 61.555 66.667 10.83 0.76 46.04 4.06
2473 2560 2.894879 GACCGGCGCATGCATGTA 60.895 61.111 26.79 0.00 45.35 2.29
2474 2561 3.168237 GACCGGCGCATGCATGTAC 62.168 63.158 26.79 18.53 45.35 2.90
2475 2562 3.952675 CCGGCGCATGCATGTACC 61.953 66.667 26.79 24.61 45.35 3.34
2476 2563 4.297891 CGGCGCATGCATGTACCG 62.298 66.667 33.08 33.08 45.35 4.02
2477 2564 3.202001 GGCGCATGCATGTACCGT 61.202 61.111 26.79 0.00 45.35 4.83
2478 2565 2.324477 GCGCATGCATGTACCGTC 59.676 61.111 26.79 14.01 42.15 4.79
2479 2566 2.620459 CGCATGCATGTACCGTCG 59.380 61.111 26.79 16.72 0.00 5.12
2480 2567 2.324477 GCATGCATGTACCGTCGC 59.676 61.111 26.79 7.09 0.00 5.19
2481 2568 3.014036 CATGCATGTACCGTCGCC 58.986 61.111 18.91 0.00 0.00 5.54
2482 2569 2.584970 ATGCATGTACCGTCGCCG 60.585 61.111 0.00 0.00 0.00 6.46
2483 2570 3.365291 ATGCATGTACCGTCGCCGT 62.365 57.895 0.00 0.00 0.00 5.68
2484 2571 3.252484 GCATGTACCGTCGCCGTC 61.252 66.667 0.00 0.00 0.00 4.79
2485 2572 2.488355 CATGTACCGTCGCCGTCT 59.512 61.111 0.00 0.00 0.00 4.18
2486 2573 1.872234 CATGTACCGTCGCCGTCTG 60.872 63.158 0.00 0.00 0.00 3.51
2487 2574 3.695022 ATGTACCGTCGCCGTCTGC 62.695 63.158 0.00 0.00 0.00 4.26
2496 2583 4.874977 GCCGTCTGCCTCGTAGCC 62.875 72.222 0.00 0.00 0.00 3.93
2498 2585 2.202623 CGTCTGCCTCGTAGCCAC 60.203 66.667 0.00 0.00 0.00 5.01
2530 2617 2.638480 TGACTCCCTGTTTGTTGAGG 57.362 50.000 0.00 0.00 0.00 3.86
2531 2618 1.239347 GACTCCCTGTTTGTTGAGGC 58.761 55.000 0.00 0.00 0.00 4.70
2539 2626 3.305813 CCTGTTTGTTGAGGCGTAGTAGA 60.306 47.826 0.00 0.00 0.00 2.59
2546 2633 5.491070 TGTTGAGGCGTAGTAGAAGTACTA 58.509 41.667 0.00 0.00 40.23 1.82
2547 2634 5.583854 TGTTGAGGCGTAGTAGAAGTACTAG 59.416 44.000 0.00 0.00 41.53 2.57
2566 2653 6.054860 ACTAGTATGTTTCTGTGCTTCCAT 57.945 37.500 0.00 0.00 0.00 3.41
2574 2661 4.890158 TTCTGTGCTTCCATCTTAGTCA 57.110 40.909 0.00 0.00 0.00 3.41
2619 2707 6.737254 ATAATTAACTTGTCGTTGAGGGTG 57.263 37.500 0.00 0.00 37.05 4.61
2627 2715 1.134788 GTCGTTGAGGGTGATGTAGGG 60.135 57.143 0.00 0.00 0.00 3.53
2657 2745 0.401395 ACAGGTGGAGAGGGGTGAAA 60.401 55.000 0.00 0.00 0.00 2.69
2658 2746 0.995024 CAGGTGGAGAGGGGTGAAAT 59.005 55.000 0.00 0.00 0.00 2.17
2659 2747 0.995024 AGGTGGAGAGGGGTGAAATG 59.005 55.000 0.00 0.00 0.00 2.32
2660 2748 0.698818 GGTGGAGAGGGGTGAAATGT 59.301 55.000 0.00 0.00 0.00 2.71
2689 2813 5.163683 GCTTTTCAGATGAAGCTAAGCATGA 60.164 40.000 18.72 0.00 41.46 3.07
2759 2883 7.228706 AGTGGGTGACTTTGTCTGTTATTTTAG 59.771 37.037 0.00 0.00 33.15 1.85
2760 2884 6.488683 TGGGTGACTTTGTCTGTTATTTTAGG 59.511 38.462 0.00 0.00 33.15 2.69
2761 2885 6.379386 GGTGACTTTGTCTGTTATTTTAGGC 58.621 40.000 0.00 0.00 33.15 3.93
2762 2886 6.206829 GGTGACTTTGTCTGTTATTTTAGGCT 59.793 38.462 0.00 0.00 33.15 4.58
2763 2887 7.255486 GGTGACTTTGTCTGTTATTTTAGGCTT 60.255 37.037 0.00 0.00 33.15 4.35
2764 2888 8.135529 GTGACTTTGTCTGTTATTTTAGGCTTT 58.864 33.333 0.00 0.00 33.15 3.51
2765 2889 8.134895 TGACTTTGTCTGTTATTTTAGGCTTTG 58.865 33.333 0.00 0.00 33.15 2.77
2766 2890 8.007405 ACTTTGTCTGTTATTTTAGGCTTTGT 57.993 30.769 0.00 0.00 0.00 2.83
2767 2891 8.474831 ACTTTGTCTGTTATTTTAGGCTTTGTT 58.525 29.630 0.00 0.00 0.00 2.83
2768 2892 8.865590 TTTGTCTGTTATTTTAGGCTTTGTTC 57.134 30.769 0.00 0.00 0.00 3.18
2769 2893 7.575414 TGTCTGTTATTTTAGGCTTTGTTCA 57.425 32.000 0.00 0.00 0.00 3.18
2770 2894 7.648142 TGTCTGTTATTTTAGGCTTTGTTCAG 58.352 34.615 0.00 0.00 0.00 3.02
2771 2895 7.284489 TGTCTGTTATTTTAGGCTTTGTTCAGT 59.716 33.333 0.00 0.00 0.00 3.41
2772 2896 8.135529 GTCTGTTATTTTAGGCTTTGTTCAGTT 58.864 33.333 0.00 0.00 0.00 3.16
2773 2897 9.344772 TCTGTTATTTTAGGCTTTGTTCAGTTA 57.655 29.630 0.00 0.00 0.00 2.24
2774 2898 9.959749 CTGTTATTTTAGGCTTTGTTCAGTTAA 57.040 29.630 0.00 0.00 0.00 2.01
2778 2902 7.833285 TTTTAGGCTTTGTTCAGTTAATCCT 57.167 32.000 0.00 0.00 0.00 3.24
2779 2903 7.448748 TTTAGGCTTTGTTCAGTTAATCCTC 57.551 36.000 0.00 0.00 0.00 3.71
2780 2904 5.248380 AGGCTTTGTTCAGTTAATCCTCT 57.752 39.130 0.00 0.00 0.00 3.69
2781 2905 5.635120 AGGCTTTGTTCAGTTAATCCTCTT 58.365 37.500 0.00 0.00 0.00 2.85
2782 2906 5.707764 AGGCTTTGTTCAGTTAATCCTCTTC 59.292 40.000 0.00 0.00 0.00 2.87
2783 2907 5.106118 GGCTTTGTTCAGTTAATCCTCTTCC 60.106 44.000 0.00 0.00 0.00 3.46
2784 2908 5.106118 GCTTTGTTCAGTTAATCCTCTTCCC 60.106 44.000 0.00 0.00 0.00 3.97
2785 2909 5.576563 TTGTTCAGTTAATCCTCTTCCCA 57.423 39.130 0.00 0.00 0.00 4.37
2786 2910 5.576563 TGTTCAGTTAATCCTCTTCCCAA 57.423 39.130 0.00 0.00 0.00 4.12
2787 2911 5.947663 TGTTCAGTTAATCCTCTTCCCAAA 58.052 37.500 0.00 0.00 0.00 3.28
2788 2912 6.369629 TGTTCAGTTAATCCTCTTCCCAAAA 58.630 36.000 0.00 0.00 0.00 2.44
2789 2913 6.490040 TGTTCAGTTAATCCTCTTCCCAAAAG 59.510 38.462 0.00 0.00 0.00 2.27
2790 2914 5.570320 TCAGTTAATCCTCTTCCCAAAAGG 58.430 41.667 0.00 0.00 0.00 3.11
2791 2915 5.312178 TCAGTTAATCCTCTTCCCAAAAGGA 59.688 40.000 0.00 0.00 45.68 3.36
2795 2919 3.456380 TCCTCTTCCCAAAAGGATTGG 57.544 47.619 0.15 0.15 46.94 3.16
2796 2920 2.993146 TCCTCTTCCCAAAAGGATTGGA 59.007 45.455 8.75 0.00 46.94 3.53
2797 2921 3.010584 TCCTCTTCCCAAAAGGATTGGAG 59.989 47.826 8.75 0.00 46.94 3.86
2798 2922 3.359950 CTCTTCCCAAAAGGATTGGAGG 58.640 50.000 8.75 0.00 46.94 4.30
2799 2923 2.042979 TCTTCCCAAAAGGATTGGAGGG 59.957 50.000 8.75 0.00 46.94 4.30
2800 2924 0.709992 TCCCAAAAGGATTGGAGGGG 59.290 55.000 8.75 0.00 40.93 4.79
2801 2925 0.709992 CCCAAAAGGATTGGAGGGGA 59.290 55.000 8.75 0.00 42.06 4.81
2802 2926 1.291939 CCCAAAAGGATTGGAGGGGAT 59.708 52.381 8.75 0.00 42.06 3.85
2803 2927 2.293118 CCCAAAAGGATTGGAGGGGATT 60.293 50.000 8.75 0.00 42.06 3.01
2804 2928 2.767960 CCAAAAGGATTGGAGGGGATTG 59.232 50.000 0.87 0.00 42.06 2.67
2805 2929 2.767960 CAAAAGGATTGGAGGGGATTGG 59.232 50.000 0.00 0.00 0.00 3.16
2806 2930 0.262876 AAGGATTGGAGGGGATTGGC 59.737 55.000 0.00 0.00 0.00 4.52
2807 2931 0.925720 AGGATTGGAGGGGATTGGCA 60.926 55.000 0.00 0.00 0.00 4.92
2808 2932 0.032217 GGATTGGAGGGGATTGGCAA 60.032 55.000 0.68 0.68 0.00 4.52
2809 2933 1.406903 GATTGGAGGGGATTGGCAAG 58.593 55.000 5.96 0.00 0.00 4.01
2810 2934 0.031817 ATTGGAGGGGATTGGCAAGG 60.032 55.000 5.96 0.00 0.00 3.61
2811 2935 1.145900 TTGGAGGGGATTGGCAAGGA 61.146 55.000 5.96 0.00 0.00 3.36
2812 2936 0.925720 TGGAGGGGATTGGCAAGGAT 60.926 55.000 5.96 0.00 0.00 3.24
2813 2937 0.262876 GGAGGGGATTGGCAAGGATT 59.737 55.000 5.96 0.00 0.00 3.01
2829 2953 6.254281 CAAGGATTGGTTCGTATTTTGACT 57.746 37.500 0.00 0.00 43.94 3.41
2830 2954 6.677913 CAAGGATTGGTTCGTATTTTGACTT 58.322 36.000 0.00 0.00 43.94 3.01
2831 2955 6.894339 AGGATTGGTTCGTATTTTGACTTT 57.106 33.333 0.00 0.00 0.00 2.66
2832 2956 7.989416 AGGATTGGTTCGTATTTTGACTTTA 57.011 32.000 0.00 0.00 0.00 1.85
2833 2957 8.575649 AGGATTGGTTCGTATTTTGACTTTAT 57.424 30.769 0.00 0.00 0.00 1.40
2834 2958 8.674607 AGGATTGGTTCGTATTTTGACTTTATC 58.325 33.333 0.00 0.00 0.00 1.75
2835 2959 7.913821 GGATTGGTTCGTATTTTGACTTTATCC 59.086 37.037 0.00 0.00 0.00 2.59
2836 2960 6.746745 TGGTTCGTATTTTGACTTTATCCC 57.253 37.500 0.00 0.00 0.00 3.85
2837 2961 5.648960 TGGTTCGTATTTTGACTTTATCCCC 59.351 40.000 0.00 0.00 0.00 4.81
2838 2962 5.066893 GGTTCGTATTTTGACTTTATCCCCC 59.933 44.000 0.00 0.00 0.00 5.40
2839 2963 5.703730 TCGTATTTTGACTTTATCCCCCT 57.296 39.130 0.00 0.00 0.00 4.79
2840 2964 5.677567 TCGTATTTTGACTTTATCCCCCTC 58.322 41.667 0.00 0.00 0.00 4.30
2841 2965 5.190132 TCGTATTTTGACTTTATCCCCCTCA 59.810 40.000 0.00 0.00 0.00 3.86
2842 2966 5.883673 CGTATTTTGACTTTATCCCCCTCAA 59.116 40.000 0.00 0.00 0.00 3.02
2843 2967 6.376018 CGTATTTTGACTTTATCCCCCTCAAA 59.624 38.462 0.00 0.00 0.00 2.69
2844 2968 6.605471 ATTTTGACTTTATCCCCCTCAAAC 57.395 37.500 0.00 0.00 32.06 2.93
2845 2969 3.732048 TGACTTTATCCCCCTCAAACC 57.268 47.619 0.00 0.00 0.00 3.27
2846 2970 2.310647 TGACTTTATCCCCCTCAAACCC 59.689 50.000 0.00 0.00 0.00 4.11
2847 2971 1.644337 ACTTTATCCCCCTCAAACCCC 59.356 52.381 0.00 0.00 0.00 4.95
2848 2972 1.930204 CTTTATCCCCCTCAAACCCCT 59.070 52.381 0.00 0.00 0.00 4.79
2849 2973 2.084121 TTATCCCCCTCAAACCCCTT 57.916 50.000 0.00 0.00 0.00 3.95
2850 2974 1.603634 TATCCCCCTCAAACCCCTTC 58.396 55.000 0.00 0.00 0.00 3.46
2851 2975 0.479589 ATCCCCCTCAAACCCCTTCA 60.480 55.000 0.00 0.00 0.00 3.02
2852 2976 0.703056 TCCCCCTCAAACCCCTTCAA 60.703 55.000 0.00 0.00 0.00 2.69
2853 2977 0.413434 CCCCCTCAAACCCCTTCAAT 59.587 55.000 0.00 0.00 0.00 2.57
2854 2978 1.619704 CCCCCTCAAACCCCTTCAATC 60.620 57.143 0.00 0.00 0.00 2.67
2855 2979 1.619704 CCCCTCAAACCCCTTCAATCC 60.620 57.143 0.00 0.00 0.00 3.01
2856 2980 1.077005 CCCTCAAACCCCTTCAATCCA 59.923 52.381 0.00 0.00 0.00 3.41
2857 2981 2.171003 CCTCAAACCCCTTCAATCCAC 58.829 52.381 0.00 0.00 0.00 4.02
2858 2982 2.225117 CCTCAAACCCCTTCAATCCACT 60.225 50.000 0.00 0.00 0.00 4.00
2859 2983 3.010138 CCTCAAACCCCTTCAATCCACTA 59.990 47.826 0.00 0.00 0.00 2.74
2860 2984 4.265073 CTCAAACCCCTTCAATCCACTAG 58.735 47.826 0.00 0.00 0.00 2.57
2861 2985 3.010138 TCAAACCCCTTCAATCCACTAGG 59.990 47.826 0.00 0.00 0.00 3.02
2874 2998 4.054780 TCCACTAGGATTCATACGCAAC 57.945 45.455 0.00 0.00 39.61 4.17
2875 2999 3.131396 CCACTAGGATTCATACGCAACC 58.869 50.000 0.00 0.00 36.89 3.77
2876 3000 2.794910 CACTAGGATTCATACGCAACCG 59.205 50.000 0.00 0.00 41.14 4.44
2877 3001 6.758911 CCACTAGGATTCATACGCAACCGT 62.759 50.000 0.00 0.00 44.17 4.83
2878 3002 7.452559 CCACTAGGATTCATACGCAACCGTA 62.453 48.000 0.00 0.00 45.33 4.02
2886 3010 2.358247 CGCAACCGTACAAGGCCT 60.358 61.111 0.00 0.00 33.69 5.19
2887 3011 1.964373 CGCAACCGTACAAGGCCTT 60.964 57.895 13.78 13.78 33.69 4.35
2888 3012 0.671163 CGCAACCGTACAAGGCCTTA 60.671 55.000 20.00 0.00 33.69 2.69
2914 3038 3.312697 GGCAGTCTTTCGGTATGAAATCC 59.687 47.826 0.00 0.00 45.21 3.01
2944 3068 7.042051 TCACAAGAACTAAGAACAGAATTTCCG 60.042 37.037 0.00 0.00 0.00 4.30
3074 3199 5.049680 CGTGGGTTTCATTATATACCTGTGC 60.050 44.000 0.00 0.00 0.00 4.57
3087 3212 1.230635 CCTGTGCTCAGTTTCGTGGG 61.231 60.000 14.31 0.00 39.82 4.61
3099 3224 0.331278 TTCGTGGGAAATGGATGCCT 59.669 50.000 0.00 0.00 0.00 4.75
3101 3226 0.680921 CGTGGGAAATGGATGCCTGT 60.681 55.000 0.00 0.00 0.00 4.00
3155 3281 6.309712 TCCTATGTATAGAAAAGACGACGG 57.690 41.667 0.00 0.00 32.05 4.79
3188 3316 4.674101 CGCGACAAAATTGAACATGGGTAT 60.674 41.667 0.00 0.00 0.00 2.73
3207 3343 5.339530 GGGTATCCCAGATTTGATATCCCAG 60.340 48.000 0.00 0.00 44.65 4.45
3237 3373 7.375053 TCAGAATTCTTTAAAATTTCCCCGTG 58.625 34.615 4.86 0.00 0.00 4.94
3310 3455 4.820173 TCTCGTTTCCCTTTTCCTTTCTTC 59.180 41.667 0.00 0.00 0.00 2.87
3314 3459 3.868619 TCCCTTTTCCTTTCTTCGGAA 57.131 42.857 0.00 0.00 38.71 4.30
3398 3543 8.094548 ACATCTTAGTTGTGCATGTAACTCTTA 58.905 33.333 14.61 5.24 38.11 2.10
3407 3552 2.610438 TGTAACTCTTAGGGGTCCGT 57.390 50.000 0.00 0.00 0.00 4.69
3448 3593 1.211703 TGTGGTTTGAGAGAGTGCCAA 59.788 47.619 0.00 0.00 0.00 4.52
3451 3596 2.703536 TGGTTTGAGAGAGTGCCAAGTA 59.296 45.455 0.00 0.00 0.00 2.24
3456 3601 1.929836 GAGAGAGTGCCAAGTAATGCG 59.070 52.381 0.00 0.00 0.00 4.73
3457 3602 1.276421 AGAGAGTGCCAAGTAATGCGT 59.724 47.619 0.00 0.00 0.00 5.24
3475 3620 3.705638 CTGCCGCTGTCACGTGTG 61.706 66.667 16.51 8.39 0.00 3.82
3501 3646 3.771479 TGCTGGCTTCTCTCTCTGAATTA 59.229 43.478 0.00 0.00 0.00 1.40
3544 3689 5.505173 ACGCATTTTCAGGATTTAGATGG 57.495 39.130 0.00 0.00 0.00 3.51
3587 3732 6.660887 TTTTGCTTTGTTTTTCTTAGGCTG 57.339 33.333 0.00 0.00 0.00 4.85
3598 3743 6.976934 TTTTCTTAGGCTGTGGAGATTTTT 57.023 33.333 0.00 0.00 0.00 1.94
3725 3872 9.727627 CAAAAGAAATATATGCTTCCAAGAGTC 57.272 33.333 2.58 0.00 0.00 3.36
3741 3888 3.566523 AGAGTCGTTCTCGTGAAATCAC 58.433 45.455 0.74 3.43 46.86 3.06
3754 3901 4.320421 CGTGAAATCACAGATTTGCTTCCA 60.320 41.667 13.51 0.00 46.75 3.53
3755 3902 5.620654 CGTGAAATCACAGATTTGCTTCCAT 60.621 40.000 13.51 0.00 46.75 3.41
3756 3903 6.403527 CGTGAAATCACAGATTTGCTTCCATA 60.404 38.462 13.51 0.00 46.75 2.74
3783 3930 2.011222 ACAACCGTGCTTCTCGAAAAA 58.989 42.857 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.224314 TGCGTCGCACATTCACAAATTA 59.776 40.909 17.58 0.00 31.71 1.40
13 14 0.590682 TGCGTCGCACATTCACAAAT 59.409 45.000 17.58 0.00 31.71 2.32
14 15 0.378610 TTGCGTCGCACATTCACAAA 59.621 45.000 21.61 0.00 38.71 2.83
28 30 3.823873 TGGACATCCTTTAAATGTTGCGT 59.176 39.130 0.00 0.00 37.47 5.24
39 41 4.253685 CGTACACTGATTGGACATCCTTT 58.746 43.478 0.00 0.00 39.37 3.11
41 43 2.418746 GCGTACACTGATTGGACATCCT 60.419 50.000 0.00 0.00 39.37 3.24
47 49 0.108992 GTCCGCGTACACTGATTGGA 60.109 55.000 4.92 0.00 0.00 3.53
50 52 1.804326 GCGTCCGCGTACACTGATT 60.804 57.895 4.92 0.00 40.81 2.57
51 53 2.202570 GCGTCCGCGTACACTGAT 60.203 61.111 4.92 0.00 40.81 2.90
72 74 1.148273 AGCTTCTCAAACGCCCACA 59.852 52.632 0.00 0.00 0.00 4.17
74 85 1.600636 CCAGCTTCTCAAACGCCCA 60.601 57.895 0.00 0.00 0.00 5.36
77 88 2.589014 CAAATCCAGCTTCTCAAACGC 58.411 47.619 0.00 0.00 0.00 4.84
78 89 2.030893 TGCAAATCCAGCTTCTCAAACG 60.031 45.455 0.00 0.00 0.00 3.60
86 97 0.883833 CGGACTTGCAAATCCAGCTT 59.116 50.000 25.36 0.00 34.35 3.74
87 98 0.962356 CCGGACTTGCAAATCCAGCT 60.962 55.000 25.36 0.00 34.35 4.24
88 99 1.244019 ACCGGACTTGCAAATCCAGC 61.244 55.000 25.36 0.25 34.35 4.85
90 101 2.570415 TAACCGGACTTGCAAATCCA 57.430 45.000 25.36 4.15 34.35 3.41
119 131 8.629158 ACATACCGTTACTATCAACCGTAATAA 58.371 33.333 0.00 0.00 29.91 1.40
120 132 8.075574 CACATACCGTTACTATCAACCGTAATA 58.924 37.037 0.00 0.00 29.91 0.98
121 133 6.919662 CACATACCGTTACTATCAACCGTAAT 59.080 38.462 0.00 0.00 29.91 1.89
133 145 3.319972 ACACTGACACACATACCGTTACT 59.680 43.478 0.00 0.00 0.00 2.24
151 163 1.347707 CACCCATCCAGTACACACACT 59.652 52.381 0.00 0.00 0.00 3.55
157 171 2.305607 GCCCCACCCATCCAGTACA 61.306 63.158 0.00 0.00 0.00 2.90
173 187 2.045536 CAGCAGGTGAGGAAGGCC 60.046 66.667 0.00 0.00 0.00 5.19
180 194 1.738099 GGTACGTGCAGCAGGTGAG 60.738 63.158 27.30 5.72 34.30 3.51
262 276 4.026804 GCCTTGTGTACATCTATCGTTTCG 60.027 45.833 0.00 0.00 0.00 3.46
270 284 2.354704 GCACCAGCCTTGTGTACATCTA 60.355 50.000 0.00 0.00 36.11 1.98
395 410 1.462670 GAGTGCTCCGAGAAGCTTTTG 59.537 52.381 0.00 0.00 42.94 2.44
506 536 4.957684 ATTACTATCCCTGAAACGGAGG 57.042 45.455 0.00 0.00 31.41 4.30
555 585 4.314440 GCCCGACTGTGGCTGTGA 62.314 66.667 2.12 0.00 45.70 3.58
566 596 3.980646 TGCATAATTTACATGCCCGAC 57.019 42.857 8.77 0.00 46.65 4.79
579 609 1.750332 CGGACCACCCACATGCATAAT 60.750 52.381 0.00 0.00 34.14 1.28
585 615 1.674322 GGAACGGACCACCCACATG 60.674 63.158 0.00 0.00 34.14 3.21
596 630 2.561419 CAGAGGTTGAGTAAGGAACGGA 59.439 50.000 0.00 0.00 0.00 4.69
671 705 3.620488 TCTTTCTCTCTCTCTCTCTGGC 58.380 50.000 0.00 0.00 0.00 4.85
672 706 6.595682 AGTATCTTTCTCTCTCTCTCTCTGG 58.404 44.000 0.00 0.00 0.00 3.86
715 752 3.815401 CTCTGGAAACAAACACCACCTAG 59.185 47.826 0.00 0.00 42.06 3.02
716 753 3.456644 TCTCTGGAAACAAACACCACCTA 59.543 43.478 0.00 0.00 42.06 3.08
717 754 2.241176 TCTCTGGAAACAAACACCACCT 59.759 45.455 0.00 0.00 42.06 4.00
718 755 2.357952 GTCTCTGGAAACAAACACCACC 59.642 50.000 0.00 0.00 42.06 4.61
719 756 3.279434 AGTCTCTGGAAACAAACACCAC 58.721 45.455 0.00 0.00 42.06 4.16
720 757 3.644966 AGTCTCTGGAAACAAACACCA 57.355 42.857 0.00 0.00 42.06 4.17
721 758 4.983671 AAAGTCTCTGGAAACAAACACC 57.016 40.909 0.00 0.00 42.06 4.16
722 759 5.576774 CCAAAAAGTCTCTGGAAACAAACAC 59.423 40.000 0.00 0.00 42.06 3.32
723 760 5.245075 ACCAAAAAGTCTCTGGAAACAAACA 59.755 36.000 3.25 0.00 42.06 2.83
724 761 5.576774 CACCAAAAAGTCTCTGGAAACAAAC 59.423 40.000 3.25 0.00 42.06 2.93
725 762 5.719173 CACCAAAAAGTCTCTGGAAACAAA 58.281 37.500 3.25 0.00 42.06 2.83
726 763 4.381505 GCACCAAAAAGTCTCTGGAAACAA 60.382 41.667 3.25 0.00 42.06 2.83
727 764 3.130340 GCACCAAAAAGTCTCTGGAAACA 59.870 43.478 3.25 0.00 39.59 2.83
728 765 3.130340 TGCACCAAAAAGTCTCTGGAAAC 59.870 43.478 3.25 0.00 34.16 2.78
729 766 3.360867 TGCACCAAAAAGTCTCTGGAAA 58.639 40.909 3.25 0.00 34.16 3.13
730 767 2.951642 CTGCACCAAAAAGTCTCTGGAA 59.048 45.455 3.25 0.00 34.16 3.53
731 768 2.575532 CTGCACCAAAAAGTCTCTGGA 58.424 47.619 3.25 0.00 34.16 3.86
732 769 1.610522 CCTGCACCAAAAAGTCTCTGG 59.389 52.381 0.00 0.00 36.24 3.86
733 770 1.610522 CCCTGCACCAAAAAGTCTCTG 59.389 52.381 0.00 0.00 0.00 3.35
734 771 1.494721 TCCCTGCACCAAAAAGTCTCT 59.505 47.619 0.00 0.00 0.00 3.10
735 772 1.609072 GTCCCTGCACCAAAAAGTCTC 59.391 52.381 0.00 0.00 0.00 3.36
736 773 1.215423 AGTCCCTGCACCAAAAAGTCT 59.785 47.619 0.00 0.00 0.00 3.24
737 774 1.692411 AGTCCCTGCACCAAAAAGTC 58.308 50.000 0.00 0.00 0.00 3.01
738 775 2.441750 TCTAGTCCCTGCACCAAAAAGT 59.558 45.455 0.00 0.00 0.00 2.66
739 776 3.140325 TCTAGTCCCTGCACCAAAAAG 57.860 47.619 0.00 0.00 0.00 2.27
740 777 3.586470 TTCTAGTCCCTGCACCAAAAA 57.414 42.857 0.00 0.00 0.00 1.94
741 778 3.586470 TTTCTAGTCCCTGCACCAAAA 57.414 42.857 0.00 0.00 0.00 2.44
742 779 3.586470 TTTTCTAGTCCCTGCACCAAA 57.414 42.857 0.00 0.00 0.00 3.28
743 780 3.117663 ACTTTTTCTAGTCCCTGCACCAA 60.118 43.478 0.00 0.00 0.00 3.67
744 781 2.441750 ACTTTTTCTAGTCCCTGCACCA 59.558 45.455 0.00 0.00 0.00 4.17
745 782 3.075148 GACTTTTTCTAGTCCCTGCACC 58.925 50.000 0.00 0.00 38.88 5.01
753 790 5.704515 GGTTTGGTAGGGACTTTTTCTAGTC 59.295 44.000 0.00 0.00 43.05 2.59
754 791 5.133153 TGGTTTGGTAGGGACTTTTTCTAGT 59.867 40.000 0.00 0.00 41.75 2.57
755 792 5.627135 TGGTTTGGTAGGGACTTTTTCTAG 58.373 41.667 0.00 0.00 41.75 2.43
756 793 5.649970 TGGTTTGGTAGGGACTTTTTCTA 57.350 39.130 0.00 0.00 41.75 2.10
757 794 4.529716 TGGTTTGGTAGGGACTTTTTCT 57.470 40.909 0.00 0.00 41.75 2.52
758 795 5.105269 TGTTTGGTTTGGTAGGGACTTTTTC 60.105 40.000 0.00 0.00 41.75 2.29
759 796 4.778427 TGTTTGGTTTGGTAGGGACTTTTT 59.222 37.500 0.00 0.00 41.75 1.94
760 797 4.354662 TGTTTGGTTTGGTAGGGACTTTT 58.645 39.130 0.00 0.00 41.75 2.27
761 798 3.958147 CTGTTTGGTTTGGTAGGGACTTT 59.042 43.478 0.00 0.00 41.75 2.66
762 799 3.562182 CTGTTTGGTTTGGTAGGGACTT 58.438 45.455 0.00 0.00 41.75 3.01
763 800 2.158519 CCTGTTTGGTTTGGTAGGGACT 60.159 50.000 0.00 0.00 46.37 3.85
764 801 2.158579 TCCTGTTTGGTTTGGTAGGGAC 60.159 50.000 0.00 0.00 37.07 4.46
765 802 2.136863 TCCTGTTTGGTTTGGTAGGGA 58.863 47.619 0.00 0.00 37.07 4.20
766 803 2.668144 TCCTGTTTGGTTTGGTAGGG 57.332 50.000 0.00 0.00 37.07 3.53
767 804 2.825532 CCATCCTGTTTGGTTTGGTAGG 59.174 50.000 0.00 0.00 36.29 3.18
768 805 2.825532 CCCATCCTGTTTGGTTTGGTAG 59.174 50.000 0.00 0.00 38.01 3.18
769 806 2.447429 TCCCATCCTGTTTGGTTTGGTA 59.553 45.455 0.00 0.00 38.01 3.25
770 807 1.219213 TCCCATCCTGTTTGGTTTGGT 59.781 47.619 0.00 0.00 38.01 3.67
771 808 1.618343 GTCCCATCCTGTTTGGTTTGG 59.382 52.381 0.00 0.00 38.80 3.28
772 809 2.597455 AGTCCCATCCTGTTTGGTTTG 58.403 47.619 0.00 0.00 37.07 2.93
773 810 3.328535 AAGTCCCATCCTGTTTGGTTT 57.671 42.857 0.00 0.00 37.07 3.27
774 811 3.328535 AAAGTCCCATCCTGTTTGGTT 57.671 42.857 0.00 0.00 37.07 3.67
775 812 3.328535 AAAAGTCCCATCCTGTTTGGT 57.671 42.857 0.00 0.00 37.07 3.67
803 840 7.200455 GTGCTTCTAAGGACTTTTAGCAAAAA 58.800 34.615 7.07 0.00 43.15 1.94
804 841 6.238925 GGTGCTTCTAAGGACTTTTAGCAAAA 60.239 38.462 13.12 0.00 45.42 2.44
805 842 5.240844 GGTGCTTCTAAGGACTTTTAGCAAA 59.759 40.000 13.12 0.00 45.42 3.68
806 843 4.760204 GGTGCTTCTAAGGACTTTTAGCAA 59.240 41.667 13.12 1.75 45.42 3.91
807 844 4.041691 AGGTGCTTCTAAGGACTTTTAGCA 59.958 41.667 13.12 9.74 45.42 3.49
808 845 4.580868 AGGTGCTTCTAAGGACTTTTAGC 58.419 43.478 13.12 0.00 45.42 3.09
809 846 5.046231 AGGAGGTGCTTCTAAGGACTTTTAG 60.046 44.000 13.12 0.00 45.42 1.85
810 847 4.844655 AGGAGGTGCTTCTAAGGACTTTTA 59.155 41.667 13.12 0.00 45.42 1.52
811 848 3.653352 AGGAGGTGCTTCTAAGGACTTTT 59.347 43.478 13.12 1.47 45.42 2.27
812 849 3.252351 AGGAGGTGCTTCTAAGGACTTT 58.748 45.455 13.12 3.63 45.42 2.66
813 850 2.909217 AGGAGGTGCTTCTAAGGACTT 58.091 47.619 13.12 6.52 45.42 3.01
814 851 2.632763 AGGAGGTGCTTCTAAGGACT 57.367 50.000 13.12 1.24 45.42 3.85
815 852 4.466726 TCTTAAGGAGGTGCTTCTAAGGAC 59.533 45.833 1.85 5.86 45.39 3.85
816 853 4.684724 TCTTAAGGAGGTGCTTCTAAGGA 58.315 43.478 1.85 0.00 0.00 3.36
817 854 4.468153 ACTCTTAAGGAGGTGCTTCTAAGG 59.532 45.833 1.85 0.00 45.83 2.69
818 855 5.420739 AGACTCTTAAGGAGGTGCTTCTAAG 59.579 44.000 1.85 0.00 45.83 2.18
819 856 5.334421 AGACTCTTAAGGAGGTGCTTCTAA 58.666 41.667 1.85 0.00 45.83 2.10
820 857 4.936802 AGACTCTTAAGGAGGTGCTTCTA 58.063 43.478 1.85 0.00 45.83 2.10
821 858 3.785364 AGACTCTTAAGGAGGTGCTTCT 58.215 45.455 1.85 0.00 45.83 2.85
822 859 4.545208 AAGACTCTTAAGGAGGTGCTTC 57.455 45.455 1.85 0.00 45.83 3.86
823 860 4.984146 AAAGACTCTTAAGGAGGTGCTT 57.016 40.909 1.85 2.98 45.83 3.91
824 861 4.984146 AAAAGACTCTTAAGGAGGTGCT 57.016 40.909 1.85 0.00 45.83 4.40
873 910 4.236147 GTTTGTTTCTCTAGTCCTCGGAC 58.764 47.826 8.03 8.03 44.86 4.79
874 911 3.893200 TGTTTGTTTCTCTAGTCCTCGGA 59.107 43.478 0.00 0.00 0.00 4.55
875 912 3.988517 GTGTTTGTTTCTCTAGTCCTCGG 59.011 47.826 0.00 0.00 0.00 4.63
876 913 3.988517 GGTGTTTGTTTCTCTAGTCCTCG 59.011 47.826 0.00 0.00 0.00 4.63
877 914 4.957296 TGGTGTTTGTTTCTCTAGTCCTC 58.043 43.478 0.00 0.00 0.00 3.71
878 915 5.513267 GGATGGTGTTTGTTTCTCTAGTCCT 60.513 44.000 0.00 0.00 0.00 3.85
879 916 4.695928 GGATGGTGTTTGTTTCTCTAGTCC 59.304 45.833 0.00 0.00 0.00 3.85
880 917 5.552178 AGGATGGTGTTTGTTTCTCTAGTC 58.448 41.667 0.00 0.00 0.00 2.59
881 918 5.568620 AGGATGGTGTTTGTTTCTCTAGT 57.431 39.130 0.00 0.00 0.00 2.57
882 919 6.591834 CACTAGGATGGTGTTTGTTTCTCTAG 59.408 42.308 0.00 0.00 43.23 2.43
883 920 6.464222 CACTAGGATGGTGTTTGTTTCTCTA 58.536 40.000 0.00 0.00 43.23 2.43
884 921 5.308825 CACTAGGATGGTGTTTGTTTCTCT 58.691 41.667 0.00 0.00 43.23 3.10
885 922 5.613358 CACTAGGATGGTGTTTGTTTCTC 57.387 43.478 0.00 0.00 43.23 2.87
896 933 2.758979 CAACGGAGTACACTAGGATGGT 59.241 50.000 0.00 0.00 45.00 3.55
897 934 2.481449 GCAACGGAGTACACTAGGATGG 60.481 54.545 0.00 0.00 45.00 3.51
898 935 2.427453 AGCAACGGAGTACACTAGGATG 59.573 50.000 0.00 0.00 45.00 3.51
899 936 2.736347 AGCAACGGAGTACACTAGGAT 58.264 47.619 0.00 0.00 45.00 3.24
900 937 2.211250 AGCAACGGAGTACACTAGGA 57.789 50.000 0.00 0.00 45.00 2.94
901 938 2.607187 CAAGCAACGGAGTACACTAGG 58.393 52.381 0.00 0.00 45.00 3.02
966 1007 7.621428 ATGATGTAAGATTCCTTTCACAGTG 57.379 36.000 0.00 0.00 33.49 3.66
967 1008 7.065085 CGAATGATGTAAGATTCCTTTCACAGT 59.935 37.037 0.00 0.00 33.49 3.55
968 1009 7.065085 ACGAATGATGTAAGATTCCTTTCACAG 59.935 37.037 0.00 0.00 33.49 3.66
1009 1050 0.615850 AGGAAAAGAGAAGGGCGAGG 59.384 55.000 0.00 0.00 0.00 4.63
1010 1051 2.027653 AGAAGGAAAAGAGAAGGGCGAG 60.028 50.000 0.00 0.00 0.00 5.03
1011 1052 1.978580 AGAAGGAAAAGAGAAGGGCGA 59.021 47.619 0.00 0.00 0.00 5.54
1012 1053 2.027653 AGAGAAGGAAAAGAGAAGGGCG 60.028 50.000 0.00 0.00 0.00 6.13
1013 1054 3.263170 AGAGAGAAGGAAAAGAGAAGGGC 59.737 47.826 0.00 0.00 0.00 5.19
1042 1083 3.291584 TCTCACACACACTCTGTTCTCT 58.708 45.455 0.00 0.00 0.00 3.10
1043 1084 3.316588 TCTCTCACACACACTCTGTTCTC 59.683 47.826 0.00 0.00 0.00 2.87
1044 1085 3.291584 TCTCTCACACACACTCTGTTCT 58.708 45.455 0.00 0.00 0.00 3.01
1045 1086 3.316588 TCTCTCTCACACACACTCTGTTC 59.683 47.826 0.00 0.00 0.00 3.18
1046 1087 3.291584 TCTCTCTCACACACACTCTGTT 58.708 45.455 0.00 0.00 0.00 3.16
1048 1089 2.228582 CCTCTCTCTCACACACACTCTG 59.771 54.545 0.00 0.00 0.00 3.35
1051 1092 1.145945 TCCCTCTCTCTCACACACACT 59.854 52.381 0.00 0.00 0.00 3.55
1052 1093 1.543802 CTCCCTCTCTCTCACACACAC 59.456 57.143 0.00 0.00 0.00 3.82
1053 1094 1.425448 TCTCCCTCTCTCTCACACACA 59.575 52.381 0.00 0.00 0.00 3.72
1054 1095 2.091541 CTCTCCCTCTCTCTCACACAC 58.908 57.143 0.00 0.00 0.00 3.82
1055 1096 1.005332 CCTCTCCCTCTCTCTCACACA 59.995 57.143 0.00 0.00 0.00 3.72
1056 1097 1.684869 CCCTCTCCCTCTCTCTCACAC 60.685 61.905 0.00 0.00 0.00 3.82
1057 1098 0.628522 CCCTCTCCCTCTCTCTCACA 59.371 60.000 0.00 0.00 0.00 3.58
1058 1099 0.923358 TCCCTCTCCCTCTCTCTCAC 59.077 60.000 0.00 0.00 0.00 3.51
1059 1100 1.221635 CTCCCTCTCCCTCTCTCTCA 58.778 60.000 0.00 0.00 0.00 3.27
1069 1114 2.014033 ATCCGTCCCTCTCCCTCTCC 62.014 65.000 0.00 0.00 0.00 3.71
1105 1150 6.503589 TTTCCCTTTTATACACATCAACCG 57.496 37.500 0.00 0.00 0.00 4.44
1173 1218 1.065782 GCCCTGTTCCTCTTCTCTTCC 60.066 57.143 0.00 0.00 0.00 3.46
1205 1250 0.536006 GTGCCACTGAGCTCCAACTT 60.536 55.000 12.15 0.00 0.00 2.66
1315 1362 3.622166 TTGCAGATTGATGAGCAGAGA 57.378 42.857 0.00 0.00 38.35 3.10
1317 1364 2.357952 GCATTGCAGATTGATGAGCAGA 59.642 45.455 3.15 0.00 38.35 4.26
1318 1365 2.359214 AGCATTGCAGATTGATGAGCAG 59.641 45.455 11.91 0.00 38.35 4.24
1378 1426 1.064017 AGCAAGTCACAACCCAAAGGA 60.064 47.619 0.00 0.00 36.73 3.36
1421 1469 1.134189 TGCATGGCAGGAGAATCTCTG 60.134 52.381 10.38 7.63 36.76 3.35
1435 1483 2.287788 GGAAGAACAACAGTGTGCATGG 60.288 50.000 0.00 0.00 38.27 3.66
1504 1552 1.339055 TGGAGCTTTCGAAGTGGGATG 60.339 52.381 0.00 0.00 0.00 3.51
1536 1584 7.439157 TGAACAGAAAGTGAGAATACAATGG 57.561 36.000 0.00 0.00 0.00 3.16
1579 1647 7.578310 TCCTAACCACACTACACTGTATATC 57.422 40.000 0.00 0.00 0.00 1.63
1581 1649 6.720748 TGTTCCTAACCACACTACACTGTATA 59.279 38.462 0.00 0.00 0.00 1.47
1596 1664 0.111639 TGCCCCAAGTGTTCCTAACC 59.888 55.000 0.00 0.00 0.00 2.85
1602 1670 1.973812 GCCTCTGCCCCAAGTGTTC 60.974 63.158 0.00 0.00 0.00 3.18
1612 1680 1.943340 GCTACAACATAAGCCTCTGCC 59.057 52.381 0.00 0.00 38.69 4.85
1628 1696 4.061596 GACCTGCATGGAGAAATAGCTAC 58.938 47.826 16.85 0.00 39.71 3.58
1631 1699 2.225467 GGACCTGCATGGAGAAATAGC 58.775 52.381 16.85 0.00 39.71 2.97
1783 1854 5.188327 AGCAAAAAGGTTGTAGCTTCTTC 57.812 39.130 0.00 0.00 34.42 2.87
1784 1855 5.598416 AAGCAAAAAGGTTGTAGCTTCTT 57.402 34.783 0.00 0.00 37.77 2.52
1796 1880 1.543208 GGGGAGGCAAAAGCAAAAAGG 60.543 52.381 0.00 0.00 0.00 3.11
1832 1916 1.327460 CGTACACAAATCATGAGGCCG 59.673 52.381 0.09 0.00 0.00 6.13
1907 1991 1.022903 ATCTCCCTCTTGAGGTCCCT 58.977 55.000 14.77 0.00 33.04 4.20
2227 2314 1.154450 CGTGTCAGACTCCGTCGTC 60.154 63.158 1.31 0.00 37.67 4.20
2380 2467 3.132801 GGAGAAGGCTGCTGCTGC 61.133 66.667 21.42 21.42 39.59 5.25
2381 2468 2.818714 CGGAGAAGGCTGCTGCTG 60.819 66.667 12.62 0.77 39.59 4.41
2382 2469 4.774503 GCGGAGAAGGCTGCTGCT 62.775 66.667 12.62 0.00 39.59 4.24
2449 2536 4.814294 ATGCGCCGGTCGTTCTCC 62.814 66.667 17.38 3.73 41.07 3.71
2456 2543 2.894879 TACATGCATGCGCCGGTC 60.895 61.111 26.53 0.00 37.32 4.79
2458 2545 3.952675 GGTACATGCATGCGCCGG 61.953 66.667 26.53 0.00 37.32 6.13
2460 2547 3.168237 GACGGTACATGCATGCGCC 62.168 63.158 26.53 24.43 37.32 6.53
2462 2549 2.620459 CGACGGTACATGCATGCG 59.380 61.111 26.53 22.48 0.00 4.73
2463 2550 2.324477 GCGACGGTACATGCATGC 59.676 61.111 26.53 11.82 0.00 4.06
2464 2551 3.014036 GGCGACGGTACATGCATG 58.986 61.111 25.09 25.09 0.00 4.06
2476 2563 3.736482 CTACGAGGCAGACGGCGAC 62.736 68.421 16.62 7.87 46.16 5.19
2477 2564 3.506096 CTACGAGGCAGACGGCGA 61.506 66.667 16.62 0.00 46.16 5.54
2479 2566 4.874977 GGCTACGAGGCAGACGGC 62.875 72.222 0.00 0.00 40.97 5.68
2480 2567 3.449227 TGGCTACGAGGCAGACGG 61.449 66.667 6.96 0.00 46.47 4.79
2505 2592 2.024414 ACAAACAGGGAGTCAAACTGC 58.976 47.619 8.19 0.00 35.67 4.40
2530 2617 8.825745 AGAAACATACTAGTACTTCTACTACGC 58.174 37.037 16.56 0.00 34.79 4.42
2539 2626 7.097834 GGAAGCACAGAAACATACTAGTACTT 58.902 38.462 4.31 0.00 0.00 2.24
2546 2633 5.171339 AGATGGAAGCACAGAAACATACT 57.829 39.130 0.00 0.00 0.00 2.12
2547 2634 5.886960 AAGATGGAAGCACAGAAACATAC 57.113 39.130 0.00 0.00 0.00 2.39
2566 2653 6.615316 TGGATTAGGTTGATCCATGACTAAGA 59.385 38.462 0.00 0.00 46.11 2.10
2596 2683 6.469410 TCACCCTCAACGACAAGTTAATTAT 58.531 36.000 0.00 0.00 42.02 1.28
2619 2707 0.623723 TGGAAAGTGGCCCCTACATC 59.376 55.000 0.00 0.00 0.00 3.06
2627 2715 3.763671 CACCTGTGGAAAGTGGCC 58.236 61.111 0.00 0.00 0.00 5.36
2657 2745 4.530875 CTTCATCTGAAAAGCCCCTACAT 58.469 43.478 0.00 0.00 33.07 2.29
2658 2746 3.873801 GCTTCATCTGAAAAGCCCCTACA 60.874 47.826 14.01 0.00 41.60 2.74
2659 2747 2.685388 GCTTCATCTGAAAAGCCCCTAC 59.315 50.000 14.01 0.00 41.60 3.18
2660 2748 3.004752 GCTTCATCTGAAAAGCCCCTA 57.995 47.619 14.01 0.00 41.60 3.53
2689 2813 2.938756 GCTACTTGCACTGAGAGCCAAT 60.939 50.000 0.00 0.00 42.31 3.16
2759 2883 5.106118 GGAAGAGGATTAACTGAACAAAGCC 60.106 44.000 0.00 0.00 0.00 4.35
2760 2884 5.106118 GGGAAGAGGATTAACTGAACAAAGC 60.106 44.000 0.00 0.00 0.00 3.51
2761 2885 6.003950 TGGGAAGAGGATTAACTGAACAAAG 58.996 40.000 0.00 0.00 0.00 2.77
2762 2886 5.947663 TGGGAAGAGGATTAACTGAACAAA 58.052 37.500 0.00 0.00 0.00 2.83
2763 2887 5.576563 TGGGAAGAGGATTAACTGAACAA 57.423 39.130 0.00 0.00 0.00 2.83
2764 2888 5.576563 TTGGGAAGAGGATTAACTGAACA 57.423 39.130 0.00 0.00 0.00 3.18
2765 2889 6.071896 CCTTTTGGGAAGAGGATTAACTGAAC 60.072 42.308 0.00 0.00 37.23 3.18
2766 2890 6.010219 CCTTTTGGGAAGAGGATTAACTGAA 58.990 40.000 0.00 0.00 37.23 3.02
2767 2891 5.312178 TCCTTTTGGGAAGAGGATTAACTGA 59.688 40.000 0.00 0.00 41.91 3.41
2768 2892 5.570320 TCCTTTTGGGAAGAGGATTAACTG 58.430 41.667 0.00 0.00 41.91 3.16
2769 2893 5.860648 TCCTTTTGGGAAGAGGATTAACT 57.139 39.130 0.00 0.00 41.91 2.24
2782 2906 0.709992 TCCCCTCCAATCCTTTTGGG 59.290 55.000 4.64 0.00 39.96 4.12
2783 2907 2.767960 CAATCCCCTCCAATCCTTTTGG 59.232 50.000 0.00 0.00 40.87 3.28
2784 2908 2.767960 CCAATCCCCTCCAATCCTTTTG 59.232 50.000 0.00 0.00 0.00 2.44
2785 2909 2.894007 GCCAATCCCCTCCAATCCTTTT 60.894 50.000 0.00 0.00 0.00 2.27
2786 2910 1.343377 GCCAATCCCCTCCAATCCTTT 60.343 52.381 0.00 0.00 0.00 3.11
2787 2911 0.262876 GCCAATCCCCTCCAATCCTT 59.737 55.000 0.00 0.00 0.00 3.36
2788 2912 0.925720 TGCCAATCCCCTCCAATCCT 60.926 55.000 0.00 0.00 0.00 3.24
2789 2913 0.032217 TTGCCAATCCCCTCCAATCC 60.032 55.000 0.00 0.00 0.00 3.01
2790 2914 1.406903 CTTGCCAATCCCCTCCAATC 58.593 55.000 0.00 0.00 0.00 2.67
2791 2915 0.031817 CCTTGCCAATCCCCTCCAAT 60.032 55.000 0.00 0.00 0.00 3.16
2792 2916 1.145900 TCCTTGCCAATCCCCTCCAA 61.146 55.000 0.00 0.00 0.00 3.53
2793 2917 0.925720 ATCCTTGCCAATCCCCTCCA 60.926 55.000 0.00 0.00 0.00 3.86
2794 2918 0.262876 AATCCTTGCCAATCCCCTCC 59.737 55.000 0.00 0.00 0.00 4.30
2795 2919 1.406903 CAATCCTTGCCAATCCCCTC 58.593 55.000 0.00 0.00 0.00 4.30
2796 2920 0.031817 CCAATCCTTGCCAATCCCCT 60.032 55.000 0.00 0.00 0.00 4.79
2797 2921 0.325577 ACCAATCCTTGCCAATCCCC 60.326 55.000 0.00 0.00 0.00 4.81
2798 2922 1.482182 GAACCAATCCTTGCCAATCCC 59.518 52.381 0.00 0.00 0.00 3.85
2799 2923 1.134946 CGAACCAATCCTTGCCAATCC 59.865 52.381 0.00 0.00 0.00 3.01
2800 2924 1.818674 ACGAACCAATCCTTGCCAATC 59.181 47.619 0.00 0.00 0.00 2.67
2801 2925 1.923356 ACGAACCAATCCTTGCCAAT 58.077 45.000 0.00 0.00 0.00 3.16
2802 2926 2.570415 TACGAACCAATCCTTGCCAA 57.430 45.000 0.00 0.00 0.00 4.52
2803 2927 2.799126 ATACGAACCAATCCTTGCCA 57.201 45.000 0.00 0.00 0.00 4.92
2804 2928 4.082463 TCAAAATACGAACCAATCCTTGCC 60.082 41.667 0.00 0.00 0.00 4.52
2805 2929 4.857037 GTCAAAATACGAACCAATCCTTGC 59.143 41.667 0.00 0.00 0.00 4.01
2806 2930 6.254281 AGTCAAAATACGAACCAATCCTTG 57.746 37.500 0.00 0.00 0.00 3.61
2807 2931 6.894339 AAGTCAAAATACGAACCAATCCTT 57.106 33.333 0.00 0.00 0.00 3.36
2808 2932 6.894339 AAAGTCAAAATACGAACCAATCCT 57.106 33.333 0.00 0.00 0.00 3.24
2809 2933 7.913821 GGATAAAGTCAAAATACGAACCAATCC 59.086 37.037 0.00 0.00 0.00 3.01
2810 2934 7.913821 GGGATAAAGTCAAAATACGAACCAATC 59.086 37.037 0.00 0.00 0.00 2.67
2811 2935 7.147966 GGGGATAAAGTCAAAATACGAACCAAT 60.148 37.037 0.00 0.00 0.00 3.16
2812 2936 6.151480 GGGGATAAAGTCAAAATACGAACCAA 59.849 38.462 0.00 0.00 0.00 3.67
2813 2937 5.648960 GGGGATAAAGTCAAAATACGAACCA 59.351 40.000 0.00 0.00 0.00 3.67
2814 2938 5.066893 GGGGGATAAAGTCAAAATACGAACC 59.933 44.000 0.00 0.00 0.00 3.62
2815 2939 5.884232 AGGGGGATAAAGTCAAAATACGAAC 59.116 40.000 0.00 0.00 0.00 3.95
2816 2940 6.069705 AGGGGGATAAAGTCAAAATACGAA 57.930 37.500 0.00 0.00 0.00 3.85
2817 2941 5.190132 TGAGGGGGATAAAGTCAAAATACGA 59.810 40.000 0.00 0.00 0.00 3.43
2818 2942 5.433526 TGAGGGGGATAAAGTCAAAATACG 58.566 41.667 0.00 0.00 0.00 3.06
2819 2943 7.363530 GGTTTGAGGGGGATAAAGTCAAAATAC 60.364 40.741 0.00 0.00 38.49 1.89
2820 2944 6.666113 GGTTTGAGGGGGATAAAGTCAAAATA 59.334 38.462 0.00 0.00 38.49 1.40
2821 2945 5.483937 GGTTTGAGGGGGATAAAGTCAAAAT 59.516 40.000 0.00 0.00 38.49 1.82
2822 2946 4.836175 GGTTTGAGGGGGATAAAGTCAAAA 59.164 41.667 0.00 0.00 38.49 2.44
2823 2947 4.412843 GGTTTGAGGGGGATAAAGTCAAA 58.587 43.478 0.00 0.00 35.34 2.69
2824 2948 3.245479 GGGTTTGAGGGGGATAAAGTCAA 60.245 47.826 0.00 0.00 0.00 3.18
2825 2949 2.310647 GGGTTTGAGGGGGATAAAGTCA 59.689 50.000 0.00 0.00 0.00 3.41
2826 2950 2.357881 GGGGTTTGAGGGGGATAAAGTC 60.358 54.545 0.00 0.00 0.00 3.01
2827 2951 1.644337 GGGGTTTGAGGGGGATAAAGT 59.356 52.381 0.00 0.00 0.00 2.66
2828 2952 1.930204 AGGGGTTTGAGGGGGATAAAG 59.070 52.381 0.00 0.00 0.00 1.85
2829 2953 2.084121 AGGGGTTTGAGGGGGATAAA 57.916 50.000 0.00 0.00 0.00 1.40
2830 2954 1.927371 GAAGGGGTTTGAGGGGGATAA 59.073 52.381 0.00 0.00 0.00 1.75
2831 2955 1.203635 TGAAGGGGTTTGAGGGGGATA 60.204 52.381 0.00 0.00 0.00 2.59
2832 2956 0.479589 TGAAGGGGTTTGAGGGGGAT 60.480 55.000 0.00 0.00 0.00 3.85
2833 2957 0.703056 TTGAAGGGGTTTGAGGGGGA 60.703 55.000 0.00 0.00 0.00 4.81
2834 2958 0.413434 ATTGAAGGGGTTTGAGGGGG 59.587 55.000 0.00 0.00 0.00 5.40
2835 2959 1.619704 GGATTGAAGGGGTTTGAGGGG 60.620 57.143 0.00 0.00 0.00 4.79
2836 2960 1.077005 TGGATTGAAGGGGTTTGAGGG 59.923 52.381 0.00 0.00 0.00 4.30
2837 2961 2.171003 GTGGATTGAAGGGGTTTGAGG 58.829 52.381 0.00 0.00 0.00 3.86
2838 2962 3.160679 AGTGGATTGAAGGGGTTTGAG 57.839 47.619 0.00 0.00 0.00 3.02
2839 2963 3.010138 CCTAGTGGATTGAAGGGGTTTGA 59.990 47.826 0.00 0.00 34.57 2.69
2840 2964 3.010138 TCCTAGTGGATTGAAGGGGTTTG 59.990 47.826 0.00 0.00 37.46 2.93
2841 2965 3.265489 TCCTAGTGGATTGAAGGGGTTT 58.735 45.455 0.00 0.00 37.46 3.27
2842 2966 2.929301 TCCTAGTGGATTGAAGGGGTT 58.071 47.619 0.00 0.00 37.46 4.11
2843 2967 2.661176 TCCTAGTGGATTGAAGGGGT 57.339 50.000 0.00 0.00 37.46 4.95
2854 2978 3.131396 GGTTGCGTATGAATCCTAGTGG 58.869 50.000 0.00 0.00 0.00 4.00
2855 2979 2.794910 CGGTTGCGTATGAATCCTAGTG 59.205 50.000 0.00 0.00 0.00 2.74
2856 2980 2.429610 ACGGTTGCGTATGAATCCTAGT 59.570 45.455 0.00 0.00 0.00 2.57
2857 2981 3.093717 ACGGTTGCGTATGAATCCTAG 57.906 47.619 0.00 0.00 0.00 3.02
2858 2982 3.380954 TGTACGGTTGCGTATGAATCCTA 59.619 43.478 0.00 0.00 0.00 2.94
2859 2983 2.166870 TGTACGGTTGCGTATGAATCCT 59.833 45.455 0.00 0.00 0.00 3.24
2860 2984 2.542597 TGTACGGTTGCGTATGAATCC 58.457 47.619 0.00 0.00 0.00 3.01
2861 2985 3.000925 CCTTGTACGGTTGCGTATGAATC 59.999 47.826 0.00 0.00 0.00 2.52
2862 2986 2.933906 CCTTGTACGGTTGCGTATGAAT 59.066 45.455 0.00 0.00 0.00 2.57
2863 2987 2.339418 CCTTGTACGGTTGCGTATGAA 58.661 47.619 0.00 0.00 0.00 2.57
2864 2988 1.999048 CCTTGTACGGTTGCGTATGA 58.001 50.000 0.00 0.00 0.00 2.15
2865 2989 0.372334 GCCTTGTACGGTTGCGTATG 59.628 55.000 0.00 0.00 0.00 2.39
2866 2990 0.741927 GGCCTTGTACGGTTGCGTAT 60.742 55.000 0.00 0.00 0.00 3.06
2867 2991 1.374505 GGCCTTGTACGGTTGCGTA 60.375 57.895 0.00 0.00 0.00 4.42
2868 2992 2.667199 GGCCTTGTACGGTTGCGT 60.667 61.111 0.00 0.00 0.00 5.24
2869 2993 0.671163 TAAGGCCTTGTACGGTTGCG 60.671 55.000 28.77 0.00 0.00 4.85
2870 2994 1.467342 CTTAAGGCCTTGTACGGTTGC 59.533 52.381 28.77 0.00 0.00 4.17
2871 2995 2.081462 CCTTAAGGCCTTGTACGGTTG 58.919 52.381 28.77 8.29 0.00 3.77
2872 2996 1.003928 CCCTTAAGGCCTTGTACGGTT 59.996 52.381 28.77 0.57 0.00 4.44
2873 2997 0.616891 CCCTTAAGGCCTTGTACGGT 59.383 55.000 28.77 1.45 0.00 4.83
2874 2998 0.107361 CCCCTTAAGGCCTTGTACGG 60.107 60.000 28.77 19.63 0.00 4.02
2875 2999 3.471354 CCCCTTAAGGCCTTGTACG 57.529 57.895 28.77 12.33 0.00 3.67
2884 3008 1.679032 CCGAAAGACTGCCCCTTAAGG 60.679 57.143 15.14 15.14 0.00 2.69
2885 3009 1.003233 ACCGAAAGACTGCCCCTTAAG 59.997 52.381 0.00 0.00 0.00 1.85
2886 3010 1.061546 ACCGAAAGACTGCCCCTTAA 58.938 50.000 0.00 0.00 0.00 1.85
2887 3011 1.941377 TACCGAAAGACTGCCCCTTA 58.059 50.000 0.00 0.00 0.00 2.69
2888 3012 1.065418 CATACCGAAAGACTGCCCCTT 60.065 52.381 0.00 0.00 0.00 3.95
2914 3038 9.956720 AATTCTGTTCTTAGTTCTTGTGAATTG 57.043 29.630 0.00 0.00 34.40 2.32
2944 3068 3.209410 AGCCACAAATCCTCATTCGATC 58.791 45.455 0.00 0.00 0.00 3.69
3044 3169 9.683870 AGGTATATAATGAAACCCACGTTTAAA 57.316 29.630 0.00 0.00 42.34 1.52
3046 3171 8.266473 ACAGGTATATAATGAAACCCACGTTTA 58.734 33.333 3.78 0.00 42.34 2.01
3066 3191 1.270094 CCACGAAACTGAGCACAGGTA 60.270 52.381 15.83 0.00 43.96 3.08
3074 3199 2.778299 TCCATTTCCCACGAAACTGAG 58.222 47.619 0.00 0.00 40.74 3.35
3087 3212 4.210331 AGATTACCACAGGCATCCATTTC 58.790 43.478 0.00 0.00 0.00 2.17
3155 3281 2.136196 TTTTGTCGCGAATGGGTGGC 62.136 55.000 12.06 0.00 0.00 5.01
3188 3316 6.535161 AATTCTGGGATATCAAATCTGGGA 57.465 37.500 4.83 0.00 0.00 4.37
3267 3409 0.754217 AATGCATTGGAGCTCCGCAT 60.754 50.000 30.09 30.09 40.64 4.73
3310 3455 9.582431 TGTAGTCTTAAGTTCAGATATTTTCCG 57.418 33.333 1.63 0.00 0.00 4.30
3314 3459 7.707035 CCGCTGTAGTCTTAAGTTCAGATATTT 59.293 37.037 16.44 0.00 0.00 1.40
3398 3543 2.395619 CTTAGGTGATAACGGACCCCT 58.604 52.381 0.00 0.00 32.03 4.79
3407 3552 6.001460 CACAAAAGTGTCCCTTAGGTGATAA 58.999 40.000 0.00 0.00 38.58 1.75
3456 3601 3.406361 CACGTGACAGCGGCAGAC 61.406 66.667 10.90 0.00 35.98 3.51
3457 3602 3.911698 ACACGTGACAGCGGCAGA 61.912 61.111 25.01 0.00 35.98 4.26
3465 3610 1.813337 CAGCACACCACACGTGACA 60.813 57.895 25.01 0.00 46.20 3.58
3470 3615 2.896801 GAAGCCAGCACACCACACG 61.897 63.158 0.00 0.00 0.00 4.49
3475 3620 0.390998 GAGAGAGAAGCCAGCACACC 60.391 60.000 0.00 0.00 0.00 4.16
3477 3622 0.607112 CAGAGAGAGAAGCCAGCACA 59.393 55.000 0.00 0.00 0.00 4.57
3483 3628 9.471084 GTAAACTATAATTCAGAGAGAGAAGCC 57.529 37.037 0.00 0.00 0.00 4.35
3513 3658 6.949578 ATCCTGAAAATGCGTACAAAAATG 57.050 33.333 0.00 0.00 0.00 2.32
3561 3706 6.878923 AGCCTAAGAAAAACAAAGCAAAAACT 59.121 30.769 0.00 0.00 0.00 2.66
3570 3715 5.197451 TCTCCACAGCCTAAGAAAAACAAA 58.803 37.500 0.00 0.00 0.00 2.83
3711 3858 2.672478 CGAGAACGACTCTTGGAAGCAT 60.672 50.000 11.10 0.00 42.92 3.79
3738 3885 4.858850 ACCATATGGAAGCAAATCTGTGA 58.141 39.130 28.77 0.00 38.94 3.58
3741 3888 5.589855 TGTGTACCATATGGAAGCAAATCTG 59.410 40.000 28.77 0.00 38.94 2.90
3764 3911 2.748461 TTTTTCGAGAAGCACGGTTG 57.252 45.000 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.