Multiple sequence alignment - TraesCS5A01G398300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G398300 chr5A 100.000 4690 0 0 1 4690 592288746 592293435 0.000000e+00 8661.0
1 TraesCS5A01G398300 chr5A 91.756 558 21 6 1 535 433387269 433387824 0.000000e+00 752.0
2 TraesCS5A01G398300 chr5A 90.494 547 37 7 1 535 559503581 559503038 0.000000e+00 708.0
3 TraesCS5A01G398300 chr5A 96.364 110 4 0 3192 3301 569806479 569806588 1.040000e-41 182.0
4 TraesCS5A01G398300 chr5A 100.000 37 0 0 4442 4478 592293153 592293189 8.420000e-08 69.4
5 TraesCS5A01G398300 chr5A 100.000 37 0 0 4408 4444 592293187 592293223 8.420000e-08 69.4
6 TraesCS5A01G398300 chr5D 93.733 1101 56 6 3343 4442 472736805 472737893 0.000000e+00 1639.0
7 TraesCS5A01G398300 chr5D 89.421 1210 70 14 2018 3194 472735573 472736757 0.000000e+00 1472.0
8 TraesCS5A01G398300 chr5D 87.605 1194 70 36 808 1989 472734444 472735571 0.000000e+00 1314.0
9 TraesCS5A01G398300 chr5D 91.935 558 19 11 1 535 318819107 318818553 0.000000e+00 758.0
10 TraesCS5A01G398300 chr5D 95.789 190 8 0 4500 4689 288133467 288133278 1.640000e-79 307.0
11 TraesCS5A01G398300 chr5D 92.571 175 6 3 639 810 472734248 472734418 1.300000e-60 244.0
12 TraesCS5A01G398300 chr5D 94.737 114 6 0 3194 3307 293784492 293784605 1.340000e-40 178.0
13 TraesCS5A01G398300 chr5D 91.339 127 10 1 3175 3301 193234609 193234734 6.240000e-39 172.0
14 TraesCS5A01G398300 chr5B 92.850 1007 56 9 1879 2877 580101546 580102544 0.000000e+00 1447.0
15 TraesCS5A01G398300 chr5B 91.577 926 53 12 907 1821 580100511 580101422 0.000000e+00 1254.0
16 TraesCS5A01G398300 chr5B 87.080 565 54 10 3381 3935 580103015 580103570 5.150000e-174 621.0
17 TraesCS5A01G398300 chr5B 93.534 232 15 0 2963 3194 580102622 580102853 3.470000e-91 346.0
18 TraesCS5A01G398300 chr5B 94.211 190 11 0 4500 4689 75744465 75744276 1.650000e-74 291.0
19 TraesCS5A01G398300 chr5B 83.673 147 4 6 773 903 580100332 580100474 2.290000e-23 121.0
20 TraesCS5A01G398300 chr5B 98.387 62 1 0 4226 4287 580103870 580103931 4.960000e-20 110.0
21 TraesCS5A01G398300 chr7A 92.613 555 18 7 1 533 43173487 43172934 0.000000e+00 776.0
22 TraesCS5A01G398300 chr7A 91.727 556 24 5 1 535 726511625 726511071 0.000000e+00 752.0
23 TraesCS5A01G398300 chr7A 91.562 557 24 13 1 535 45721894 45722449 0.000000e+00 747.0
24 TraesCS5A01G398300 chr1A 92.129 559 20 14 1 536 4803158 4802601 0.000000e+00 767.0
25 TraesCS5A01G398300 chr1A 92.143 560 19 10 1 538 486572314 486571758 0.000000e+00 767.0
26 TraesCS5A01G398300 chr1A 92.101 557 21 4 1 535 531511115 531510560 0.000000e+00 763.0
27 TraesCS5A01G398300 chr1A 91.516 554 26 9 1 537 265642691 265642142 0.000000e+00 743.0
28 TraesCS5A01G398300 chr6A 92.224 553 20 10 1 531 136934931 136935482 0.000000e+00 761.0
29 TraesCS5A01G398300 chr6A 93.717 191 9 1 4499 4689 593696923 593697110 2.760000e-72 283.0
30 TraesCS5A01G398300 chr6A 92.063 126 9 1 3181 3305 477910758 477910883 4.820000e-40 176.0
31 TraesCS5A01G398300 chr4A 90.844 557 27 12 1 535 4148577 4148023 0.000000e+00 725.0
32 TraesCS5A01G398300 chr4A 90.340 559 27 9 1 535 455027365 455027920 0.000000e+00 708.0
33 TraesCS5A01G398300 chr4A 94.301 193 9 2 4500 4690 741985199 741985007 1.280000e-75 294.0
34 TraesCS5A01G398300 chr4A 95.575 113 4 1 3193 3304 713379731 713379619 3.730000e-41 180.0
35 TraesCS5A01G398300 chrUn 90.126 557 27 14 1 533 41923132 41923684 0.000000e+00 699.0
36 TraesCS5A01G398300 chrUn 94.828 116 6 0 3186 3301 81697240 81697125 1.040000e-41 182.0
37 TraesCS5A01G398300 chr6D 89.418 567 24 19 1 533 107938175 107938739 0.000000e+00 682.0
38 TraesCS5A01G398300 chr6D 81.000 300 20 18 264 536 424822988 424823277 2.210000e-48 204.0
39 TraesCS5A01G398300 chr6B 89.655 551 35 9 1 535 613311629 613311085 0.000000e+00 682.0
40 TraesCS5A01G398300 chr1B 88.489 556 38 9 1 533 468479107 468478555 0.000000e+00 649.0
41 TraesCS5A01G398300 chr1D 87.679 560 39 12 1 533 479555963 479556519 3.980000e-175 625.0
42 TraesCS5A01G398300 chr2B 84.375 480 40 16 91 538 551537313 551537789 5.570000e-119 438.0
43 TraesCS5A01G398300 chr3B 93.137 204 9 3 4491 4690 240267681 240267883 1.280000e-75 294.0
44 TraesCS5A01G398300 chr3B 93.194 191 12 1 4499 4689 385088869 385089058 3.570000e-71 279.0
45 TraesCS5A01G398300 chr4B 93.299 194 9 2 4500 4690 437405019 437405211 2.760000e-72 283.0
46 TraesCS5A01G398300 chr7B 93.717 191 7 3 4499 4689 589915954 589915769 9.940000e-72 281.0
47 TraesCS5A01G398300 chr2A 93.194 191 11 1 4499 4689 68865393 68865581 3.570000e-71 279.0
48 TraesCS5A01G398300 chr3D 88.670 203 11 5 342 533 8816471 8816270 2.180000e-58 237.0
49 TraesCS5A01G398300 chr3A 95.536 112 5 0 3193 3304 585500962 585501073 3.730000e-41 180.0
50 TraesCS5A01G398300 chr3A 95.536 112 5 0 3190 3301 707385857 707385968 3.730000e-41 180.0
51 TraesCS5A01G398300 chr2D 90.625 128 11 1 3191 3318 14895102 14895228 8.070000e-38 169.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G398300 chr5A 592288746 592293435 4689 False 2933.266667 8661 100.0000 1 4690 3 chr5A.!!$F3 4689
1 TraesCS5A01G398300 chr5A 433387269 433387824 555 False 752.000000 752 91.7560 1 535 1 chr5A.!!$F1 534
2 TraesCS5A01G398300 chr5A 559503038 559503581 543 True 708.000000 708 90.4940 1 535 1 chr5A.!!$R1 534
3 TraesCS5A01G398300 chr5D 472734248 472737893 3645 False 1167.250000 1639 90.8325 639 4442 4 chr5D.!!$F3 3803
4 TraesCS5A01G398300 chr5D 318818553 318819107 554 True 758.000000 758 91.9350 1 535 1 chr5D.!!$R2 534
5 TraesCS5A01G398300 chr5B 580100332 580103931 3599 False 649.833333 1447 91.1835 773 4287 6 chr5B.!!$F1 3514
6 TraesCS5A01G398300 chr7A 43172934 43173487 553 True 776.000000 776 92.6130 1 533 1 chr7A.!!$R1 532
7 TraesCS5A01G398300 chr7A 726511071 726511625 554 True 752.000000 752 91.7270 1 535 1 chr7A.!!$R2 534
8 TraesCS5A01G398300 chr7A 45721894 45722449 555 False 747.000000 747 91.5620 1 535 1 chr7A.!!$F1 534
9 TraesCS5A01G398300 chr1A 4802601 4803158 557 True 767.000000 767 92.1290 1 536 1 chr1A.!!$R1 535
10 TraesCS5A01G398300 chr1A 486571758 486572314 556 True 767.000000 767 92.1430 1 538 1 chr1A.!!$R3 537
11 TraesCS5A01G398300 chr1A 531510560 531511115 555 True 763.000000 763 92.1010 1 535 1 chr1A.!!$R4 534
12 TraesCS5A01G398300 chr1A 265642142 265642691 549 True 743.000000 743 91.5160 1 537 1 chr1A.!!$R2 536
13 TraesCS5A01G398300 chr6A 136934931 136935482 551 False 761.000000 761 92.2240 1 531 1 chr6A.!!$F1 530
14 TraesCS5A01G398300 chr4A 4148023 4148577 554 True 725.000000 725 90.8440 1 535 1 chr4A.!!$R1 534
15 TraesCS5A01G398300 chr4A 455027365 455027920 555 False 708.000000 708 90.3400 1 535 1 chr4A.!!$F1 534
16 TraesCS5A01G398300 chrUn 41923132 41923684 552 False 699.000000 699 90.1260 1 533 1 chrUn.!!$F1 532
17 TraesCS5A01G398300 chr6D 107938175 107938739 564 False 682.000000 682 89.4180 1 533 1 chr6D.!!$F1 532
18 TraesCS5A01G398300 chr6B 613311085 613311629 544 True 682.000000 682 89.6550 1 535 1 chr6B.!!$R1 534
19 TraesCS5A01G398300 chr1B 468478555 468479107 552 True 649.000000 649 88.4890 1 533 1 chr1B.!!$R1 532
20 TraesCS5A01G398300 chr1D 479555963 479556519 556 False 625.000000 625 87.6790 1 533 1 chr1D.!!$F1 532

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
949 1063 0.033503 CCACCCACCTACCCAAATCC 60.034 60.0 0.00 0.0 0.00 3.01 F
977 1092 0.034863 CTAAAACCCTAGGCCGCCAA 60.035 55.0 13.15 0.0 0.00 4.52 F
1568 1686 1.185315 GCCAAGGTACCATTGCACAT 58.815 50.0 15.94 0.0 0.00 3.21 F
2250 2449 0.261696 AAGGAAAGCCACCAACCTGT 59.738 50.0 0.00 0.0 36.29 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2058 2254 1.963515 ACAACCATCCTTTTCACCTGC 59.036 47.619 0.0 0.0 0.0 4.85 R
2171 2370 2.483877 CTGATTTAGCACCACGAGCAAA 59.516 45.455 0.0 0.0 0.0 3.68 R
3335 3571 0.465460 GTGAAAGGGTGGAGTGTGCA 60.465 55.000 0.0 0.0 0.0 4.57 R
3806 4134 0.037232 GCCCGTCTTACACTTCTGCT 60.037 55.000 0.0 0.0 0.0 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
244 246 1.538047 ATGTGGACTCATGTTGGCAC 58.462 50.000 0.00 0.00 0.00 5.01
512 552 0.891904 AAATCACCGTCCGTTTGGGG 60.892 55.000 0.00 0.00 36.01 4.96
537 577 2.814336 CCAGTTGGAGTTGCTCTTAACC 59.186 50.000 0.00 0.00 37.39 2.85
538 578 2.480419 CAGTTGGAGTTGCTCTTAACCG 59.520 50.000 10.63 0.00 32.45 4.44
539 579 1.197036 GTTGGAGTTGCTCTTAACCGC 59.803 52.381 0.00 0.00 0.00 5.68
540 580 0.685097 TGGAGTTGCTCTTAACCGCT 59.315 50.000 0.00 0.00 0.00 5.52
541 581 1.071699 TGGAGTTGCTCTTAACCGCTT 59.928 47.619 0.00 0.00 0.00 4.68
542 582 1.732809 GGAGTTGCTCTTAACCGCTTC 59.267 52.381 0.00 0.00 0.00 3.86
543 583 2.413837 GAGTTGCTCTTAACCGCTTCA 58.586 47.619 0.00 0.00 0.00 3.02
544 584 2.806244 GAGTTGCTCTTAACCGCTTCAA 59.194 45.455 0.00 0.00 0.00 2.69
545 585 2.808543 AGTTGCTCTTAACCGCTTCAAG 59.191 45.455 0.00 0.00 0.00 3.02
546 586 2.543777 TGCTCTTAACCGCTTCAAGT 57.456 45.000 0.00 0.00 0.00 3.16
547 587 2.846193 TGCTCTTAACCGCTTCAAGTT 58.154 42.857 0.00 0.00 0.00 2.66
548 588 3.211045 TGCTCTTAACCGCTTCAAGTTT 58.789 40.909 0.00 0.00 0.00 2.66
549 589 4.382291 TGCTCTTAACCGCTTCAAGTTTA 58.618 39.130 0.00 0.00 0.00 2.01
550 590 4.451096 TGCTCTTAACCGCTTCAAGTTTAG 59.549 41.667 0.00 0.00 0.00 1.85
551 591 4.669453 GCTCTTAACCGCTTCAAGTTTAGC 60.669 45.833 0.00 0.00 0.00 3.09
556 596 3.949313 GCTTCAAGTTTAGCGACGG 57.051 52.632 0.00 0.00 0.00 4.79
557 597 1.145803 GCTTCAAGTTTAGCGACGGT 58.854 50.000 4.41 4.41 0.00 4.83
558 598 1.126296 GCTTCAAGTTTAGCGACGGTC 59.874 52.381 1.23 0.00 0.00 4.79
559 599 2.400399 CTTCAAGTTTAGCGACGGTCA 58.600 47.619 1.23 0.00 0.00 4.02
560 600 2.736144 TCAAGTTTAGCGACGGTCAT 57.264 45.000 1.23 0.00 0.00 3.06
561 601 3.034721 TCAAGTTTAGCGACGGTCATT 57.965 42.857 1.23 0.00 0.00 2.57
562 602 2.734606 TCAAGTTTAGCGACGGTCATTG 59.265 45.455 1.23 5.08 0.00 2.82
563 603 1.722011 AGTTTAGCGACGGTCATTGG 58.278 50.000 1.23 0.00 0.00 3.16
564 604 1.001633 AGTTTAGCGACGGTCATTGGT 59.998 47.619 1.23 0.39 0.00 3.67
565 605 1.802365 GTTTAGCGACGGTCATTGGTT 59.198 47.619 1.23 0.00 0.00 3.67
566 606 2.172851 TTAGCGACGGTCATTGGTTT 57.827 45.000 1.23 0.00 0.00 3.27
567 607 1.717194 TAGCGACGGTCATTGGTTTC 58.283 50.000 1.23 0.00 0.00 2.78
568 608 0.953960 AGCGACGGTCATTGGTTTCC 60.954 55.000 9.10 0.00 0.00 3.13
569 609 1.785321 CGACGGTCATTGGTTTCCG 59.215 57.895 9.10 0.00 46.98 4.30
572 612 1.785321 CGGTCATTGGTTTCCGTCG 59.215 57.895 0.00 0.00 38.45 5.12
573 613 0.947180 CGGTCATTGGTTTCCGTCGT 60.947 55.000 0.00 0.00 38.45 4.34
574 614 0.794473 GGTCATTGGTTTCCGTCGTC 59.206 55.000 0.00 0.00 0.00 4.20
575 615 1.607251 GGTCATTGGTTTCCGTCGTCT 60.607 52.381 0.00 0.00 0.00 4.18
576 616 2.140717 GTCATTGGTTTCCGTCGTCTT 58.859 47.619 0.00 0.00 0.00 3.01
577 617 2.546789 GTCATTGGTTTCCGTCGTCTTT 59.453 45.455 0.00 0.00 0.00 2.52
578 618 3.742369 GTCATTGGTTTCCGTCGTCTTTA 59.258 43.478 0.00 0.00 0.00 1.85
579 619 4.211794 GTCATTGGTTTCCGTCGTCTTTAA 59.788 41.667 0.00 0.00 0.00 1.52
580 620 4.998672 TCATTGGTTTCCGTCGTCTTTAAT 59.001 37.500 0.00 0.00 0.00 1.40
581 621 5.470777 TCATTGGTTTCCGTCGTCTTTAATT 59.529 36.000 0.00 0.00 0.00 1.40
582 622 4.996062 TGGTTTCCGTCGTCTTTAATTC 57.004 40.909 0.00 0.00 0.00 2.17
583 623 3.429543 TGGTTTCCGTCGTCTTTAATTCG 59.570 43.478 0.00 0.00 0.00 3.34
584 624 3.401886 GTTTCCGTCGTCTTTAATTCGC 58.598 45.455 0.00 0.00 0.00 4.70
585 625 1.261989 TCCGTCGTCTTTAATTCGCG 58.738 50.000 0.00 0.00 0.00 5.87
586 626 0.986992 CCGTCGTCTTTAATTCGCGT 59.013 50.000 5.77 0.00 0.00 6.01
587 627 1.007729 CCGTCGTCTTTAATTCGCGTC 60.008 52.381 5.77 0.00 0.00 5.19
588 628 1.909532 CGTCGTCTTTAATTCGCGTCT 59.090 47.619 5.77 0.00 0.00 4.18
589 629 3.093574 CGTCGTCTTTAATTCGCGTCTA 58.906 45.455 5.77 0.00 0.00 2.59
590 630 3.722780 CGTCGTCTTTAATTCGCGTCTAT 59.277 43.478 5.77 0.00 0.00 1.98
591 631 4.900182 CGTCGTCTTTAATTCGCGTCTATA 59.100 41.667 5.77 0.00 0.00 1.31
592 632 5.164433 CGTCGTCTTTAATTCGCGTCTATAC 60.164 44.000 5.77 0.00 0.00 1.47
593 633 5.678483 GTCGTCTTTAATTCGCGTCTATACA 59.322 40.000 5.77 0.00 0.00 2.29
594 634 6.195244 GTCGTCTTTAATTCGCGTCTATACAA 59.805 38.462 5.77 0.00 0.00 2.41
595 635 6.195244 TCGTCTTTAATTCGCGTCTATACAAC 59.805 38.462 5.77 0.00 0.00 3.32
596 636 6.021232 CGTCTTTAATTCGCGTCTATACAACA 60.021 38.462 5.77 0.00 0.00 3.33
597 637 7.109257 GTCTTTAATTCGCGTCTATACAACAC 58.891 38.462 5.77 0.00 0.00 3.32
598 638 6.807720 TCTTTAATTCGCGTCTATACAACACA 59.192 34.615 5.77 0.00 0.00 3.72
599 639 4.835199 AATTCGCGTCTATACAACACAC 57.165 40.909 5.77 0.00 0.00 3.82
600 640 2.267188 TCGCGTCTATACAACACACC 57.733 50.000 5.77 0.00 0.00 4.16
601 641 1.135315 TCGCGTCTATACAACACACCC 60.135 52.381 5.77 0.00 0.00 4.61
602 642 1.648504 GCGTCTATACAACACACCCC 58.351 55.000 0.00 0.00 0.00 4.95
603 643 1.206371 GCGTCTATACAACACACCCCT 59.794 52.381 0.00 0.00 0.00 4.79
604 644 2.354403 GCGTCTATACAACACACCCCTT 60.354 50.000 0.00 0.00 0.00 3.95
605 645 3.259064 CGTCTATACAACACACCCCTTG 58.741 50.000 0.00 0.00 0.00 3.61
606 646 3.056393 CGTCTATACAACACACCCCTTGA 60.056 47.826 0.00 0.00 0.00 3.02
607 647 4.504858 GTCTATACAACACACCCCTTGAG 58.495 47.826 0.00 0.00 0.00 3.02
608 648 2.200373 ATACAACACACCCCTTGAGC 57.800 50.000 0.00 0.00 0.00 4.26
609 649 0.109723 TACAACACACCCCTTGAGCC 59.890 55.000 0.00 0.00 0.00 4.70
610 650 1.152777 CAACACACCCCTTGAGCCA 60.153 57.895 0.00 0.00 0.00 4.75
611 651 1.152756 AACACACCCCTTGAGCCAC 60.153 57.895 0.00 0.00 0.00 5.01
612 652 1.932156 AACACACCCCTTGAGCCACA 61.932 55.000 0.00 0.00 0.00 4.17
613 653 1.075482 CACACCCCTTGAGCCACAT 59.925 57.895 0.00 0.00 0.00 3.21
614 654 0.327924 CACACCCCTTGAGCCACATA 59.672 55.000 0.00 0.00 0.00 2.29
615 655 0.328258 ACACCCCTTGAGCCACATAC 59.672 55.000 0.00 0.00 0.00 2.39
616 656 0.327924 CACCCCTTGAGCCACATACA 59.672 55.000 0.00 0.00 0.00 2.29
617 657 0.328258 ACCCCTTGAGCCACATACAC 59.672 55.000 0.00 0.00 0.00 2.90
618 658 0.327924 CCCCTTGAGCCACATACACA 59.672 55.000 0.00 0.00 0.00 3.72
619 659 1.064463 CCCCTTGAGCCACATACACAT 60.064 52.381 0.00 0.00 0.00 3.21
620 660 2.172505 CCCCTTGAGCCACATACACATA 59.827 50.000 0.00 0.00 0.00 2.29
621 661 3.181440 CCCCTTGAGCCACATACACATAT 60.181 47.826 0.00 0.00 0.00 1.78
622 662 3.817084 CCCTTGAGCCACATACACATATG 59.183 47.826 0.00 0.00 43.46 1.78
623 663 3.817084 CCTTGAGCCACATACACATATGG 59.183 47.826 7.80 0.00 42.32 2.74
630 670 5.213891 CCACATACACATATGGCTCTACA 57.786 43.478 7.80 0.00 42.32 2.74
631 671 5.798132 CCACATACACATATGGCTCTACAT 58.202 41.667 7.80 0.00 42.32 2.29
632 672 6.935167 CCACATACACATATGGCTCTACATA 58.065 40.000 7.80 0.00 42.32 2.29
633 673 7.559486 CCACATACACATATGGCTCTACATAT 58.441 38.462 7.80 0.00 43.05 1.78
634 674 8.695456 CCACATACACATATGGCTCTACATATA 58.305 37.037 7.80 0.00 40.97 0.86
649 689 8.750416 GCTCTACATATATAGCGTTTCATCATG 58.250 37.037 0.00 0.00 0.00 3.07
651 691 6.668541 ACATATATAGCGTTTCATCATGGC 57.331 37.500 0.00 0.00 0.00 4.40
663 703 3.499338 TCATCATGGCCAAAGAACAACT 58.501 40.909 10.96 0.00 0.00 3.16
721 764 5.874261 CCAAGTTGGAAGCTTCAAAAGAAAA 59.126 36.000 27.02 7.28 40.96 2.29
723 766 7.413328 CCAAGTTGGAAGCTTCAAAAGAAAAAG 60.413 37.037 27.02 9.01 40.96 2.27
727 770 8.503196 GTTGGAAGCTTCAAAAGAAAAAGAAAA 58.497 29.630 27.02 0.00 0.00 2.29
736 779 8.669946 TCAAAAGAAAAAGAAAAACACCAAGT 57.330 26.923 0.00 0.00 0.00 3.16
746 789 2.116827 AACACCAAGTTGGAACACGA 57.883 45.000 28.80 0.00 40.96 4.35
747 790 2.116827 ACACCAAGTTGGAACACGAA 57.883 45.000 28.80 0.00 40.96 3.85
748 791 2.650322 ACACCAAGTTGGAACACGAAT 58.350 42.857 28.80 0.00 40.96 3.34
749 792 2.616842 ACACCAAGTTGGAACACGAATC 59.383 45.455 28.80 0.00 40.96 2.52
770 813 6.721571 ATCATCAAAATTCAAAAGCAGCAG 57.278 33.333 0.00 0.00 0.00 4.24
835 907 1.228533 CAGCAAACACCAATTTGGCC 58.771 50.000 15.49 0.00 42.67 5.36
903 984 3.866582 CCAGCACGATCCCCTCCC 61.867 72.222 0.00 0.00 0.00 4.30
904 985 3.866582 CAGCACGATCCCCTCCCC 61.867 72.222 0.00 0.00 0.00 4.81
905 986 4.095400 AGCACGATCCCCTCCCCT 62.095 66.667 0.00 0.00 0.00 4.79
949 1063 0.033503 CCACCCACCTACCCAAATCC 60.034 60.000 0.00 0.00 0.00 3.01
977 1092 0.034863 CTAAAACCCTAGGCCGCCAA 60.035 55.000 13.15 0.00 0.00 4.52
1161 1279 2.671682 GTGGGGCAGGAGTTCCTC 59.328 66.667 0.00 0.00 46.65 3.71
1200 1318 3.391665 CTTCCCCTACCGCAGCCTG 62.392 68.421 0.00 0.00 0.00 4.85
1485 1603 1.532238 GCTCGGGAAAGGGGCTATT 59.468 57.895 0.00 0.00 0.00 1.73
1568 1686 1.185315 GCCAAGGTACCATTGCACAT 58.815 50.000 15.94 0.00 0.00 3.21
1573 1691 4.036734 CCAAGGTACCATTGCACATATGTC 59.963 45.833 15.94 2.00 0.00 3.06
1599 1720 3.040147 TCGTTCCCTGCTTTCTAACAG 57.960 47.619 0.00 0.00 0.00 3.16
1607 1728 4.262463 CCCTGCTTTCTAACAGTCACACTA 60.262 45.833 0.00 0.00 31.76 2.74
1660 1787 4.396478 GGGATAGCTGAGACCAAAGAAAAC 59.604 45.833 0.00 0.00 0.00 2.43
1669 1796 5.714806 TGAGACCAAAGAAAACCAAAGTCTT 59.285 36.000 0.00 0.00 33.68 3.01
1731 1860 9.896645 TTTGAATTAGAGATGCTTCTTCATAGT 57.103 29.630 3.29 0.00 30.64 2.12
1732 1861 9.896645 TTGAATTAGAGATGCTTCTTCATAGTT 57.103 29.630 3.29 1.84 30.64 2.24
1733 1862 9.539825 TGAATTAGAGATGCTTCTTCATAGTTC 57.460 33.333 3.29 9.83 30.30 3.01
1734 1863 9.539825 GAATTAGAGATGCTTCTTCATAGTTCA 57.460 33.333 3.29 0.00 30.30 3.18
1738 1867 7.669427 AGAGATGCTTCTTCATAGTTCATAGG 58.331 38.462 3.29 0.00 30.30 2.57
1739 1868 7.508636 AGAGATGCTTCTTCATAGTTCATAGGA 59.491 37.037 3.29 0.00 30.30 2.94
1740 1869 8.027524 AGATGCTTCTTCATAGTTCATAGGAA 57.972 34.615 0.00 0.00 33.37 3.36
1741 1870 8.658619 AGATGCTTCTTCATAGTTCATAGGAAT 58.341 33.333 0.00 0.00 33.93 3.01
1813 1942 9.486497 TTTTAAGCTATGAACATTGCAATTTGA 57.514 25.926 9.83 2.79 41.01 2.69
1822 1951 8.207521 TGAACATTGCAATTTGATAGATACGA 57.792 30.769 9.83 0.00 0.00 3.43
1823 1952 8.337532 TGAACATTGCAATTTGATAGATACGAG 58.662 33.333 9.83 0.00 0.00 4.18
1824 1953 7.792374 ACATTGCAATTTGATAGATACGAGT 57.208 32.000 9.83 0.00 0.00 4.18
1825 1954 8.887036 ACATTGCAATTTGATAGATACGAGTA 57.113 30.769 9.83 0.00 0.00 2.59
1828 1957 8.942338 TTGCAATTTGATAGATACGAGTACTT 57.058 30.769 0.00 0.00 0.00 2.24
1874 2059 4.216411 TGTTAAGCCTGTCAATAGGGAC 57.784 45.455 0.00 0.00 38.32 4.46
1912 2107 6.560253 ATTCTTATTTATGTGTGCCGATCC 57.440 37.500 0.00 0.00 0.00 3.36
1962 2158 7.956420 TTGTGAGTCGAGTATTTTGTAATGT 57.044 32.000 0.00 0.00 0.00 2.71
2002 2198 6.527722 GTGTCATGTAAATGTATGCTTGTTGG 59.472 38.462 0.00 0.00 0.00 3.77
2003 2199 6.208402 TGTCATGTAAATGTATGCTTGTTGGT 59.792 34.615 0.00 0.00 0.00 3.67
2010 2206 4.333913 TGTATGCTTGTTGGTTGCATTT 57.666 36.364 5.02 0.00 43.85 2.32
2011 2207 4.305769 TGTATGCTTGTTGGTTGCATTTC 58.694 39.130 5.02 1.32 43.85 2.17
2058 2254 4.560035 GCAATCTTTTCATCGTCAATGTGG 59.440 41.667 0.00 0.00 36.68 4.17
2155 2351 1.979155 CAGACTCGAGAGGTGGGCA 60.979 63.158 21.68 0.00 0.00 5.36
2171 2370 4.386424 GGTGGGCATTTCTCCCTTACTATT 60.386 45.833 0.00 0.00 44.23 1.73
2188 2387 4.069304 ACTATTTTGCTCGTGGTGCTAAA 58.931 39.130 0.00 0.00 38.83 1.85
2194 2393 2.232696 TGCTCGTGGTGCTAAATCAGTA 59.767 45.455 0.00 0.00 0.00 2.74
2250 2449 0.261696 AAGGAAAGCCACCAACCTGT 59.738 50.000 0.00 0.00 36.29 4.00
2292 2491 6.315393 AGGTTATAACTTCAATACCTTGTGCG 59.685 38.462 15.05 0.00 33.87 5.34
2320 2519 9.725019 ATGTTGAGTTGATTTCTTACTGTCATA 57.275 29.630 0.00 0.00 0.00 2.15
2477 2676 2.872732 AGCTTGATCAATGCCCCATAG 58.127 47.619 19.67 4.15 0.00 2.23
2691 2903 8.488651 AGGTTAGCATACTGTAATTGTGTTAC 57.511 34.615 0.00 0.00 0.00 2.50
2706 2918 7.959718 ATTGTGTTACGTATCAGTTAGTACG 57.040 36.000 6.58 3.67 46.59 3.67
2781 2993 8.891671 AAAAATATGTTTATTGGCCTAGCATG 57.108 30.769 3.32 0.00 0.00 4.06
2801 3013 5.730289 GCATGGCTTTGTTTTCCTTGTTTTC 60.730 40.000 0.00 0.00 0.00 2.29
2916 3152 5.975693 TCCATTTCTTGTCCCATGTAAAC 57.024 39.130 0.00 0.00 0.00 2.01
2946 3182 7.060383 ACACACCTTATTAGATGATCCTCTG 57.940 40.000 10.48 0.00 0.00 3.35
2963 3199 6.857437 TCCTCTGTTCTTCTTCATGATGTA 57.143 37.500 8.33 0.00 0.00 2.29
2966 3202 8.981659 TCCTCTGTTCTTCTTCATGATGTATTA 58.018 33.333 8.33 0.00 0.00 0.98
2968 3204 8.654230 TCTGTTCTTCTTCATGATGTATTAGC 57.346 34.615 8.33 0.00 0.00 3.09
3103 3339 0.331616 ACCACTGGAGGTAATTGGGC 59.668 55.000 0.71 0.00 40.98 5.36
3109 3345 3.332485 ACTGGAGGTAATTGGGCAGTTTA 59.668 43.478 0.00 0.00 0.00 2.01
3124 3360 6.493115 TGGGCAGTTTAATTTTCTGAAGATGA 59.507 34.615 7.92 0.00 0.00 2.92
3146 3382 2.033299 ACATATTTGGAGCGGCGATTTG 59.967 45.455 12.98 1.81 0.00 2.32
3161 3397 6.062021 CGGCGATTTGTTTGTTTTTATTCAC 58.938 36.000 0.00 0.00 0.00 3.18
3163 3399 6.291902 GGCGATTTGTTTGTTTTTATTCACGT 60.292 34.615 0.00 0.00 0.00 4.49
3173 3409 7.499321 TGTTTTTATTCACGTACATTCCACT 57.501 32.000 0.00 0.00 0.00 4.00
3194 3430 6.183360 CCACTCATGAGATTCCTTGTGATCTA 60.183 42.308 29.27 0.00 0.00 1.98
3195 3431 6.700960 CACTCATGAGATTCCTTGTGATCTAC 59.299 42.308 29.27 0.00 0.00 2.59
3196 3432 6.610830 ACTCATGAGATTCCTTGTGATCTACT 59.389 38.462 29.27 0.00 0.00 2.57
3197 3433 7.048629 TCATGAGATTCCTTGTGATCTACTC 57.951 40.000 0.00 0.00 0.00 2.59
3198 3434 5.860941 TGAGATTCCTTGTGATCTACTCC 57.139 43.478 0.00 0.00 0.00 3.85
3199 3435 4.651503 TGAGATTCCTTGTGATCTACTCCC 59.348 45.833 0.00 0.00 0.00 4.30
3200 3436 4.889780 AGATTCCTTGTGATCTACTCCCT 58.110 43.478 0.00 0.00 0.00 4.20
3201 3437 4.898861 AGATTCCTTGTGATCTACTCCCTC 59.101 45.833 0.00 0.00 0.00 4.30
3202 3438 3.033659 TCCTTGTGATCTACTCCCTCC 57.966 52.381 0.00 0.00 0.00 4.30
3203 3439 1.683917 CCTTGTGATCTACTCCCTCCG 59.316 57.143 0.00 0.00 0.00 4.63
3204 3440 2.379972 CTTGTGATCTACTCCCTCCGT 58.620 52.381 0.00 0.00 0.00 4.69
3205 3441 2.526888 TGTGATCTACTCCCTCCGTT 57.473 50.000 0.00 0.00 0.00 4.44
3206 3442 2.376109 TGTGATCTACTCCCTCCGTTC 58.624 52.381 0.00 0.00 0.00 3.95
3207 3443 1.682323 GTGATCTACTCCCTCCGTTCC 59.318 57.143 0.00 0.00 0.00 3.62
3208 3444 0.953003 GATCTACTCCCTCCGTTCCG 59.047 60.000 0.00 0.00 0.00 4.30
3209 3445 0.549950 ATCTACTCCCTCCGTTCCGA 59.450 55.000 0.00 0.00 0.00 4.55
3210 3446 0.329261 TCTACTCCCTCCGTTCCGAA 59.671 55.000 0.00 0.00 0.00 4.30
3211 3447 1.064166 TCTACTCCCTCCGTTCCGAAT 60.064 52.381 0.00 0.00 0.00 3.34
3212 3448 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
3213 3449 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3214 3450 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
3215 3451 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
3216 3452 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
3217 3453 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3218 3454 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3219 3455 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3220 3456 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
3221 3457 2.030007 TCCGTTCCGAATTACTTGTCGT 60.030 45.455 0.00 0.00 35.48 4.34
3222 3458 3.190327 TCCGTTCCGAATTACTTGTCGTA 59.810 43.478 0.00 0.00 35.48 3.43
3223 3459 3.545078 CCGTTCCGAATTACTTGTCGTAG 59.455 47.826 0.00 0.00 35.48 3.51
3224 3460 3.545078 CGTTCCGAATTACTTGTCGTAGG 59.455 47.826 0.00 0.00 35.48 3.18
3225 3461 4.488879 GTTCCGAATTACTTGTCGTAGGT 58.511 43.478 0.00 0.00 35.48 3.08
3226 3462 5.640732 GTTCCGAATTACTTGTCGTAGGTA 58.359 41.667 0.00 0.00 35.48 3.08
3227 3463 6.268566 GTTCCGAATTACTTGTCGTAGGTAT 58.731 40.000 0.00 0.00 35.48 2.73
3228 3464 5.824429 TCCGAATTACTTGTCGTAGGTATG 58.176 41.667 0.00 0.00 35.48 2.39
3229 3465 4.980434 CCGAATTACTTGTCGTAGGTATGG 59.020 45.833 0.00 0.00 35.48 2.74
3230 3466 5.221106 CCGAATTACTTGTCGTAGGTATGGA 60.221 44.000 0.00 0.00 35.48 3.41
3231 3467 6.444633 CGAATTACTTGTCGTAGGTATGGAT 58.555 40.000 0.00 0.00 32.61 3.41
3232 3468 6.362551 CGAATTACTTGTCGTAGGTATGGATG 59.637 42.308 0.00 0.00 32.61 3.51
3233 3469 6.726490 ATTACTTGTCGTAGGTATGGATGT 57.274 37.500 0.00 0.00 0.00 3.06
3234 3470 7.828508 ATTACTTGTCGTAGGTATGGATGTA 57.171 36.000 0.00 0.00 0.00 2.29
3235 3471 7.828508 TTACTTGTCGTAGGTATGGATGTAT 57.171 36.000 0.00 0.00 0.00 2.29
3236 3472 6.328641 ACTTGTCGTAGGTATGGATGTATC 57.671 41.667 0.00 0.00 0.00 2.24
3237 3473 6.069331 ACTTGTCGTAGGTATGGATGTATCT 58.931 40.000 0.00 0.00 0.00 1.98
3238 3474 7.229308 ACTTGTCGTAGGTATGGATGTATCTA 58.771 38.462 0.00 0.00 0.00 1.98
3239 3475 7.390996 ACTTGTCGTAGGTATGGATGTATCTAG 59.609 40.741 0.00 0.00 0.00 2.43
3240 3476 7.012661 TGTCGTAGGTATGGATGTATCTAGA 57.987 40.000 0.00 0.00 0.00 2.43
3241 3477 6.877855 TGTCGTAGGTATGGATGTATCTAGAC 59.122 42.308 0.00 0.00 0.00 2.59
3242 3478 6.035866 GTCGTAGGTATGGATGTATCTAGACG 59.964 46.154 0.00 0.00 31.34 4.18
3243 3479 5.873712 CGTAGGTATGGATGTATCTAGACGT 59.126 44.000 0.00 0.00 31.34 4.34
3244 3480 7.038048 CGTAGGTATGGATGTATCTAGACGTA 58.962 42.308 0.00 2.65 31.34 3.57
3245 3481 7.710044 CGTAGGTATGGATGTATCTAGACGTAT 59.290 40.741 0.00 0.00 34.26 3.06
3246 3482 9.393512 GTAGGTATGGATGTATCTAGACGTATT 57.606 37.037 0.00 0.00 34.26 1.89
3247 3483 8.880991 AGGTATGGATGTATCTAGACGTATTT 57.119 34.615 0.00 0.00 31.34 1.40
3248 3484 9.310449 AGGTATGGATGTATCTAGACGTATTTT 57.690 33.333 0.00 0.00 31.34 1.82
3271 3507 9.542462 TTTTAGTTCTAGATACATCCATTTCCG 57.458 33.333 0.00 0.00 0.00 4.30
3272 3508 6.978674 AGTTCTAGATACATCCATTTCCGA 57.021 37.500 0.00 0.00 0.00 4.55
3273 3509 6.987386 AGTTCTAGATACATCCATTTCCGAG 58.013 40.000 0.00 0.00 0.00 4.63
3274 3510 6.778069 AGTTCTAGATACATCCATTTCCGAGA 59.222 38.462 0.00 0.00 0.00 4.04
3275 3511 6.576662 TCTAGATACATCCATTTCCGAGAC 57.423 41.667 0.00 0.00 0.00 3.36
3276 3512 6.068670 TCTAGATACATCCATTTCCGAGACA 58.931 40.000 0.00 0.00 0.00 3.41
3277 3513 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
3278 3514 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
3279 3515 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
3280 3516 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
3281 3517 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
3282 3518 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
3283 3519 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
3284 3520 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
3285 3521 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
3286 3522 4.941263 CCATTTCCGAGACAAGTAATTCCA 59.059 41.667 0.00 0.00 0.00 3.53
3287 3523 5.414454 CCATTTCCGAGACAAGTAATTCCAA 59.586 40.000 0.00 0.00 0.00 3.53
3288 3524 6.072175 CCATTTCCGAGACAAGTAATTCCAAA 60.072 38.462 0.00 0.00 0.00 3.28
3289 3525 5.934935 TTCCGAGACAAGTAATTCCAAAC 57.065 39.130 0.00 0.00 0.00 2.93
3290 3526 3.991773 TCCGAGACAAGTAATTCCAAACG 59.008 43.478 0.00 0.00 0.00 3.60
3291 3527 3.124636 CCGAGACAAGTAATTCCAAACGG 59.875 47.826 0.00 0.00 0.00 4.44
3292 3528 3.991773 CGAGACAAGTAATTCCAAACGGA 59.008 43.478 0.00 0.00 0.00 4.69
3293 3529 4.091509 CGAGACAAGTAATTCCAAACGGAG 59.908 45.833 0.00 0.00 32.88 4.63
3294 3530 4.324267 AGACAAGTAATTCCAAACGGAGG 58.676 43.478 0.00 0.00 32.88 4.30
3295 3531 3.418047 ACAAGTAATTCCAAACGGAGGG 58.582 45.455 0.00 0.00 32.88 4.30
3296 3532 3.073356 ACAAGTAATTCCAAACGGAGGGA 59.927 43.478 0.00 0.00 32.88 4.20
3297 3533 3.629142 AGTAATTCCAAACGGAGGGAG 57.371 47.619 0.00 0.00 34.02 4.30
3298 3534 2.910977 AGTAATTCCAAACGGAGGGAGT 59.089 45.455 0.00 0.00 34.02 3.85
3299 3535 4.098894 AGTAATTCCAAACGGAGGGAGTA 58.901 43.478 0.00 0.00 34.02 2.59
3315 3551 4.714308 AGGGAGTAGAAGACAGGAGATTTG 59.286 45.833 0.00 0.00 0.00 2.32
3353 3594 0.179020 CTGCACACTCCACCCTTTCA 60.179 55.000 0.00 0.00 0.00 2.69
3356 3597 0.105964 CACACTCCACCCTTTCACGA 59.894 55.000 0.00 0.00 0.00 4.35
3361 3602 1.275291 CTCCACCCTTTCACGAAGCTA 59.725 52.381 0.00 0.00 33.84 3.32
3448 3773 8.608844 ATTTTCAGGTATCGGATAAAGATGAC 57.391 34.615 0.00 0.00 0.00 3.06
3469 3794 3.050619 CGTATCAGTTGGTAGGATTCGC 58.949 50.000 0.00 0.00 0.00 4.70
3502 3828 6.043411 GTCACAAGATGATAACAGAGGGTAC 58.957 44.000 0.00 0.00 40.28 3.34
3508 3834 5.361285 AGATGATAACAGAGGGTACACTCAC 59.639 44.000 26.59 10.72 39.97 3.51
3513 3839 2.433239 ACAGAGGGTACACTCACGTTTT 59.567 45.455 26.59 1.94 39.97 2.43
3517 3843 3.721035 AGGGTACACTCACGTTTTACAC 58.279 45.455 0.00 0.00 0.00 2.90
3522 3848 5.979517 GGTACACTCACGTTTTACACTTACT 59.020 40.000 0.00 0.00 0.00 2.24
3548 3875 8.522003 TGTTGTAATCATCTGTTTGTTATGCAT 58.478 29.630 3.79 3.79 0.00 3.96
3550 3877 7.408910 TGTAATCATCTGTTTGTTATGCATCG 58.591 34.615 0.19 0.00 0.00 3.84
3698 4025 2.767505 CTACTGAAGTGACCGCCTTTT 58.232 47.619 0.00 0.00 0.00 2.27
3720 4047 0.448990 CCATTGTCTCATGTGCCACG 59.551 55.000 0.00 0.00 0.00 4.94
3781 4109 1.210967 TCAACCCAGTTTTGGTCGTCT 59.789 47.619 0.00 0.00 43.40 4.18
3847 4182 4.261155 GCTTTAGTCATCTGTTGCACACAA 60.261 41.667 0.00 0.00 33.87 3.33
3859 4194 2.962089 CACACAAAAGTGCAGCCAC 58.038 52.632 0.00 0.00 42.39 5.01
3937 4279 4.149046 TGTTGCAAGTTTGTCGTTTGTTTC 59.851 37.500 0.00 0.00 0.00 2.78
4003 4393 3.403558 GAGGCCTCCTGTGGGGAC 61.404 72.222 23.19 0.00 39.58 4.46
4101 4493 1.303317 CCGCTGTAACCTTTGCCCT 60.303 57.895 0.00 0.00 0.00 5.19
4110 4502 2.285773 CCTTTGCCCTGAAAGCCCC 61.286 63.158 0.00 0.00 32.45 5.80
4149 4542 7.521099 CGCCTTGTGAAATCTATATGAATTGCT 60.521 37.037 0.00 0.00 0.00 3.91
4161 4554 2.756829 TGAATTGCTTTGTGTGCCATG 58.243 42.857 0.00 0.00 0.00 3.66
4163 4556 3.320256 TGAATTGCTTTGTGTGCCATGTA 59.680 39.130 0.00 0.00 0.00 2.29
4164 4557 2.791383 TTGCTTTGTGTGCCATGTAC 57.209 45.000 0.00 0.00 0.00 2.90
4165 4558 0.590682 TGCTTTGTGTGCCATGTACG 59.409 50.000 0.00 0.00 0.00 3.67
4167 4560 1.399727 GCTTTGTGTGCCATGTACGAC 60.400 52.381 0.00 0.00 0.00 4.34
4168 4561 2.143122 CTTTGTGTGCCATGTACGACT 58.857 47.619 0.00 0.00 0.00 4.18
4223 4616 0.106015 GGATGCAAACTGGGGGCTAT 60.106 55.000 0.00 0.00 0.00 2.97
4301 4694 0.522626 TGGTTCGATGCATGTGCTTG 59.477 50.000 2.46 0.00 42.66 4.01
4314 4707 2.305928 TGTGCTTGCATGTACCTTGTT 58.694 42.857 16.31 0.00 0.00 2.83
4316 4709 3.052036 GTGCTTGCATGTACCTTGTTTG 58.948 45.455 9.30 0.00 0.00 2.93
4335 4728 5.159209 GTTTGATTCATGAACAGAAGCCTG 58.841 41.667 11.07 0.00 45.76 4.85
4337 4730 1.538047 TTCATGAACAGAAGCCTGGC 58.462 50.000 11.65 11.65 44.60 4.85
4345 4738 0.464013 CAGAAGCCTGGCCAGATCAG 60.464 60.000 34.91 20.10 36.77 2.90
4366 4759 2.922503 TTCTCACCAGGAGCGCCA 60.923 61.111 9.88 0.00 43.70 5.69
4398 4791 2.289010 ACTAAAACGTACAAGGACCCCG 60.289 50.000 0.00 0.00 0.00 5.73
4413 4806 3.330853 CCGATAGCTGGCGAACGC 61.331 66.667 10.81 10.81 41.06 4.84
4438 4831 1.033746 AGCAGGGGATGACATTTGCG 61.034 55.000 0.00 0.00 36.70 4.85
4442 4835 0.098728 GGGGATGACATTTGCGAACG 59.901 55.000 0.00 0.00 0.00 3.95
4443 4836 1.083489 GGGATGACATTTGCGAACGA 58.917 50.000 0.00 0.00 0.00 3.85
4444 4837 1.466950 GGGATGACATTTGCGAACGAA 59.533 47.619 0.00 0.00 0.00 3.85
4445 4838 2.505866 GGATGACATTTGCGAACGAAC 58.494 47.619 0.00 0.00 0.00 3.95
4446 4839 2.158143 GATGACATTTGCGAACGAACG 58.842 47.619 0.00 0.00 0.00 3.95
4467 4860 2.599597 GCCAGCAGGGGATGACAT 59.400 61.111 0.00 0.00 37.04 3.06
4468 4861 1.076485 GCCAGCAGGGGATGACATT 60.076 57.895 0.00 0.00 37.04 2.71
4469 4862 0.685458 GCCAGCAGGGGATGACATTT 60.685 55.000 0.00 0.00 37.04 2.32
4470 4863 1.108776 CCAGCAGGGGATGACATTTG 58.891 55.000 0.00 0.00 30.05 2.32
4471 4864 0.458669 CAGCAGGGGATGACATTTGC 59.541 55.000 0.00 0.00 30.05 3.68
4472 4865 1.033746 AGCAGGGGATGACATTTGCG 61.034 55.000 0.00 0.00 36.70 4.85
4473 4866 1.031571 GCAGGGGATGACATTTGCGA 61.032 55.000 0.00 0.00 0.00 5.10
4474 4867 1.462616 CAGGGGATGACATTTGCGAA 58.537 50.000 0.00 0.00 0.00 4.70
4475 4868 1.133025 CAGGGGATGACATTTGCGAAC 59.867 52.381 0.00 0.00 0.00 3.95
4476 4869 0.098728 GGGGATGACATTTGCGAACG 59.901 55.000 0.00 0.00 0.00 3.95
4477 4870 1.083489 GGGATGACATTTGCGAACGA 58.917 50.000 0.00 0.00 0.00 3.85
4478 4871 1.670811 GGGATGACATTTGCGAACGAT 59.329 47.619 0.00 0.00 0.00 3.73
4479 4872 2.097466 GGGATGACATTTGCGAACGATT 59.903 45.455 0.00 0.00 0.00 3.34
4480 4873 3.427503 GGGATGACATTTGCGAACGATTT 60.428 43.478 0.00 0.00 0.00 2.17
4481 4874 3.543494 GGATGACATTTGCGAACGATTTG 59.457 43.478 0.00 0.00 0.00 2.32
4482 4875 2.927429 TGACATTTGCGAACGATTTGG 58.073 42.857 0.00 0.00 0.00 3.28
4483 4876 2.550180 TGACATTTGCGAACGATTTGGA 59.450 40.909 0.00 0.00 0.00 3.53
4484 4877 3.190327 TGACATTTGCGAACGATTTGGAT 59.810 39.130 0.00 0.00 0.00 3.41
4485 4878 3.500982 ACATTTGCGAACGATTTGGATG 58.499 40.909 0.00 0.00 0.00 3.51
4486 4879 2.627863 TTTGCGAACGATTTGGATGG 57.372 45.000 0.00 0.00 0.00 3.51
4487 4880 0.170116 TTGCGAACGATTTGGATGGC 59.830 50.000 0.00 0.00 0.00 4.40
4488 4881 0.957888 TGCGAACGATTTGGATGGCA 60.958 50.000 0.00 0.00 0.00 4.92
4489 4882 0.248215 GCGAACGATTTGGATGGCAG 60.248 55.000 0.00 0.00 0.00 4.85
4490 4883 1.086696 CGAACGATTTGGATGGCAGT 58.913 50.000 0.00 0.00 0.00 4.40
4491 4884 1.468520 CGAACGATTTGGATGGCAGTT 59.531 47.619 0.00 0.00 0.00 3.16
4492 4885 2.095263 CGAACGATTTGGATGGCAGTTT 60.095 45.455 0.00 0.00 0.00 2.66
4493 4886 3.611530 CGAACGATTTGGATGGCAGTTTT 60.612 43.478 0.00 0.00 0.00 2.43
4494 4887 4.378978 CGAACGATTTGGATGGCAGTTTTA 60.379 41.667 0.00 0.00 0.00 1.52
4495 4888 4.701956 ACGATTTGGATGGCAGTTTTAG 57.298 40.909 0.00 0.00 0.00 1.85
4496 4889 4.079253 ACGATTTGGATGGCAGTTTTAGT 58.921 39.130 0.00 0.00 0.00 2.24
4497 4890 4.522789 ACGATTTGGATGGCAGTTTTAGTT 59.477 37.500 0.00 0.00 0.00 2.24
4498 4891 4.858692 CGATTTGGATGGCAGTTTTAGTTG 59.141 41.667 0.00 0.00 0.00 3.16
4499 4892 4.599047 TTTGGATGGCAGTTTTAGTTGG 57.401 40.909 0.00 0.00 0.00 3.77
4500 4893 3.517296 TGGATGGCAGTTTTAGTTGGA 57.483 42.857 0.00 0.00 0.00 3.53
4501 4894 3.420893 TGGATGGCAGTTTTAGTTGGAG 58.579 45.455 0.00 0.00 0.00 3.86
4502 4895 3.181434 TGGATGGCAGTTTTAGTTGGAGT 60.181 43.478 0.00 0.00 0.00 3.85
4503 4896 4.042311 TGGATGGCAGTTTTAGTTGGAGTA 59.958 41.667 0.00 0.00 0.00 2.59
4504 4897 5.007682 GGATGGCAGTTTTAGTTGGAGTAA 58.992 41.667 0.00 0.00 0.00 2.24
4505 4898 5.652452 GGATGGCAGTTTTAGTTGGAGTAAT 59.348 40.000 0.00 0.00 0.00 1.89
4506 4899 5.957842 TGGCAGTTTTAGTTGGAGTAATG 57.042 39.130 0.00 0.00 0.00 1.90
4507 4900 4.217550 TGGCAGTTTTAGTTGGAGTAATGC 59.782 41.667 0.00 0.00 0.00 3.56
4508 4901 4.459337 GGCAGTTTTAGTTGGAGTAATGCT 59.541 41.667 0.00 0.00 0.00 3.79
4509 4902 5.646360 GGCAGTTTTAGTTGGAGTAATGCTA 59.354 40.000 0.00 0.00 0.00 3.49
4510 4903 6.403309 GGCAGTTTTAGTTGGAGTAATGCTAC 60.403 42.308 0.00 0.00 0.00 3.58
4511 4904 6.148811 GCAGTTTTAGTTGGAGTAATGCTACA 59.851 38.462 0.00 0.00 35.94 2.74
4512 4905 7.519002 CAGTTTTAGTTGGAGTAATGCTACAC 58.481 38.462 0.00 0.00 37.88 2.90
4513 4906 6.367969 AGTTTTAGTTGGAGTAATGCTACACG 59.632 38.462 0.00 0.00 37.88 4.49
4514 4907 3.955650 AGTTGGAGTAATGCTACACGT 57.044 42.857 0.00 0.00 37.88 4.49
4515 4908 6.513806 TTAGTTGGAGTAATGCTACACGTA 57.486 37.500 0.00 0.00 37.88 3.57
4516 4909 5.593679 AGTTGGAGTAATGCTACACGTAT 57.406 39.130 0.00 0.00 37.88 3.06
4517 4910 6.704289 AGTTGGAGTAATGCTACACGTATA 57.296 37.500 0.00 0.00 37.88 1.47
4518 4911 7.104043 AGTTGGAGTAATGCTACACGTATAA 57.896 36.000 0.00 0.00 37.88 0.98
4519 4912 7.549839 AGTTGGAGTAATGCTACACGTATAAA 58.450 34.615 0.00 0.00 37.88 1.40
4520 4913 7.490402 AGTTGGAGTAATGCTACACGTATAAAC 59.510 37.037 0.00 0.00 37.88 2.01
4543 4936 8.677871 AACGAGTTACAAGGTTTTACAAAAAG 57.322 30.769 0.00 0.00 0.00 2.27
4544 4937 7.252708 ACGAGTTACAAGGTTTTACAAAAAGG 58.747 34.615 0.00 0.00 0.00 3.11
4545 4938 6.693978 CGAGTTACAAGGTTTTACAAAAAGGG 59.306 38.462 0.00 0.00 0.00 3.95
4546 4939 7.484993 AGTTACAAGGTTTTACAAAAAGGGT 57.515 32.000 0.00 0.00 0.00 4.34
4547 4940 7.909518 AGTTACAAGGTTTTACAAAAAGGGTT 58.090 30.769 0.00 0.00 0.00 4.11
4548 4941 9.033711 AGTTACAAGGTTTTACAAAAAGGGTTA 57.966 29.630 0.00 0.00 0.00 2.85
4549 4942 9.650539 GTTACAAGGTTTTACAAAAAGGGTTAA 57.349 29.630 0.00 0.00 0.00 2.01
4552 4945 9.742144 ACAAGGTTTTACAAAAAGGGTTAATTT 57.258 25.926 0.00 0.00 0.00 1.82
4553 4946 9.995957 CAAGGTTTTACAAAAAGGGTTAATTTG 57.004 29.630 0.00 0.00 39.38 2.32
4554 4947 9.961264 AAGGTTTTACAAAAAGGGTTAATTTGA 57.039 25.926 5.68 0.00 37.46 2.69
4559 4952 9.907229 TTTACAAAAAGGGTTAATTTGATTGGT 57.093 25.926 5.68 0.00 37.46 3.67
4560 4953 9.549078 TTACAAAAAGGGTTAATTTGATTGGTC 57.451 29.630 5.68 0.00 37.46 4.02
4561 4954 7.569240 ACAAAAAGGGTTAATTTGATTGGTCA 58.431 30.769 5.68 0.00 37.46 4.02
4562 4955 8.049721 ACAAAAAGGGTTAATTTGATTGGTCAA 58.950 29.630 5.68 0.00 42.41 3.18
4563 4956 9.065798 CAAAAAGGGTTAATTTGATTGGTCAAT 57.934 29.630 0.00 0.00 43.49 2.57
4565 4958 9.942850 AAAAGGGTTAATTTGATTGGTCAATAG 57.057 29.630 0.00 0.00 43.49 1.73
4566 4959 8.893563 AAGGGTTAATTTGATTGGTCAATAGA 57.106 30.769 0.00 0.00 43.49 1.98
4567 4960 9.492730 AAGGGTTAATTTGATTGGTCAATAGAT 57.507 29.630 0.00 0.00 43.49 1.98
4568 4961 8.917088 AGGGTTAATTTGATTGGTCAATAGATG 58.083 33.333 0.00 0.00 43.49 2.90
4569 4962 8.143835 GGGTTAATTTGATTGGTCAATAGATGG 58.856 37.037 0.00 0.00 43.49 3.51
4570 4963 8.143835 GGTTAATTTGATTGGTCAATAGATGGG 58.856 37.037 0.00 0.00 43.49 4.00
4571 4964 6.736110 AATTTGATTGGTCAATAGATGGGG 57.264 37.500 0.00 0.00 43.49 4.96
4572 4965 5.464588 TTTGATTGGTCAATAGATGGGGA 57.535 39.130 0.00 0.00 43.49 4.81
4573 4966 4.712051 TGATTGGTCAATAGATGGGGAG 57.288 45.455 0.00 0.00 0.00 4.30
4574 4967 3.395607 TGATTGGTCAATAGATGGGGAGG 59.604 47.826 0.00 0.00 0.00 4.30
4575 4968 1.140312 TGGTCAATAGATGGGGAGGC 58.860 55.000 0.00 0.00 0.00 4.70
4576 4969 0.035458 GGTCAATAGATGGGGAGGCG 59.965 60.000 0.00 0.00 0.00 5.52
4577 4970 0.035458 GTCAATAGATGGGGAGGCGG 59.965 60.000 0.00 0.00 0.00 6.13
4578 4971 1.302832 CAATAGATGGGGAGGCGGC 60.303 63.158 0.00 0.00 0.00 6.53
4579 4972 2.529744 AATAGATGGGGAGGCGGCC 61.530 63.158 12.11 12.11 0.00 6.13
4592 4985 3.738481 CGGCCCATCCCCCTGAAA 61.738 66.667 0.00 0.00 0.00 2.69
4593 4986 2.777146 GGCCCATCCCCCTGAAAA 59.223 61.111 0.00 0.00 0.00 2.29
4594 4987 1.314518 GGCCCATCCCCCTGAAAAT 59.685 57.895 0.00 0.00 0.00 1.82
4595 4988 0.760567 GGCCCATCCCCCTGAAAATC 60.761 60.000 0.00 0.00 0.00 2.17
4596 4989 0.032217 GCCCATCCCCCTGAAAATCA 60.032 55.000 0.00 0.00 0.00 2.57
4597 4990 2.031097 GCCCATCCCCCTGAAAATCAG 61.031 57.143 0.32 0.32 43.91 2.90
4615 5008 3.777556 GGGGGAGGCAAGTTTGTG 58.222 61.111 0.00 0.00 0.00 3.33
4616 5009 1.152830 GGGGGAGGCAAGTTTGTGA 59.847 57.895 0.00 0.00 0.00 3.58
4617 5010 0.251787 GGGGGAGGCAAGTTTGTGAT 60.252 55.000 0.00 0.00 0.00 3.06
4618 5011 1.632589 GGGGAGGCAAGTTTGTGATT 58.367 50.000 0.00 0.00 0.00 2.57
4619 5012 1.273327 GGGGAGGCAAGTTTGTGATTG 59.727 52.381 0.00 0.00 0.00 2.67
4620 5013 1.273327 GGGAGGCAAGTTTGTGATTGG 59.727 52.381 0.00 0.00 0.00 3.16
4621 5014 1.963515 GGAGGCAAGTTTGTGATTGGT 59.036 47.619 0.00 0.00 0.00 3.67
4622 5015 2.365293 GGAGGCAAGTTTGTGATTGGTT 59.635 45.455 0.00 0.00 0.00 3.67
4623 5016 3.572255 GGAGGCAAGTTTGTGATTGGTTA 59.428 43.478 0.00 0.00 0.00 2.85
4624 5017 4.321230 GGAGGCAAGTTTGTGATTGGTTAG 60.321 45.833 0.00 0.00 0.00 2.34
4625 5018 4.215109 AGGCAAGTTTGTGATTGGTTAGT 58.785 39.130 0.00 0.00 0.00 2.24
4626 5019 5.381757 AGGCAAGTTTGTGATTGGTTAGTA 58.618 37.500 0.00 0.00 0.00 1.82
4627 5020 5.473504 AGGCAAGTTTGTGATTGGTTAGTAG 59.526 40.000 0.00 0.00 0.00 2.57
4628 5021 5.472137 GGCAAGTTTGTGATTGGTTAGTAGA 59.528 40.000 0.00 0.00 0.00 2.59
4629 5022 6.151144 GGCAAGTTTGTGATTGGTTAGTAGAT 59.849 38.462 0.00 0.00 0.00 1.98
4630 5023 7.023575 GCAAGTTTGTGATTGGTTAGTAGATG 58.976 38.462 0.00 0.00 0.00 2.90
4631 5024 7.530010 CAAGTTTGTGATTGGTTAGTAGATGG 58.470 38.462 0.00 0.00 0.00 3.51
4632 5025 7.016153 AGTTTGTGATTGGTTAGTAGATGGA 57.984 36.000 0.00 0.00 0.00 3.41
4633 5026 7.458397 AGTTTGTGATTGGTTAGTAGATGGAA 58.542 34.615 0.00 0.00 0.00 3.53
4634 5027 7.942341 AGTTTGTGATTGGTTAGTAGATGGAAA 59.058 33.333 0.00 0.00 0.00 3.13
4635 5028 8.573035 GTTTGTGATTGGTTAGTAGATGGAAAA 58.427 33.333 0.00 0.00 0.00 2.29
4636 5029 8.698973 TTGTGATTGGTTAGTAGATGGAAAAA 57.301 30.769 0.00 0.00 0.00 1.94
4658 5051 6.787085 AAATCCTAGTCAGCGTATAATTGC 57.213 37.500 0.00 0.00 0.00 3.56
4659 5052 3.897325 TCCTAGTCAGCGTATAATTGCG 58.103 45.455 0.00 0.00 35.87 4.85
4660 5053 3.317149 TCCTAGTCAGCGTATAATTGCGT 59.683 43.478 0.00 0.00 35.87 5.24
4661 5054 3.425525 CCTAGTCAGCGTATAATTGCGTG 59.574 47.826 0.00 0.00 35.87 5.34
4662 5055 2.888594 AGTCAGCGTATAATTGCGTGT 58.111 42.857 0.00 0.00 35.87 4.49
4663 5056 4.036567 AGTCAGCGTATAATTGCGTGTA 57.963 40.909 0.00 0.00 35.87 2.90
4664 5057 4.426416 AGTCAGCGTATAATTGCGTGTAA 58.574 39.130 0.00 0.00 35.87 2.41
4665 5058 4.266976 AGTCAGCGTATAATTGCGTGTAAC 59.733 41.667 0.00 0.00 35.87 2.50
4666 5059 4.266976 GTCAGCGTATAATTGCGTGTAACT 59.733 41.667 0.00 0.00 35.87 2.24
4667 5060 4.865925 TCAGCGTATAATTGCGTGTAACTT 59.134 37.500 0.00 0.00 35.87 2.66
4668 5061 5.349270 TCAGCGTATAATTGCGTGTAACTTT 59.651 36.000 0.00 0.00 35.87 2.66
4669 5062 6.019152 CAGCGTATAATTGCGTGTAACTTTT 58.981 36.000 0.00 0.00 35.87 2.27
4670 5063 6.521821 CAGCGTATAATTGCGTGTAACTTTTT 59.478 34.615 0.00 0.00 35.87 1.94
4671 5064 6.521821 AGCGTATAATTGCGTGTAACTTTTTG 59.478 34.615 0.00 0.00 35.87 2.44
4672 5065 6.303733 GCGTATAATTGCGTGTAACTTTTTGT 59.696 34.615 0.00 0.00 33.09 2.83
4673 5066 7.478044 GCGTATAATTGCGTGTAACTTTTTGTA 59.522 33.333 0.00 0.00 33.09 2.41
4674 5067 9.480538 CGTATAATTGCGTGTAACTTTTTGTAT 57.519 29.630 0.00 0.00 31.75 2.29
4677 5070 7.995463 AATTGCGTGTAACTTTTTGTATGTT 57.005 28.000 0.00 0.00 31.75 2.71
4678 5071 7.995463 ATTGCGTGTAACTTTTTGTATGTTT 57.005 28.000 0.00 0.00 31.75 2.83
4679 5072 9.517609 AATTGCGTGTAACTTTTTGTATGTTTA 57.482 25.926 0.00 0.00 31.75 2.01
4680 5073 8.549777 TTGCGTGTAACTTTTTGTATGTTTAG 57.450 30.769 0.00 0.00 31.75 1.85
4681 5074 6.633634 TGCGTGTAACTTTTTGTATGTTTAGC 59.366 34.615 0.00 0.00 31.75 3.09
4682 5075 6.633634 GCGTGTAACTTTTTGTATGTTTAGCA 59.366 34.615 0.00 0.00 31.75 3.49
4683 5076 7.325097 GCGTGTAACTTTTTGTATGTTTAGCAT 59.675 33.333 0.00 0.00 36.70 3.79
4684 5077 9.176181 CGTGTAACTTTTTGTATGTTTAGCATT 57.824 29.630 0.00 0.00 35.02 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 171 4.811024 TGAGTTTCTCAATCACGCATATCC 59.189 41.667 0.00 0.00 37.57 2.59
333 339 6.394025 TTTAACAAACAAAATAGTCCGCCT 57.606 33.333 0.00 0.00 0.00 5.52
512 552 4.043200 GCAACTCCAACTGGCCGC 62.043 66.667 0.00 0.00 34.44 6.53
538 578 1.126296 GACCGTCGCTAAACTTGAAGC 59.874 52.381 0.00 0.00 35.33 3.86
539 579 2.400399 TGACCGTCGCTAAACTTGAAG 58.600 47.619 0.00 0.00 0.00 3.02
540 580 2.512485 TGACCGTCGCTAAACTTGAA 57.488 45.000 0.00 0.00 0.00 2.69
541 581 2.734606 CAATGACCGTCGCTAAACTTGA 59.265 45.455 0.00 0.00 0.00 3.02
542 582 2.159707 CCAATGACCGTCGCTAAACTTG 60.160 50.000 0.00 0.00 0.00 3.16
543 583 2.073816 CCAATGACCGTCGCTAAACTT 58.926 47.619 0.00 0.00 0.00 2.66
544 584 1.001633 ACCAATGACCGTCGCTAAACT 59.998 47.619 0.00 0.00 0.00 2.66
545 585 1.435577 ACCAATGACCGTCGCTAAAC 58.564 50.000 0.00 0.00 0.00 2.01
546 586 2.172851 AACCAATGACCGTCGCTAAA 57.827 45.000 0.00 0.00 0.00 1.85
547 587 2.070783 GAAACCAATGACCGTCGCTAA 58.929 47.619 0.00 0.00 0.00 3.09
548 588 1.673626 GGAAACCAATGACCGTCGCTA 60.674 52.381 0.00 0.00 0.00 4.26
549 589 0.953960 GGAAACCAATGACCGTCGCT 60.954 55.000 0.00 0.00 0.00 4.93
550 590 1.500396 GGAAACCAATGACCGTCGC 59.500 57.895 0.00 0.00 0.00 5.19
551 591 1.785321 CGGAAACCAATGACCGTCG 59.215 57.895 0.00 0.00 40.42 5.12
555 595 0.794473 GACGACGGAAACCAATGACC 59.206 55.000 0.00 0.00 0.00 4.02
556 596 1.792006 AGACGACGGAAACCAATGAC 58.208 50.000 0.00 0.00 0.00 3.06
557 597 2.536761 AAGACGACGGAAACCAATGA 57.463 45.000 0.00 0.00 0.00 2.57
558 598 4.735662 TTAAAGACGACGGAAACCAATG 57.264 40.909 0.00 0.00 0.00 2.82
559 599 5.390145 CGAATTAAAGACGACGGAAACCAAT 60.390 40.000 0.00 0.00 0.00 3.16
560 600 4.084433 CGAATTAAAGACGACGGAAACCAA 60.084 41.667 0.00 0.00 0.00 3.67
561 601 3.429543 CGAATTAAAGACGACGGAAACCA 59.570 43.478 0.00 0.00 0.00 3.67
562 602 3.722957 GCGAATTAAAGACGACGGAAACC 60.723 47.826 0.00 0.00 0.00 3.27
563 603 3.401886 GCGAATTAAAGACGACGGAAAC 58.598 45.455 0.00 0.00 0.00 2.78
564 604 2.090967 CGCGAATTAAAGACGACGGAAA 59.909 45.455 0.00 0.00 0.00 3.13
565 605 1.650153 CGCGAATTAAAGACGACGGAA 59.350 47.619 0.00 0.00 0.00 4.30
566 606 1.261989 CGCGAATTAAAGACGACGGA 58.738 50.000 0.00 0.00 0.00 4.69
567 607 0.986992 ACGCGAATTAAAGACGACGG 59.013 50.000 15.93 0.00 33.70 4.79
568 608 1.909532 AGACGCGAATTAAAGACGACG 59.090 47.619 15.93 0.00 34.76 5.12
569 609 5.678483 TGTATAGACGCGAATTAAAGACGAC 59.322 40.000 15.93 0.00 0.00 4.34
570 610 5.809464 TGTATAGACGCGAATTAAAGACGA 58.191 37.500 15.93 0.00 0.00 4.20
571 611 6.021232 TGTTGTATAGACGCGAATTAAAGACG 60.021 38.462 15.93 0.00 0.00 4.18
572 612 7.109257 GTGTTGTATAGACGCGAATTAAAGAC 58.891 38.462 15.93 3.69 0.00 3.01
573 613 6.807720 TGTGTTGTATAGACGCGAATTAAAGA 59.192 34.615 15.93 0.00 0.00 2.52
574 614 6.892951 GTGTGTTGTATAGACGCGAATTAAAG 59.107 38.462 15.93 0.00 0.00 1.85
575 615 6.183360 GGTGTGTTGTATAGACGCGAATTAAA 60.183 38.462 15.93 0.00 31.64 1.52
576 616 5.289193 GGTGTGTTGTATAGACGCGAATTAA 59.711 40.000 15.93 0.15 31.64 1.40
577 617 4.799949 GGTGTGTTGTATAGACGCGAATTA 59.200 41.667 15.93 1.79 31.64 1.40
578 618 3.615496 GGTGTGTTGTATAGACGCGAATT 59.385 43.478 15.93 0.00 31.64 2.17
579 619 3.184541 GGTGTGTTGTATAGACGCGAAT 58.815 45.455 15.93 5.80 31.64 3.34
580 620 2.598589 GGTGTGTTGTATAGACGCGAA 58.401 47.619 15.93 0.00 31.64 4.70
581 621 1.135315 GGGTGTGTTGTATAGACGCGA 60.135 52.381 15.93 0.00 31.64 5.87
582 622 1.274596 GGGTGTGTTGTATAGACGCG 58.725 55.000 3.53 3.53 31.64 6.01
583 623 1.206371 AGGGGTGTGTTGTATAGACGC 59.794 52.381 0.00 0.00 0.00 5.19
584 624 3.056393 TCAAGGGGTGTGTTGTATAGACG 60.056 47.826 0.00 0.00 0.00 4.18
585 625 4.504858 CTCAAGGGGTGTGTTGTATAGAC 58.495 47.826 0.00 0.00 0.00 2.59
586 626 3.055385 GCTCAAGGGGTGTGTTGTATAGA 60.055 47.826 0.00 0.00 0.00 1.98
587 627 3.270877 GCTCAAGGGGTGTGTTGTATAG 58.729 50.000 0.00 0.00 0.00 1.31
588 628 2.026636 GGCTCAAGGGGTGTGTTGTATA 60.027 50.000 0.00 0.00 0.00 1.47
589 629 1.271926 GGCTCAAGGGGTGTGTTGTAT 60.272 52.381 0.00 0.00 0.00 2.29
590 630 0.109723 GGCTCAAGGGGTGTGTTGTA 59.890 55.000 0.00 0.00 0.00 2.41
591 631 1.152756 GGCTCAAGGGGTGTGTTGT 60.153 57.895 0.00 0.00 0.00 3.32
592 632 1.152777 TGGCTCAAGGGGTGTGTTG 60.153 57.895 0.00 0.00 0.00 3.33
593 633 1.152756 GTGGCTCAAGGGGTGTGTT 60.153 57.895 0.00 0.00 0.00 3.32
594 634 1.719063 ATGTGGCTCAAGGGGTGTGT 61.719 55.000 0.00 0.00 0.00 3.72
595 635 0.327924 TATGTGGCTCAAGGGGTGTG 59.672 55.000 0.00 0.00 0.00 3.82
596 636 0.328258 GTATGTGGCTCAAGGGGTGT 59.672 55.000 0.00 0.00 0.00 4.16
597 637 0.327924 TGTATGTGGCTCAAGGGGTG 59.672 55.000 0.00 0.00 0.00 4.61
598 638 0.328258 GTGTATGTGGCTCAAGGGGT 59.672 55.000 0.00 0.00 0.00 4.95
599 639 0.327924 TGTGTATGTGGCTCAAGGGG 59.672 55.000 0.00 0.00 0.00 4.79
600 640 2.425143 ATGTGTATGTGGCTCAAGGG 57.575 50.000 0.00 0.00 0.00 3.95
601 641 3.817084 CCATATGTGTATGTGGCTCAAGG 59.183 47.826 1.24 0.00 38.51 3.61
608 648 5.213891 TGTAGAGCCATATGTGTATGTGG 57.786 43.478 1.24 0.00 45.51 4.17
613 653 8.784043 CGCTATATATGTAGAGCCATATGTGTA 58.216 37.037 10.45 0.00 41.09 2.90
614 654 7.285629 ACGCTATATATGTAGAGCCATATGTGT 59.714 37.037 10.45 0.00 41.09 3.72
615 655 7.652727 ACGCTATATATGTAGAGCCATATGTG 58.347 38.462 10.45 0.00 41.09 3.21
616 656 7.825331 ACGCTATATATGTAGAGCCATATGT 57.175 36.000 10.45 0.15 41.09 2.29
617 657 9.186323 GAAACGCTATATATGTAGAGCCATATG 57.814 37.037 10.45 0.00 41.09 1.78
618 658 8.914011 TGAAACGCTATATATGTAGAGCCATAT 58.086 33.333 10.45 0.00 41.09 1.78
619 659 8.288689 TGAAACGCTATATATGTAGAGCCATA 57.711 34.615 10.45 0.00 41.09 2.74
620 660 7.170393 TGAAACGCTATATATGTAGAGCCAT 57.830 36.000 10.45 0.00 41.09 4.40
621 661 6.584185 TGAAACGCTATATATGTAGAGCCA 57.416 37.500 10.45 0.55 41.09 4.75
622 662 7.258441 TGATGAAACGCTATATATGTAGAGCC 58.742 38.462 10.45 0.00 41.09 4.70
623 663 8.750416 CATGATGAAACGCTATATATGTAGAGC 58.250 37.037 10.45 6.07 40.82 4.09
624 664 9.242477 CCATGATGAAACGCTATATATGTAGAG 57.758 37.037 10.45 9.36 0.00 2.43
625 665 7.706607 GCCATGATGAAACGCTATATATGTAGA 59.293 37.037 10.45 0.00 0.00 2.59
626 666 7.042456 GGCCATGATGAAACGCTATATATGTAG 60.042 40.741 0.00 2.25 0.00 2.74
627 667 6.761242 GGCCATGATGAAACGCTATATATGTA 59.239 38.462 0.00 0.00 0.00 2.29
628 668 5.586243 GGCCATGATGAAACGCTATATATGT 59.414 40.000 0.00 0.00 0.00 2.29
629 669 5.585844 TGGCCATGATGAAACGCTATATATG 59.414 40.000 0.00 0.00 0.00 1.78
630 670 5.744171 TGGCCATGATGAAACGCTATATAT 58.256 37.500 0.00 0.00 0.00 0.86
631 671 5.159273 TGGCCATGATGAAACGCTATATA 57.841 39.130 0.00 0.00 0.00 0.86
632 672 4.019792 TGGCCATGATGAAACGCTATAT 57.980 40.909 0.00 0.00 0.00 0.86
633 673 3.483808 TGGCCATGATGAAACGCTATA 57.516 42.857 0.00 0.00 0.00 1.31
634 674 2.346766 TGGCCATGATGAAACGCTAT 57.653 45.000 0.00 0.00 0.00 2.97
635 675 2.121291 TTGGCCATGATGAAACGCTA 57.879 45.000 6.09 0.00 0.00 4.26
636 676 1.203052 CTTTGGCCATGATGAAACGCT 59.797 47.619 6.09 0.00 0.00 5.07
637 677 1.202114 TCTTTGGCCATGATGAAACGC 59.798 47.619 6.09 0.00 0.00 4.84
663 703 2.612212 GAGAAAAGCAAGTGACGGAACA 59.388 45.455 0.00 0.00 0.00 3.18
673 713 6.202226 GTGTTTTGGTAGAGAGAAAAGCAAG 58.798 40.000 0.00 0.00 32.77 4.01
721 764 5.234752 GTGTTCCAACTTGGTGTTTTTCTT 58.765 37.500 7.72 0.00 39.03 2.52
723 766 3.610677 CGTGTTCCAACTTGGTGTTTTTC 59.389 43.478 7.72 0.00 39.03 2.29
727 770 2.116827 TCGTGTTCCAACTTGGTGTT 57.883 45.000 7.72 0.00 39.03 3.32
736 779 6.743110 TGAATTTTGATGATTCGTGTTCCAA 58.257 32.000 0.00 0.00 36.52 3.53
746 789 6.348213 GCTGCTGCTTTTGAATTTTGATGATT 60.348 34.615 8.53 0.00 36.03 2.57
747 790 5.121768 GCTGCTGCTTTTGAATTTTGATGAT 59.878 36.000 8.53 0.00 36.03 2.45
748 791 4.449743 GCTGCTGCTTTTGAATTTTGATGA 59.550 37.500 8.53 0.00 36.03 2.92
749 792 4.378046 GGCTGCTGCTTTTGAATTTTGATG 60.378 41.667 15.64 0.00 39.59 3.07
842 914 1.529244 GCTCGGGGAATGGGAATGG 60.529 63.158 0.00 0.00 0.00 3.16
850 922 1.740296 CGTTTCGTGCTCGGGGAAT 60.740 57.895 8.49 0.00 37.69 3.01
851 923 2.356553 CGTTTCGTGCTCGGGGAA 60.357 61.111 8.49 0.00 37.69 3.97
887 968 3.866582 GGGGAGGGGATCGTGCTG 61.867 72.222 0.00 0.00 0.00 4.41
888 969 4.095400 AGGGGAGGGGATCGTGCT 62.095 66.667 0.00 0.00 0.00 4.40
889 970 3.551407 GAGGGGAGGGGATCGTGC 61.551 72.222 0.00 0.00 0.00 5.34
890 971 2.844839 GGAGGGGAGGGGATCGTG 60.845 72.222 0.00 0.00 0.00 4.35
903 984 3.429580 GGGGATTGGGTGGGGAGG 61.430 72.222 0.00 0.00 0.00 4.30
904 985 3.429580 GGGGGATTGGGTGGGGAG 61.430 72.222 0.00 0.00 0.00 4.30
905 986 3.980600 AGGGGGATTGGGTGGGGA 61.981 66.667 0.00 0.00 0.00 4.81
949 1063 1.917336 TAGGGTTTTAGGGCGGCTGG 61.917 60.000 9.56 0.00 0.00 4.85
1300 1418 1.467556 CTGAAGAGCGCGATGTCGAC 61.468 60.000 12.10 9.11 43.02 4.20
1434 1552 2.588439 GCCTCGGGGTTAACCTCC 59.412 66.667 23.69 20.29 40.03 4.30
1440 1558 3.804329 GCCATGGCCTCGGGGTTA 61.804 66.667 27.24 0.00 34.56 2.85
1568 1686 0.899720 AGGGAACGAAAGGCGACATA 59.100 50.000 0.00 0.00 44.57 2.29
1623 1748 7.838696 TCTCAGCTATCCCATTTTCCAAATTAA 59.161 33.333 0.00 0.00 0.00 1.40
1626 1751 5.595952 GTCTCAGCTATCCCATTTTCCAAAT 59.404 40.000 0.00 0.00 0.00 2.32
1643 1770 4.142160 ACTTTGGTTTTCTTTGGTCTCAGC 60.142 41.667 0.00 0.00 0.00 4.26
1644 1771 5.358160 AGACTTTGGTTTTCTTTGGTCTCAG 59.642 40.000 0.00 0.00 0.00 3.35
1645 1772 5.261216 AGACTTTGGTTTTCTTTGGTCTCA 58.739 37.500 0.00 0.00 0.00 3.27
1660 1787 9.762933 TTCAGGATTCAAATTTAAAGACTTTGG 57.237 29.630 10.80 0.00 32.15 3.28
1691 1819 9.467796 TCTCTAATTCAAAGATGAGTCTAGTCA 57.532 33.333 0.00 0.00 36.78 3.41
1716 1845 8.845413 ATTCCTATGAACTATGAAGAAGCATC 57.155 34.615 0.00 0.00 32.13 3.91
1766 1895 7.486407 AAAAGGCATCACAATTAGGAGAAAT 57.514 32.000 0.00 0.00 0.00 2.17
1845 2030 8.345565 CCTATTGACAGGCTTAACATAAATCAC 58.654 37.037 0.00 0.00 0.00 3.06
1849 2034 6.826741 GTCCCTATTGACAGGCTTAACATAAA 59.173 38.462 0.00 0.00 35.29 1.40
1854 2039 4.489306 AGTCCCTATTGACAGGCTTAAC 57.511 45.455 0.00 0.00 37.73 2.01
1855 2040 5.013704 TGAAAGTCCCTATTGACAGGCTTAA 59.986 40.000 0.00 0.00 37.73 1.85
1967 2163 7.709269 ACATTTACATGACACATATCGGTAC 57.291 36.000 0.00 0.00 34.11 3.34
2002 2198 2.229792 TGGTCAGTCCAGAAATGCAAC 58.770 47.619 0.00 0.00 41.93 4.17
2003 2199 2.655090 TGGTCAGTCCAGAAATGCAA 57.345 45.000 0.00 0.00 41.93 4.08
2058 2254 1.963515 ACAACCATCCTTTTCACCTGC 59.036 47.619 0.00 0.00 0.00 4.85
2155 2351 6.316390 CACGAGCAAAATAGTAAGGGAGAAAT 59.684 38.462 0.00 0.00 0.00 2.17
2171 2370 2.483877 CTGATTTAGCACCACGAGCAAA 59.516 45.455 0.00 0.00 0.00 3.68
2292 2491 6.672147 ACAGTAAGAAATCAACTCAACATGC 58.328 36.000 0.00 0.00 0.00 4.06
2477 2676 5.643379 TTGATGGAGTAATGCAAAGAACC 57.357 39.130 0.00 0.00 0.00 3.62
2781 2993 3.308595 CCGAAAACAAGGAAAACAAAGCC 59.691 43.478 0.00 0.00 0.00 4.35
2801 3013 3.434299 ACCGTTTACAATTCTACTTGCCG 59.566 43.478 0.00 0.00 0.00 5.69
2906 3142 4.340950 AGGTGTGTTCTTTGTTTACATGGG 59.659 41.667 0.00 0.00 0.00 4.00
2916 3152 8.616076 GGATCATCTAATAAGGTGTGTTCTTTG 58.384 37.037 0.00 0.00 35.19 2.77
2946 3182 8.430801 ACAGCTAATACATCATGAAGAAGAAC 57.569 34.615 4.68 0.00 0.00 3.01
2955 3191 9.447040 CAGAATTTGAACAGCTAATACATCATG 57.553 33.333 0.00 0.00 0.00 3.07
2963 3199 9.768662 AACAATTTCAGAATTTGAACAGCTAAT 57.231 25.926 19.96 0.00 45.22 1.73
2966 3202 7.466320 GCAAACAATTTCAGAATTTGAACAGCT 60.466 33.333 19.96 0.00 45.22 4.24
2968 3204 7.686519 TGCAAACAATTTCAGAATTTGAACAG 58.313 30.769 19.96 10.33 45.22 3.16
3124 3360 1.967319 ATCGCCGCTCCAAATATGTT 58.033 45.000 0.00 0.00 0.00 2.71
3129 3365 0.887933 AACAAATCGCCGCTCCAAAT 59.112 45.000 0.00 0.00 0.00 2.32
3136 3372 4.639189 ATAAAAACAAACAAATCGCCGC 57.361 36.364 0.00 0.00 0.00 6.53
3146 3382 8.473796 GTGGAATGTACGTGAATAAAAACAAAC 58.526 33.333 0.00 0.00 0.00 2.93
3161 3397 4.747108 GGAATCTCATGAGTGGAATGTACG 59.253 45.833 21.92 0.00 0.00 3.67
3163 3399 6.070021 ACAAGGAATCTCATGAGTGGAATGTA 60.070 38.462 21.92 0.62 0.00 2.29
3173 3409 6.041409 GGAGTAGATCACAAGGAATCTCATGA 59.959 42.308 0.00 0.00 0.00 3.07
3201 3437 3.500982 TACGACAAGTAATTCGGAACGG 58.499 45.455 0.00 0.00 42.34 4.44
3202 3438 3.545078 CCTACGACAAGTAATTCGGAACG 59.455 47.826 0.00 0.00 44.64 3.95
3203 3439 4.488879 ACCTACGACAAGTAATTCGGAAC 58.511 43.478 0.00 0.00 39.63 3.62
3204 3440 4.789012 ACCTACGACAAGTAATTCGGAA 57.211 40.909 0.00 0.00 39.63 4.30
3205 3441 5.221106 CCATACCTACGACAAGTAATTCGGA 60.221 44.000 0.00 0.00 39.63 4.55
3206 3442 4.980434 CCATACCTACGACAAGTAATTCGG 59.020 45.833 0.00 0.00 39.63 4.30
3207 3443 5.824429 TCCATACCTACGACAAGTAATTCG 58.176 41.667 0.00 0.00 41.14 3.34
3208 3444 7.208080 ACATCCATACCTACGACAAGTAATTC 58.792 38.462 0.00 0.00 34.45 2.17
3209 3445 7.120923 ACATCCATACCTACGACAAGTAATT 57.879 36.000 0.00 0.00 34.45 1.40
3210 3446 6.726490 ACATCCATACCTACGACAAGTAAT 57.274 37.500 0.00 0.00 34.45 1.89
3211 3447 7.722728 AGATACATCCATACCTACGACAAGTAA 59.277 37.037 0.00 0.00 34.45 2.24
3212 3448 7.229308 AGATACATCCATACCTACGACAAGTA 58.771 38.462 0.00 0.00 0.00 2.24
3213 3449 6.069331 AGATACATCCATACCTACGACAAGT 58.931 40.000 0.00 0.00 0.00 3.16
3214 3450 6.576662 AGATACATCCATACCTACGACAAG 57.423 41.667 0.00 0.00 0.00 3.16
3215 3451 7.389884 GTCTAGATACATCCATACCTACGACAA 59.610 40.741 0.00 0.00 0.00 3.18
3216 3452 6.877855 GTCTAGATACATCCATACCTACGACA 59.122 42.308 0.00 0.00 0.00 4.35
3217 3453 6.035866 CGTCTAGATACATCCATACCTACGAC 59.964 46.154 0.00 0.00 0.00 4.34
3218 3454 6.104665 CGTCTAGATACATCCATACCTACGA 58.895 44.000 0.00 0.00 0.00 3.43
3219 3455 5.873712 ACGTCTAGATACATCCATACCTACG 59.126 44.000 0.00 0.00 0.00 3.51
3220 3456 8.961294 ATACGTCTAGATACATCCATACCTAC 57.039 38.462 0.00 0.00 0.00 3.18
3221 3457 9.970553 AAATACGTCTAGATACATCCATACCTA 57.029 33.333 0.00 0.00 0.00 3.08
3222 3458 8.880991 AAATACGTCTAGATACATCCATACCT 57.119 34.615 0.00 0.00 0.00 3.08
3245 3481 9.542462 CGGAAATGGATGTATCTAGAACTAAAA 57.458 33.333 0.00 0.00 0.00 1.52
3246 3482 8.920174 TCGGAAATGGATGTATCTAGAACTAAA 58.080 33.333 0.00 0.00 0.00 1.85
3247 3483 8.473358 TCGGAAATGGATGTATCTAGAACTAA 57.527 34.615 0.00 0.00 0.00 2.24
3248 3484 7.942894 TCTCGGAAATGGATGTATCTAGAACTA 59.057 37.037 0.00 0.00 0.00 2.24
3249 3485 6.778069 TCTCGGAAATGGATGTATCTAGAACT 59.222 38.462 0.00 0.00 0.00 3.01
3250 3486 6.864165 GTCTCGGAAATGGATGTATCTAGAAC 59.136 42.308 0.00 0.00 0.00 3.01
3251 3487 6.549736 TGTCTCGGAAATGGATGTATCTAGAA 59.450 38.462 0.00 0.00 0.00 2.10
3252 3488 6.068670 TGTCTCGGAAATGGATGTATCTAGA 58.931 40.000 0.00 0.00 0.00 2.43
3253 3489 6.332735 TGTCTCGGAAATGGATGTATCTAG 57.667 41.667 0.00 0.00 0.00 2.43
3254 3490 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
3255 3491 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
3256 3492 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
3257 3493 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
3258 3494 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
3259 3495 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
3260 3496 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
3261 3497 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
3262 3498 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
3263 3499 4.941263 TGGAATTACTTGTCTCGGAAATGG 59.059 41.667 0.00 0.00 0.00 3.16
3264 3500 6.494893 TTGGAATTACTTGTCTCGGAAATG 57.505 37.500 0.00 0.00 0.00 2.32
3265 3501 6.348213 CGTTTGGAATTACTTGTCTCGGAAAT 60.348 38.462 0.00 0.00 0.00 2.17
3266 3502 5.049954 CGTTTGGAATTACTTGTCTCGGAAA 60.050 40.000 0.00 0.00 0.00 3.13
3267 3503 4.449743 CGTTTGGAATTACTTGTCTCGGAA 59.550 41.667 0.00 0.00 0.00 4.30
3268 3504 3.991773 CGTTTGGAATTACTTGTCTCGGA 59.008 43.478 0.00 0.00 0.00 4.55
3269 3505 3.124636 CCGTTTGGAATTACTTGTCTCGG 59.875 47.826 0.00 0.00 37.49 4.63
3270 3506 3.991773 TCCGTTTGGAATTACTTGTCTCG 59.008 43.478 0.00 0.00 42.85 4.04
3271 3507 4.392138 CCTCCGTTTGGAATTACTTGTCTC 59.608 45.833 0.00 0.00 45.87 3.36
3272 3508 4.324267 CCTCCGTTTGGAATTACTTGTCT 58.676 43.478 0.00 0.00 45.87 3.41
3273 3509 3.439129 CCCTCCGTTTGGAATTACTTGTC 59.561 47.826 0.00 0.00 45.87 3.18
3274 3510 3.073356 TCCCTCCGTTTGGAATTACTTGT 59.927 43.478 0.00 0.00 45.87 3.16
3275 3511 3.681593 TCCCTCCGTTTGGAATTACTTG 58.318 45.455 0.00 0.00 45.87 3.16
3276 3512 3.329814 ACTCCCTCCGTTTGGAATTACTT 59.670 43.478 0.00 0.00 45.87 2.24
3277 3513 2.910977 ACTCCCTCCGTTTGGAATTACT 59.089 45.455 0.00 0.00 45.87 2.24
3278 3514 3.345508 ACTCCCTCCGTTTGGAATTAC 57.654 47.619 0.00 0.00 45.87 1.89
3279 3515 4.355549 TCTACTCCCTCCGTTTGGAATTA 58.644 43.478 0.00 0.00 45.87 1.40
3280 3516 3.178865 TCTACTCCCTCCGTTTGGAATT 58.821 45.455 0.00 0.00 45.87 2.17
3281 3517 2.829023 TCTACTCCCTCCGTTTGGAAT 58.171 47.619 0.00 0.00 45.87 3.01
3282 3518 2.314071 TCTACTCCCTCCGTTTGGAA 57.686 50.000 0.00 0.00 45.87 3.53
3283 3519 2.176889 CTTCTACTCCCTCCGTTTGGA 58.823 52.381 0.00 0.00 43.88 3.53
3284 3520 2.094130 GTCTTCTACTCCCTCCGTTTGG 60.094 54.545 0.00 0.00 0.00 3.28
3285 3521 2.561419 TGTCTTCTACTCCCTCCGTTTG 59.439 50.000 0.00 0.00 0.00 2.93
3286 3522 2.826725 CTGTCTTCTACTCCCTCCGTTT 59.173 50.000 0.00 0.00 0.00 3.60
3287 3523 2.448453 CTGTCTTCTACTCCCTCCGTT 58.552 52.381 0.00 0.00 0.00 4.44
3288 3524 1.341187 CCTGTCTTCTACTCCCTCCGT 60.341 57.143 0.00 0.00 0.00 4.69
3289 3525 1.064611 TCCTGTCTTCTACTCCCTCCG 60.065 57.143 0.00 0.00 0.00 4.63
3290 3526 2.242708 TCTCCTGTCTTCTACTCCCTCC 59.757 54.545 0.00 0.00 0.00 4.30
3291 3527 3.655615 TCTCCTGTCTTCTACTCCCTC 57.344 52.381 0.00 0.00 0.00 4.30
3292 3528 4.618378 AATCTCCTGTCTTCTACTCCCT 57.382 45.455 0.00 0.00 0.00 4.20
3293 3529 4.468153 ACAAATCTCCTGTCTTCTACTCCC 59.532 45.833 0.00 0.00 0.00 4.30
3294 3530 5.669164 ACAAATCTCCTGTCTTCTACTCC 57.331 43.478 0.00 0.00 0.00 3.85
3295 3531 9.660180 AAATAACAAATCTCCTGTCTTCTACTC 57.340 33.333 0.00 0.00 0.00 2.59
3328 3564 1.140852 GGGTGGAGTGTGCAGCATATA 59.859 52.381 0.00 0.00 37.97 0.86
3335 3571 0.465460 GTGAAAGGGTGGAGTGTGCA 60.465 55.000 0.00 0.00 0.00 4.57
3336 3572 1.507141 CGTGAAAGGGTGGAGTGTGC 61.507 60.000 0.00 0.00 0.00 4.57
3361 3602 6.415206 TTCTAACAAGTAACAGGCTAGTGT 57.585 37.500 0.00 0.00 0.00 3.55
3371 3612 8.813643 TCTGCTCTACTTTTCTAACAAGTAAC 57.186 34.615 0.00 0.00 36.51 2.50
3372 3613 9.998106 AATCTGCTCTACTTTTCTAACAAGTAA 57.002 29.630 0.00 0.00 36.51 2.24
3415 3740 9.760077 TTATCCGATACCTGAAAATTAGAGTTC 57.240 33.333 0.00 0.00 0.00 3.01
3448 3773 3.050619 GCGAATCCTACCAACTGATACG 58.949 50.000 0.00 0.00 0.00 3.06
3469 3794 3.407424 TCATCTTGTGACAAGTCCTGG 57.593 47.619 23.17 10.57 0.00 4.45
3502 3828 5.961395 ACAGTAAGTGTAAAACGTGAGTG 57.039 39.130 0.00 0.00 40.47 3.51
3508 3834 9.525007 GATGATTACAACAGTAAGTGTAAAACG 57.475 33.333 1.32 0.00 39.03 3.60
3513 3839 9.772973 AAACAGATGATTACAACAGTAAGTGTA 57.227 29.630 0.00 0.00 39.03 2.90
3522 3848 7.880105 TGCATAACAAACAGATGATTACAACA 58.120 30.769 0.00 0.00 0.00 3.33
3548 3875 3.568007 AGGAACATTTTAAGTGCAAGCGA 59.432 39.130 0.00 0.00 0.00 4.93
3550 3877 4.620982 ACAGGAACATTTTAAGTGCAAGC 58.379 39.130 0.00 0.00 0.00 4.01
3555 3882 6.819649 TCCGGTATACAGGAACATTTTAAGTG 59.180 38.462 20.80 0.00 37.28 3.16
3698 4025 3.081061 GTGGCACATGAGACAATGGTAA 58.919 45.455 13.86 0.00 44.52 2.85
3802 4130 2.492484 CCGTCTTACACTTCTGCTAGGT 59.508 50.000 0.00 0.00 0.00 3.08
3803 4131 2.159226 CCCGTCTTACACTTCTGCTAGG 60.159 54.545 0.00 0.00 0.00 3.02
3804 4132 2.735762 GCCCGTCTTACACTTCTGCTAG 60.736 54.545 0.00 0.00 0.00 3.42
3805 4133 1.203994 GCCCGTCTTACACTTCTGCTA 59.796 52.381 0.00 0.00 0.00 3.49
3806 4134 0.037232 GCCCGTCTTACACTTCTGCT 60.037 55.000 0.00 0.00 0.00 4.24
3807 4135 0.037232 AGCCCGTCTTACACTTCTGC 60.037 55.000 0.00 0.00 0.00 4.26
3808 4136 2.457366 AAGCCCGTCTTACACTTCTG 57.543 50.000 0.00 0.00 32.10 3.02
3847 4182 3.287222 TCTAAACTTGTGGCTGCACTTT 58.713 40.909 0.50 0.00 0.00 2.66
3856 4191 4.470602 ACCCTCCTTTTCTAAACTTGTGG 58.529 43.478 0.00 0.00 0.00 4.17
3859 4194 6.978659 GTGAAAACCCTCCTTTTCTAAACTTG 59.021 38.462 6.09 0.00 39.78 3.16
3937 4279 1.602311 ACAGCAGACCAGCTTTCAAG 58.398 50.000 0.00 0.00 43.70 3.02
4003 4393 2.872245 CACACGTTGCCCTTCATATAGG 59.128 50.000 0.00 0.00 34.92 2.57
4101 4493 3.352648 CCTCTTTATTTCGGGGCTTTCA 58.647 45.455 0.00 0.00 0.00 2.69
4110 4502 1.737793 ACAAGGCGCCTCTTTATTTCG 59.262 47.619 32.93 11.83 0.00 3.46
4165 4558 2.450609 TTTGGCTCCGACACTTAGTC 57.549 50.000 0.00 0.00 44.02 2.59
4167 4560 1.464997 GCTTTTGGCTCCGACACTTAG 59.535 52.381 0.00 0.00 38.06 2.18
4168 4561 1.519408 GCTTTTGGCTCCGACACTTA 58.481 50.000 0.00 0.00 38.06 2.24
4223 4616 4.278170 ACCGCTTCAAAATCACTGAAATCA 59.722 37.500 0.00 0.00 32.57 2.57
4301 4694 5.953183 TCATGAATCAAACAAGGTACATGC 58.047 37.500 0.00 0.00 35.41 4.06
4314 4707 3.760151 CCAGGCTTCTGTTCATGAATCAA 59.240 43.478 12.12 4.19 36.81 2.57
4316 4709 2.098770 GCCAGGCTTCTGTTCATGAATC 59.901 50.000 12.12 6.28 36.81 2.52
4335 4728 2.626840 GTGAGAACTTCTGATCTGGCC 58.373 52.381 0.00 0.00 0.00 5.36
4337 4730 3.369261 CCTGGTGAGAACTTCTGATCTGG 60.369 52.174 0.00 0.00 0.00 3.86
4345 4738 1.016653 GCGCTCCTGGTGAGAACTTC 61.017 60.000 0.00 0.00 44.42 3.01
4366 4759 8.500773 CCTTGTACGTTTTAGTTGATGTAACAT 58.499 33.333 0.00 0.00 41.88 2.71
4398 4791 2.296480 CGAGCGTTCGCCAGCTATC 61.296 63.158 9.17 3.04 44.69 2.08
4413 4806 3.473647 TCATCCCCTGCTGGCGAG 61.474 66.667 3.63 0.00 0.00 5.03
4447 4840 3.473647 TCATCCCCTGCTGGCGAG 61.474 66.667 3.63 0.00 0.00 5.03
4448 4841 3.785859 GTCATCCCCTGCTGGCGA 61.786 66.667 3.63 1.12 0.00 5.54
4449 4842 2.898920 AATGTCATCCCCTGCTGGCG 62.899 60.000 3.63 0.00 0.00 5.69
4450 4843 0.685458 AAATGTCATCCCCTGCTGGC 60.685 55.000 3.63 0.00 0.00 4.85
4451 4844 1.108776 CAAATGTCATCCCCTGCTGG 58.891 55.000 1.89 1.89 0.00 4.85
4452 4845 0.458669 GCAAATGTCATCCCCTGCTG 59.541 55.000 0.00 0.00 0.00 4.41
4453 4846 1.033746 CGCAAATGTCATCCCCTGCT 61.034 55.000 7.26 0.00 0.00 4.24
4454 4847 1.031571 TCGCAAATGTCATCCCCTGC 61.032 55.000 0.00 0.00 0.00 4.85
4455 4848 1.133025 GTTCGCAAATGTCATCCCCTG 59.867 52.381 0.00 0.00 0.00 4.45
4456 4849 1.463674 GTTCGCAAATGTCATCCCCT 58.536 50.000 0.00 0.00 0.00 4.79
4457 4850 0.098728 CGTTCGCAAATGTCATCCCC 59.901 55.000 0.00 0.00 0.00 4.81
4458 4851 1.083489 TCGTTCGCAAATGTCATCCC 58.917 50.000 0.00 0.00 0.00 3.85
4459 4852 3.405170 AATCGTTCGCAAATGTCATCC 57.595 42.857 0.00 0.00 0.00 3.51
4460 4853 3.543494 CCAAATCGTTCGCAAATGTCATC 59.457 43.478 0.00 0.00 0.00 2.92
4461 4854 3.190327 TCCAAATCGTTCGCAAATGTCAT 59.810 39.130 0.00 0.00 0.00 3.06
4462 4855 2.550180 TCCAAATCGTTCGCAAATGTCA 59.450 40.909 0.00 0.00 0.00 3.58
4463 4856 3.196007 TCCAAATCGTTCGCAAATGTC 57.804 42.857 0.00 0.00 0.00 3.06
4464 4857 3.500982 CATCCAAATCGTTCGCAAATGT 58.499 40.909 0.00 0.00 0.00 2.71
4465 4858 2.853594 CCATCCAAATCGTTCGCAAATG 59.146 45.455 0.00 0.00 0.00 2.32
4466 4859 2.735126 GCCATCCAAATCGTTCGCAAAT 60.735 45.455 0.00 0.00 0.00 2.32
4467 4860 1.402194 GCCATCCAAATCGTTCGCAAA 60.402 47.619 0.00 0.00 0.00 3.68
4468 4861 0.170116 GCCATCCAAATCGTTCGCAA 59.830 50.000 0.00 0.00 0.00 4.85
4469 4862 0.957888 TGCCATCCAAATCGTTCGCA 60.958 50.000 0.00 0.00 0.00 5.10
4470 4863 0.248215 CTGCCATCCAAATCGTTCGC 60.248 55.000 0.00 0.00 0.00 4.70
4471 4864 1.086696 ACTGCCATCCAAATCGTTCG 58.913 50.000 0.00 0.00 0.00 3.95
4472 4865 3.575965 AAACTGCCATCCAAATCGTTC 57.424 42.857 0.00 0.00 0.00 3.95
4473 4866 4.522789 ACTAAAACTGCCATCCAAATCGTT 59.477 37.500 0.00 0.00 0.00 3.85
4474 4867 4.079253 ACTAAAACTGCCATCCAAATCGT 58.921 39.130 0.00 0.00 0.00 3.73
4475 4868 4.701956 ACTAAAACTGCCATCCAAATCG 57.298 40.909 0.00 0.00 0.00 3.34
4476 4869 5.047377 TCCAACTAAAACTGCCATCCAAATC 60.047 40.000 0.00 0.00 0.00 2.17
4477 4870 4.837860 TCCAACTAAAACTGCCATCCAAAT 59.162 37.500 0.00 0.00 0.00 2.32
4478 4871 4.219115 TCCAACTAAAACTGCCATCCAAA 58.781 39.130 0.00 0.00 0.00 3.28
4479 4872 3.826157 CTCCAACTAAAACTGCCATCCAA 59.174 43.478 0.00 0.00 0.00 3.53
4480 4873 3.181434 ACTCCAACTAAAACTGCCATCCA 60.181 43.478 0.00 0.00 0.00 3.41
4481 4874 3.421844 ACTCCAACTAAAACTGCCATCC 58.578 45.455 0.00 0.00 0.00 3.51
4482 4875 6.555315 CATTACTCCAACTAAAACTGCCATC 58.445 40.000 0.00 0.00 0.00 3.51
4483 4876 5.105756 GCATTACTCCAACTAAAACTGCCAT 60.106 40.000 0.00 0.00 0.00 4.40
4484 4877 4.217550 GCATTACTCCAACTAAAACTGCCA 59.782 41.667 0.00 0.00 0.00 4.92
4485 4878 4.459337 AGCATTACTCCAACTAAAACTGCC 59.541 41.667 0.00 0.00 0.00 4.85
4486 4879 5.629079 AGCATTACTCCAACTAAAACTGC 57.371 39.130 0.00 0.00 0.00 4.40
4487 4880 7.519002 GTGTAGCATTACTCCAACTAAAACTG 58.481 38.462 0.00 0.00 0.00 3.16
4488 4881 6.367969 CGTGTAGCATTACTCCAACTAAAACT 59.632 38.462 0.00 0.00 0.00 2.66
4489 4882 6.146673 ACGTGTAGCATTACTCCAACTAAAAC 59.853 38.462 0.00 0.00 0.00 2.43
4490 4883 6.225318 ACGTGTAGCATTACTCCAACTAAAA 58.775 36.000 0.00 0.00 0.00 1.52
4491 4884 5.786311 ACGTGTAGCATTACTCCAACTAAA 58.214 37.500 0.00 0.00 0.00 1.85
4492 4885 5.395682 ACGTGTAGCATTACTCCAACTAA 57.604 39.130 0.00 0.00 0.00 2.24
4493 4886 6.704289 ATACGTGTAGCATTACTCCAACTA 57.296 37.500 0.00 0.00 0.00 2.24
4494 4887 3.955650 ACGTGTAGCATTACTCCAACT 57.044 42.857 0.00 0.00 0.00 3.16
4495 4888 7.514125 CGTTTATACGTGTAGCATTACTCCAAC 60.514 40.741 0.00 0.00 42.72 3.77
4496 4889 6.473131 CGTTTATACGTGTAGCATTACTCCAA 59.527 38.462 0.00 0.00 42.72 3.53
4497 4890 5.972973 CGTTTATACGTGTAGCATTACTCCA 59.027 40.000 0.00 0.00 42.72 3.86
4498 4891 6.430048 CGTTTATACGTGTAGCATTACTCC 57.570 41.667 0.00 0.00 42.72 3.85
4517 4910 9.131416 CTTTTTGTAAAACCTTGTAACTCGTTT 57.869 29.630 0.00 0.00 0.00 3.60
4518 4911 7.756272 CCTTTTTGTAAAACCTTGTAACTCGTT 59.244 33.333 0.00 0.00 0.00 3.85
4519 4912 7.252708 CCTTTTTGTAAAACCTTGTAACTCGT 58.747 34.615 0.00 0.00 0.00 4.18
4520 4913 6.693978 CCCTTTTTGTAAAACCTTGTAACTCG 59.306 38.462 0.00 0.00 0.00 4.18
4521 4914 7.549839 ACCCTTTTTGTAAAACCTTGTAACTC 58.450 34.615 0.00 0.00 0.00 3.01
4522 4915 7.484993 ACCCTTTTTGTAAAACCTTGTAACT 57.515 32.000 0.00 0.00 0.00 2.24
4523 4916 9.650539 TTAACCCTTTTTGTAAAACCTTGTAAC 57.349 29.630 0.00 0.00 0.00 2.50
4526 4919 9.742144 AAATTAACCCTTTTTGTAAAACCTTGT 57.258 25.926 0.00 0.00 0.00 3.16
4527 4920 9.995957 CAAATTAACCCTTTTTGTAAAACCTTG 57.004 29.630 0.00 0.00 0.00 3.61
4528 4921 9.961264 TCAAATTAACCCTTTTTGTAAAACCTT 57.039 25.926 0.00 0.00 33.24 3.50
4533 4926 9.907229 ACCAATCAAATTAACCCTTTTTGTAAA 57.093 25.926 0.00 0.00 33.24 2.01
4534 4927 9.549078 GACCAATCAAATTAACCCTTTTTGTAA 57.451 29.630 0.00 0.00 33.24 2.41
4535 4928 8.705594 TGACCAATCAAATTAACCCTTTTTGTA 58.294 29.630 0.00 0.00 33.24 2.41
4536 4929 7.569240 TGACCAATCAAATTAACCCTTTTTGT 58.431 30.769 0.00 0.00 33.24 2.83
4537 4930 8.443953 TTGACCAATCAAATTAACCCTTTTTG 57.556 30.769 0.00 0.00 41.99 2.44
4552 4945 3.395607 CCTCCCCATCTATTGACCAATCA 59.604 47.826 0.00 0.00 32.50 2.57
4553 4946 3.812167 GCCTCCCCATCTATTGACCAATC 60.812 52.174 0.00 0.00 32.50 2.67
4554 4947 2.108952 GCCTCCCCATCTATTGACCAAT 59.891 50.000 0.64 0.64 34.93 3.16
4555 4948 1.494721 GCCTCCCCATCTATTGACCAA 59.505 52.381 0.00 0.00 0.00 3.67
4556 4949 1.140312 GCCTCCCCATCTATTGACCA 58.860 55.000 0.00 0.00 0.00 4.02
4557 4950 0.035458 CGCCTCCCCATCTATTGACC 59.965 60.000 0.00 0.00 0.00 4.02
4558 4951 0.035458 CCGCCTCCCCATCTATTGAC 59.965 60.000 0.00 0.00 0.00 3.18
4559 4952 1.768684 GCCGCCTCCCCATCTATTGA 61.769 60.000 0.00 0.00 0.00 2.57
4560 4953 1.302832 GCCGCCTCCCCATCTATTG 60.303 63.158 0.00 0.00 0.00 1.90
4561 4954 2.529744 GGCCGCCTCCCCATCTATT 61.530 63.158 0.71 0.00 0.00 1.73
4562 4955 2.930562 GGCCGCCTCCCCATCTAT 60.931 66.667 0.71 0.00 0.00 1.98
4575 4968 2.588029 ATTTTCAGGGGGATGGGCCG 62.588 60.000 0.00 0.00 37.63 6.13
4576 4969 0.760567 GATTTTCAGGGGGATGGGCC 60.761 60.000 0.00 0.00 0.00 5.80
4577 4970 0.032217 TGATTTTCAGGGGGATGGGC 60.032 55.000 0.00 0.00 0.00 5.36
4578 4971 2.077687 CTGATTTTCAGGGGGATGGG 57.922 55.000 0.00 0.00 40.71 4.00
4598 4991 0.251787 ATCACAAACTTGCCTCCCCC 60.252 55.000 0.00 0.00 0.00 5.40
4599 4992 1.273327 CAATCACAAACTTGCCTCCCC 59.727 52.381 0.00 0.00 0.00 4.81
4600 4993 1.273327 CCAATCACAAACTTGCCTCCC 59.727 52.381 0.00 0.00 0.00 4.30
4601 4994 1.963515 ACCAATCACAAACTTGCCTCC 59.036 47.619 0.00 0.00 0.00 4.30
4602 4995 3.733443 AACCAATCACAAACTTGCCTC 57.267 42.857 0.00 0.00 0.00 4.70
4603 4996 4.215109 ACTAACCAATCACAAACTTGCCT 58.785 39.130 0.00 0.00 0.00 4.75
4604 4997 4.584327 ACTAACCAATCACAAACTTGCC 57.416 40.909 0.00 0.00 0.00 4.52
4605 4998 6.554334 TCTACTAACCAATCACAAACTTGC 57.446 37.500 0.00 0.00 0.00 4.01
4606 4999 7.390440 TCCATCTACTAACCAATCACAAACTTG 59.610 37.037 0.00 0.00 0.00 3.16
4607 5000 7.458397 TCCATCTACTAACCAATCACAAACTT 58.542 34.615 0.00 0.00 0.00 2.66
4608 5001 7.016153 TCCATCTACTAACCAATCACAAACT 57.984 36.000 0.00 0.00 0.00 2.66
4609 5002 7.681939 TTCCATCTACTAACCAATCACAAAC 57.318 36.000 0.00 0.00 0.00 2.93
4610 5003 8.698973 TTTTCCATCTACTAACCAATCACAAA 57.301 30.769 0.00 0.00 0.00 2.83
4611 5004 8.698973 TTTTTCCATCTACTAACCAATCACAA 57.301 30.769 0.00 0.00 0.00 3.33
4633 5026 7.518370 CGCAATTATACGCTGACTAGGATTTTT 60.518 37.037 0.00 0.00 0.00 1.94
4634 5027 6.073765 CGCAATTATACGCTGACTAGGATTTT 60.074 38.462 0.00 0.00 0.00 1.82
4635 5028 5.405571 CGCAATTATACGCTGACTAGGATTT 59.594 40.000 0.00 0.00 0.00 2.17
4636 5029 4.923871 CGCAATTATACGCTGACTAGGATT 59.076 41.667 0.00 0.00 0.00 3.01
4637 5030 4.022242 ACGCAATTATACGCTGACTAGGAT 60.022 41.667 0.00 0.00 0.00 3.24
4638 5031 3.317149 ACGCAATTATACGCTGACTAGGA 59.683 43.478 0.00 0.00 0.00 2.94
4639 5032 3.425525 CACGCAATTATACGCTGACTAGG 59.574 47.826 0.00 0.00 0.00 3.02
4640 5033 4.042398 ACACGCAATTATACGCTGACTAG 58.958 43.478 0.00 0.00 0.00 2.57
4641 5034 4.036567 ACACGCAATTATACGCTGACTA 57.963 40.909 0.00 0.00 0.00 2.59
4642 5035 2.888594 ACACGCAATTATACGCTGACT 58.111 42.857 0.00 0.00 0.00 3.41
4643 5036 4.266976 AGTTACACGCAATTATACGCTGAC 59.733 41.667 0.00 0.00 0.00 3.51
4644 5037 4.426416 AGTTACACGCAATTATACGCTGA 58.574 39.130 0.00 0.00 0.00 4.26
4645 5038 4.772046 AGTTACACGCAATTATACGCTG 57.228 40.909 0.00 0.00 0.00 5.18
4646 5039 5.789710 AAAGTTACACGCAATTATACGCT 57.210 34.783 0.00 0.00 0.00 5.07
4647 5040 6.303733 ACAAAAAGTTACACGCAATTATACGC 59.696 34.615 0.00 0.00 0.00 4.42
4648 5041 7.769719 ACAAAAAGTTACACGCAATTATACG 57.230 32.000 0.00 0.00 0.00 3.06
4651 5044 9.685828 AACATACAAAAAGTTACACGCAATTAT 57.314 25.926 0.00 0.00 0.00 1.28
4652 5045 9.517609 AAACATACAAAAAGTTACACGCAATTA 57.482 25.926 0.00 0.00 0.00 1.40
4653 5046 7.995463 AACATACAAAAAGTTACACGCAATT 57.005 28.000 0.00 0.00 0.00 2.32
4654 5047 7.995463 AAACATACAAAAAGTTACACGCAAT 57.005 28.000 0.00 0.00 0.00 3.56
4655 5048 7.166142 GCTAAACATACAAAAAGTTACACGCAA 59.834 33.333 0.00 0.00 0.00 4.85
4656 5049 6.633634 GCTAAACATACAAAAAGTTACACGCA 59.366 34.615 0.00 0.00 0.00 5.24
4657 5050 6.633634 TGCTAAACATACAAAAAGTTACACGC 59.366 34.615 0.00 0.00 0.00 5.34
4658 5051 8.722342 ATGCTAAACATACAAAAAGTTACACG 57.278 30.769 0.00 0.00 37.17 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.