Multiple sequence alignment - TraesCS5A01G398500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G398500 chr5A 100.000 2392 0 0 1 2392 592303890 592301499 0.000000e+00 4418.0
1 TraesCS5A01G398500 chr5A 84.863 839 68 33 761 1580 592474877 592474079 0.000000e+00 791.0
2 TraesCS5A01G398500 chr5A 86.740 543 34 13 1164 1699 592520098 592519587 9.590000e-159 569.0
3 TraesCS5A01G398500 chr5A 84.513 226 18 7 308 516 592475388 592475163 8.670000e-50 207.0
4 TraesCS5A01G398500 chr5A 88.667 150 17 0 501 650 592475148 592474999 1.460000e-42 183.0
5 TraesCS5A01G398500 chr5D 87.928 1665 115 32 762 2364 472746262 472744622 0.000000e+00 1882.0
6 TraesCS5A01G398500 chr5D 84.926 544 49 19 1164 1699 472768629 472768111 9.800000e-144 520.0
7 TraesCS5A01G398500 chr5D 85.000 420 23 13 308 701 472746680 472746275 8.020000e-105 390.0
8 TraesCS5A01G398500 chr5B 86.633 1197 96 35 1173 2335 580111350 580110184 0.000000e+00 1266.0
9 TraesCS5A01G398500 chr5B 89.703 942 64 13 761 1685 580115983 580115058 0.000000e+00 1171.0
10 TraesCS5A01G398500 chr5B 89.670 455 22 7 310 744 580116417 580115968 7.470000e-155 556.0
11 TraesCS5A01G398500 chr5B 81.416 565 52 29 1164 1690 580124888 580124339 1.710000e-111 412.0
12 TraesCS5A01G398500 chr5B 83.095 349 36 20 761 1100 580111807 580111473 1.800000e-76 296.0
13 TraesCS5A01G398500 chr7A 95.745 141 6 0 114 254 172916026 172915886 6.650000e-56 228.0
14 TraesCS5A01G398500 chr3A 95.070 142 7 0 114 255 378490640 378490781 8.600000e-55 224.0
15 TraesCS5A01G398500 chr3A 95.070 142 7 0 114 255 697524567 697524426 8.600000e-55 224.0
16 TraesCS5A01G398500 chr1A 95.070 142 7 0 114 255 54512116 54511975 8.600000e-55 224.0
17 TraesCS5A01G398500 chr1A 95.070 142 5 2 114 255 102989585 102989446 3.090000e-54 222.0
18 TraesCS5A01G398500 chr1A 95.070 142 6 1 114 255 352839919 352839779 3.090000e-54 222.0
19 TraesCS5A01G398500 chr6A 95.035 141 7 0 115 255 579381738 579381878 3.090000e-54 222.0
20 TraesCS5A01G398500 chr6A 95.070 142 4 2 114 255 471195366 471195228 1.110000e-53 220.0
21 TraesCS5A01G398500 chr2A 95.070 142 6 1 114 255 442518339 442518199 3.090000e-54 222.0
22 TraesCS5A01G398500 chr2A 87.719 57 5 2 1293 1348 165238067 165238122 5.520000e-07 65.8
23 TraesCS5A01G398500 chr2B 86.441 59 8 0 1293 1351 194907085 194907027 5.520000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G398500 chr5A 592301499 592303890 2391 True 4418.000000 4418 100.000000 1 2392 1 chr5A.!!$R1 2391
1 TraesCS5A01G398500 chr5A 592519587 592520098 511 True 569.000000 569 86.740000 1164 1699 1 chr5A.!!$R2 535
2 TraesCS5A01G398500 chr5A 592474079 592475388 1309 True 393.666667 791 86.014333 308 1580 3 chr5A.!!$R3 1272
3 TraesCS5A01G398500 chr5D 472744622 472746680 2058 True 1136.000000 1882 86.464000 308 2364 2 chr5D.!!$R2 2056
4 TraesCS5A01G398500 chr5D 472768111 472768629 518 True 520.000000 520 84.926000 1164 1699 1 chr5D.!!$R1 535
5 TraesCS5A01G398500 chr5B 580110184 580116417 6233 True 822.250000 1266 87.275250 310 2335 4 chr5B.!!$R2 2025
6 TraesCS5A01G398500 chr5B 580124339 580124888 549 True 412.000000 412 81.416000 1164 1690 1 chr5B.!!$R1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 1047 0.032615 CACTCCTCCAGCTCCCTACT 60.033 60.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2366 6845 0.027586 GTTTCATGCGCATACGGACC 59.972 55.0 24.84 5.99 44.64 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.766151 GTAAATTAAGAAGGCCGCAACC 58.234 45.455 0.00 0.00 0.00 3.77
22 23 1.917872 AATTAAGAAGGCCGCAACCA 58.082 45.000 0.00 0.00 0.00 3.67
23 24 1.463674 ATTAAGAAGGCCGCAACCAG 58.536 50.000 0.00 0.00 0.00 4.00
24 25 0.109723 TTAAGAAGGCCGCAACCAGT 59.890 50.000 0.00 0.00 0.00 4.00
25 26 0.321298 TAAGAAGGCCGCAACCAGTC 60.321 55.000 0.00 0.00 0.00 3.51
26 27 2.281484 GAAGGCCGCAACCAGTCA 60.281 61.111 0.00 0.00 0.00 3.41
27 28 2.594592 AAGGCCGCAACCAGTCAC 60.595 61.111 0.00 0.00 0.00 3.67
28 29 4.643387 AGGCCGCAACCAGTCACC 62.643 66.667 0.00 0.00 0.00 4.02
29 30 4.643387 GGCCGCAACCAGTCACCT 62.643 66.667 0.00 0.00 0.00 4.00
30 31 3.050275 GCCGCAACCAGTCACCTC 61.050 66.667 0.00 0.00 0.00 3.85
31 32 2.743718 CCGCAACCAGTCACCTCT 59.256 61.111 0.00 0.00 0.00 3.69
32 33 1.071471 CCGCAACCAGTCACCTCTT 59.929 57.895 0.00 0.00 0.00 2.85
33 34 1.230635 CCGCAACCAGTCACCTCTTG 61.231 60.000 0.00 0.00 0.00 3.02
34 35 1.845809 CGCAACCAGTCACCTCTTGC 61.846 60.000 0.00 0.00 0.00 4.01
35 36 1.518903 GCAACCAGTCACCTCTTGCC 61.519 60.000 0.00 0.00 0.00 4.52
36 37 0.109342 CAACCAGTCACCTCTTGCCT 59.891 55.000 0.00 0.00 0.00 4.75
37 38 0.398318 AACCAGTCACCTCTTGCCTC 59.602 55.000 0.00 0.00 0.00 4.70
38 39 1.079543 CCAGTCACCTCTTGCCTCG 60.080 63.158 0.00 0.00 0.00 4.63
39 40 1.079543 CAGTCACCTCTTGCCTCGG 60.080 63.158 0.00 0.00 0.00 4.63
40 41 2.266055 GTCACCTCTTGCCTCGGG 59.734 66.667 0.00 0.00 0.00 5.14
53 54 0.610687 CCTCGGGCAGAATATCCTCC 59.389 60.000 0.00 0.00 0.00 4.30
54 55 1.638529 CTCGGGCAGAATATCCTCCT 58.361 55.000 0.00 0.00 0.00 3.69
55 56 1.548269 CTCGGGCAGAATATCCTCCTC 59.452 57.143 0.00 0.00 0.00 3.71
56 57 0.610687 CGGGCAGAATATCCTCCTCC 59.389 60.000 0.00 0.00 0.00 4.30
57 58 0.988063 GGGCAGAATATCCTCCTCCC 59.012 60.000 0.00 0.00 0.00 4.30
58 59 1.734655 GGCAGAATATCCTCCTCCCA 58.265 55.000 0.00 0.00 0.00 4.37
59 60 2.057922 GGCAGAATATCCTCCTCCCAA 58.942 52.381 0.00 0.00 0.00 4.12
60 61 2.443255 GGCAGAATATCCTCCTCCCAAA 59.557 50.000 0.00 0.00 0.00 3.28
61 62 3.075134 GGCAGAATATCCTCCTCCCAAAT 59.925 47.826 0.00 0.00 0.00 2.32
62 63 4.331108 GCAGAATATCCTCCTCCCAAATC 58.669 47.826 0.00 0.00 0.00 2.17
63 64 4.042684 GCAGAATATCCTCCTCCCAAATCT 59.957 45.833 0.00 0.00 0.00 2.40
64 65 5.802821 GCAGAATATCCTCCTCCCAAATCTC 60.803 48.000 0.00 0.00 0.00 2.75
65 66 5.547276 CAGAATATCCTCCTCCCAAATCTCT 59.453 44.000 0.00 0.00 0.00 3.10
66 67 5.784906 AGAATATCCTCCTCCCAAATCTCTC 59.215 44.000 0.00 0.00 0.00 3.20
67 68 1.781786 TCCTCCTCCCAAATCTCTCG 58.218 55.000 0.00 0.00 0.00 4.04
68 69 1.007238 TCCTCCTCCCAAATCTCTCGT 59.993 52.381 0.00 0.00 0.00 4.18
69 70 1.410882 CCTCCTCCCAAATCTCTCGTC 59.589 57.143 0.00 0.00 0.00 4.20
70 71 1.066303 CTCCTCCCAAATCTCTCGTCG 59.934 57.143 0.00 0.00 0.00 5.12
71 72 1.103803 CCTCCCAAATCTCTCGTCGA 58.896 55.000 0.00 0.00 0.00 4.20
72 73 1.476891 CCTCCCAAATCTCTCGTCGAA 59.523 52.381 0.00 0.00 0.00 3.71
73 74 2.101582 CCTCCCAAATCTCTCGTCGAAT 59.898 50.000 0.00 0.00 0.00 3.34
74 75 3.376540 CTCCCAAATCTCTCGTCGAATC 58.623 50.000 0.00 0.00 0.00 2.52
75 76 2.120232 CCCAAATCTCTCGTCGAATCG 58.880 52.381 0.00 0.00 0.00 3.34
76 77 2.479730 CCCAAATCTCTCGTCGAATCGT 60.480 50.000 1.52 0.00 0.00 3.73
77 78 2.784380 CCAAATCTCTCGTCGAATCGTC 59.216 50.000 1.52 0.00 0.00 4.20
90 91 4.842139 CGAATCGTCGGAAGAGAAAATT 57.158 40.909 0.00 0.00 43.81 1.82
91 92 5.944049 CGAATCGTCGGAAGAGAAAATTA 57.056 39.130 0.00 0.00 43.81 1.40
92 93 6.512177 CGAATCGTCGGAAGAGAAAATTAT 57.488 37.500 0.00 0.00 43.81 1.28
93 94 6.347881 CGAATCGTCGGAAGAGAAAATTATG 58.652 40.000 0.00 0.00 43.81 1.90
94 95 6.019801 CGAATCGTCGGAAGAGAAAATTATGT 60.020 38.462 0.00 0.00 43.81 2.29
95 96 6.589830 ATCGTCGGAAGAGAAAATTATGTG 57.410 37.500 0.00 0.00 43.49 3.21
96 97 5.475719 TCGTCGGAAGAGAAAATTATGTGT 58.524 37.500 0.00 0.00 43.49 3.72
97 98 5.347635 TCGTCGGAAGAGAAAATTATGTGTG 59.652 40.000 0.00 0.00 43.49 3.82
98 99 5.120208 CGTCGGAAGAGAAAATTATGTGTGT 59.880 40.000 0.00 0.00 43.49 3.72
99 100 6.307155 GTCGGAAGAGAAAATTATGTGTGTG 58.693 40.000 0.00 0.00 43.49 3.82
100 101 5.995282 TCGGAAGAGAAAATTATGTGTGTGT 59.005 36.000 0.00 0.00 34.84 3.72
101 102 6.073276 TCGGAAGAGAAAATTATGTGTGTGTG 60.073 38.462 0.00 0.00 34.84 3.82
102 103 6.381801 GGAAGAGAAAATTATGTGTGTGTGG 58.618 40.000 0.00 0.00 0.00 4.17
103 104 5.964958 AGAGAAAATTATGTGTGTGTGGG 57.035 39.130 0.00 0.00 0.00 4.61
104 105 4.766891 AGAGAAAATTATGTGTGTGTGGGG 59.233 41.667 0.00 0.00 0.00 4.96
105 106 3.831911 AGAAAATTATGTGTGTGTGGGGG 59.168 43.478 0.00 0.00 0.00 5.40
129 130 3.532102 GGGGGATTATATGAGACCAGGT 58.468 50.000 0.00 0.00 0.00 4.00
130 131 3.519913 GGGGGATTATATGAGACCAGGTC 59.480 52.174 12.25 12.25 0.00 3.85
131 132 4.430441 GGGGATTATATGAGACCAGGTCT 58.570 47.826 23.18 23.18 46.42 3.85
138 139 4.621269 AGACCAGGTCTCACGGTT 57.379 55.556 17.31 0.00 38.71 4.44
139 140 3.759865 AGACCAGGTCTCACGGTTA 57.240 52.632 17.31 0.00 38.71 2.85
140 141 1.546961 AGACCAGGTCTCACGGTTAG 58.453 55.000 17.31 0.00 38.71 2.34
141 142 0.108756 GACCAGGTCTCACGGTTAGC 60.109 60.000 12.94 0.00 31.63 3.09
142 143 0.830444 ACCAGGTCTCACGGTTAGCA 60.830 55.000 0.00 0.00 0.00 3.49
143 144 0.108615 CCAGGTCTCACGGTTAGCAG 60.109 60.000 0.00 0.00 0.00 4.24
144 145 0.108615 CAGGTCTCACGGTTAGCAGG 60.109 60.000 0.00 0.00 0.00 4.85
145 146 0.542232 AGGTCTCACGGTTAGCAGGT 60.542 55.000 0.00 0.00 0.00 4.00
146 147 0.389948 GGTCTCACGGTTAGCAGGTG 60.390 60.000 0.00 0.00 0.00 4.00
147 148 0.601558 GTCTCACGGTTAGCAGGTGA 59.398 55.000 3.41 3.41 38.29 4.02
149 150 3.045518 TCACGGTTAGCAGGTGAGA 57.954 52.632 0.00 0.00 35.89 3.27
150 151 0.601558 TCACGGTTAGCAGGTGAGAC 59.398 55.000 0.00 0.00 35.89 3.36
151 152 0.389948 CACGGTTAGCAGGTGAGACC 60.390 60.000 0.00 0.00 38.99 3.85
152 153 1.218316 CGGTTAGCAGGTGAGACCC 59.782 63.158 0.00 0.00 39.75 4.46
153 154 1.218316 GGTTAGCAGGTGAGACCCG 59.782 63.158 0.00 0.00 39.75 5.28
154 155 1.542187 GGTTAGCAGGTGAGACCCGT 61.542 60.000 0.00 0.00 39.75 5.28
155 156 0.108756 GTTAGCAGGTGAGACCCGTC 60.109 60.000 0.00 0.00 39.75 4.79
156 157 1.255667 TTAGCAGGTGAGACCCGTCC 61.256 60.000 0.00 0.00 39.75 4.79
157 158 2.151307 TAGCAGGTGAGACCCGTCCT 62.151 60.000 0.00 0.00 39.75 3.85
158 159 1.681327 GCAGGTGAGACCCGTCCTA 60.681 63.158 0.00 0.00 39.75 2.94
159 160 1.255667 GCAGGTGAGACCCGTCCTAA 61.256 60.000 0.00 0.00 39.75 2.69
160 161 1.486211 CAGGTGAGACCCGTCCTAAT 58.514 55.000 0.00 0.00 39.75 1.73
161 162 1.137086 CAGGTGAGACCCGTCCTAATG 59.863 57.143 0.00 0.00 39.75 1.90
162 163 1.006758 AGGTGAGACCCGTCCTAATGA 59.993 52.381 0.00 0.00 39.75 2.57
163 164 1.829222 GGTGAGACCCGTCCTAATGAA 59.171 52.381 0.00 0.00 30.04 2.57
164 165 2.434702 GGTGAGACCCGTCCTAATGAAT 59.565 50.000 0.00 0.00 30.04 2.57
165 166 3.458189 GTGAGACCCGTCCTAATGAATG 58.542 50.000 0.00 0.00 0.00 2.67
166 167 3.132289 GTGAGACCCGTCCTAATGAATGA 59.868 47.826 0.00 0.00 0.00 2.57
167 168 3.132289 TGAGACCCGTCCTAATGAATGAC 59.868 47.826 0.00 0.00 0.00 3.06
168 169 3.104512 AGACCCGTCCTAATGAATGACA 58.895 45.455 0.00 0.00 0.00 3.58
169 170 3.118738 AGACCCGTCCTAATGAATGACAC 60.119 47.826 0.00 0.00 0.00 3.67
170 171 2.201732 CCCGTCCTAATGAATGACACG 58.798 52.381 0.00 0.00 0.00 4.49
171 172 2.418197 CCCGTCCTAATGAATGACACGT 60.418 50.000 0.00 0.00 0.00 4.49
172 173 2.603110 CCGTCCTAATGAATGACACGTG 59.397 50.000 15.48 15.48 0.00 4.49
173 174 2.603110 CGTCCTAATGAATGACACGTGG 59.397 50.000 21.57 1.66 0.00 4.94
174 175 2.351726 GTCCTAATGAATGACACGTGGC 59.648 50.000 21.57 19.24 0.00 5.01
175 176 2.027653 TCCTAATGAATGACACGTGGCA 60.028 45.455 29.28 29.28 37.54 4.92
181 182 3.320823 ATGACACGTGGCATTCACA 57.679 47.368 31.22 4.96 42.08 3.58
182 183 1.603456 ATGACACGTGGCATTCACAA 58.397 45.000 31.22 4.08 42.08 3.33
183 184 1.383523 TGACACGTGGCATTCACAAA 58.616 45.000 23.03 0.00 46.36 2.83
184 185 1.952990 TGACACGTGGCATTCACAAAT 59.047 42.857 23.03 0.00 46.36 2.32
185 186 2.031245 TGACACGTGGCATTCACAAATC 60.031 45.455 23.03 3.54 46.36 2.17
186 187 1.952990 ACACGTGGCATTCACAAATCA 59.047 42.857 21.57 0.00 46.36 2.57
187 188 2.287547 ACACGTGGCATTCACAAATCAC 60.288 45.455 21.57 0.00 46.36 3.06
188 189 1.952990 ACGTGGCATTCACAAATCACA 59.047 42.857 0.00 0.00 46.36 3.58
189 190 2.360483 ACGTGGCATTCACAAATCACAA 59.640 40.909 0.00 0.00 46.36 3.33
190 191 3.181482 ACGTGGCATTCACAAATCACAAA 60.181 39.130 0.00 0.00 46.36 2.83
191 192 3.426191 CGTGGCATTCACAAATCACAAAG 59.574 43.478 0.00 0.00 46.36 2.77
192 193 3.184986 GTGGCATTCACAAATCACAAAGC 59.815 43.478 0.00 0.00 45.39 3.51
193 194 3.181468 TGGCATTCACAAATCACAAAGCA 60.181 39.130 0.00 0.00 0.00 3.91
194 195 3.998341 GGCATTCACAAATCACAAAGCAT 59.002 39.130 0.00 0.00 0.00 3.79
195 196 4.092383 GGCATTCACAAATCACAAAGCATC 59.908 41.667 0.00 0.00 0.00 3.91
196 197 4.927425 GCATTCACAAATCACAAAGCATCT 59.073 37.500 0.00 0.00 0.00 2.90
197 198 6.094719 GCATTCACAAATCACAAAGCATCTA 58.905 36.000 0.00 0.00 0.00 1.98
198 199 6.587226 GCATTCACAAATCACAAAGCATCTAA 59.413 34.615 0.00 0.00 0.00 2.10
199 200 7.277098 GCATTCACAAATCACAAAGCATCTAAT 59.723 33.333 0.00 0.00 0.00 1.73
200 201 9.146984 CATTCACAAATCACAAAGCATCTAATT 57.853 29.630 0.00 0.00 0.00 1.40
201 202 9.715121 ATTCACAAATCACAAAGCATCTAATTT 57.285 25.926 0.00 0.00 0.00 1.82
202 203 8.746922 TCACAAATCACAAAGCATCTAATTTC 57.253 30.769 0.00 0.00 0.00 2.17
203 204 8.579006 TCACAAATCACAAAGCATCTAATTTCT 58.421 29.630 0.00 0.00 0.00 2.52
204 205 8.857216 CACAAATCACAAAGCATCTAATTTCTC 58.143 33.333 0.00 0.00 0.00 2.87
205 206 8.800332 ACAAATCACAAAGCATCTAATTTCTCT 58.200 29.630 0.00 0.00 0.00 3.10
206 207 9.286946 CAAATCACAAAGCATCTAATTTCTCTC 57.713 33.333 0.00 0.00 0.00 3.20
207 208 6.992063 TCACAAAGCATCTAATTTCTCTCC 57.008 37.500 0.00 0.00 0.00 3.71
208 209 5.882557 TCACAAAGCATCTAATTTCTCTCCC 59.117 40.000 0.00 0.00 0.00 4.30
209 210 5.067023 CACAAAGCATCTAATTTCTCTCCCC 59.933 44.000 0.00 0.00 0.00 4.81
210 211 4.445557 AAGCATCTAATTTCTCTCCCCC 57.554 45.455 0.00 0.00 0.00 5.40
241 242 3.100111 GGGGGTGAGGGATGCTTT 58.900 61.111 0.00 0.00 0.00 3.51
242 243 1.380380 GGGGGTGAGGGATGCTTTG 60.380 63.158 0.00 0.00 0.00 2.77
243 244 1.691219 GGGGTGAGGGATGCTTTGA 59.309 57.895 0.00 0.00 0.00 2.69
244 245 0.394899 GGGGTGAGGGATGCTTTGAG 60.395 60.000 0.00 0.00 0.00 3.02
245 246 0.620556 GGGTGAGGGATGCTTTGAGA 59.379 55.000 0.00 0.00 0.00 3.27
246 247 1.213926 GGGTGAGGGATGCTTTGAGAT 59.786 52.381 0.00 0.00 0.00 2.75
247 248 2.357569 GGGTGAGGGATGCTTTGAGATT 60.358 50.000 0.00 0.00 0.00 2.40
248 249 3.359950 GGTGAGGGATGCTTTGAGATTT 58.640 45.455 0.00 0.00 0.00 2.17
249 250 3.129988 GGTGAGGGATGCTTTGAGATTTG 59.870 47.826 0.00 0.00 0.00 2.32
250 251 3.760684 GTGAGGGATGCTTTGAGATTTGT 59.239 43.478 0.00 0.00 0.00 2.83
251 252 3.760151 TGAGGGATGCTTTGAGATTTGTG 59.240 43.478 0.00 0.00 0.00 3.33
252 253 4.012374 GAGGGATGCTTTGAGATTTGTGA 58.988 43.478 0.00 0.00 0.00 3.58
253 254 4.410099 AGGGATGCTTTGAGATTTGTGAA 58.590 39.130 0.00 0.00 0.00 3.18
254 255 5.021458 AGGGATGCTTTGAGATTTGTGAAT 58.979 37.500 0.00 0.00 0.00 2.57
255 256 5.482878 AGGGATGCTTTGAGATTTGTGAATT 59.517 36.000 0.00 0.00 0.00 2.17
256 257 5.809051 GGGATGCTTTGAGATTTGTGAATTC 59.191 40.000 0.00 0.00 0.00 2.17
257 258 6.350780 GGGATGCTTTGAGATTTGTGAATTCT 60.351 38.462 7.05 0.00 0.00 2.40
258 259 7.095270 GGATGCTTTGAGATTTGTGAATTCTT 58.905 34.615 7.05 0.00 0.00 2.52
259 260 7.601508 GGATGCTTTGAGATTTGTGAATTCTTT 59.398 33.333 7.05 0.00 0.00 2.52
260 261 8.897872 ATGCTTTGAGATTTGTGAATTCTTTT 57.102 26.923 7.05 0.00 0.00 2.27
261 262 8.356533 TGCTTTGAGATTTGTGAATTCTTTTC 57.643 30.769 7.05 0.00 0.00 2.29
262 263 7.439056 TGCTTTGAGATTTGTGAATTCTTTTCC 59.561 33.333 7.05 0.00 0.00 3.13
263 264 7.358683 GCTTTGAGATTTGTGAATTCTTTTCCG 60.359 37.037 7.05 0.00 0.00 4.30
264 265 6.633500 TGAGATTTGTGAATTCTTTTCCGT 57.367 33.333 7.05 0.00 0.00 4.69
265 266 6.437928 TGAGATTTGTGAATTCTTTTCCGTG 58.562 36.000 7.05 0.00 0.00 4.94
266 267 5.772521 AGATTTGTGAATTCTTTTCCGTGG 58.227 37.500 7.05 0.00 0.00 4.94
267 268 4.314740 TTTGTGAATTCTTTTCCGTGGG 57.685 40.909 7.05 0.00 0.00 4.61
268 269 2.235016 TGTGAATTCTTTTCCGTGGGG 58.765 47.619 7.05 0.00 0.00 4.96
269 270 2.158593 TGTGAATTCTTTTCCGTGGGGA 60.159 45.455 7.05 0.00 41.83 4.81
270 271 2.488153 GTGAATTCTTTTCCGTGGGGAG 59.512 50.000 7.05 0.00 44.98 4.30
271 272 2.092323 GAATTCTTTTCCGTGGGGAGG 58.908 52.381 0.00 0.00 44.98 4.30
272 273 0.331616 ATTCTTTTCCGTGGGGAGGG 59.668 55.000 0.00 0.00 44.98 4.30
273 274 1.785353 TTCTTTTCCGTGGGGAGGGG 61.785 60.000 0.00 0.00 44.98 4.79
274 275 2.121872 TTTTCCGTGGGGAGGGGA 60.122 61.111 0.00 0.00 44.98 4.81
275 276 2.198304 CTTTTCCGTGGGGAGGGGAG 62.198 65.000 0.00 0.00 44.98 4.30
276 277 4.733725 TTCCGTGGGGAGGGGAGG 62.734 72.222 0.00 0.00 44.98 4.30
282 283 4.601297 GGGGAGGGGAGGGGGATC 62.601 77.778 0.00 0.00 0.00 3.36
283 284 3.462501 GGGAGGGGAGGGGGATCT 61.463 72.222 0.00 0.00 0.00 2.75
284 285 2.205749 GGAGGGGAGGGGGATCTC 59.794 72.222 0.00 0.00 0.00 2.75
285 286 2.416923 GGAGGGGAGGGGGATCTCT 61.417 68.421 0.00 0.00 34.39 3.10
286 287 1.635051 GAGGGGAGGGGGATCTCTT 59.365 63.158 0.00 0.00 34.39 2.85
287 288 0.472925 GAGGGGAGGGGGATCTCTTC 60.473 65.000 0.00 0.00 34.39 2.87
288 289 1.462432 GGGGAGGGGGATCTCTTCC 60.462 68.421 7.84 7.84 44.62 3.46
289 290 1.635051 GGGAGGGGGATCTCTTCCT 59.365 63.158 13.95 3.68 44.75 3.36
290 291 0.766288 GGGAGGGGGATCTCTTCCTG 60.766 65.000 13.95 0.00 44.75 3.86
291 292 0.266152 GGAGGGGGATCTCTTCCTGA 59.734 60.000 8.82 0.00 44.75 3.86
292 293 1.715785 GAGGGGGATCTCTTCCTGAG 58.284 60.000 0.00 0.00 44.75 3.35
293 294 1.022903 AGGGGGATCTCTTCCTGAGT 58.977 55.000 0.00 0.00 44.75 3.41
294 295 1.367848 AGGGGGATCTCTTCCTGAGTT 59.632 52.381 0.00 0.00 44.75 3.01
295 296 2.200955 GGGGGATCTCTTCCTGAGTTT 58.799 52.381 0.00 0.00 44.75 2.66
296 297 2.171659 GGGGGATCTCTTCCTGAGTTTC 59.828 54.545 0.00 0.00 44.75 2.78
297 298 3.111484 GGGGATCTCTTCCTGAGTTTCT 58.889 50.000 0.00 0.00 44.75 2.52
298 299 3.133901 GGGGATCTCTTCCTGAGTTTCTC 59.866 52.174 0.00 0.00 44.75 2.87
299 300 3.181480 GGGATCTCTTCCTGAGTTTCTCG 60.181 52.174 0.00 0.00 44.75 4.04
300 301 3.445805 GGATCTCTTCCTGAGTTTCTCGT 59.554 47.826 0.00 0.00 43.13 4.18
301 302 4.081917 GGATCTCTTCCTGAGTTTCTCGTT 60.082 45.833 0.00 0.00 43.13 3.85
302 303 4.506886 TCTCTTCCTGAGTTTCTCGTTC 57.493 45.455 0.00 0.00 43.13 3.95
303 304 3.256136 TCTCTTCCTGAGTTTCTCGTTCC 59.744 47.826 0.00 0.00 43.13 3.62
304 305 2.963101 TCTTCCTGAGTTTCTCGTTCCA 59.037 45.455 0.00 0.00 32.35 3.53
305 306 2.814280 TCCTGAGTTTCTCGTTCCAC 57.186 50.000 0.00 0.00 32.35 4.02
306 307 1.000607 TCCTGAGTTTCTCGTTCCACG 60.001 52.381 0.00 0.00 44.19 4.94
377 380 7.886191 TTCTTTTGTTTTATGAAGTTCGTCG 57.114 32.000 0.00 0.00 0.00 5.12
409 412 4.330250 ACCATGCTAATCACTATGATGGC 58.670 43.478 0.00 8.95 37.15 4.40
433 439 6.347725 GCTGTCTCGTTTGTTCTATGATGTTT 60.348 38.462 0.00 0.00 0.00 2.83
435 441 5.790495 GTCTCGTTTGTTCTATGATGTTTGC 59.210 40.000 0.00 0.00 0.00 3.68
525 592 4.964897 TCTCATGTCATGTTATCCTCTGGT 59.035 41.667 12.54 0.00 0.00 4.00
537 604 8.958119 TGTTATCCTCTGGTATTGTAACATTC 57.042 34.615 0.00 0.00 0.00 2.67
553 620 7.312154 TGTAACATTCTCATGTAAATTGTGGC 58.688 34.615 0.00 0.00 43.34 5.01
650 768 6.323739 AGAAATGCAACAGTTTCCTTTTCCTA 59.676 34.615 6.85 0.00 35.46 2.94
678 799 9.531942 GACGCTCTAATATATGCTAGTAGAGTA 57.468 37.037 15.21 0.00 41.56 2.59
679 800 9.887629 ACGCTCTAATATATGCTAGTAGAGTAA 57.112 33.333 15.21 0.00 41.56 2.24
744 865 5.269991 AGCAGTCAGTAACCTATTACCTCA 58.730 41.667 0.00 0.00 41.54 3.86
745 866 5.900123 AGCAGTCAGTAACCTATTACCTCAT 59.100 40.000 0.00 0.00 41.54 2.90
746 867 6.384305 AGCAGTCAGTAACCTATTACCTCATT 59.616 38.462 0.00 0.00 41.54 2.57
747 868 7.048512 GCAGTCAGTAACCTATTACCTCATTT 58.951 38.462 0.00 0.00 41.54 2.32
748 869 8.202137 GCAGTCAGTAACCTATTACCTCATTTA 58.798 37.037 0.00 0.00 41.54 1.40
811 932 9.540538 TCATTCTTGACCCTTGGATTAAAAATA 57.459 29.630 0.00 0.00 0.00 1.40
835 956 3.566322 TGAACGGTCCAAAATAGTTGTGG 59.434 43.478 0.00 0.00 0.00 4.17
841 962 4.494484 GTCCAAAATAGTTGTGGCCATTC 58.506 43.478 9.72 2.26 32.10 2.67
926 1047 0.032615 CACTCCTCCAGCTCCCTACT 60.033 60.000 0.00 0.00 0.00 2.57
927 1048 0.260523 ACTCCTCCAGCTCCCTACTC 59.739 60.000 0.00 0.00 0.00 2.59
928 1049 0.555769 CTCCTCCAGCTCCCTACTCT 59.444 60.000 0.00 0.00 0.00 3.24
929 1050 0.553819 TCCTCCAGCTCCCTACTCTC 59.446 60.000 0.00 0.00 0.00 3.20
930 1051 0.260230 CCTCCAGCTCCCTACTCTCA 59.740 60.000 0.00 0.00 0.00 3.27
931 1052 1.342474 CCTCCAGCTCCCTACTCTCAA 60.342 57.143 0.00 0.00 0.00 3.02
932 1053 2.031120 CTCCAGCTCCCTACTCTCAAG 58.969 57.143 0.00 0.00 0.00 3.02
933 1054 1.118838 CCAGCTCCCTACTCTCAAGG 58.881 60.000 0.00 0.00 0.00 3.61
1009 1158 1.338973 AGCACACCACAATGAAGCTTG 59.661 47.619 2.10 0.00 33.05 4.01
1041 1190 1.197430 CCACTGTGGCTCTCCTCCTT 61.197 60.000 14.87 0.00 0.00 3.36
1042 1191 0.036577 CACTGTGGCTCTCCTCCTTG 60.037 60.000 0.00 0.00 0.00 3.61
1056 1205 1.407258 CTCCTTGTCCTCCTCTTAGCG 59.593 57.143 0.00 0.00 0.00 4.26
1114 1263 3.499537 TCAGTTCAGTGATGTGTTGATGC 59.500 43.478 0.00 0.00 0.00 3.91
1194 5569 1.595109 TGGTGCGTGTGCTCTTGAG 60.595 57.895 0.00 0.00 43.34 3.02
1410 5791 4.351054 CCACCACCACCCTCCAGC 62.351 72.222 0.00 0.00 0.00 4.85
1601 6028 1.078708 TAGCTACTGGTTTGCCGGC 60.079 57.895 22.73 22.73 45.10 6.13
1735 6190 4.201901 TGTGTTGTGTGTGAGCATAGTTTG 60.202 41.667 0.00 0.00 0.00 2.93
1770 6225 4.891727 GGGGCACGCGATCGATGT 62.892 66.667 21.57 13.62 39.41 3.06
1814 6269 2.990994 GATGGGATGGGGCCTTGCTC 62.991 65.000 0.84 0.00 0.00 4.26
1831 6292 1.467713 GCTCCGTTCAGTTACTCCTCG 60.468 57.143 0.00 0.00 0.00 4.63
1832 6293 1.811359 CTCCGTTCAGTTACTCCTCGT 59.189 52.381 0.00 0.00 0.00 4.18
1841 6302 2.891580 AGTTACTCCTCGTCTGAAAGCA 59.108 45.455 0.00 0.00 0.00 3.91
1843 6304 0.037790 ACTCCTCGTCTGAAAGCAGC 60.038 55.000 0.00 0.00 42.01 5.25
1877 6339 1.078759 GTGACGCGTCAGGGATTGAG 61.079 60.000 39.98 0.00 40.75 3.02
1907 6369 4.504916 CCGCCCTCGCTGAGTCAG 62.505 72.222 16.21 16.21 34.12 3.51
2014 6480 0.392998 TGAAGCTCGGATGGGAAAGC 60.393 55.000 0.00 0.00 34.95 3.51
2061 6527 1.592400 CTCGTCCCGGTACAGAAGCA 61.592 60.000 0.00 0.00 0.00 3.91
2062 6528 1.445582 CGTCCCGGTACAGAAGCAC 60.446 63.158 0.00 0.00 0.00 4.40
2156 6627 1.334556 GGCAGCACGATTAATGCATGA 59.665 47.619 0.00 0.00 45.92 3.07
2183 6654 2.025605 AGGATGAAATCTGAGCTTGGCA 60.026 45.455 0.00 0.00 44.71 4.92
2192 6663 0.183492 TGAGCTTGGCAGGTCTGTTT 59.817 50.000 14.19 0.00 46.24 2.83
2193 6664 1.419762 TGAGCTTGGCAGGTCTGTTTA 59.580 47.619 14.19 0.00 46.24 2.01
2196 6667 1.541588 GCTTGGCAGGTCTGTTTAAGG 59.458 52.381 0.00 0.00 0.00 2.69
2202 6673 3.243737 GGCAGGTCTGTTTAAGGTTTTGG 60.244 47.826 0.00 0.00 0.00 3.28
2203 6674 3.798889 GCAGGTCTGTTTAAGGTTTTGGC 60.799 47.826 0.00 0.00 0.00 4.52
2208 6679 3.769844 TCTGTTTAAGGTTTTGGCACCAA 59.230 39.130 0.00 0.00 39.62 3.67
2212 6683 2.636647 AAGGTTTTGGCACCAAATGG 57.363 45.000 15.28 0.00 44.14 3.16
2219 6690 4.679412 GCACCAAATGGCCTGTTG 57.321 55.556 3.32 8.19 39.32 3.33
2221 6692 1.373246 CACCAAATGGCCTGTTGCG 60.373 57.895 3.32 5.28 42.61 4.85
2222 6693 2.262292 CCAAATGGCCTGTTGCGG 59.738 61.111 3.32 0.20 42.61 5.69
2241 6715 2.286772 CGGGTGAAAACTTTTGACCTCG 60.287 50.000 18.79 16.39 0.00 4.63
2243 6717 2.372350 GTGAAAACTTTTGACCTCGCG 58.628 47.619 0.00 0.00 0.00 5.87
2245 6719 2.286833 TGAAAACTTTTGACCTCGCGAG 59.713 45.455 29.06 29.06 0.00 5.03
2254 6729 2.509336 CCTCGCGAGATTTGCCGT 60.509 61.111 36.59 0.00 40.84 5.68
2266 6741 0.515127 TTTGCCGTTGATGCACTACG 59.485 50.000 13.17 13.17 44.47 3.51
2268 6743 2.100631 GCCGTTGATGCACTACGCT 61.101 57.895 14.15 0.00 43.80 5.07
2270 6745 0.921347 CCGTTGATGCACTACGCTAC 59.079 55.000 14.15 0.00 43.80 3.58
2271 6746 1.624487 CGTTGATGCACTACGCTACA 58.376 50.000 9.33 0.00 43.06 2.74
2272 6747 1.320555 CGTTGATGCACTACGCTACAC 59.679 52.381 9.33 0.00 43.06 2.90
2273 6748 2.333926 GTTGATGCACTACGCTACACA 58.666 47.619 0.00 0.00 43.06 3.72
2274 6749 2.734276 TGATGCACTACGCTACACAA 57.266 45.000 0.00 0.00 43.06 3.33
2275 6750 2.333926 TGATGCACTACGCTACACAAC 58.666 47.619 0.00 0.00 43.06 3.32
2276 6751 1.320555 GATGCACTACGCTACACAACG 59.679 52.381 0.00 0.00 43.06 4.10
2277 6752 0.031043 TGCACTACGCTACACAACGT 59.969 50.000 0.00 0.00 45.85 3.99
2278 6753 0.433492 GCACTACGCTACACAACGTG 59.567 55.000 0.00 0.00 43.44 4.49
2279 6754 4.712630 TGCACTACGCTACACAACGTGT 62.713 50.000 4.98 4.98 43.70 4.49
2280 6755 2.917714 GCACTACGCTACACAACGTGTA 60.918 50.000 6.78 6.78 46.42 2.90
2293 6772 2.460757 ACGTGTATAGGGCGTGTTTT 57.539 45.000 0.00 0.00 37.47 2.43
2305 6784 0.248054 CGTGTTTTGTTGCTCGCACT 60.248 50.000 0.00 0.00 0.00 4.40
2310 6789 3.242608 TGTTTTGTTGCTCGCACTAACTC 60.243 43.478 0.00 0.00 0.00 3.01
2311 6790 2.526304 TTGTTGCTCGCACTAACTCT 57.474 45.000 0.00 0.00 0.00 3.24
2316 6795 2.592194 TGCTCGCACTAACTCTAAACG 58.408 47.619 0.00 0.00 0.00 3.60
2317 6796 1.918609 GCTCGCACTAACTCTAAACGG 59.081 52.381 0.00 0.00 0.00 4.44
2320 6799 1.403780 CGCACTAACTCTAAACGGGCT 60.404 52.381 0.00 0.00 0.00 5.19
2321 6800 2.269172 GCACTAACTCTAAACGGGCTC 58.731 52.381 0.00 0.00 0.00 4.70
2351 6830 9.807649 GGATACAAAAAGAGCATATTTGATTGT 57.192 29.630 10.09 7.17 37.46 2.71
2355 6834 9.715121 ACAAAAAGAGCATATTTGATTGTTCAT 57.285 25.926 10.09 0.00 37.46 2.57
2364 6843 7.541162 CATATTTGATTGTTCATGTGAGGTGT 58.459 34.615 0.00 0.00 0.00 4.16
2365 6844 5.850557 TTTGATTGTTCATGTGAGGTGTT 57.149 34.783 0.00 0.00 0.00 3.32
2366 6845 4.834357 TGATTGTTCATGTGAGGTGTTG 57.166 40.909 0.00 0.00 0.00 3.33
2367 6846 3.569277 TGATTGTTCATGTGAGGTGTTGG 59.431 43.478 0.00 0.00 0.00 3.77
2368 6847 2.727123 TGTTCATGTGAGGTGTTGGT 57.273 45.000 0.00 0.00 0.00 3.67
2369 6848 2.571212 TGTTCATGTGAGGTGTTGGTC 58.429 47.619 0.00 0.00 0.00 4.02
2370 6849 1.880027 GTTCATGTGAGGTGTTGGTCC 59.120 52.381 0.00 0.00 0.00 4.46
2371 6850 0.034756 TCATGTGAGGTGTTGGTCCG 59.965 55.000 0.00 0.00 0.00 4.79
2372 6851 0.250295 CATGTGAGGTGTTGGTCCGT 60.250 55.000 0.00 0.00 0.00 4.69
2373 6852 1.001520 CATGTGAGGTGTTGGTCCGTA 59.998 52.381 0.00 0.00 0.00 4.02
2374 6853 1.344065 TGTGAGGTGTTGGTCCGTAT 58.656 50.000 0.00 0.00 0.00 3.06
2375 6854 1.001520 TGTGAGGTGTTGGTCCGTATG 59.998 52.381 0.00 0.00 0.00 2.39
2376 6855 0.036765 TGAGGTGTTGGTCCGTATGC 60.037 55.000 0.00 0.00 0.00 3.14
2377 6856 1.079405 AGGTGTTGGTCCGTATGCG 60.079 57.895 0.00 0.00 37.95 4.73
2378 6857 2.746803 GGTGTTGGTCCGTATGCGC 61.747 63.158 0.00 0.00 36.67 6.09
2379 6858 2.030401 GTGTTGGTCCGTATGCGCA 61.030 57.895 14.96 14.96 36.67 6.09
2380 6859 1.078778 TGTTGGTCCGTATGCGCAT 60.079 52.632 28.23 28.23 36.67 4.73
2381 6860 1.351707 GTTGGTCCGTATGCGCATG 59.648 57.895 32.48 16.73 36.67 4.06
2382 6861 1.087202 GTTGGTCCGTATGCGCATGA 61.087 55.000 32.48 18.52 36.67 3.07
2383 6862 0.391793 TTGGTCCGTATGCGCATGAA 60.392 50.000 32.48 11.38 36.67 2.57
2384 6863 0.391793 TGGTCCGTATGCGCATGAAA 60.392 50.000 32.48 10.54 36.67 2.69
2385 6864 0.027586 GGTCCGTATGCGCATGAAAC 59.972 55.000 32.48 21.12 36.67 2.78
2386 6865 1.006832 GTCCGTATGCGCATGAAACT 58.993 50.000 32.48 8.85 36.67 2.66
2387 6866 1.004927 GTCCGTATGCGCATGAAACTC 60.005 52.381 32.48 14.11 36.67 3.01
2388 6867 1.006086 CCGTATGCGCATGAAACTCA 58.994 50.000 32.48 8.02 36.67 3.41
2389 6868 1.396648 CCGTATGCGCATGAAACTCAA 59.603 47.619 32.48 7.18 36.67 3.02
2390 6869 2.159585 CCGTATGCGCATGAAACTCAAA 60.160 45.455 32.48 6.36 36.67 2.69
2391 6870 3.093574 CGTATGCGCATGAAACTCAAAG 58.906 45.455 32.48 8.57 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.191791 TGGTTGCGGCCTTCTTAATTTAC 59.808 43.478 0.00 0.00 0.00 2.01
1 2 3.422796 TGGTTGCGGCCTTCTTAATTTA 58.577 40.909 0.00 0.00 0.00 1.40
2 3 2.231235 CTGGTTGCGGCCTTCTTAATTT 59.769 45.455 0.00 0.00 0.00 1.82
3 4 1.818674 CTGGTTGCGGCCTTCTTAATT 59.181 47.619 0.00 0.00 0.00 1.40
4 5 1.271926 ACTGGTTGCGGCCTTCTTAAT 60.272 47.619 0.00 0.00 0.00 1.40
5 6 0.109723 ACTGGTTGCGGCCTTCTTAA 59.890 50.000 0.00 0.00 0.00 1.85
6 7 0.321298 GACTGGTTGCGGCCTTCTTA 60.321 55.000 0.00 0.00 0.00 2.10
7 8 1.600916 GACTGGTTGCGGCCTTCTT 60.601 57.895 0.00 0.00 0.00 2.52
8 9 2.032681 GACTGGTTGCGGCCTTCT 59.967 61.111 0.00 0.00 0.00 2.85
9 10 2.281484 TGACTGGTTGCGGCCTTC 60.281 61.111 0.00 0.00 0.00 3.46
10 11 2.594592 GTGACTGGTTGCGGCCTT 60.595 61.111 0.00 0.00 0.00 4.35
11 12 4.643387 GGTGACTGGTTGCGGCCT 62.643 66.667 0.00 0.00 0.00 5.19
12 13 4.643387 AGGTGACTGGTTGCGGCC 62.643 66.667 0.00 0.00 41.13 6.13
13 14 3.050275 GAGGTGACTGGTTGCGGC 61.050 66.667 0.00 0.00 44.43 6.53
14 15 1.071471 AAGAGGTGACTGGTTGCGG 59.929 57.895 0.00 0.00 44.43 5.69
15 16 1.845809 GCAAGAGGTGACTGGTTGCG 61.846 60.000 0.00 0.00 43.35 4.85
16 17 1.952263 GCAAGAGGTGACTGGTTGC 59.048 57.895 0.00 0.00 44.95 4.17
17 18 2.633860 GGCAAGAGGTGACTGGTTG 58.366 57.895 0.00 0.00 44.43 3.77
23 24 2.266055 CCCGAGGCAAGAGGTGAC 59.734 66.667 0.00 0.00 34.17 3.67
34 35 0.610687 GGAGGATATTCTGCCCGAGG 59.389 60.000 0.00 0.00 0.00 4.63
35 36 1.548269 GAGGAGGATATTCTGCCCGAG 59.452 57.143 0.00 0.00 0.00 4.63
36 37 1.633774 GAGGAGGATATTCTGCCCGA 58.366 55.000 0.00 0.00 0.00 5.14
37 38 0.610687 GGAGGAGGATATTCTGCCCG 59.389 60.000 0.00 0.00 0.00 6.13
38 39 0.988063 GGGAGGAGGATATTCTGCCC 59.012 60.000 0.00 0.52 33.64 5.36
39 40 1.734655 TGGGAGGAGGATATTCTGCC 58.265 55.000 0.00 0.19 39.12 4.85
40 41 3.864789 TTTGGGAGGAGGATATTCTGC 57.135 47.619 0.00 0.00 0.00 4.26
41 42 5.547276 AGAGATTTGGGAGGAGGATATTCTG 59.453 44.000 0.00 0.00 0.00 3.02
42 43 5.736237 AGAGATTTGGGAGGAGGATATTCT 58.264 41.667 0.00 0.00 0.00 2.40
43 44 5.337169 CGAGAGATTTGGGAGGAGGATATTC 60.337 48.000 0.00 0.00 0.00 1.75
44 45 4.530161 CGAGAGATTTGGGAGGAGGATATT 59.470 45.833 0.00 0.00 0.00 1.28
45 46 4.093011 CGAGAGATTTGGGAGGAGGATAT 58.907 47.826 0.00 0.00 0.00 1.63
46 47 3.117093 ACGAGAGATTTGGGAGGAGGATA 60.117 47.826 0.00 0.00 0.00 2.59
47 48 2.324541 CGAGAGATTTGGGAGGAGGAT 58.675 52.381 0.00 0.00 0.00 3.24
48 49 1.007238 ACGAGAGATTTGGGAGGAGGA 59.993 52.381 0.00 0.00 0.00 3.71
49 50 1.410882 GACGAGAGATTTGGGAGGAGG 59.589 57.143 0.00 0.00 0.00 4.30
50 51 1.066303 CGACGAGAGATTTGGGAGGAG 59.934 57.143 0.00 0.00 0.00 3.69
51 52 1.103803 CGACGAGAGATTTGGGAGGA 58.896 55.000 0.00 0.00 0.00 3.71
52 53 1.103803 TCGACGAGAGATTTGGGAGG 58.896 55.000 0.00 0.00 0.00 4.30
53 54 2.941453 TTCGACGAGAGATTTGGGAG 57.059 50.000 0.00 0.00 0.00 4.30
54 55 2.223502 CGATTCGACGAGAGATTTGGGA 60.224 50.000 0.00 0.00 35.09 4.37
55 56 2.120232 CGATTCGACGAGAGATTTGGG 58.880 52.381 0.00 0.00 35.09 4.12
56 57 2.784380 GACGATTCGACGAGAGATTTGG 59.216 50.000 13.95 0.00 37.03 3.28
69 70 4.842139 AATTTTCTCTTCCGACGATTCG 57.158 40.909 4.14 4.14 45.44 3.34
70 71 7.119997 CACATAATTTTCTCTTCCGACGATTC 58.880 38.462 0.00 0.00 0.00 2.52
71 72 6.594159 ACACATAATTTTCTCTTCCGACGATT 59.406 34.615 0.00 0.00 0.00 3.34
72 73 6.036083 CACACATAATTTTCTCTTCCGACGAT 59.964 38.462 0.00 0.00 0.00 3.73
73 74 5.347635 CACACATAATTTTCTCTTCCGACGA 59.652 40.000 0.00 0.00 0.00 4.20
74 75 5.120208 ACACACATAATTTTCTCTTCCGACG 59.880 40.000 0.00 0.00 0.00 5.12
75 76 6.073222 ACACACACATAATTTTCTCTTCCGAC 60.073 38.462 0.00 0.00 0.00 4.79
76 77 5.995282 ACACACACATAATTTTCTCTTCCGA 59.005 36.000 0.00 0.00 0.00 4.55
77 78 6.079763 CACACACACATAATTTTCTCTTCCG 58.920 40.000 0.00 0.00 0.00 4.30
78 79 6.381801 CCACACACACATAATTTTCTCTTCC 58.618 40.000 0.00 0.00 0.00 3.46
79 80 6.381801 CCCACACACACATAATTTTCTCTTC 58.618 40.000 0.00 0.00 0.00 2.87
80 81 5.243730 CCCCACACACACATAATTTTCTCTT 59.756 40.000 0.00 0.00 0.00 2.85
81 82 4.766891 CCCCACACACACATAATTTTCTCT 59.233 41.667 0.00 0.00 0.00 3.10
82 83 4.082245 CCCCCACACACACATAATTTTCTC 60.082 45.833 0.00 0.00 0.00 2.87
83 84 3.831911 CCCCCACACACACATAATTTTCT 59.168 43.478 0.00 0.00 0.00 2.52
84 85 4.186856 CCCCCACACACACATAATTTTC 57.813 45.455 0.00 0.00 0.00 2.29
108 109 3.519913 GACCTGGTCTCATATAATCCCCC 59.480 52.174 19.53 0.00 0.00 5.40
109 110 4.430441 AGACCTGGTCTCATATAATCCCC 58.570 47.826 23.49 0.00 38.71 4.81
121 122 1.546961 CTAACCGTGAGACCTGGTCT 58.453 55.000 28.70 28.70 46.42 3.85
122 123 0.108756 GCTAACCGTGAGACCTGGTC 60.109 60.000 19.20 19.20 34.11 4.02
123 124 0.830444 TGCTAACCGTGAGACCTGGT 60.830 55.000 0.00 0.00 37.68 4.00
124 125 0.108615 CTGCTAACCGTGAGACCTGG 60.109 60.000 0.00 0.00 0.00 4.45
125 126 0.108615 CCTGCTAACCGTGAGACCTG 60.109 60.000 0.00 0.00 0.00 4.00
126 127 0.542232 ACCTGCTAACCGTGAGACCT 60.542 55.000 0.00 0.00 0.00 3.85
127 128 0.389948 CACCTGCTAACCGTGAGACC 60.390 60.000 0.00 0.00 0.00 3.85
128 129 0.601558 TCACCTGCTAACCGTGAGAC 59.398 55.000 0.00 0.00 32.85 3.36
129 130 3.045518 TCACCTGCTAACCGTGAGA 57.954 52.632 0.00 0.00 32.85 3.27
130 131 3.425578 CTCACCTGCTAACCGTGAG 57.574 57.895 2.35 2.35 45.33 3.51
131 132 0.601558 GTCTCACCTGCTAACCGTGA 59.398 55.000 0.00 0.00 35.34 4.35
132 133 0.389948 GGTCTCACCTGCTAACCGTG 60.390 60.000 0.00 0.00 34.73 4.94
133 134 1.542187 GGGTCTCACCTGCTAACCGT 61.542 60.000 0.00 0.00 38.64 4.83
134 135 1.218316 GGGTCTCACCTGCTAACCG 59.782 63.158 0.00 0.00 38.64 4.44
135 136 1.218316 CGGGTCTCACCTGCTAACC 59.782 63.158 0.00 0.00 37.90 2.85
136 137 4.913126 CGGGTCTCACCTGCTAAC 57.087 61.111 0.00 0.00 37.90 2.34
142 143 1.006758 TCATTAGGACGGGTCTCACCT 59.993 52.381 0.00 0.00 38.64 4.00
143 144 1.481871 TCATTAGGACGGGTCTCACC 58.518 55.000 0.00 0.00 37.60 4.02
144 145 3.132289 TCATTCATTAGGACGGGTCTCAC 59.868 47.826 0.00 0.00 0.00 3.51
145 146 3.132289 GTCATTCATTAGGACGGGTCTCA 59.868 47.826 0.00 0.00 0.00 3.27
146 147 3.132289 TGTCATTCATTAGGACGGGTCTC 59.868 47.826 0.00 0.00 34.32 3.36
147 148 3.104512 TGTCATTCATTAGGACGGGTCT 58.895 45.455 0.00 0.00 34.32 3.85
148 149 3.195661 GTGTCATTCATTAGGACGGGTC 58.804 50.000 0.00 0.00 34.32 4.46
149 150 2.418197 CGTGTCATTCATTAGGACGGGT 60.418 50.000 0.00 0.00 34.32 5.28
150 151 2.201732 CGTGTCATTCATTAGGACGGG 58.798 52.381 0.00 0.00 34.32 5.28
151 152 2.603110 CACGTGTCATTCATTAGGACGG 59.397 50.000 7.58 0.00 34.32 4.79
152 153 2.603110 CCACGTGTCATTCATTAGGACG 59.397 50.000 15.65 0.00 34.32 4.79
153 154 2.351726 GCCACGTGTCATTCATTAGGAC 59.648 50.000 15.65 0.00 0.00 3.85
154 155 2.027653 TGCCACGTGTCATTCATTAGGA 60.028 45.455 15.65 0.00 0.00 2.94
155 156 2.355197 TGCCACGTGTCATTCATTAGG 58.645 47.619 15.65 0.00 0.00 2.69
156 157 4.591202 GAATGCCACGTGTCATTCATTAG 58.409 43.478 35.00 11.24 44.71 1.73
157 158 4.614555 GAATGCCACGTGTCATTCATTA 57.385 40.909 35.00 0.30 44.71 1.90
158 159 3.492421 GAATGCCACGTGTCATTCATT 57.508 42.857 35.00 23.71 44.71 2.57
161 162 2.247311 GTGAATGCCACGTGTCATTC 57.753 50.000 33.99 33.99 45.24 2.67
170 171 3.184986 GCTTTGTGATTTGTGAATGCCAC 59.815 43.478 0.00 0.00 45.88 5.01
171 172 3.181468 TGCTTTGTGATTTGTGAATGCCA 60.181 39.130 0.00 0.00 0.00 4.92
172 173 3.391965 TGCTTTGTGATTTGTGAATGCC 58.608 40.909 0.00 0.00 0.00 4.40
173 174 4.927425 AGATGCTTTGTGATTTGTGAATGC 59.073 37.500 0.00 0.00 0.00 3.56
174 175 8.697846 ATTAGATGCTTTGTGATTTGTGAATG 57.302 30.769 0.00 0.00 0.00 2.67
175 176 9.715121 AAATTAGATGCTTTGTGATTTGTGAAT 57.285 25.926 0.00 0.00 0.00 2.57
176 177 9.195411 GAAATTAGATGCTTTGTGATTTGTGAA 57.805 29.630 0.00 0.00 0.00 3.18
177 178 8.579006 AGAAATTAGATGCTTTGTGATTTGTGA 58.421 29.630 0.00 0.00 0.00 3.58
178 179 8.752766 AGAAATTAGATGCTTTGTGATTTGTG 57.247 30.769 0.00 0.00 0.00 3.33
179 180 8.800332 AGAGAAATTAGATGCTTTGTGATTTGT 58.200 29.630 0.00 0.00 0.00 2.83
180 181 9.286946 GAGAGAAATTAGATGCTTTGTGATTTG 57.713 33.333 0.00 0.00 0.00 2.32
181 182 8.465201 GGAGAGAAATTAGATGCTTTGTGATTT 58.535 33.333 0.00 0.00 0.00 2.17
182 183 7.067981 GGGAGAGAAATTAGATGCTTTGTGATT 59.932 37.037 0.00 0.00 0.00 2.57
183 184 6.545298 GGGAGAGAAATTAGATGCTTTGTGAT 59.455 38.462 0.00 0.00 0.00 3.06
184 185 5.882557 GGGAGAGAAATTAGATGCTTTGTGA 59.117 40.000 0.00 0.00 0.00 3.58
185 186 5.067023 GGGGAGAGAAATTAGATGCTTTGTG 59.933 44.000 0.00 0.00 0.00 3.33
186 187 5.196695 GGGGAGAGAAATTAGATGCTTTGT 58.803 41.667 0.00 0.00 0.00 2.83
187 188 4.582240 GGGGGAGAGAAATTAGATGCTTTG 59.418 45.833 0.00 0.00 0.00 2.77
188 189 4.797743 GGGGGAGAGAAATTAGATGCTTT 58.202 43.478 0.00 0.00 0.00 3.51
189 190 4.445557 GGGGGAGAGAAATTAGATGCTT 57.554 45.455 0.00 0.00 0.00 3.91
224 225 1.380380 CAAAGCATCCCTCACCCCC 60.380 63.158 0.00 0.00 0.00 5.40
225 226 0.394899 CTCAAAGCATCCCTCACCCC 60.395 60.000 0.00 0.00 0.00 4.95
226 227 0.620556 TCTCAAAGCATCCCTCACCC 59.379 55.000 0.00 0.00 0.00 4.61
227 228 2.725221 ATCTCAAAGCATCCCTCACC 57.275 50.000 0.00 0.00 0.00 4.02
228 229 3.760684 ACAAATCTCAAAGCATCCCTCAC 59.239 43.478 0.00 0.00 0.00 3.51
229 230 3.760151 CACAAATCTCAAAGCATCCCTCA 59.240 43.478 0.00 0.00 0.00 3.86
230 231 4.012374 TCACAAATCTCAAAGCATCCCTC 58.988 43.478 0.00 0.00 0.00 4.30
231 232 4.038271 TCACAAATCTCAAAGCATCCCT 57.962 40.909 0.00 0.00 0.00 4.20
232 233 4.789012 TTCACAAATCTCAAAGCATCCC 57.211 40.909 0.00 0.00 0.00 3.85
233 234 6.628185 AGAATTCACAAATCTCAAAGCATCC 58.372 36.000 8.44 0.00 0.00 3.51
234 235 8.530269 AAAGAATTCACAAATCTCAAAGCATC 57.470 30.769 8.44 0.00 0.00 3.91
235 236 8.897872 AAAAGAATTCACAAATCTCAAAGCAT 57.102 26.923 8.44 0.00 0.00 3.79
236 237 7.439056 GGAAAAGAATTCACAAATCTCAAAGCA 59.561 33.333 8.44 0.00 0.00 3.91
237 238 7.358683 CGGAAAAGAATTCACAAATCTCAAAGC 60.359 37.037 8.44 0.00 0.00 3.51
238 239 7.649306 ACGGAAAAGAATTCACAAATCTCAAAG 59.351 33.333 8.44 0.00 0.00 2.77
239 240 7.434897 CACGGAAAAGAATTCACAAATCTCAAA 59.565 33.333 8.44 0.00 0.00 2.69
240 241 6.917477 CACGGAAAAGAATTCACAAATCTCAA 59.083 34.615 8.44 0.00 0.00 3.02
241 242 6.437928 CACGGAAAAGAATTCACAAATCTCA 58.562 36.000 8.44 0.00 0.00 3.27
242 243 5.858581 CCACGGAAAAGAATTCACAAATCTC 59.141 40.000 8.44 0.00 0.00 2.75
243 244 5.278957 CCCACGGAAAAGAATTCACAAATCT 60.279 40.000 8.44 0.00 0.00 2.40
244 245 4.923281 CCCACGGAAAAGAATTCACAAATC 59.077 41.667 8.44 0.00 0.00 2.17
245 246 4.262420 CCCCACGGAAAAGAATTCACAAAT 60.262 41.667 8.44 0.00 0.00 2.32
246 247 3.068873 CCCCACGGAAAAGAATTCACAAA 59.931 43.478 8.44 0.00 0.00 2.83
247 248 2.625790 CCCCACGGAAAAGAATTCACAA 59.374 45.455 8.44 0.00 0.00 3.33
248 249 2.158593 TCCCCACGGAAAAGAATTCACA 60.159 45.455 8.44 0.00 34.19 3.58
249 250 2.488153 CTCCCCACGGAAAAGAATTCAC 59.512 50.000 8.44 0.00 37.86 3.18
250 251 2.554344 CCTCCCCACGGAAAAGAATTCA 60.554 50.000 8.44 0.00 37.86 2.57
251 252 2.092323 CCTCCCCACGGAAAAGAATTC 58.908 52.381 0.00 0.00 37.86 2.17
252 253 1.272480 CCCTCCCCACGGAAAAGAATT 60.272 52.381 0.00 0.00 37.86 2.17
253 254 0.331616 CCCTCCCCACGGAAAAGAAT 59.668 55.000 0.00 0.00 37.86 2.40
254 255 1.765074 CCCTCCCCACGGAAAAGAA 59.235 57.895 0.00 0.00 37.86 2.52
255 256 2.228480 CCCCTCCCCACGGAAAAGA 61.228 63.158 0.00 0.00 37.86 2.52
256 257 2.198304 CTCCCCTCCCCACGGAAAAG 62.198 65.000 0.00 0.00 37.86 2.27
257 258 2.121872 TCCCCTCCCCACGGAAAA 60.122 61.111 0.00 0.00 37.86 2.29
258 259 2.609610 CTCCCCTCCCCACGGAAA 60.610 66.667 0.00 0.00 37.86 3.13
259 260 4.733725 CCTCCCCTCCCCACGGAA 62.734 72.222 0.00 0.00 37.86 4.30
265 266 4.601297 GATCCCCCTCCCCTCCCC 62.601 77.778 0.00 0.00 0.00 4.81
266 267 3.462501 AGATCCCCCTCCCCTCCC 61.463 72.222 0.00 0.00 0.00 4.30
267 268 1.979389 AAGAGATCCCCCTCCCCTCC 61.979 65.000 0.00 0.00 33.76 4.30
268 269 0.472925 GAAGAGATCCCCCTCCCCTC 60.473 65.000 0.00 0.00 33.76 4.30
269 270 1.635051 GAAGAGATCCCCCTCCCCT 59.365 63.158 0.00 0.00 33.76 4.79
270 271 1.462432 GGAAGAGATCCCCCTCCCC 60.462 68.421 0.00 0.00 43.00 4.81
271 272 4.322681 GGAAGAGATCCCCCTCCC 57.677 66.667 0.00 0.00 43.00 4.30
283 284 2.963101 TGGAACGAGAAACTCAGGAAGA 59.037 45.455 0.00 0.00 0.00 2.87
284 285 3.060602 GTGGAACGAGAAACTCAGGAAG 58.939 50.000 0.00 0.00 0.00 3.46
285 286 3.107642 GTGGAACGAGAAACTCAGGAA 57.892 47.619 0.00 0.00 0.00 3.36
286 287 2.814280 GTGGAACGAGAAACTCAGGA 57.186 50.000 0.00 0.00 0.00 3.86
409 412 6.712241 AACATCATAGAACAAACGAGACAG 57.288 37.500 0.00 0.00 0.00 3.51
433 439 9.742144 TTACTTCTATGGTTAAGTAAAATGGCA 57.258 29.630 5.45 0.00 42.34 4.92
518 585 7.050377 ACATGAGAATGTTACAATACCAGAGG 58.950 38.462 0.00 0.00 0.00 3.69
537 604 7.254522 GCCATTAAATGCCACAATTTACATGAG 60.255 37.037 0.00 0.00 32.95 2.90
547 614 6.593382 GTGATTAAAGCCATTAAATGCCACAA 59.407 34.615 0.00 0.00 37.06 3.33
650 768 9.104965 CTCTACTAGCATATATTAGAGCGTCTT 57.895 37.037 5.77 0.00 31.83 3.01
756 877 7.101700 CCACGAGAGGTAATAGGTTACTTTTT 58.898 38.462 0.00 0.00 40.06 1.94
757 878 6.637657 CCACGAGAGGTAATAGGTTACTTTT 58.362 40.000 0.00 0.00 40.06 2.27
758 879 5.394993 GCCACGAGAGGTAATAGGTTACTTT 60.395 44.000 0.00 0.00 40.06 2.66
759 880 4.099113 GCCACGAGAGGTAATAGGTTACTT 59.901 45.833 0.00 0.00 40.06 2.24
760 881 3.635836 GCCACGAGAGGTAATAGGTTACT 59.364 47.826 0.00 0.00 40.06 2.24
761 882 3.549625 CGCCACGAGAGGTAATAGGTTAC 60.550 52.174 0.00 0.00 39.57 2.50
762 883 2.620115 CGCCACGAGAGGTAATAGGTTA 59.380 50.000 0.00 0.00 0.00 2.85
763 884 1.407979 CGCCACGAGAGGTAATAGGTT 59.592 52.381 0.00 0.00 0.00 3.50
764 885 1.030457 CGCCACGAGAGGTAATAGGT 58.970 55.000 0.00 0.00 0.00 3.08
765 886 1.030457 ACGCCACGAGAGGTAATAGG 58.970 55.000 0.00 0.00 0.00 2.57
766 887 2.098607 TGAACGCCACGAGAGGTAATAG 59.901 50.000 0.00 0.00 0.00 1.73
767 888 2.093890 TGAACGCCACGAGAGGTAATA 58.906 47.619 0.00 0.00 0.00 0.98
768 889 0.892755 TGAACGCCACGAGAGGTAAT 59.107 50.000 0.00 0.00 0.00 1.89
769 890 0.892755 ATGAACGCCACGAGAGGTAA 59.107 50.000 0.00 0.00 0.00 2.85
770 891 0.892755 AATGAACGCCACGAGAGGTA 59.107 50.000 0.00 0.00 0.00 3.08
771 892 0.389948 GAATGAACGCCACGAGAGGT 60.390 55.000 0.00 0.00 0.00 3.85
772 893 0.108615 AGAATGAACGCCACGAGAGG 60.109 55.000 0.00 0.00 0.00 3.69
773 894 1.391485 CAAGAATGAACGCCACGAGAG 59.609 52.381 0.00 0.00 0.00 3.20
774 895 1.000394 TCAAGAATGAACGCCACGAGA 60.000 47.619 0.00 0.00 30.99 4.04
775 896 1.126846 GTCAAGAATGAACGCCACGAG 59.873 52.381 0.00 0.00 37.30 4.18
811 932 5.278758 CCACAACTATTTTGGACCGTTCATT 60.279 40.000 0.00 0.00 31.39 2.57
835 956 2.098770 GCTTGACAGATCTTGGAATGGC 59.901 50.000 0.00 0.00 0.00 4.40
841 962 3.057033 CCCAAAAGCTTGACAGATCTTGG 60.057 47.826 13.15 13.15 34.14 3.61
926 1047 1.051008 TGTGAGCTTGAGCCTTGAGA 58.949 50.000 0.00 0.00 43.38 3.27
927 1048 1.155042 GTGTGAGCTTGAGCCTTGAG 58.845 55.000 0.00 0.00 43.38 3.02
928 1049 0.250467 GGTGTGAGCTTGAGCCTTGA 60.250 55.000 0.00 0.00 43.38 3.02
929 1050 0.535780 TGGTGTGAGCTTGAGCCTTG 60.536 55.000 0.00 0.00 43.38 3.61
930 1051 0.183492 TTGGTGTGAGCTTGAGCCTT 59.817 50.000 0.00 0.00 43.38 4.35
931 1052 0.536006 GTTGGTGTGAGCTTGAGCCT 60.536 55.000 0.00 0.00 43.38 4.58
932 1053 1.518903 GGTTGGTGTGAGCTTGAGCC 61.519 60.000 0.00 0.00 43.38 4.70
933 1054 0.819259 TGGTTGGTGTGAGCTTGAGC 60.819 55.000 0.00 0.00 42.49 4.26
1041 1190 0.331954 AGGACGCTAAGAGGAGGACA 59.668 55.000 0.00 0.00 0.00 4.02
1042 1191 1.026584 GAGGACGCTAAGAGGAGGAC 58.973 60.000 0.00 0.00 0.00 3.85
1056 1205 2.505118 GCACGCAGAGACGAGGAC 60.505 66.667 0.00 0.00 36.70 3.85
1079 1228 0.460987 GAACTGACCTGATCCAGCCG 60.461 60.000 0.00 0.00 33.90 5.52
1114 1263 5.170748 TCAGCATAATGGCGATACATACAG 58.829 41.667 0.00 0.00 39.27 2.74
1148 1300 2.292828 AACATCAACACAGGGAAGGG 57.707 50.000 0.00 0.00 0.00 3.95
1437 5822 5.980698 CATGAAGTTCAGGTACATGCTAG 57.019 43.478 11.91 0.00 33.42 3.42
1531 5939 2.906182 GATCATGCACCGGACGCTCA 62.906 60.000 9.46 0.00 0.00 4.26
1594 6021 1.663074 GCGACATTTTTGCCGGCAA 60.663 52.632 37.30 37.30 0.00 4.52
1601 6028 2.124011 ACAGCACAGCGACATTTTTG 57.876 45.000 0.00 0.00 0.00 2.44
1695 6135 1.792949 CACACCACTCTTGCTCGTTAC 59.207 52.381 0.00 0.00 0.00 2.50
1698 6138 0.178068 AACACACCACTCTTGCTCGT 59.822 50.000 0.00 0.00 0.00 4.18
1735 6190 0.182299 CCTTTCATGCTCCCTCCCTC 59.818 60.000 0.00 0.00 0.00 4.30
1765 6220 3.353114 CTTGCACCGACGCACATCG 62.353 63.158 0.00 0.00 42.87 3.84
1770 6225 2.661537 CTGTCTTGCACCGACGCA 60.662 61.111 9.91 0.00 41.03 5.24
1814 6269 1.811359 AGACGAGGAGTAACTGAACGG 59.189 52.381 0.00 0.00 0.00 4.44
1831 6292 0.388134 TCGTACCGCTGCTTTCAGAC 60.388 55.000 0.00 0.00 42.95 3.51
1832 6293 0.315886 TTCGTACCGCTGCTTTCAGA 59.684 50.000 0.00 0.00 42.95 3.27
1841 6302 1.271379 TCACATTCAGTTCGTACCGCT 59.729 47.619 0.00 0.00 0.00 5.52
1843 6304 1.647213 CGTCACATTCAGTTCGTACCG 59.353 52.381 0.00 0.00 0.00 4.02
1907 6369 2.833794 TGTAGCACAGTTTCAGTCCAC 58.166 47.619 0.00 0.00 0.00 4.02
2014 6480 2.184322 CGACACTGGATCCCACGG 59.816 66.667 9.90 0.00 0.00 4.94
2061 6527 2.889678 AGTAAAAGTCGTCTCCGGAAGT 59.110 45.455 5.23 0.00 33.95 3.01
2062 6528 3.500014 GAGTAAAAGTCGTCTCCGGAAG 58.500 50.000 5.23 0.00 33.95 3.46
2156 6627 3.522750 AGCTCAGATTTCATCCTTCCAGT 59.477 43.478 0.00 0.00 0.00 4.00
2183 6654 3.383505 GTGCCAAAACCTTAAACAGACCT 59.616 43.478 0.00 0.00 0.00 3.85
2202 6673 4.679412 CAACAGGCCATTTGGTGC 57.321 55.556 5.01 0.00 37.57 5.01
2203 6674 1.373246 CGCAACAGGCCATTTGGTG 60.373 57.895 15.94 10.75 40.31 4.17
2208 6679 2.990967 CACCCGCAACAGGCCATT 60.991 61.111 5.01 0.00 40.31 3.16
2212 6683 1.299850 GTTTTCACCCGCAACAGGC 60.300 57.895 0.00 0.00 39.90 4.85
2217 6688 2.417515 GGTCAAAAGTTTTCACCCGCAA 60.418 45.455 10.13 0.00 0.00 4.85
2219 6690 1.407618 AGGTCAAAAGTTTTCACCCGC 59.592 47.619 16.89 0.00 0.00 6.13
2221 6692 2.543031 GCGAGGTCAAAAGTTTTCACCC 60.543 50.000 16.89 8.42 0.00 4.61
2222 6693 2.727777 GCGAGGTCAAAAGTTTTCACC 58.272 47.619 13.14 13.14 0.00 4.02
2241 6715 0.863119 GCATCAACGGCAAATCTCGC 60.863 55.000 0.00 0.00 0.00 5.03
2243 6717 1.470098 AGTGCATCAACGGCAAATCTC 59.530 47.619 0.00 0.00 43.91 2.75
2245 6719 2.785679 GTAGTGCATCAACGGCAAATC 58.214 47.619 0.00 0.00 43.91 2.17
2270 6745 0.996462 CACGCCCTATACACGTTGTG 59.004 55.000 0.00 0.00 38.09 3.33
2271 6746 0.604578 ACACGCCCTATACACGTTGT 59.395 50.000 0.00 0.00 38.09 3.32
2272 6747 1.717194 AACACGCCCTATACACGTTG 58.283 50.000 0.00 0.00 38.09 4.10
2273 6748 2.460757 AAACACGCCCTATACACGTT 57.539 45.000 0.00 0.00 38.09 3.99
2274 6749 2.070783 CAAAACACGCCCTATACACGT 58.929 47.619 0.00 0.00 41.45 4.49
2275 6750 2.070783 ACAAAACACGCCCTATACACG 58.929 47.619 0.00 0.00 0.00 4.49
2276 6751 3.817238 CAACAAAACACGCCCTATACAC 58.183 45.455 0.00 0.00 0.00 2.90
2277 6752 2.226912 GCAACAAAACACGCCCTATACA 59.773 45.455 0.00 0.00 0.00 2.29
2278 6753 2.486592 AGCAACAAAACACGCCCTATAC 59.513 45.455 0.00 0.00 0.00 1.47
2279 6754 2.745281 GAGCAACAAAACACGCCCTATA 59.255 45.455 0.00 0.00 0.00 1.31
2280 6755 1.539827 GAGCAACAAAACACGCCCTAT 59.460 47.619 0.00 0.00 0.00 2.57
2293 6772 3.653539 TTAGAGTTAGTGCGAGCAACA 57.346 42.857 0.00 0.00 0.00 3.33
2305 6784 2.232941 CCACTGAGCCCGTTTAGAGTTA 59.767 50.000 0.00 0.00 0.00 2.24
2310 6789 2.167693 TGTATCCACTGAGCCCGTTTAG 59.832 50.000 0.00 0.00 0.00 1.85
2311 6790 2.181125 TGTATCCACTGAGCCCGTTTA 58.819 47.619 0.00 0.00 0.00 2.01
2316 6795 3.686016 TCTTTTTGTATCCACTGAGCCC 58.314 45.455 0.00 0.00 0.00 5.19
2317 6796 3.127721 GCTCTTTTTGTATCCACTGAGCC 59.872 47.826 0.00 0.00 39.53 4.70
2320 6799 8.461222 CAAATATGCTCTTTTTGTATCCACTGA 58.539 33.333 0.00 0.00 0.00 3.41
2321 6800 8.461222 TCAAATATGCTCTTTTTGTATCCACTG 58.539 33.333 0.00 0.00 33.24 3.66
2336 6815 6.916387 CCTCACATGAACAATCAAATATGCTC 59.084 38.462 0.00 0.00 39.49 4.26
2339 6818 7.541162 ACACCTCACATGAACAATCAAATATG 58.459 34.615 0.00 0.00 39.49 1.78
2340 6819 7.707624 ACACCTCACATGAACAATCAAATAT 57.292 32.000 0.00 0.00 39.49 1.28
2341 6820 7.369607 CAACACCTCACATGAACAATCAAATA 58.630 34.615 0.00 0.00 39.49 1.40
2342 6821 6.218019 CAACACCTCACATGAACAATCAAAT 58.782 36.000 0.00 0.00 39.49 2.32
2347 6826 3.565307 ACCAACACCTCACATGAACAAT 58.435 40.909 0.00 0.00 0.00 2.71
2351 6830 1.542328 CGGACCAACACCTCACATGAA 60.542 52.381 0.00 0.00 0.00 2.57
2355 6834 1.001520 CATACGGACCAACACCTCACA 59.998 52.381 0.00 0.00 0.00 3.58
2364 6843 0.391793 TTCATGCGCATACGGACCAA 60.392 50.000 24.84 4.51 44.64 3.67
2365 6844 0.391793 TTTCATGCGCATACGGACCA 60.392 50.000 24.84 2.97 44.64 4.02
2366 6845 0.027586 GTTTCATGCGCATACGGACC 59.972 55.000 24.84 5.99 44.64 4.46
2367 6846 1.004927 GAGTTTCATGCGCATACGGAC 60.005 52.381 24.84 18.11 44.64 4.79
2368 6847 1.286501 GAGTTTCATGCGCATACGGA 58.713 50.000 24.84 13.95 46.40 4.69
2369 6848 1.006086 TGAGTTTCATGCGCATACGG 58.994 50.000 24.84 11.50 40.57 4.02
2370 6849 2.804421 TTGAGTTTCATGCGCATACG 57.196 45.000 24.84 12.32 44.07 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.