Multiple sequence alignment - TraesCS5A01G399500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G399500 chr5A 100.000 3165 0 0 1 3165 593056861 593053697 0.000000e+00 5845.0
1 TraesCS5A01G399500 chr5A 88.446 1004 105 6 1360 2354 592832878 592833879 0.000000e+00 1201.0
2 TraesCS5A01G399500 chr5A 88.511 1001 104 6 1363 2354 593036659 593035661 0.000000e+00 1201.0
3 TraesCS5A01G399500 chr5A 92.920 565 40 0 2427 2991 592837685 592838249 0.000000e+00 822.0
4 TraesCS5A01G399500 chr5A 87.542 602 59 9 2427 3022 593034459 593033868 0.000000e+00 682.0
5 TraesCS5A01G399500 chr5A 87.375 602 60 8 2427 3022 592835043 592835634 0.000000e+00 676.0
6 TraesCS5A01G399500 chr5A 82.374 556 53 23 749 1299 592832191 592832706 2.900000e-120 442.0
7 TraesCS5A01G399500 chr5A 86.173 405 54 1 1731 2135 592691273 592690871 1.350000e-118 436.0
8 TraesCS5A01G399500 chr5A 83.721 473 39 19 831 1299 593037272 593036834 2.270000e-111 412.0
9 TraesCS5A01G399500 chr5A 81.481 432 51 18 876 1301 592827287 592826879 8.460000e-86 327.0
10 TraesCS5A01G399500 chr5A 97.701 174 3 1 2993 3165 592859788 592859961 6.640000e-77 298.0
11 TraesCS5A01G399500 chr5A 87.243 243 31 0 2427 2669 592837198 592837440 8.650000e-71 278.0
12 TraesCS5A01G399500 chr5B 91.233 1768 113 23 622 2354 580432211 580430451 0.000000e+00 2368.0
13 TraesCS5A01G399500 chr5B 84.904 987 114 19 1354 2309 580426998 580426016 0.000000e+00 965.0
14 TraesCS5A01G399500 chr5B 88.732 426 41 3 2603 3023 580429726 580429303 6.050000e-142 514.0
15 TraesCS5A01G399500 chr5B 81.508 557 58 25 749 1300 580427680 580427164 1.760000e-112 416.0
16 TraesCS5A01G399500 chr5B 92.903 155 11 0 2427 2581 580429932 580429778 3.180000e-55 226.0
17 TraesCS5A01G399500 chr5B 79.885 174 28 6 222 393 228769083 228769251 1.540000e-23 121.0
18 TraesCS5A01G399500 chr5B 78.000 200 24 13 372 571 580443282 580443103 1.200000e-19 108.0
19 TraesCS5A01G399500 chr5B 86.765 68 8 1 167 234 476925109 476925043 1.220000e-09 75.0
20 TraesCS5A01G399500 chr5D 92.443 1138 57 11 1300 2414 473064442 473063311 0.000000e+00 1598.0
21 TraesCS5A01G399500 chr5D 88.312 1001 106 6 1363 2354 473052779 473051781 0.000000e+00 1190.0
22 TraesCS5A01G399500 chr5D 87.128 940 71 27 368 1301 473065363 473064468 0.000000e+00 1020.0
23 TraesCS5A01G399500 chr5D 85.363 977 107 21 1363 2309 473041432 473040462 0.000000e+00 979.0
24 TraesCS5A01G399500 chr5D 88.538 602 53 8 2427 3022 473050785 473050194 0.000000e+00 715.0
25 TraesCS5A01G399500 chr5D 88.519 601 44 7 2427 3023 473063326 473062747 0.000000e+00 704.0
26 TraesCS5A01G399500 chr5D 82.292 576 61 23 737 1301 473053462 473052917 8.000000e-126 460.0
27 TraesCS5A01G399500 chr5D 84.355 473 45 16 836 1301 473042556 473042106 1.350000e-118 436.0
28 TraesCS5A01G399500 chr5D 94.375 160 6 3 3009 3165 308381166 308381325 3.150000e-60 243.0
29 TraesCS5A01G399500 chr5D 93.939 99 6 0 50 148 473065463 473065365 1.970000e-32 150.0
30 TraesCS5A01G399500 chr5D 84.247 146 18 5 222 364 502885764 502885621 1.530000e-28 137.0
31 TraesCS5A01G399500 chr3A 97.297 148 3 1 3019 3165 520971383 520971530 1.880000e-62 250.0
32 TraesCS5A01G399500 chr3A 90.164 61 6 0 165 225 636691352 636691412 2.620000e-11 80.5
33 TraesCS5A01G399500 chr7A 96.667 150 4 1 3017 3165 186279900 186279751 6.780000e-62 248.0
34 TraesCS5A01G399500 chr7A 79.710 207 29 8 165 370 188660118 188660312 1.530000e-28 137.0
35 TraesCS5A01G399500 chr7A 100.000 47 0 0 3 49 26164630 26164676 1.560000e-13 87.9
36 TraesCS5A01G399500 chr7A 100.000 47 0 0 3 49 591161948 591161902 1.560000e-13 87.9
37 TraesCS5A01G399500 chr4D 95.513 156 6 1 3011 3165 74595395 74595240 6.780000e-62 248.0
38 TraesCS5A01G399500 chr4D 100.000 47 0 0 3 49 81216028 81215982 1.560000e-13 87.9
39 TraesCS5A01G399500 chr4D 100.000 47 0 0 3 49 384483113 384483159 1.560000e-13 87.9
40 TraesCS5A01G399500 chr4D 86.301 73 8 2 154 225 319269596 319269667 9.410000e-11 78.7
41 TraesCS5A01G399500 chr2A 95.513 156 4 3 3013 3165 129086634 129086789 2.440000e-61 246.0
42 TraesCS5A01G399500 chr2A 85.915 71 8 2 156 225 183332930 183332999 1.220000e-09 75.0
43 TraesCS5A01G399500 chr2D 94.937 158 5 3 3010 3165 543012445 543012601 8.770000e-61 244.0
44 TraesCS5A01G399500 chr6D 91.379 174 9 5 2993 3165 429363547 429363379 1.900000e-57 233.0
45 TraesCS5A01G399500 chr6D 86.667 150 17 3 216 365 434464367 434464513 2.530000e-36 163.0
46 TraesCS5A01G399500 chr6D 80.769 156 24 6 222 371 69087077 69086922 1.990000e-22 117.0
47 TraesCS5A01G399500 chr6A 90.503 179 12 5 2990 3165 505070902 505070726 6.830000e-57 231.0
48 TraesCS5A01G399500 chr6A 82.432 148 21 5 222 364 87253095 87252948 1.190000e-24 124.0
49 TraesCS5A01G399500 chr1A 84.354 147 18 5 222 365 21715909 21716053 4.260000e-29 139.0
50 TraesCS5A01G399500 chr3B 82.734 139 21 3 228 365 739888732 739888596 1.540000e-23 121.0
51 TraesCS5A01G399500 chr7B 81.507 146 23 4 222 365 128772251 128772108 1.990000e-22 117.0
52 TraesCS5A01G399500 chr3D 89.744 78 2 4 235 307 585995956 585996032 9.350000e-16 95.3
53 TraesCS5A01G399500 chr3D 100.000 47 0 0 3 49 112101616 112101570 1.560000e-13 87.9
54 TraesCS5A01G399500 chr3D 100.000 47 0 0 3 49 476564422 476564468 1.560000e-13 87.9
55 TraesCS5A01G399500 chr4A 100.000 47 0 0 3 49 153665531 153665577 1.560000e-13 87.9
56 TraesCS5A01G399500 chr4A 100.000 47 0 0 3 49 611690607 611690561 1.560000e-13 87.9
57 TraesCS5A01G399500 chr4A 86.301 73 8 2 154 225 154501911 154501840 9.410000e-11 78.7
58 TraesCS5A01G399500 chr1D 100.000 47 0 0 3 49 52692351 52692397 1.560000e-13 87.9
59 TraesCS5A01G399500 chr6B 90.164 61 6 0 165 225 658243064 658243004 2.620000e-11 80.5
60 TraesCS5A01G399500 chr7D 86.957 69 8 1 158 225 633525217 633525149 3.390000e-10 76.8
61 TraesCS5A01G399500 chr4B 86.111 72 9 1 154 225 396716016 396716086 3.390000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G399500 chr5A 593053697 593056861 3164 True 5845.000000 5845 100.000000 1 3165 1 chr5A.!!$R3 3164
1 TraesCS5A01G399500 chr5A 593033868 593037272 3404 True 765.000000 1201 86.591333 831 3022 3 chr5A.!!$R4 2191
2 TraesCS5A01G399500 chr5A 592832191 592838249 6058 False 683.800000 1201 87.671600 749 3022 5 chr5A.!!$F2 2273
3 TraesCS5A01G399500 chr5B 580426016 580432211 6195 True 897.800000 2368 87.856000 622 3023 5 chr5B.!!$R3 2401
4 TraesCS5A01G399500 chr5D 473062747 473065463 2716 True 868.000000 1598 90.507250 50 3023 4 chr5D.!!$R4 2973
5 TraesCS5A01G399500 chr5D 473050194 473053462 3268 True 788.333333 1190 86.380667 737 3022 3 chr5D.!!$R3 2285
6 TraesCS5A01G399500 chr5D 473040462 473042556 2094 True 707.500000 979 84.859000 836 2309 2 chr5D.!!$R2 1473

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.036388 ACCCTGATAAGTGCCACACG 60.036 55.0 0.00 0.0 39.64 4.49 F
336 337 0.037232 AGTGAAGGCCGTAGTGCTTC 60.037 55.0 0.00 0.0 0.00 3.86 F
591 597 0.242555 TCGTGCATCGTAACAGCTCA 59.757 50.0 8.22 0.0 40.80 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1402 2093 0.106708 TTTGCCGTCTTCTCTGTGCT 59.893 50.0 0.00 0.0 0.00 4.40 R
1461 2152 1.018148 TCTCGAGCTCCGTCTTGATC 58.982 55.0 7.81 0.0 39.75 2.92 R
2438 4453 0.037326 GAGTGATGTCGGAAGCACCA 60.037 55.0 3.52 0.0 38.90 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 4.946160 AGGATTCCATTCCTACAAACCA 57.054 40.909 5.29 0.00 44.50 3.67
45 46 5.269554 AGGATTCCATTCCTACAAACCAA 57.730 39.130 5.29 0.00 44.50 3.67
46 47 5.650283 AGGATTCCATTCCTACAAACCAAA 58.350 37.500 5.29 0.00 44.50 3.28
47 48 5.716703 AGGATTCCATTCCTACAAACCAAAG 59.283 40.000 5.29 0.00 44.50 2.77
48 49 5.714806 GGATTCCATTCCTACAAACCAAAGA 59.285 40.000 0.00 0.00 32.68 2.52
77 78 2.747686 GTGGAGGACTTTGCCGGA 59.252 61.111 5.05 0.00 0.00 5.14
97 98 2.367512 GGAGGGTGGGCCAGATCT 60.368 66.667 6.40 4.41 36.17 2.75
101 102 2.679716 GGTGGGCCAGATCTGCTT 59.320 61.111 17.76 0.00 34.09 3.91
111 112 2.159071 CCAGATCTGCTTGAGGTGAGAG 60.159 54.545 17.76 0.00 0.00 3.20
113 114 2.760092 AGATCTGCTTGAGGTGAGAGAC 59.240 50.000 0.00 0.00 0.00 3.36
148 149 2.156891 TCGCAGCACAAAACGAAGATAC 59.843 45.455 0.00 0.00 0.00 2.24
149 150 2.157668 CGCAGCACAAAACGAAGATACT 59.842 45.455 0.00 0.00 0.00 2.12
150 151 3.722082 CGCAGCACAAAACGAAGATACTC 60.722 47.826 0.00 0.00 0.00 2.59
151 152 3.424962 GCAGCACAAAACGAAGATACTCC 60.425 47.826 0.00 0.00 0.00 3.85
152 153 3.997021 CAGCACAAAACGAAGATACTCCT 59.003 43.478 0.00 0.00 0.00 3.69
153 154 3.997021 AGCACAAAACGAAGATACTCCTG 59.003 43.478 0.00 0.00 0.00 3.86
154 155 3.125316 GCACAAAACGAAGATACTCCTGG 59.875 47.826 0.00 0.00 0.00 4.45
155 156 4.315803 CACAAAACGAAGATACTCCTGGT 58.684 43.478 0.00 0.00 0.00 4.00
156 157 5.475719 CACAAAACGAAGATACTCCTGGTA 58.524 41.667 0.00 0.00 34.62 3.25
157 158 5.929992 CACAAAACGAAGATACTCCTGGTAA 59.070 40.000 0.00 0.00 33.74 2.85
158 159 6.425721 CACAAAACGAAGATACTCCTGGTAAA 59.574 38.462 0.00 0.00 33.74 2.01
159 160 7.119262 CACAAAACGAAGATACTCCTGGTAAAT 59.881 37.037 0.00 0.00 33.74 1.40
160 161 8.316214 ACAAAACGAAGATACTCCTGGTAAATA 58.684 33.333 0.00 0.00 33.74 1.40
161 162 9.326413 CAAAACGAAGATACTCCTGGTAAATAT 57.674 33.333 0.00 0.00 33.74 1.28
162 163 9.901172 AAAACGAAGATACTCCTGGTAAATATT 57.099 29.630 0.00 0.00 33.74 1.28
171 172 7.809880 ACTCCTGGTAAATATTATAGGACCC 57.190 40.000 0.00 0.00 31.50 4.46
172 173 7.554560 ACTCCTGGTAAATATTATAGGACCCT 58.445 38.462 0.00 0.00 31.50 4.34
173 174 7.458170 ACTCCTGGTAAATATTATAGGACCCTG 59.542 40.741 0.00 0.00 31.50 4.45
174 175 7.550042 TCCTGGTAAATATTATAGGACCCTGA 58.450 38.462 0.00 0.00 29.86 3.86
175 176 8.191110 TCCTGGTAAATATTATAGGACCCTGAT 58.809 37.037 0.00 0.00 29.86 2.90
176 177 9.502035 CCTGGTAAATATTATAGGACCCTGATA 57.498 37.037 0.00 0.00 0.00 2.15
182 183 5.763876 ATTATAGGACCCTGATAAGTGCC 57.236 43.478 0.00 0.00 0.00 5.01
183 184 2.561209 TAGGACCCTGATAAGTGCCA 57.439 50.000 0.00 0.00 0.00 4.92
184 185 0.912486 AGGACCCTGATAAGTGCCAC 59.088 55.000 0.00 0.00 0.00 5.01
185 186 0.618458 GGACCCTGATAAGTGCCACA 59.382 55.000 0.00 0.00 0.00 4.17
186 187 1.679032 GGACCCTGATAAGTGCCACAC 60.679 57.143 0.00 0.00 34.10 3.82
187 188 0.036388 ACCCTGATAAGTGCCACACG 60.036 55.000 0.00 0.00 39.64 4.49
188 189 0.036388 CCCTGATAAGTGCCACACGT 60.036 55.000 0.00 0.00 39.64 4.49
189 190 1.078709 CCTGATAAGTGCCACACGTG 58.921 55.000 15.48 15.48 39.64 4.49
190 191 1.608025 CCTGATAAGTGCCACACGTGT 60.608 52.381 17.22 17.22 39.64 4.49
191 192 1.460743 CTGATAAGTGCCACACGTGTG 59.539 52.381 36.13 36.13 45.23 3.82
205 206 4.557554 TGTGGCACAGACACTTGG 57.442 55.556 17.96 0.00 42.96 3.61
206 207 1.607071 TGTGGCACAGACACTTGGT 59.393 52.632 17.96 0.00 42.96 3.67
207 208 0.833949 TGTGGCACAGACACTTGGTA 59.166 50.000 17.96 0.00 42.96 3.25
208 209 1.210722 TGTGGCACAGACACTTGGTAA 59.789 47.619 17.96 0.00 42.96 2.85
209 210 1.602377 GTGGCACAGACACTTGGTAAC 59.398 52.381 13.86 0.00 41.80 2.50
210 211 1.488812 TGGCACAGACACTTGGTAACT 59.511 47.619 0.00 0.00 37.61 2.24
211 212 2.143925 GGCACAGACACTTGGTAACTC 58.856 52.381 0.00 0.00 37.61 3.01
212 213 2.143925 GCACAGACACTTGGTAACTCC 58.856 52.381 0.00 0.00 37.61 3.85
213 214 2.484770 GCACAGACACTTGGTAACTCCA 60.485 50.000 0.00 0.00 45.60 3.86
234 235 9.423061 ACTCCAAACATATTTTAATTGTCAAGC 57.577 29.630 0.00 0.00 0.00 4.01
235 236 9.421806 CTCCAAACATATTTTAATTGTCAAGCA 57.578 29.630 0.00 0.00 0.00 3.91
236 237 9.941325 TCCAAACATATTTTAATTGTCAAGCAT 57.059 25.926 0.00 0.00 0.00 3.79
237 238 9.976255 CCAAACATATTTTAATTGTCAAGCATG 57.024 29.630 0.00 0.00 0.00 4.06
251 252 4.847633 TCAAGCATGACAACTTCTTTTCG 58.152 39.130 0.00 0.00 0.00 3.46
252 253 3.904136 AGCATGACAACTTCTTTTCGG 57.096 42.857 0.00 0.00 0.00 4.30
253 254 3.476552 AGCATGACAACTTCTTTTCGGA 58.523 40.909 0.00 0.00 0.00 4.55
254 255 4.074970 AGCATGACAACTTCTTTTCGGAT 58.925 39.130 0.00 0.00 0.00 4.18
255 256 4.083110 AGCATGACAACTTCTTTTCGGATG 60.083 41.667 0.00 0.00 0.00 3.51
256 257 4.083324 GCATGACAACTTCTTTTCGGATGA 60.083 41.667 0.00 0.00 0.00 2.92
257 258 5.385617 CATGACAACTTCTTTTCGGATGAC 58.614 41.667 0.00 0.00 0.00 3.06
258 259 4.447290 TGACAACTTCTTTTCGGATGACA 58.553 39.130 0.00 0.00 0.00 3.58
259 260 4.878971 TGACAACTTCTTTTCGGATGACAA 59.121 37.500 0.00 0.00 0.00 3.18
260 261 5.007626 TGACAACTTCTTTTCGGATGACAAG 59.992 40.000 0.00 0.00 33.98 3.16
261 262 4.881850 ACAACTTCTTTTCGGATGACAAGT 59.118 37.500 0.00 0.00 34.28 3.16
262 263 5.357032 ACAACTTCTTTTCGGATGACAAGTT 59.643 36.000 0.00 0.00 34.28 2.66
263 264 6.127730 ACAACTTCTTTTCGGATGACAAGTTT 60.128 34.615 0.00 0.00 34.28 2.66
264 265 6.061231 ACTTCTTTTCGGATGACAAGTTTC 57.939 37.500 0.00 0.00 34.28 2.78
265 266 5.588648 ACTTCTTTTCGGATGACAAGTTTCA 59.411 36.000 0.00 0.00 34.28 2.69
266 267 5.673337 TCTTTTCGGATGACAAGTTTCAG 57.327 39.130 0.00 0.00 34.28 3.02
267 268 5.123227 TCTTTTCGGATGACAAGTTTCAGT 58.877 37.500 0.00 0.00 34.28 3.41
268 269 5.588648 TCTTTTCGGATGACAAGTTTCAGTT 59.411 36.000 0.00 0.00 34.28 3.16
269 270 5.828299 TTTCGGATGACAAGTTTCAGTTT 57.172 34.783 0.00 0.00 0.00 2.66
270 271 5.828299 TTCGGATGACAAGTTTCAGTTTT 57.172 34.783 0.00 0.00 0.00 2.43
271 272 5.168526 TCGGATGACAAGTTTCAGTTTTG 57.831 39.130 0.00 0.00 0.00 2.44
272 273 4.638421 TCGGATGACAAGTTTCAGTTTTGT 59.362 37.500 0.00 0.00 37.72 2.83
273 274 5.124776 TCGGATGACAAGTTTCAGTTTTGTT 59.875 36.000 0.00 0.00 35.35 2.83
274 275 5.804979 CGGATGACAAGTTTCAGTTTTGTTT 59.195 36.000 0.00 0.00 35.35 2.83
275 276 6.237542 CGGATGACAAGTTTCAGTTTTGTTTG 60.238 38.462 0.00 0.00 35.35 2.93
276 277 6.589907 GGATGACAAGTTTCAGTTTTGTTTGT 59.410 34.615 0.00 0.00 35.35 2.83
277 278 7.117667 GGATGACAAGTTTCAGTTTTGTTTGTT 59.882 33.333 0.00 0.00 35.35 2.83
278 279 7.778470 TGACAAGTTTCAGTTTTGTTTGTTT 57.222 28.000 0.00 0.00 35.35 2.83
279 280 7.625553 TGACAAGTTTCAGTTTTGTTTGTTTG 58.374 30.769 0.00 0.00 35.35 2.93
280 281 7.278868 TGACAAGTTTCAGTTTTGTTTGTTTGT 59.721 29.630 0.00 0.00 35.35 2.83
281 282 7.980062 ACAAGTTTCAGTTTTGTTTGTTTGTT 58.020 26.923 0.00 0.00 31.38 2.83
282 283 8.454894 ACAAGTTTCAGTTTTGTTTGTTTGTTT 58.545 25.926 0.00 0.00 31.38 2.83
283 284 9.283420 CAAGTTTCAGTTTTGTTTGTTTGTTTT 57.717 25.926 0.00 0.00 0.00 2.43
284 285 9.847706 AAGTTTCAGTTTTGTTTGTTTGTTTTT 57.152 22.222 0.00 0.00 0.00 1.94
308 309 9.442047 TTTTTCTTTTTGAATGGCAACTTTAGA 57.558 25.926 0.00 0.00 35.91 2.10
309 310 9.442047 TTTTCTTTTTGAATGGCAACTTTAGAA 57.558 25.926 0.00 0.00 35.91 2.10
310 311 8.647143 TTCTTTTTGAATGGCAACTTTAGAAG 57.353 30.769 0.00 0.00 35.91 2.85
311 312 7.781056 TCTTTTTGAATGGCAACTTTAGAAGT 58.219 30.769 0.00 0.00 45.46 3.01
312 313 8.908903 TCTTTTTGAATGGCAACTTTAGAAGTA 58.091 29.630 0.00 0.00 41.91 2.24
313 314 9.528018 CTTTTTGAATGGCAACTTTAGAAGTAA 57.472 29.630 0.00 0.00 41.91 2.24
314 315 9.877178 TTTTTGAATGGCAACTTTAGAAGTAAA 57.123 25.926 0.00 0.00 41.91 2.01
315 316 9.877178 TTTTGAATGGCAACTTTAGAAGTAAAA 57.123 25.926 0.00 0.00 41.91 1.52
316 317 9.877178 TTTGAATGGCAACTTTAGAAGTAAAAA 57.123 25.926 0.00 0.00 41.91 1.94
333 334 1.235724 AAAAGTGAAGGCCGTAGTGC 58.764 50.000 0.00 0.00 0.00 4.40
334 335 0.396811 AAAGTGAAGGCCGTAGTGCT 59.603 50.000 0.00 0.00 0.00 4.40
335 336 0.396811 AAGTGAAGGCCGTAGTGCTT 59.603 50.000 0.00 0.00 0.00 3.91
336 337 0.037232 AGTGAAGGCCGTAGTGCTTC 60.037 55.000 0.00 0.00 0.00 3.86
337 338 0.320421 GTGAAGGCCGTAGTGCTTCA 60.320 55.000 0.00 0.00 0.00 3.02
338 339 0.613260 TGAAGGCCGTAGTGCTTCAT 59.387 50.000 0.00 0.00 0.00 2.57
339 340 1.009829 GAAGGCCGTAGTGCTTCATG 58.990 55.000 0.00 0.00 0.00 3.07
340 341 1.026718 AAGGCCGTAGTGCTTCATGC 61.027 55.000 0.00 0.00 43.25 4.06
341 342 2.472909 GGCCGTAGTGCTTCATGCC 61.473 63.158 0.00 0.00 42.00 4.40
342 343 1.745115 GCCGTAGTGCTTCATGCCA 60.745 57.895 0.00 0.00 42.00 4.92
343 344 1.982073 GCCGTAGTGCTTCATGCCAC 61.982 60.000 0.00 0.00 42.00 5.01
344 345 0.673333 CCGTAGTGCTTCATGCCACA 60.673 55.000 11.68 0.00 42.00 4.17
345 346 0.443869 CGTAGTGCTTCATGCCACAC 59.556 55.000 11.68 8.21 42.00 3.82
346 347 1.522668 GTAGTGCTTCATGCCACACA 58.477 50.000 12.38 0.27 42.00 3.72
347 348 2.086869 GTAGTGCTTCATGCCACACAT 58.913 47.619 12.38 3.34 42.00 3.21
415 416 2.932614 CCACACGTGGCAAAATTTGAAA 59.067 40.909 21.57 0.00 44.73 2.69
419 420 5.289675 CACACGTGGCAAAATTTGAAAGTTA 59.710 36.000 21.57 0.00 0.00 2.24
422 423 6.420604 CACGTGGCAAAATTTGAAAGTTATCT 59.579 34.615 10.26 0.00 0.00 1.98
442 443 2.922740 TTTTTAGTGGCTCCGAGTGT 57.077 45.000 0.00 0.00 0.00 3.55
444 445 4.339872 TTTTTAGTGGCTCCGAGTGTAA 57.660 40.909 0.00 0.00 0.00 2.41
445 446 4.339872 TTTTAGTGGCTCCGAGTGTAAA 57.660 40.909 0.00 0.00 0.00 2.01
446 447 4.339872 TTTAGTGGCTCCGAGTGTAAAA 57.660 40.909 0.00 0.00 0.00 1.52
447 448 2.457366 AGTGGCTCCGAGTGTAAAAG 57.543 50.000 0.00 0.00 0.00 2.27
448 449 1.692519 AGTGGCTCCGAGTGTAAAAGT 59.307 47.619 0.00 0.00 0.00 2.66
449 450 2.104281 AGTGGCTCCGAGTGTAAAAGTT 59.896 45.455 0.00 0.00 0.00 2.66
479 480 9.953565 ACATAGAGTGTGTAGCCTAAAATAAAA 57.046 29.630 0.00 0.00 40.28 1.52
493 494 9.914923 GCCTAAAATAAAAATAAAAATGGAGCG 57.085 29.630 0.00 0.00 0.00 5.03
498 499 4.551702 AAAATAAAAATGGAGCGGCCTT 57.448 36.364 0.00 0.00 37.63 4.35
528 529 5.463061 CGATTTGAAGGCAACAATTTTGACT 59.537 36.000 3.68 3.68 40.01 3.41
535 536 5.376625 AGGCAACAATTTTGACTGACTCTA 58.623 37.500 7.62 0.00 36.20 2.43
538 539 6.426937 GGCAACAATTTTGACTGACTCTACTA 59.573 38.462 0.00 0.00 0.00 1.82
556 557 8.391075 CTCTACTAGAGTTGCTCTATTAGCTT 57.609 38.462 18.07 0.00 43.38 3.74
557 558 8.289618 CTCTACTAGAGTTGCTCTATTAGCTTG 58.710 40.741 18.07 11.10 43.38 4.01
591 597 0.242555 TCGTGCATCGTAACAGCTCA 59.757 50.000 8.22 0.00 40.80 4.26
592 598 0.366871 CGTGCATCGTAACAGCTCAC 59.633 55.000 0.00 0.00 34.52 3.51
593 599 1.428448 GTGCATCGTAACAGCTCACA 58.572 50.000 0.00 0.00 0.00 3.58
594 600 2.002586 GTGCATCGTAACAGCTCACAT 58.997 47.619 0.00 0.00 0.00 3.21
595 601 3.186909 GTGCATCGTAACAGCTCACATA 58.813 45.455 0.00 0.00 0.00 2.29
596 602 3.616821 GTGCATCGTAACAGCTCACATAA 59.383 43.478 0.00 0.00 0.00 1.90
597 603 3.616821 TGCATCGTAACAGCTCACATAAC 59.383 43.478 0.00 0.00 0.00 1.89
598 604 3.865745 GCATCGTAACAGCTCACATAACT 59.134 43.478 0.00 0.00 0.00 2.24
599 605 4.259970 GCATCGTAACAGCTCACATAACTG 60.260 45.833 0.00 0.00 37.45 3.16
600 606 4.514781 TCGTAACAGCTCACATAACTGT 57.485 40.909 0.00 0.00 46.27 3.55
601 607 5.632244 TCGTAACAGCTCACATAACTGTA 57.368 39.130 0.00 0.00 43.63 2.74
602 608 5.396484 TCGTAACAGCTCACATAACTGTAC 58.604 41.667 0.00 0.00 43.63 2.90
603 609 5.182570 TCGTAACAGCTCACATAACTGTACT 59.817 40.000 0.00 0.00 43.63 2.73
604 610 5.286320 CGTAACAGCTCACATAACTGTACTG 59.714 44.000 0.00 0.00 43.63 2.74
605 611 5.468540 AACAGCTCACATAACTGTACTGA 57.531 39.130 6.77 0.00 43.63 3.41
606 612 4.810790 ACAGCTCACATAACTGTACTGAC 58.189 43.478 6.77 0.00 42.65 3.51
607 613 4.177026 CAGCTCACATAACTGTACTGACC 58.823 47.826 6.77 0.00 34.39 4.02
608 614 3.832490 AGCTCACATAACTGTACTGACCA 59.168 43.478 6.77 0.00 33.14 4.02
609 615 4.467795 AGCTCACATAACTGTACTGACCAT 59.532 41.667 6.77 0.00 33.14 3.55
610 616 5.046304 AGCTCACATAACTGTACTGACCATT 60.046 40.000 6.77 0.00 33.14 3.16
611 617 5.063944 GCTCACATAACTGTACTGACCATTG 59.936 44.000 6.77 0.00 33.14 2.82
612 618 6.109156 TCACATAACTGTACTGACCATTGT 57.891 37.500 6.77 0.87 33.14 2.71
613 619 6.530120 TCACATAACTGTACTGACCATTGTT 58.470 36.000 6.77 0.00 33.14 2.83
614 620 6.649141 TCACATAACTGTACTGACCATTGTTC 59.351 38.462 6.77 0.00 33.14 3.18
615 621 6.426633 CACATAACTGTACTGACCATTGTTCA 59.573 38.462 6.77 0.00 33.14 3.18
616 622 6.995686 ACATAACTGTACTGACCATTGTTCAA 59.004 34.615 6.77 0.00 32.49 2.69
617 623 7.500892 ACATAACTGTACTGACCATTGTTCAAA 59.499 33.333 6.77 0.00 32.49 2.69
618 624 6.767524 AACTGTACTGACCATTGTTCAAAA 57.232 33.333 6.77 0.00 0.00 2.44
619 625 6.767524 ACTGTACTGACCATTGTTCAAAAA 57.232 33.333 6.77 0.00 0.00 1.94
652 658 2.813754 ACTGACCATCCACAATTCAACG 59.186 45.455 0.00 0.00 0.00 4.10
719 725 6.863126 GCACGCCAAATCTAAATAAGCATATT 59.137 34.615 0.00 0.00 33.06 1.28
805 821 4.154918 AGCAAAACTTAGAATGCTTCGGAG 59.845 41.667 5.63 0.00 46.36 4.63
812 828 2.114616 AGAATGCTTCGGAGGATCTGT 58.885 47.619 0.00 0.00 43.66 3.41
823 844 5.183228 TCGGAGGATCTGTAAAACAAATCC 58.817 41.667 4.53 4.53 44.24 3.01
834 855 6.987386 TGTAAAACAAATCCCAATCATTCGT 58.013 32.000 0.00 0.00 0.00 3.85
846 868 3.425713 ATTCGTGCAGGCACAGCG 61.426 61.111 22.69 10.37 46.64 5.18
866 888 1.373748 GCACATGCCCACTTGCTTG 60.374 57.895 0.00 0.00 40.95 4.01
870 892 1.255882 CATGCCCACTTGCTTGGTTA 58.744 50.000 0.00 0.00 34.44 2.85
917 939 2.666026 CATACGTGATCTCCATGACCG 58.334 52.381 0.00 0.00 35.74 4.79
1287 1319 2.029073 CTGTTCCACGAGTGCGGT 59.971 61.111 0.00 0.00 43.17 5.68
1293 1325 2.594962 CCACGAGTGCGGTGTCAAC 61.595 63.158 0.00 0.00 43.17 3.18
1337 1973 5.235186 CGCCATTAATTCTTCTACTCCACAG 59.765 44.000 0.00 0.00 0.00 3.66
1346 1997 4.335874 TCTTCTACTCCACAGTAAGATCGC 59.664 45.833 0.00 0.00 34.53 4.58
1398 2089 4.148825 GGGCTGCTCATCGACGGT 62.149 66.667 0.00 0.00 0.00 4.83
1399 2090 2.125512 GGCTGCTCATCGACGGTT 60.126 61.111 0.00 0.00 0.00 4.44
1400 2091 1.141019 GGCTGCTCATCGACGGTTA 59.859 57.895 0.00 0.00 0.00 2.85
1402 2093 0.457853 GCTGCTCATCGACGGTTACA 60.458 55.000 0.00 0.00 0.00 2.41
1458 2149 0.396417 AGGGCTACGAGCTCATCACT 60.396 55.000 15.40 2.48 46.44 3.41
1461 2152 1.205485 GCTACGAGCTCATCACTGCG 61.205 60.000 15.40 0.00 38.45 5.18
1533 2224 2.636412 CGAGGTCCTCGCAACCAGA 61.636 63.158 27.52 0.00 46.75 3.86
1539 2230 2.811317 CTCGCAACCAGAGACGCC 60.811 66.667 0.00 0.00 37.93 5.68
1758 2449 1.505477 GCATGATCAAGAGGAGCCGC 61.505 60.000 0.00 0.00 0.00 6.53
1778 2469 2.582498 GTACAGCTACGGCGGCAG 60.582 66.667 13.24 9.28 44.37 4.85
1870 2561 3.095278 CGTCGTCCGACAACACCG 61.095 66.667 18.69 1.14 44.77 4.94
1891 2582 2.747460 TGTACCTCGACGACCGGG 60.747 66.667 6.32 4.29 39.14 5.73
2030 2721 1.098712 GCCAACACCGACCACTTCAA 61.099 55.000 0.00 0.00 0.00 2.69
2084 2775 1.003718 AGGTCAAGGTGCTTACCGC 60.004 57.895 0.00 0.00 37.09 5.68
2088 2779 2.358247 AAGGTGCTTACCGCCACG 60.358 61.111 0.00 0.00 46.92 4.94
2189 2886 4.208253 GGTGTGCCTTTTGTGTTTATTTCG 59.792 41.667 0.00 0.00 0.00 3.46
2262 2971 7.043059 GGATTCATCTTGATGTACTTCGTTCTC 60.043 40.741 10.01 0.00 0.00 2.87
2263 2972 6.516739 TCATCTTGATGTACTTCGTTCTCT 57.483 37.500 10.01 0.00 0.00 3.10
2287 3005 8.087750 TCTCCATTCATTTAATTTGTGTTCCAC 58.912 33.333 0.00 0.00 34.56 4.02
2325 3043 3.245797 ACATGAACGACTGAGATCAACG 58.754 45.455 0.00 7.29 33.99 4.10
2414 4429 6.958767 ACTTAGCTAGTTGGTAATCATGGTT 58.041 36.000 0.00 0.00 37.89 3.67
2415 4430 7.402862 ACTTAGCTAGTTGGTAATCATGGTTT 58.597 34.615 0.00 0.00 37.89 3.27
2416 4431 7.888546 ACTTAGCTAGTTGGTAATCATGGTTTT 59.111 33.333 0.00 0.00 37.89 2.43
2417 4432 8.644374 TTAGCTAGTTGGTAATCATGGTTTTT 57.356 30.769 0.00 0.00 34.17 1.94
2440 4455 6.597832 TTTACCCAAAGTTGGTAATCATGG 57.402 37.500 9.20 0.00 45.27 3.66
2441 4456 6.078664 TTTACCCAAAGTTGGTAATCATGGT 58.921 36.000 9.20 0.39 45.27 3.55
2447 4462 3.356290 AGTTGGTAATCATGGTGCTTCC 58.644 45.455 0.00 0.00 0.00 3.46
2459 4474 1.071605 GTGCTTCCGACATCACTCAC 58.928 55.000 0.00 0.00 0.00 3.51
2471 4486 4.894784 ACATCACTCACTTATGACCGTTT 58.105 39.130 0.00 0.00 0.00 3.60
2515 4530 1.392589 AGTTGTGGTGTTGCAAGAGG 58.607 50.000 0.00 0.00 0.00 3.69
2599 4645 1.522806 ACACAACACACGGTCGCAT 60.523 52.632 0.00 0.00 0.00 4.73
2622 4668 2.505819 AGCTTCCTTCCGGTTGTGATAT 59.494 45.455 0.00 0.00 0.00 1.63
2648 4694 2.470983 TGTGTAGCAACATAGCAGCA 57.529 45.000 0.00 0.00 38.08 4.41
2658 4704 5.647658 AGCAACATAGCAGCAGTTATTACAA 59.352 36.000 0.00 0.00 36.85 2.41
2678 4724 6.530019 ACAAATCATAATTGGTGAGGGAAC 57.470 37.500 0.00 0.00 27.33 3.62
2755 4801 6.097129 TGTCGGTACATAGGAACAATATCACA 59.903 38.462 0.00 0.00 0.00 3.58
2756 4802 7.152645 GTCGGTACATAGGAACAATATCACAT 58.847 38.462 0.00 0.00 0.00 3.21
2769 4815 7.083875 ACAATATCACATAGGACGGTTTTTG 57.916 36.000 0.00 0.00 0.00 2.44
2810 4856 5.767665 TGCTCCTGCAGATAAACAGTAAAAA 59.232 36.000 17.39 0.00 45.31 1.94
2880 4926 8.289618 GCATGAAAGTTGAACAAGTTGTCTATA 58.710 33.333 9.40 0.00 34.45 1.31
2912 4958 7.566328 GCAAAATGTCATGACGATATGAAATGC 60.566 37.037 20.54 15.43 38.69 3.56
2960 5011 8.865001 TGAGAAACGTTCAAAATTTCGATTTTT 58.135 25.926 0.00 0.00 37.41 1.94
2970 5021 8.991026 TCAAAATTTCGATTTTTGAGCATTGAT 58.009 25.926 22.76 0.00 44.12 2.57
3011 5063 7.572814 TCACCTATGTCATATGGTCATGAAAA 58.427 34.615 17.97 0.00 36.71 2.29
3023 5075 4.141981 TGGTCATGAAAATTTGCACACACT 60.142 37.500 0.00 0.00 0.00 3.55
3024 5076 4.209703 GGTCATGAAAATTTGCACACACTG 59.790 41.667 0.00 0.00 0.00 3.66
3026 5078 5.519566 GTCATGAAAATTTGCACACACTGAA 59.480 36.000 0.00 0.00 0.00 3.02
3027 5079 5.749588 TCATGAAAATTTGCACACACTGAAG 59.250 36.000 0.00 0.00 0.00 3.02
3031 5083 4.734398 AATTTGCACACACTGAAGGAAA 57.266 36.364 0.00 0.00 0.00 3.13
3033 5085 6.403866 AATTTGCACACACTGAAGGAAATA 57.596 33.333 0.00 0.00 31.55 1.40
3034 5086 6.594788 ATTTGCACACACTGAAGGAAATAT 57.405 33.333 0.00 0.00 30.71 1.28
3035 5087 5.375417 TTGCACACACTGAAGGAAATATG 57.625 39.130 0.00 0.00 0.00 1.78
3036 5088 3.191162 TGCACACACTGAAGGAAATATGC 59.809 43.478 0.00 0.00 0.00 3.14
3038 5090 3.129287 CACACACTGAAGGAAATATGCCC 59.871 47.826 0.00 0.00 0.00 5.36
3040 5092 4.227300 ACACACTGAAGGAAATATGCCCTA 59.773 41.667 0.00 0.00 31.36 3.53
3041 5093 4.818546 CACACTGAAGGAAATATGCCCTAG 59.181 45.833 0.00 0.00 31.36 3.02
3042 5094 4.721776 ACACTGAAGGAAATATGCCCTAGA 59.278 41.667 0.00 0.00 31.36 2.43
3043 5095 5.163258 ACACTGAAGGAAATATGCCCTAGAG 60.163 44.000 0.00 0.46 31.36 2.43
3044 5096 4.349342 ACTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
3120 6524 7.672983 ATTCATGCTAGATTGTATTAACCGG 57.327 36.000 0.00 0.00 0.00 5.28
3121 6525 6.413783 TCATGCTAGATTGTATTAACCGGA 57.586 37.500 9.46 0.00 0.00 5.14
3122 6526 6.822442 TCATGCTAGATTGTATTAACCGGAA 58.178 36.000 9.46 0.00 0.00 4.30
3123 6527 7.276658 TCATGCTAGATTGTATTAACCGGAAA 58.723 34.615 9.46 1.61 0.00 3.13
3125 6529 6.646267 TGCTAGATTGTATTAACCGGAAACT 58.354 36.000 9.46 0.00 0.00 2.66
3126 6530 7.107542 TGCTAGATTGTATTAACCGGAAACTT 58.892 34.615 9.46 0.00 0.00 2.66
3127 6531 8.259411 TGCTAGATTGTATTAACCGGAAACTTA 58.741 33.333 9.46 0.00 0.00 2.24
3128 6532 8.762426 GCTAGATTGTATTAACCGGAAACTTAG 58.238 37.037 9.46 0.00 0.00 2.18
3129 6533 9.813446 CTAGATTGTATTAACCGGAAACTTAGT 57.187 33.333 9.46 0.00 0.00 2.24
3132 6536 8.722480 ATTGTATTAACCGGAAACTTAGTACC 57.278 34.615 9.46 0.00 0.00 3.34
3133 6537 7.480760 TGTATTAACCGGAAACTTAGTACCT 57.519 36.000 9.46 0.00 0.00 3.08
3134 6538 7.322664 TGTATTAACCGGAAACTTAGTACCTG 58.677 38.462 9.46 3.64 0.00 4.00
3135 6539 5.806654 TTAACCGGAAACTTAGTACCTGT 57.193 39.130 9.46 4.15 0.00 4.00
3136 6540 3.672767 ACCGGAAACTTAGTACCTGTG 57.327 47.619 9.46 0.00 0.00 3.66
3143 6547 6.309737 CGGAAACTTAGTACCTGTGTGAATAC 59.690 42.308 6.87 0.00 0.00 1.89
3155 6559 6.650807 ACCTGTGTGAATACATAGACAAACAG 59.349 38.462 0.00 0.00 45.69 3.16
3156 6560 6.873605 CCTGTGTGAATACATAGACAAACAGA 59.126 38.462 15.11 0.00 45.74 3.41
3160 6564 8.721478 GTGTGAATACATAGACAAACAGAATGT 58.279 33.333 0.00 0.00 46.47 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.471702 GGAATGGAATCCTATTCCTATGGAGGA 61.472 44.444 23.95 0.00 45.66 3.71
10 11 6.353429 GGAATGGAATCCTATTCCTATGGAGG 60.353 46.154 23.95 0.00 45.66 4.30
11 12 6.657875 GGAATGGAATCCTATTCCTATGGAG 58.342 44.000 23.95 0.00 45.66 3.86
12 13 6.642733 GGAATGGAATCCTATTCCTATGGA 57.357 41.667 23.95 0.29 45.66 3.41
24 25 5.714806 TCTTTGGTTTGTAGGAATGGAATCC 59.285 40.000 0.00 0.00 39.96 3.01
25 26 6.834168 TCTTTGGTTTGTAGGAATGGAATC 57.166 37.500 0.00 0.00 0.00 2.52
26 27 6.095440 CGATCTTTGGTTTGTAGGAATGGAAT 59.905 38.462 0.00 0.00 0.00 3.01
27 28 5.414454 CGATCTTTGGTTTGTAGGAATGGAA 59.586 40.000 0.00 0.00 0.00 3.53
28 29 4.941263 CGATCTTTGGTTTGTAGGAATGGA 59.059 41.667 0.00 0.00 0.00 3.41
29 30 4.096382 CCGATCTTTGGTTTGTAGGAATGG 59.904 45.833 0.00 0.00 0.00 3.16
30 31 4.096382 CCCGATCTTTGGTTTGTAGGAATG 59.904 45.833 0.00 0.00 0.00 2.67
31 32 4.270008 CCCGATCTTTGGTTTGTAGGAAT 58.730 43.478 0.00 0.00 0.00 3.01
32 33 3.560453 CCCCGATCTTTGGTTTGTAGGAA 60.560 47.826 0.00 0.00 0.00 3.36
33 34 2.026636 CCCCGATCTTTGGTTTGTAGGA 60.027 50.000 0.00 0.00 0.00 2.94
34 35 2.026636 TCCCCGATCTTTGGTTTGTAGG 60.027 50.000 0.00 0.00 0.00 3.18
35 36 3.270877 CTCCCCGATCTTTGGTTTGTAG 58.729 50.000 0.00 0.00 0.00 2.74
36 37 2.026636 CCTCCCCGATCTTTGGTTTGTA 60.027 50.000 0.00 0.00 0.00 2.41
37 38 1.271926 CCTCCCCGATCTTTGGTTTGT 60.272 52.381 0.00 0.00 0.00 2.83
38 39 1.004277 TCCTCCCCGATCTTTGGTTTG 59.996 52.381 0.00 0.00 0.00 2.93
39 40 1.282157 CTCCTCCCCGATCTTTGGTTT 59.718 52.381 0.00 0.00 0.00 3.27
40 41 0.912486 CTCCTCCCCGATCTTTGGTT 59.088 55.000 0.00 0.00 0.00 3.67
41 42 0.983378 CCTCCTCCCCGATCTTTGGT 60.983 60.000 0.00 0.00 0.00 3.67
42 43 0.983378 ACCTCCTCCCCGATCTTTGG 60.983 60.000 0.00 0.00 0.00 3.28
43 44 0.179000 CACCTCCTCCCCGATCTTTG 59.821 60.000 0.00 0.00 0.00 2.77
44 45 0.983378 CCACCTCCTCCCCGATCTTT 60.983 60.000 0.00 0.00 0.00 2.52
45 46 1.383248 CCACCTCCTCCCCGATCTT 60.383 63.158 0.00 0.00 0.00 2.40
46 47 2.283809 CCACCTCCTCCCCGATCT 59.716 66.667 0.00 0.00 0.00 2.75
47 48 1.834822 CTCCACCTCCTCCCCGATC 60.835 68.421 0.00 0.00 0.00 3.69
48 49 2.283809 CTCCACCTCCTCCCCGAT 59.716 66.667 0.00 0.00 0.00 4.18
77 78 2.905676 GATCTGGCCCACCCTCCTCT 62.906 65.000 0.00 0.00 33.59 3.69
90 91 1.829849 TCTCACCTCAAGCAGATCTGG 59.170 52.381 23.89 8.84 0.00 3.86
97 98 1.413118 TGTGTCTCTCACCTCAAGCA 58.587 50.000 0.00 0.00 45.61 3.91
101 102 2.037641 CACCAATGTGTCTCTCACCTCA 59.962 50.000 0.00 0.00 45.61 3.86
111 112 0.451783 GCGAATCCCACCAATGTGTC 59.548 55.000 0.00 0.00 41.09 3.67
113 114 0.452987 CTGCGAATCCCACCAATGTG 59.547 55.000 0.00 0.00 42.39 3.21
148 149 7.678598 TCAGGGTCCTATAATATTTACCAGGAG 59.321 40.741 0.00 0.00 32.98 3.69
149 150 7.550042 TCAGGGTCCTATAATATTTACCAGGA 58.450 38.462 0.00 0.00 0.00 3.86
150 151 7.808279 TCAGGGTCCTATAATATTTACCAGG 57.192 40.000 0.00 0.00 0.00 4.45
156 157 8.329502 GGCACTTATCAGGGTCCTATAATATTT 58.670 37.037 0.00 0.00 0.00 1.40
157 158 7.461043 TGGCACTTATCAGGGTCCTATAATATT 59.539 37.037 0.00 0.00 0.00 1.28
158 159 6.965866 TGGCACTTATCAGGGTCCTATAATAT 59.034 38.462 0.00 0.00 0.00 1.28
159 160 6.212791 GTGGCACTTATCAGGGTCCTATAATA 59.787 42.308 11.13 0.00 0.00 0.98
160 161 5.013183 GTGGCACTTATCAGGGTCCTATAAT 59.987 44.000 11.13 0.00 0.00 1.28
161 162 4.347000 GTGGCACTTATCAGGGTCCTATAA 59.653 45.833 11.13 0.00 0.00 0.98
162 163 3.901844 GTGGCACTTATCAGGGTCCTATA 59.098 47.826 11.13 0.00 0.00 1.31
163 164 2.706190 GTGGCACTTATCAGGGTCCTAT 59.294 50.000 11.13 0.00 0.00 2.57
164 165 2.116238 GTGGCACTTATCAGGGTCCTA 58.884 52.381 11.13 0.00 0.00 2.94
165 166 0.912486 GTGGCACTTATCAGGGTCCT 59.088 55.000 11.13 0.00 0.00 3.85
166 167 0.618458 TGTGGCACTTATCAGGGTCC 59.382 55.000 19.83 0.00 0.00 4.46
167 168 1.739067 GTGTGGCACTTATCAGGGTC 58.261 55.000 19.83 0.00 0.00 4.46
168 169 0.036388 CGTGTGGCACTTATCAGGGT 60.036 55.000 19.83 0.00 31.34 4.34
169 170 0.036388 ACGTGTGGCACTTATCAGGG 60.036 55.000 19.83 1.75 31.34 4.45
170 171 1.078709 CACGTGTGGCACTTATCAGG 58.921 55.000 19.83 6.20 31.34 3.86
171 172 1.460743 CACACGTGTGGCACTTATCAG 59.539 52.381 35.65 10.09 42.10 2.90
172 173 1.507562 CACACGTGTGGCACTTATCA 58.492 50.000 35.65 0.00 42.10 2.15
182 183 1.813337 TGTCTGTGCCACACGTGTG 60.813 57.895 36.13 36.13 45.23 3.82
183 184 1.813753 GTGTCTGTGCCACACGTGT 60.814 57.895 17.22 17.22 37.14 4.49
184 185 3.014036 GTGTCTGTGCCACACGTG 58.986 61.111 15.48 15.48 37.14 4.49
187 188 0.748005 ACCAAGTGTCTGTGCCACAC 60.748 55.000 0.00 0.00 43.92 3.82
188 189 0.833949 TACCAAGTGTCTGTGCCACA 59.166 50.000 0.00 0.00 35.24 4.17
189 190 1.602377 GTTACCAAGTGTCTGTGCCAC 59.398 52.381 0.00 0.00 0.00 5.01
190 191 1.488812 AGTTACCAAGTGTCTGTGCCA 59.511 47.619 0.00 0.00 0.00 4.92
191 192 2.143925 GAGTTACCAAGTGTCTGTGCC 58.856 52.381 0.00 0.00 0.00 5.01
192 193 2.143925 GGAGTTACCAAGTGTCTGTGC 58.856 52.381 0.00 0.00 38.79 4.57
193 194 3.469008 TGGAGTTACCAAGTGTCTGTG 57.531 47.619 0.00 0.00 46.75 3.66
208 209 9.423061 GCTTGACAATTAAAATATGTTTGGAGT 57.577 29.630 0.00 0.00 0.00 3.85
209 210 9.421806 TGCTTGACAATTAAAATATGTTTGGAG 57.578 29.630 0.00 0.00 0.00 3.86
210 211 9.941325 ATGCTTGACAATTAAAATATGTTTGGA 57.059 25.926 0.00 0.00 0.00 3.53
211 212 9.976255 CATGCTTGACAATTAAAATATGTTTGG 57.024 29.630 0.00 0.00 0.00 3.28
229 230 4.261155 CCGAAAAGAAGTTGTCATGCTTGA 60.261 41.667 0.00 0.00 0.00 3.02
230 231 3.976942 CCGAAAAGAAGTTGTCATGCTTG 59.023 43.478 0.00 0.00 0.00 4.01
231 232 3.882888 TCCGAAAAGAAGTTGTCATGCTT 59.117 39.130 0.00 0.00 0.00 3.91
232 233 3.476552 TCCGAAAAGAAGTTGTCATGCT 58.523 40.909 0.00 0.00 0.00 3.79
233 234 3.896648 TCCGAAAAGAAGTTGTCATGC 57.103 42.857 0.00 0.00 0.00 4.06
234 235 5.049474 TGTCATCCGAAAAGAAGTTGTCATG 60.049 40.000 0.00 0.00 0.00 3.07
235 236 5.063204 TGTCATCCGAAAAGAAGTTGTCAT 58.937 37.500 0.00 0.00 0.00 3.06
236 237 4.447290 TGTCATCCGAAAAGAAGTTGTCA 58.553 39.130 0.00 0.00 0.00 3.58
237 238 5.007724 ACTTGTCATCCGAAAAGAAGTTGTC 59.992 40.000 0.00 0.00 38.60 3.18
238 239 4.881850 ACTTGTCATCCGAAAAGAAGTTGT 59.118 37.500 0.00 0.00 38.60 3.32
239 240 5.424121 ACTTGTCATCCGAAAAGAAGTTG 57.576 39.130 0.00 0.00 38.60 3.16
240 241 6.094881 TGAAACTTGTCATCCGAAAAGAAGTT 59.905 34.615 0.00 0.00 38.60 2.66
241 242 5.588648 TGAAACTTGTCATCCGAAAAGAAGT 59.411 36.000 0.00 0.00 38.60 3.01
242 243 6.060028 TGAAACTTGTCATCCGAAAAGAAG 57.940 37.500 0.00 0.00 38.60 2.85
243 244 5.588648 ACTGAAACTTGTCATCCGAAAAGAA 59.411 36.000 0.00 0.00 38.60 2.52
244 245 5.123227 ACTGAAACTTGTCATCCGAAAAGA 58.877 37.500 0.00 0.00 38.60 2.52
245 246 5.424121 ACTGAAACTTGTCATCCGAAAAG 57.576 39.130 0.00 0.00 41.62 2.27
246 247 5.828299 AACTGAAACTTGTCATCCGAAAA 57.172 34.783 0.00 0.00 0.00 2.29
247 248 5.828299 AAACTGAAACTTGTCATCCGAAA 57.172 34.783 0.00 0.00 0.00 3.46
248 249 5.124776 ACAAAACTGAAACTTGTCATCCGAA 59.875 36.000 0.00 0.00 0.00 4.30
249 250 4.638421 ACAAAACTGAAACTTGTCATCCGA 59.362 37.500 0.00 0.00 0.00 4.55
250 251 4.920376 ACAAAACTGAAACTTGTCATCCG 58.080 39.130 0.00 0.00 0.00 4.18
251 252 6.589907 ACAAACAAAACTGAAACTTGTCATCC 59.410 34.615 0.00 0.00 32.21 3.51
252 253 7.581011 ACAAACAAAACTGAAACTTGTCATC 57.419 32.000 0.00 0.00 32.21 2.92
253 254 7.961325 AACAAACAAAACTGAAACTTGTCAT 57.039 28.000 0.00 0.00 32.21 3.06
254 255 7.278868 ACAAACAAACAAAACTGAAACTTGTCA 59.721 29.630 0.00 0.00 32.21 3.58
255 256 7.626446 ACAAACAAACAAAACTGAAACTTGTC 58.374 30.769 0.00 0.00 32.21 3.18
256 257 7.546778 ACAAACAAACAAAACTGAAACTTGT 57.453 28.000 0.00 0.00 34.81 3.16
257 258 8.833976 AAACAAACAAACAAAACTGAAACTTG 57.166 26.923 0.00 0.00 0.00 3.16
258 259 9.847706 AAAAACAAACAAACAAAACTGAAACTT 57.152 22.222 0.00 0.00 0.00 2.66
282 283 9.442047 TCTAAAGTTGCCATTCAAAAAGAAAAA 57.558 25.926 0.00 0.00 40.22 1.94
283 284 9.442047 TTCTAAAGTTGCCATTCAAAAAGAAAA 57.558 25.926 0.00 0.00 40.22 2.29
284 285 9.097257 CTTCTAAAGTTGCCATTCAAAAAGAAA 57.903 29.630 0.00 0.00 40.22 2.52
285 286 8.257306 ACTTCTAAAGTTGCCATTCAAAAAGAA 58.743 29.630 0.00 0.00 39.04 2.52
286 287 7.781056 ACTTCTAAAGTTGCCATTCAAAAAGA 58.219 30.769 0.00 0.00 39.04 2.52
287 288 9.528018 TTACTTCTAAAGTTGCCATTCAAAAAG 57.472 29.630 0.00 0.00 42.81 2.27
288 289 9.877178 TTTACTTCTAAAGTTGCCATTCAAAAA 57.123 25.926 0.00 0.00 42.81 1.94
289 290 9.877178 TTTTACTTCTAAAGTTGCCATTCAAAA 57.123 25.926 0.00 0.00 42.81 2.44
290 291 9.877178 TTTTTACTTCTAAAGTTGCCATTCAAA 57.123 25.926 0.00 0.00 42.81 2.69
313 314 1.607148 GCACTACGGCCTTCACTTTTT 59.393 47.619 0.00 0.00 0.00 1.94
314 315 1.202770 AGCACTACGGCCTTCACTTTT 60.203 47.619 0.00 0.00 0.00 2.27
315 316 0.396811 AGCACTACGGCCTTCACTTT 59.603 50.000 0.00 0.00 0.00 2.66
316 317 0.396811 AAGCACTACGGCCTTCACTT 59.603 50.000 0.00 0.00 0.00 3.16
317 318 0.037232 GAAGCACTACGGCCTTCACT 60.037 55.000 0.00 0.00 0.00 3.41
318 319 0.320421 TGAAGCACTACGGCCTTCAC 60.320 55.000 0.00 0.00 31.06 3.18
319 320 0.613260 ATGAAGCACTACGGCCTTCA 59.387 50.000 0.00 1.99 36.29 3.02
320 321 1.009829 CATGAAGCACTACGGCCTTC 58.990 55.000 0.00 0.00 0.00 3.46
321 322 1.026718 GCATGAAGCACTACGGCCTT 61.027 55.000 0.00 0.00 44.79 4.35
322 323 1.450312 GCATGAAGCACTACGGCCT 60.450 57.895 0.00 0.00 44.79 5.19
323 324 3.102097 GCATGAAGCACTACGGCC 58.898 61.111 0.00 0.00 44.79 6.13
352 353 9.956720 GGGATATAATTTCTCAAATGACAAGTG 57.043 33.333 0.00 0.00 0.00 3.16
353 354 9.699410 TGGGATATAATTTCTCAAATGACAAGT 57.301 29.630 0.00 0.00 0.00 3.16
359 360 9.616634 CGTCAATGGGATATAATTTCTCAAATG 57.383 33.333 0.00 0.00 0.00 2.32
360 361 9.573166 TCGTCAATGGGATATAATTTCTCAAAT 57.427 29.630 0.00 0.00 0.00 2.32
361 362 8.972458 TCGTCAATGGGATATAATTTCTCAAA 57.028 30.769 0.00 0.00 0.00 2.69
362 363 8.210946 ACTCGTCAATGGGATATAATTTCTCAA 58.789 33.333 0.00 0.00 0.00 3.02
363 364 7.657354 CACTCGTCAATGGGATATAATTTCTCA 59.343 37.037 0.00 0.00 0.00 3.27
364 365 7.118390 CCACTCGTCAATGGGATATAATTTCTC 59.882 40.741 0.00 0.00 31.83 2.87
365 366 6.936900 CCACTCGTCAATGGGATATAATTTCT 59.063 38.462 0.00 0.00 31.83 2.52
366 367 6.934645 TCCACTCGTCAATGGGATATAATTTC 59.065 38.462 0.00 0.00 36.56 2.17
430 431 2.922740 AACTTTTACACTCGGAGCCA 57.077 45.000 4.58 0.00 0.00 4.75
467 468 9.914923 CGCTCCATTTTTATTTTTATTTTAGGC 57.085 29.630 0.00 0.00 0.00 3.93
475 476 5.669164 AGGCCGCTCCATTTTTATTTTTA 57.331 34.783 0.00 0.00 37.29 1.52
479 480 3.096092 TGAAGGCCGCTCCATTTTTATT 58.904 40.909 0.00 0.00 37.29 1.40
480 481 2.733956 TGAAGGCCGCTCCATTTTTAT 58.266 42.857 0.00 0.00 37.29 1.40
481 482 2.208132 TGAAGGCCGCTCCATTTTTA 57.792 45.000 0.00 0.00 37.29 1.52
482 483 1.337118 TTGAAGGCCGCTCCATTTTT 58.663 45.000 0.00 0.00 37.29 1.94
483 484 1.337118 TTTGAAGGCCGCTCCATTTT 58.663 45.000 0.00 0.00 37.29 1.82
484 485 1.478105 GATTTGAAGGCCGCTCCATTT 59.522 47.619 0.00 0.00 37.29 2.32
485 486 1.106285 GATTTGAAGGCCGCTCCATT 58.894 50.000 0.00 0.00 37.29 3.16
486 487 1.097547 CGATTTGAAGGCCGCTCCAT 61.098 55.000 0.00 0.00 37.29 3.41
487 488 1.745115 CGATTTGAAGGCCGCTCCA 60.745 57.895 0.00 0.00 37.29 3.86
550 551 2.125673 GCGGTCGGCTCAAGCTAA 60.126 61.111 1.46 0.00 41.70 3.09
562 563 4.148825 ATGCACGAGGGAGCGGTC 62.149 66.667 5.93 5.93 35.12 4.79
578 584 5.073311 ACAGTTATGTGAGCTGTTACGAT 57.927 39.130 0.00 0.00 40.13 3.73
591 597 6.530120 TGAACAATGGTCAGTACAGTTATGT 58.470 36.000 0.00 0.00 43.76 2.29
592 598 7.433708 TTGAACAATGGTCAGTACAGTTATG 57.566 36.000 0.00 0.00 0.00 1.90
593 599 8.458573 TTTTGAACAATGGTCAGTACAGTTAT 57.541 30.769 0.00 0.00 0.00 1.89
594 600 7.867305 TTTTGAACAATGGTCAGTACAGTTA 57.133 32.000 0.00 0.00 0.00 2.24
595 601 6.767524 TTTTGAACAATGGTCAGTACAGTT 57.232 33.333 0.00 0.00 0.00 3.16
596 602 6.767524 TTTTTGAACAATGGTCAGTACAGT 57.232 33.333 0.00 0.00 0.00 3.55
624 630 4.431416 TTGTGGATGGTCAGTACAGTTT 57.569 40.909 0.00 0.00 0.00 2.66
672 678 0.981943 AGGGTGTAGCTTACCACCAC 59.018 55.000 23.37 15.78 40.03 4.16
692 698 3.486875 GCTTATTTAGATTTGGCGTGCGT 60.487 43.478 0.00 0.00 0.00 5.24
719 725 6.369890 GTCTCTTTGCTGAATGACTCATGTAA 59.630 38.462 0.00 0.00 32.14 2.41
733 739 2.417933 GTGGTATGCTGTCTCTTTGCTG 59.582 50.000 0.00 0.00 0.00 4.41
812 828 5.866633 GCACGAATGATTGGGATTTGTTTTA 59.133 36.000 0.00 0.00 0.00 1.52
823 844 0.179156 GTGCCTGCACGAATGATTGG 60.179 55.000 6.50 0.00 37.19 3.16
846 868 1.530013 AAGCAAGTGGGCATGTGCTC 61.530 55.000 6.69 0.73 46.34 4.26
866 888 6.796705 TCCGTTCTTTCTCAAATCTTAACC 57.203 37.500 0.00 0.00 0.00 2.85
870 892 7.308830 CCTTGATTCCGTTCTTTCTCAAATCTT 60.309 37.037 0.00 0.00 0.00 2.40
917 939 5.178438 GTCTCCTTGAAGTTGTCTGATGTTC 59.822 44.000 0.00 0.00 0.00 3.18
1089 1121 4.394712 AGCACCACCGCTAGCACC 62.395 66.667 16.45 0.00 41.55 5.01
1157 1189 3.887335 TTGCCCGTGTAGAACCCGC 62.887 63.158 0.00 0.00 0.00 6.13
1287 1319 4.604843 CGTAGGAGTACATACGTTGACA 57.395 45.455 13.85 0.00 46.74 3.58
1337 1973 3.922240 TCAAACACGTTAGGCGATCTTAC 59.078 43.478 0.00 0.00 44.77 2.34
1346 1997 0.511221 CGCAGGTCAAACACGTTAGG 59.489 55.000 0.00 0.00 0.00 2.69
1389 2080 0.992072 CTGTGCTGTAACCGTCGATG 59.008 55.000 0.00 0.00 0.00 3.84
1398 2089 1.336887 GCCGTCTTCTCTGTGCTGTAA 60.337 52.381 0.00 0.00 0.00 2.41
1399 2090 0.243907 GCCGTCTTCTCTGTGCTGTA 59.756 55.000 0.00 0.00 0.00 2.74
1400 2091 1.005630 GCCGTCTTCTCTGTGCTGT 60.006 57.895 0.00 0.00 0.00 4.40
1402 2093 0.106708 TTTGCCGTCTTCTCTGTGCT 59.893 50.000 0.00 0.00 0.00 4.40
1458 2149 1.139734 GAGCTCCGTCTTGATCGCA 59.860 57.895 0.87 0.00 0.00 5.10
1461 2152 1.018148 TCTCGAGCTCCGTCTTGATC 58.982 55.000 7.81 0.00 39.75 2.92
1758 2449 2.104331 CCGCCGTAGCTGTACAGG 59.896 66.667 23.95 9.29 36.60 4.00
1824 2515 1.202498 GGGCACGGGTATCTCTTGTAC 60.202 57.143 0.00 0.00 0.00 2.90
1870 2561 1.799383 GGTCGTCGAGGTACAGGAC 59.201 63.158 4.85 0.00 0.00 3.85
2030 2721 3.710722 CCTGCGGGAAGAGCCAGT 61.711 66.667 5.28 0.00 38.95 4.00
2084 2775 3.775654 GGACCTCTCCCTGCGTGG 61.776 72.222 0.00 0.00 0.00 4.94
2088 2779 4.154347 CTGCGGACCTCTCCCTGC 62.154 72.222 0.00 0.00 31.93 4.85
2292 3010 9.694520 CTCAGTCGTTCATGTTATTAGAAATTG 57.305 33.333 0.00 0.00 0.00 2.32
2422 4437 8.727889 GGAAGCACCATGATTACCAACTTTGG 62.728 46.154 6.45 6.45 45.41 3.28
2423 4438 4.789012 AGCACCATGATTACCAACTTTG 57.211 40.909 0.00 0.00 0.00 2.77
2424 4439 4.220602 GGAAGCACCATGATTACCAACTTT 59.779 41.667 0.00 0.00 38.79 2.66
2425 4440 3.763897 GGAAGCACCATGATTACCAACTT 59.236 43.478 0.00 0.00 38.79 2.66
2426 4441 3.356290 GGAAGCACCATGATTACCAACT 58.644 45.455 0.00 0.00 38.79 3.16
2427 4442 2.097466 CGGAAGCACCATGATTACCAAC 59.903 50.000 0.00 0.00 38.90 3.77
2428 4443 2.026729 TCGGAAGCACCATGATTACCAA 60.027 45.455 0.00 0.00 38.90 3.67
2429 4444 1.557371 TCGGAAGCACCATGATTACCA 59.443 47.619 0.00 0.00 38.90 3.25
2430 4445 1.940613 GTCGGAAGCACCATGATTACC 59.059 52.381 0.00 0.00 38.90 2.85
2431 4446 2.627945 TGTCGGAAGCACCATGATTAC 58.372 47.619 0.00 0.00 38.90 1.89
2432 4447 3.118445 TGATGTCGGAAGCACCATGATTA 60.118 43.478 0.00 0.00 38.90 1.75
2433 4448 2.292267 GATGTCGGAAGCACCATGATT 58.708 47.619 0.00 0.00 38.90 2.57
2434 4449 1.210234 TGATGTCGGAAGCACCATGAT 59.790 47.619 0.00 0.00 38.90 2.45
2435 4450 0.612744 TGATGTCGGAAGCACCATGA 59.387 50.000 0.00 0.00 38.90 3.07
2436 4451 0.729116 GTGATGTCGGAAGCACCATG 59.271 55.000 1.20 0.00 38.90 3.66
2437 4452 0.615331 AGTGATGTCGGAAGCACCAT 59.385 50.000 3.52 0.00 38.90 3.55
2438 4453 0.037326 GAGTGATGTCGGAAGCACCA 60.037 55.000 3.52 0.00 38.90 4.17
2439 4454 0.037326 TGAGTGATGTCGGAAGCACC 60.037 55.000 3.52 0.00 31.85 5.01
2440 4455 1.071605 GTGAGTGATGTCGGAAGCAC 58.928 55.000 0.00 0.00 0.00 4.40
2441 4456 0.969149 AGTGAGTGATGTCGGAAGCA 59.031 50.000 0.00 0.00 0.00 3.91
2447 4462 3.108881 CGGTCATAAGTGAGTGATGTCG 58.891 50.000 0.00 0.00 34.36 4.35
2459 4474 6.366332 GGTAGATGCAGATAAACGGTCATAAG 59.634 42.308 0.00 0.00 0.00 1.73
2471 4486 2.893489 AGTCATGCGGTAGATGCAGATA 59.107 45.455 0.00 0.00 46.98 1.98
2515 4530 0.531974 TGTGAAACAGAGTGACGGGC 60.532 55.000 0.00 0.00 45.67 6.13
2586 4602 0.320421 AAGCTTATGCGACCGTGTGT 60.320 50.000 0.00 0.00 45.42 3.72
2588 4604 0.739813 GGAAGCTTATGCGACCGTGT 60.740 55.000 0.00 0.00 45.42 4.49
2590 4606 0.249398 AAGGAAGCTTATGCGACCGT 59.751 50.000 0.00 0.00 45.42 4.83
2622 4668 6.324561 TGCTATGTTGCTACACATCAAAAA 57.675 33.333 2.28 0.00 38.40 1.94
2658 4704 6.069440 TGAGAGTTCCCTCACCAATTATGATT 60.069 38.462 0.00 0.00 40.40 2.57
2726 4772 8.974060 ATATTGTTCCTATGTACCGACAAAAT 57.026 30.769 0.00 0.00 39.59 1.82
2733 4779 7.759886 CCTATGTGATATTGTTCCTATGTACCG 59.240 40.741 0.00 0.00 0.00 4.02
2755 4801 3.335579 GAGCACTCAAAAACCGTCCTAT 58.664 45.455 0.00 0.00 0.00 2.57
2756 4802 2.762745 GAGCACTCAAAAACCGTCCTA 58.237 47.619 0.00 0.00 0.00 2.94
2769 4815 0.871163 GCAGATGAGCTCGAGCACTC 60.871 60.000 36.87 26.63 45.16 3.51
2880 4926 2.416296 CGTCATGACATTTTGCAGGCAT 60.416 45.455 24.93 0.00 0.00 4.40
2930 4981 7.244898 TCGAAATTTTGAACGTTTCTCAAAGA 58.755 30.769 12.29 5.42 42.21 2.52
3011 5063 4.942761 ATTTCCTTCAGTGTGTGCAAAT 57.057 36.364 0.00 0.00 0.00 2.32
3023 5075 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
3036 5088 7.881775 AACAACTTTATTATTGCCTCTAGGG 57.118 36.000 0.00 0.00 35.18 3.53
3094 6498 9.214957 CCGGTTAATACAATCTAGCATGAATAA 57.785 33.333 0.00 0.00 0.00 1.40
3095 6499 8.590204 TCCGGTTAATACAATCTAGCATGAATA 58.410 33.333 0.00 0.00 0.00 1.75
3097 6501 6.822442 TCCGGTTAATACAATCTAGCATGAA 58.178 36.000 0.00 0.00 0.00 2.57
3099 6503 7.226720 AGTTTCCGGTTAATACAATCTAGCATG 59.773 37.037 0.00 0.00 0.00 4.06
3102 6506 7.549615 AAGTTTCCGGTTAATACAATCTAGC 57.450 36.000 0.00 0.00 0.00 3.42
3103 6507 9.813446 ACTAAGTTTCCGGTTAATACAATCTAG 57.187 33.333 0.00 0.00 0.00 2.43
3106 6510 8.820933 GGTACTAAGTTTCCGGTTAATACAATC 58.179 37.037 0.00 0.00 0.00 2.67
3107 6511 8.542926 AGGTACTAAGTTTCCGGTTAATACAAT 58.457 33.333 0.00 0.00 36.02 2.71
3108 6512 7.818930 CAGGTACTAAGTTTCCGGTTAATACAA 59.181 37.037 0.00 0.00 36.02 2.41
3110 6514 7.276438 CACAGGTACTAAGTTTCCGGTTAATAC 59.724 40.741 0.00 0.00 36.02 1.89
3111 6515 7.039082 ACACAGGTACTAAGTTTCCGGTTAATA 60.039 37.037 0.00 0.00 36.02 0.98
3114 6518 4.588528 ACACAGGTACTAAGTTTCCGGTTA 59.411 41.667 0.00 0.00 36.02 2.85
3115 6519 3.389002 ACACAGGTACTAAGTTTCCGGTT 59.611 43.478 0.00 0.00 36.02 4.44
3116 6520 2.967887 ACACAGGTACTAAGTTTCCGGT 59.032 45.455 0.00 0.00 36.02 5.28
3117 6521 3.006110 TCACACAGGTACTAAGTTTCCGG 59.994 47.826 0.00 0.00 36.02 5.14
3118 6522 4.247267 TCACACAGGTACTAAGTTTCCG 57.753 45.455 0.00 0.00 36.02 4.30
3119 6523 7.156673 TGTATTCACACAGGTACTAAGTTTCC 58.843 38.462 0.00 0.00 36.02 3.13
3120 6524 8.773404 ATGTATTCACACAGGTACTAAGTTTC 57.227 34.615 0.00 0.00 37.54 2.78
3121 6525 9.871238 CTATGTATTCACACAGGTACTAAGTTT 57.129 33.333 0.00 0.00 37.54 2.66
3122 6526 9.251440 TCTATGTATTCACACAGGTACTAAGTT 57.749 33.333 0.00 0.00 37.54 2.66
3123 6527 8.684520 GTCTATGTATTCACACAGGTACTAAGT 58.315 37.037 0.00 0.00 37.54 2.24
3125 6529 8.584063 TGTCTATGTATTCACACAGGTACTAA 57.416 34.615 0.00 0.00 37.54 2.24
3126 6530 8.584063 TTGTCTATGTATTCACACAGGTACTA 57.416 34.615 0.00 0.00 37.54 1.82
3127 6531 7.476540 TTGTCTATGTATTCACACAGGTACT 57.523 36.000 0.00 0.00 37.54 2.73
3128 6532 7.601130 TGTTTGTCTATGTATTCACACAGGTAC 59.399 37.037 0.00 0.00 37.54 3.34
3129 6533 7.672240 TGTTTGTCTATGTATTCACACAGGTA 58.328 34.615 0.00 0.00 37.54 3.08
3130 6534 6.530120 TGTTTGTCTATGTATTCACACAGGT 58.470 36.000 0.00 0.00 37.54 4.00
3132 6536 7.889589 TCTGTTTGTCTATGTATTCACACAG 57.110 36.000 0.00 0.00 38.87 3.66
3133 6537 8.720562 CATTCTGTTTGTCTATGTATTCACACA 58.279 33.333 0.00 0.00 37.54 3.72
3134 6538 8.721478 ACATTCTGTTTGTCTATGTATTCACAC 58.279 33.333 0.00 0.00 37.54 3.82
3135 6539 8.846943 ACATTCTGTTTGTCTATGTATTCACA 57.153 30.769 0.00 0.00 39.52 3.58
3136 6540 8.935844 TGACATTCTGTTTGTCTATGTATTCAC 58.064 33.333 11.79 0.00 43.12 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.