Multiple sequence alignment - TraesCS5A01G398100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G398100 chr5A 100.000 4829 0 0 1 4829 592209258 592204430 0.000000e+00 8918
1 TraesCS5A01G398100 chr5A 86.423 383 34 8 3541 3915 592132568 592132196 2.090000e-108 403
2 TraesCS5A01G398100 chr5D 94.970 2306 78 19 849 3143 472633058 472630780 0.000000e+00 3581
3 TraesCS5A01G398100 chr5D 91.041 1518 88 32 3139 4626 472630737 472629238 0.000000e+00 2006
4 TraesCS5A01G398100 chr5B 92.128 2477 106 36 720 3143 580079823 580077383 0.000000e+00 3411
5 TraesCS5A01G398100 chr5B 93.525 973 42 10 3138 4100 580077340 580076379 0.000000e+00 1428
6 TraesCS5A01G398100 chr5B 84.861 753 65 19 5 713 580080692 580079945 0.000000e+00 713
7 TraesCS5A01G398100 chr5B 97.525 202 5 0 4201 4402 580076380 580076179 3.580000e-91 346


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G398100 chr5A 592204430 592209258 4828 True 8918.0 8918 100.00000 1 4829 1 chr5A.!!$R2 4828
1 TraesCS5A01G398100 chr5D 472629238 472633058 3820 True 2793.5 3581 93.00550 849 4626 2 chr5D.!!$R1 3777
2 TraesCS5A01G398100 chr5B 580076179 580080692 4513 True 1474.5 3411 92.00975 5 4402 4 chr5B.!!$R1 4397

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 500 0.547553 AAAACGGTGGTGGTGGTACT 59.452 50.0 0.00 0.00 0.00 2.73 F
1035 1213 0.179124 GAGCACAGAGTGGATCCGTC 60.179 60.0 7.39 6.54 33.64 4.79 F
1068 1246 0.603569 GAACCAGAGCAAGAGACCGA 59.396 55.0 0.00 0.00 0.00 4.69 F
2187 2381 0.949105 AGCTTTCGCCACAAGTACCG 60.949 55.0 0.00 0.00 36.60 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1604 1795 2.501723 TGCTGGAGATAACAGAGGAACC 59.498 50.000 0.0 0.0 38.20 3.62 R
2406 2607 5.402398 GTTCTTTGCCTAATAAAGCCACAG 58.598 41.667 0.0 0.0 35.61 3.66 R
3060 3285 4.442706 CAGTAGATCATACCCAAAAGCGT 58.557 43.478 0.0 0.0 0.00 5.07 R
4114 4421 0.163788 CTGACAAGGCAGCGTTAACG 59.836 55.000 23.4 23.4 43.27 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.141756 ACTGGATCAAACCATTTGCACAAA 60.142 37.500 0.00 0.00 40.43 2.83
29 30 2.932614 TCAAACCATTTGCACAAAACCG 59.067 40.909 0.00 0.00 40.43 4.44
42 43 5.009110 TGCACAAAACCGATCTAAACATCAA 59.991 36.000 0.00 0.00 0.00 2.57
45 46 6.359617 CACAAAACCGATCTAAACATCAACAC 59.640 38.462 0.00 0.00 0.00 3.32
55 58 2.798976 ACATCAACACCAATGCACAC 57.201 45.000 0.00 0.00 0.00 3.82
138 143 5.637810 TGTTTCGTCTGATTCAAGGACATAC 59.362 40.000 6.80 2.85 0.00 2.39
147 152 8.762645 TCTGATTCAAGGACATACTACAAATCT 58.237 33.333 0.00 0.00 0.00 2.40
178 183 7.910683 GCTAAAGAACTAATATGCCAGTTTCAC 59.089 37.037 0.00 0.00 35.17 3.18
179 184 6.759497 AAGAACTAATATGCCAGTTTCACC 57.241 37.500 0.00 0.00 35.17 4.02
180 185 5.815581 AGAACTAATATGCCAGTTTCACCA 58.184 37.500 0.00 0.00 35.17 4.17
181 186 6.245408 AGAACTAATATGCCAGTTTCACCAA 58.755 36.000 0.00 0.00 35.17 3.67
182 187 6.891908 AGAACTAATATGCCAGTTTCACCAAT 59.108 34.615 0.00 0.00 35.17 3.16
211 216 9.276590 CTCTAACATATGATCAAAGTGGCAATA 57.723 33.333 10.38 0.00 0.00 1.90
221 226 9.558396 TGATCAAAGTGGCAATAAAAAGAAAAT 57.442 25.926 0.00 0.00 0.00 1.82
224 229 8.835439 TCAAAGTGGCAATAAAAAGAAAATTCC 58.165 29.630 0.00 0.00 0.00 3.01
261 267 4.399303 GGAAAAATCCATGTTCAGATCGGT 59.601 41.667 0.00 0.00 0.00 4.69
348 363 6.704493 ACTGAATATCGTGCGTAATAATGGTT 59.296 34.615 0.00 0.00 0.00 3.67
360 375 7.388224 TGCGTAATAATGGTTGTTGAGTTCTTA 59.612 33.333 0.00 0.00 0.00 2.10
361 376 8.231837 GCGTAATAATGGTTGTTGAGTTCTTAA 58.768 33.333 0.00 0.00 0.00 1.85
410 426 2.356135 ACATCACTTCACATTACCCGC 58.644 47.619 0.00 0.00 0.00 6.13
413 429 1.621317 TCACTTCACATTACCCGCTGA 59.379 47.619 0.00 0.00 0.00 4.26
415 431 2.352651 CACTTCACATTACCCGCTGATG 59.647 50.000 0.00 0.00 0.00 3.07
427 443 2.159338 CCCGCTGATGAAAGAACCAATG 60.159 50.000 0.00 0.00 0.00 2.82
432 448 4.022068 GCTGATGAAAGAACCAATGGTTGA 60.022 41.667 23.90 1.27 46.95 3.18
436 452 5.212532 TGAAAGAACCAATGGTTGAATGG 57.787 39.130 23.90 0.00 46.95 3.16
444 460 5.293560 ACCAATGGTTGAATGGTTAAAACG 58.706 37.500 0.00 0.00 44.92 3.60
445 461 4.688413 CCAATGGTTGAATGGTTAAAACGG 59.312 41.667 0.00 0.00 0.00 4.44
446 462 5.293560 CAATGGTTGAATGGTTAAAACGGT 58.706 37.500 0.00 0.00 0.00 4.83
447 463 4.308899 TGGTTGAATGGTTAAAACGGTG 57.691 40.909 0.00 0.00 0.00 4.94
453 495 1.390565 TGGTTAAAACGGTGGTGGTG 58.609 50.000 0.00 0.00 0.00 4.17
457 499 2.252976 TAAAACGGTGGTGGTGGTAC 57.747 50.000 0.00 0.00 0.00 3.34
458 500 0.547553 AAAACGGTGGTGGTGGTACT 59.452 50.000 0.00 0.00 0.00 2.73
468 510 1.066358 GTGGTGGTACTCTAAGCCCAC 60.066 57.143 0.00 0.00 45.29 4.61
489 531 3.244911 ACCAAAGATCAAACCTCGGTCAT 60.245 43.478 0.00 0.00 0.00 3.06
509 551 4.701651 TCATCGATTTTGAAGCTCCACAAT 59.298 37.500 0.00 0.00 0.00 2.71
512 554 4.082787 TCGATTTTGAAGCTCCACAATTCC 60.083 41.667 0.00 0.00 0.00 3.01
530 572 6.497259 ACAATTCCAACCTAGTCTTCAGTAGA 59.503 38.462 0.00 0.00 0.00 2.59
545 587 6.264518 TCTTCAGTAGACATTGTGTGAGTGTA 59.735 38.462 0.00 0.00 0.00 2.90
547 589 6.389906 TCAGTAGACATTGTGTGAGTGTATG 58.610 40.000 0.00 0.00 0.00 2.39
550 592 7.171508 CAGTAGACATTGTGTGAGTGTATGTTT 59.828 37.037 0.00 0.00 30.14 2.83
560 602 1.953686 AGTGTATGTTTGTGGTGGTGC 59.046 47.619 0.00 0.00 0.00 5.01
561 603 1.678627 GTGTATGTTTGTGGTGGTGCA 59.321 47.619 0.00 0.00 0.00 4.57
563 605 2.961741 TGTATGTTTGTGGTGGTGCAAT 59.038 40.909 0.00 0.00 0.00 3.56
568 610 3.120041 GTTTGTGGTGGTGCAATTGTAC 58.880 45.455 17.37 17.37 0.00 2.90
576 618 2.004733 GGTGCAATTGTACGGGTCTAC 58.995 52.381 18.67 1.46 0.00 2.59
585 627 9.426837 GCAATTGTACGGGTCTACATTATAATA 57.573 33.333 7.40 0.00 0.00 0.98
619 661 5.816919 ACACAAACATCCTAAGTGAAAACG 58.183 37.500 0.00 0.00 34.47 3.60
646 691 5.874810 TGATATGCCTTTATTGCTATCCGAC 59.125 40.000 0.00 0.00 0.00 4.79
653 698 2.083835 ATTGCTATCCGACGGACCCG 62.084 60.000 21.02 11.46 46.03 5.28
655 700 3.028969 CTATCCGACGGACCCGAC 58.971 66.667 21.02 8.18 42.83 4.79
659 704 2.292794 ATCCGACGGACCCGACAATG 62.293 60.000 21.02 1.13 42.83 2.82
662 707 1.804326 GACGGACCCGACAATGACG 60.804 63.158 16.07 0.00 42.83 4.35
680 725 2.813908 CTACACGTGGGCGCCTTC 60.814 66.667 28.56 18.14 42.83 3.46
686 731 2.644992 GTGGGCGCCTTCTTGTTG 59.355 61.111 28.56 0.00 0.00 3.33
689 734 1.285950 GGGCGCCTTCTTGTTGAAC 59.714 57.895 28.56 0.00 0.00 3.18
705 750 6.397831 TGTTGAACGTATTATCTTTGTCCG 57.602 37.500 0.00 0.00 0.00 4.79
713 758 6.596497 ACGTATTATCTTTGTCCGGATGTTTT 59.404 34.615 7.81 0.00 0.00 2.43
715 760 8.273557 CGTATTATCTTTGTCCGGATGTTTTAG 58.726 37.037 7.81 0.00 0.00 1.85
718 878 4.320870 TCTTTGTCCGGATGTTTTAGACC 58.679 43.478 7.81 0.00 0.00 3.85
724 884 6.110707 TGTCCGGATGTTTTAGACCTAATTC 58.889 40.000 7.81 0.00 0.00 2.17
729 889 6.645415 CGGATGTTTTAGACCTAATTCGCTAT 59.355 38.462 0.00 0.00 0.00 2.97
737 897 4.215827 AGACCTAATTCGCTATACCTGACG 59.784 45.833 0.00 0.00 0.00 4.35
739 899 4.023365 ACCTAATTCGCTATACCTGACGTC 60.023 45.833 9.11 9.11 0.00 4.34
741 901 3.627732 ATTCGCTATACCTGACGTCTG 57.372 47.619 17.92 16.32 0.00 3.51
742 902 2.320745 TCGCTATACCTGACGTCTGA 57.679 50.000 22.46 5.22 0.00 3.27
744 904 2.353889 TCGCTATACCTGACGTCTGAAC 59.646 50.000 22.46 5.43 0.00 3.18
761 922 4.921515 TCTGAACGAAACTTTATCCTGACG 59.078 41.667 0.00 0.00 0.00 4.35
786 947 9.619316 CGTTTATAAAATGGACTTGTCATGAAA 57.381 29.630 0.00 0.00 0.00 2.69
794 955 8.723942 AATGGACTTGTCATGAAACTATAGTC 57.276 34.615 5.70 1.69 0.00 2.59
796 957 6.071560 TGGACTTGTCATGAAACTATAGTCGT 60.072 38.462 5.70 0.00 33.38 4.34
797 958 6.253727 GGACTTGTCATGAAACTATAGTCGTG 59.746 42.308 5.70 6.65 33.38 4.35
801 963 7.576750 TGTCATGAAACTATAGTCGTGTTTC 57.423 36.000 5.70 6.58 45.51 2.78
808 970 9.701098 TGAAACTATAGTCGTGTTTCTGTATTT 57.299 29.630 5.70 0.00 45.51 1.40
816 978 7.758495 AGTCGTGTTTCTGTATTTCTTTTGTT 58.242 30.769 0.00 0.00 0.00 2.83
819 981 9.068008 TCGTGTTTCTGTATTTCTTTTGTTTTC 57.932 29.630 0.00 0.00 0.00 2.29
820 982 8.042119 CGTGTTTCTGTATTTCTTTTGTTTTCG 58.958 33.333 0.00 0.00 0.00 3.46
821 983 9.068008 GTGTTTCTGTATTTCTTTTGTTTTCGA 57.932 29.630 0.00 0.00 0.00 3.71
822 984 9.796120 TGTTTCTGTATTTCTTTTGTTTTCGAT 57.204 25.926 0.00 0.00 0.00 3.59
978 1147 6.587206 TCACAGCCATCAATGTTTAATCAA 57.413 33.333 0.00 0.00 0.00 2.57
1035 1213 0.179124 GAGCACAGAGTGGATCCGTC 60.179 60.000 7.39 6.54 33.64 4.79
1068 1246 0.603569 GAACCAGAGCAAGAGACCGA 59.396 55.000 0.00 0.00 0.00 4.69
1299 1483 3.466836 TCCATTTGATTAGCGCAGTAGG 58.533 45.455 11.47 0.00 0.00 3.18
1399 1589 3.713826 TTCCTATTTGTCCTGTGTCCC 57.286 47.619 0.00 0.00 0.00 4.46
1407 1597 1.272536 TGTCCTGTGTCCCTACTCCTC 60.273 57.143 0.00 0.00 0.00 3.71
1513 1703 8.165239 AGTTTGTTATGCTTATGTTTGTCAGA 57.835 30.769 0.00 0.00 0.00 3.27
1533 1723 5.471116 TCAGACATGGAAGTTGAATCAGTTG 59.529 40.000 0.00 0.00 0.00 3.16
1534 1724 5.240183 CAGACATGGAAGTTGAATCAGTTGT 59.760 40.000 0.00 0.00 0.00 3.32
1535 1725 5.240183 AGACATGGAAGTTGAATCAGTTGTG 59.760 40.000 0.00 0.00 0.00 3.33
1584 1775 3.547249 CTGCCGCACTGCAAACTGG 62.547 63.158 1.11 0.00 41.51 4.00
1600 1791 5.403466 GCAAACTGGAACATGAAATCTGAAC 59.597 40.000 0.00 0.00 38.20 3.18
1604 1795 5.184479 ACTGGAACATGAAATCTGAACCATG 59.816 40.000 0.00 12.57 41.40 3.66
1630 1821 4.100653 TCCTCTGTTATCTCCAGCAATGAG 59.899 45.833 0.00 0.00 0.00 2.90
1685 1876 1.065491 ACCCGTCATTCTATTGCTGCA 60.065 47.619 0.00 0.00 0.00 4.41
1738 1929 9.672086 TCTTACTGGTTTTGATTTATTTGTTCG 57.328 29.630 0.00 0.00 0.00 3.95
1780 1971 9.775854 CATTCTTCACTAATATTGGATCTGTCT 57.224 33.333 5.74 0.00 0.00 3.41
2056 2247 7.095481 GCAAAATGGAAATTCAGAAGGTTCTTC 60.095 37.037 8.55 0.00 34.74 2.87
2187 2381 0.949105 AGCTTTCGCCACAAGTACCG 60.949 55.000 0.00 0.00 36.60 4.02
2192 2386 2.369629 CGCCACAAGTACCGACACG 61.370 63.158 0.00 0.00 0.00 4.49
2313 2509 5.945784 AGGTCAGCTGTGCATTTCTTATTTA 59.054 36.000 14.67 0.00 0.00 1.40
2361 2562 4.018050 AGTCTCTGCCAAAAGGGTGATTAT 60.018 41.667 0.00 0.00 39.65 1.28
2370 2571 6.423182 CCAAAAGGGTGATTATGTAGGAAGA 58.577 40.000 0.00 0.00 0.00 2.87
2439 2640 2.234143 AGGCAAAGAACCAAGAGAAGC 58.766 47.619 0.00 0.00 0.00 3.86
2567 2768 1.755380 AGACGCTGTATGGACCTTACC 59.245 52.381 13.50 0.76 0.00 2.85
2645 2846 3.489355 TCGTACTGGTAGGTTTCTGACA 58.511 45.455 0.00 0.00 0.00 3.58
2675 2876 3.414549 TCTTTTCCAGACGCAAACAAC 57.585 42.857 0.00 0.00 0.00 3.32
2776 2977 7.565680 ACCAATTCTTTTCTACGATGAGGTAT 58.434 34.615 0.00 0.00 0.00 2.73
2836 3037 4.839121 TGGTTTACCCTGACATGACATAC 58.161 43.478 0.00 0.00 34.29 2.39
3060 3285 2.178912 CCGGTTGGTTTCTGCTCTTA 57.821 50.000 0.00 0.00 0.00 2.10
3098 3323 0.881118 ACTGCCCTGCATTTTACACG 59.119 50.000 0.00 0.00 38.13 4.49
3190 3463 5.412594 CACAAAGAATGGCAAGAGCTTAGTA 59.587 40.000 0.00 0.00 41.70 1.82
3248 3521 3.388676 TCTCAAACAAACCGGGTCTAAGA 59.611 43.478 6.32 0.00 0.00 2.10
3302 3576 6.911308 CCTTTTGGAGGGGATTAGAATTCTA 58.089 40.000 11.24 11.24 44.07 2.10
3339 3613 2.985847 GACACCCACCAAGCTGGC 60.986 66.667 0.00 0.00 42.67 4.85
3356 3630 1.068921 GCGTGGTTTTGGGCACAAT 59.931 52.632 0.06 0.00 36.29 2.71
3549 3823 5.197451 TGTTCTTTTGGAAGTAAGGAAGCA 58.803 37.500 0.00 0.00 34.23 3.91
3552 3826 6.144078 TCTTTTGGAAGTAAGGAAGCAAAC 57.856 37.500 0.00 0.00 34.41 2.93
3573 3847 1.214367 CGGTTGTACTGCGTGAACTT 58.786 50.000 0.00 0.00 0.00 2.66
3582 3856 0.179059 TGCGTGAACTTTGCTGGAGA 60.179 50.000 0.00 0.00 0.00 3.71
3623 3897 1.001815 GTCTGCGGTATGCTCTCTCTC 60.002 57.143 0.00 0.00 46.63 3.20
3624 3898 0.313672 CTGCGGTATGCTCTCTCTCC 59.686 60.000 0.00 0.00 46.63 3.71
3660 3954 8.062065 TGAACAAGTACTTTCCTTTGAACAAT 57.938 30.769 5.07 0.00 0.00 2.71
3684 3978 2.987413 CTGCAAAATGTTGGAGCGTA 57.013 45.000 3.98 0.00 44.84 4.42
3834 4128 3.844211 TGAAGATACCCAGTTAACCTGCT 59.156 43.478 0.88 0.00 40.06 4.24
3870 4172 2.930040 GTGTGTTCGGTACATCCATGAG 59.070 50.000 0.00 0.00 39.39 2.90
3960 4263 1.580845 CTTGAAGCCCTTGCGACTGG 61.581 60.000 0.00 0.00 44.33 4.00
4002 4309 4.659172 CCGGGCTGGGCTTGTGAA 62.659 66.667 3.77 0.00 0.00 3.18
4003 4310 3.365265 CGGGCTGGGCTTGTGAAC 61.365 66.667 0.00 0.00 0.00 3.18
4004 4311 2.116125 GGGCTGGGCTTGTGAACT 59.884 61.111 0.00 0.00 0.00 3.01
4022 4329 6.929049 TGTGAACTTTGACAGATAAGAACGAT 59.071 34.615 0.00 0.00 0.00 3.73
4025 4332 4.631813 ACTTTGACAGATAAGAACGATGCC 59.368 41.667 0.00 0.00 0.00 4.40
4026 4333 3.885724 TGACAGATAAGAACGATGCCA 57.114 42.857 0.00 0.00 0.00 4.92
4030 4337 3.055819 ACAGATAAGAACGATGCCACTGT 60.056 43.478 0.00 0.00 0.00 3.55
4037 4344 1.512926 ACGATGCCACTGTCAGTTTC 58.487 50.000 1.67 0.00 0.00 2.78
4102 4409 4.082125 AGTTCATTTTTCCATCTTCGCCT 58.918 39.130 0.00 0.00 0.00 5.52
4110 4417 6.677781 TTTTCCATCTTCGCCTATTTACTG 57.322 37.500 0.00 0.00 0.00 2.74
4114 4421 4.511826 CCATCTTCGCCTATTTACTGAACC 59.488 45.833 0.00 0.00 0.00 3.62
4138 4445 1.160329 ACGCTGCCTTGTCAGTTGTC 61.160 55.000 0.00 0.00 36.49 3.18
4142 4449 0.176910 TGCCTTGTCAGTTGTCACGA 59.823 50.000 0.00 0.00 0.00 4.35
4495 4808 1.984026 CCTGACCCAACCCAATGGC 60.984 63.158 0.00 0.00 39.26 4.40
4496 4809 2.282816 TGACCCAACCCAATGGCG 60.283 61.111 0.00 0.00 39.26 5.69
4497 4810 3.758931 GACCCAACCCAATGGCGC 61.759 66.667 0.00 0.00 39.26 6.53
4498 4811 4.299796 ACCCAACCCAATGGCGCT 62.300 61.111 7.64 0.00 39.26 5.92
4500 4813 1.680651 CCCAACCCAATGGCGCTTA 60.681 57.895 7.64 0.00 39.26 3.09
4535 4853 7.992180 ACAAAGAATCAACAACAGAAATGTC 57.008 32.000 0.00 0.00 0.00 3.06
4564 4882 1.363744 CGCACATCTTTGGACTCCTC 58.636 55.000 0.00 0.00 0.00 3.71
4569 4887 3.772025 CACATCTTTGGACTCCTCCTAGT 59.228 47.826 0.00 0.00 37.48 2.57
4574 4892 1.760192 TGGACTCCTCCTAGTTACGC 58.240 55.000 0.00 0.00 37.48 4.42
4583 4901 4.398988 TCCTCCTAGTTACGCGATTTTGTA 59.601 41.667 15.93 0.00 0.00 2.41
4626 4948 8.425577 ACTGTATGACGGAAATCATAAGAAAG 57.574 34.615 0.00 0.00 41.97 2.62
4627 4949 8.258007 ACTGTATGACGGAAATCATAAGAAAGA 58.742 33.333 0.00 0.00 41.97 2.52
4628 4950 9.098355 CTGTATGACGGAAATCATAAGAAAGAA 57.902 33.333 0.00 0.00 41.97 2.52
4629 4951 9.443323 TGTATGACGGAAATCATAAGAAAGAAA 57.557 29.630 0.00 0.00 41.97 2.52
4632 4954 9.793252 ATGACGGAAATCATAAGAAAGAAAATG 57.207 29.630 0.00 0.00 37.56 2.32
4633 4955 8.243426 TGACGGAAATCATAAGAAAGAAAATGG 58.757 33.333 0.00 0.00 0.00 3.16
4634 4956 7.547227 ACGGAAATCATAAGAAAGAAAATGGG 58.453 34.615 0.00 0.00 0.00 4.00
4635 4957 7.396055 ACGGAAATCATAAGAAAGAAAATGGGA 59.604 33.333 0.00 0.00 0.00 4.37
4636 4958 7.702348 CGGAAATCATAAGAAAGAAAATGGGAC 59.298 37.037 0.00 0.00 0.00 4.46
4658 4980 3.728076 GCATTGTGCATCATTGGAGAT 57.272 42.857 0.00 0.00 44.26 2.75
4659 4981 3.639538 GCATTGTGCATCATTGGAGATC 58.360 45.455 0.00 0.00 44.26 2.75
4660 4982 3.067601 GCATTGTGCATCATTGGAGATCA 59.932 43.478 0.00 0.00 44.26 2.92
4661 4983 4.440940 GCATTGTGCATCATTGGAGATCAA 60.441 41.667 0.00 0.00 44.26 2.57
4662 4984 4.707030 TTGTGCATCATTGGAGATCAAC 57.293 40.909 0.00 0.00 38.31 3.18
4663 4985 3.018856 TGTGCATCATTGGAGATCAACC 58.981 45.455 0.00 0.00 38.31 3.77
4664 4986 2.360165 GTGCATCATTGGAGATCAACCC 59.640 50.000 0.00 0.00 38.31 4.11
4665 4987 2.025131 TGCATCATTGGAGATCAACCCA 60.025 45.455 0.00 0.00 38.31 4.51
4666 4988 3.025978 GCATCATTGGAGATCAACCCAA 58.974 45.455 14.03 14.03 45.40 4.12
4667 4989 3.181483 GCATCATTGGAGATCAACCCAAC 60.181 47.826 13.97 1.65 44.29 3.77
4668 4990 2.710377 TCATTGGAGATCAACCCAACG 58.290 47.619 13.97 8.30 44.29 4.10
4669 4991 1.745087 CATTGGAGATCAACCCAACGG 59.255 52.381 13.97 7.93 44.29 4.44
4670 4992 0.608035 TTGGAGATCAACCCAACGGC 60.608 55.000 9.34 0.00 37.50 5.68
4671 4993 1.749258 GGAGATCAACCCAACGGCC 60.749 63.158 0.00 0.00 0.00 6.13
4672 4994 2.046314 AGATCAACCCAACGGCCG 60.046 61.111 26.86 26.86 0.00 6.13
4673 4995 3.131478 GATCAACCCAACGGCCGG 61.131 66.667 31.76 14.36 0.00 6.13
4682 5004 4.440829 AACGGCCGGCCCATTCAT 62.441 61.111 39.24 16.23 0.00 2.57
4683 5005 4.875713 ACGGCCGGCCCATTCATC 62.876 66.667 39.24 12.70 0.00 2.92
4684 5006 4.569180 CGGCCGGCCCATTCATCT 62.569 66.667 39.24 0.00 0.00 2.90
4685 5007 2.123726 GGCCGGCCCATTCATCTT 60.124 61.111 36.64 0.00 0.00 2.40
4686 5008 2.196245 GGCCGGCCCATTCATCTTC 61.196 63.158 36.64 4.38 0.00 2.87
4687 5009 2.196245 GCCGGCCCATTCATCTTCC 61.196 63.158 18.11 0.00 0.00 3.46
4688 5010 1.533711 CCGGCCCATTCATCTTCCT 59.466 57.895 0.00 0.00 0.00 3.36
4689 5011 0.536006 CCGGCCCATTCATCTTCCTC 60.536 60.000 0.00 0.00 0.00 3.71
4690 5012 0.536006 CGGCCCATTCATCTTCCTCC 60.536 60.000 0.00 0.00 0.00 4.30
4691 5013 0.849417 GGCCCATTCATCTTCCTCCT 59.151 55.000 0.00 0.00 0.00 3.69
4692 5014 1.202867 GGCCCATTCATCTTCCTCCTC 60.203 57.143 0.00 0.00 0.00 3.71
4693 5015 1.202867 GCCCATTCATCTTCCTCCTCC 60.203 57.143 0.00 0.00 0.00 4.30
4694 5016 1.423161 CCCATTCATCTTCCTCCTCCC 59.577 57.143 0.00 0.00 0.00 4.30
4695 5017 2.130193 CCATTCATCTTCCTCCTCCCA 58.870 52.381 0.00 0.00 0.00 4.37
4696 5018 2.158696 CCATTCATCTTCCTCCTCCCAC 60.159 54.545 0.00 0.00 0.00 4.61
4697 5019 1.584724 TTCATCTTCCTCCTCCCACC 58.415 55.000 0.00 0.00 0.00 4.61
4698 5020 0.417437 TCATCTTCCTCCTCCCACCA 59.583 55.000 0.00 0.00 0.00 4.17
4699 5021 0.543749 CATCTTCCTCCTCCCACCAC 59.456 60.000 0.00 0.00 0.00 4.16
4700 5022 0.621862 ATCTTCCTCCTCCCACCACC 60.622 60.000 0.00 0.00 0.00 4.61
4701 5023 2.606519 TTCCTCCTCCCACCACCG 60.607 66.667 0.00 0.00 0.00 4.94
4706 5028 4.047125 CCTCCCACCACCGCCATT 62.047 66.667 0.00 0.00 0.00 3.16
4707 5029 2.751436 CTCCCACCACCGCCATTG 60.751 66.667 0.00 0.00 0.00 2.82
4708 5030 4.358841 TCCCACCACCGCCATTGG 62.359 66.667 0.00 0.00 40.32 3.16
4715 5037 2.438434 ACCGCCATTGGTGCTAGC 60.438 61.111 8.10 8.10 41.85 3.42
4716 5038 2.124570 CCGCCATTGGTGCTAGCT 60.125 61.111 17.23 0.00 0.00 3.32
4717 5039 2.475466 CCGCCATTGGTGCTAGCTG 61.475 63.158 17.23 5.04 0.00 4.24
4718 5040 1.450134 CGCCATTGGTGCTAGCTGA 60.450 57.895 17.23 0.00 0.00 4.26
4719 5041 1.709147 CGCCATTGGTGCTAGCTGAC 61.709 60.000 17.23 6.46 0.00 3.51
4720 5042 0.677731 GCCATTGGTGCTAGCTGACA 60.678 55.000 17.23 9.27 0.00 3.58
4721 5043 1.376543 CCATTGGTGCTAGCTGACAG 58.623 55.000 17.23 0.00 0.00 3.51
4722 5044 1.339438 CCATTGGTGCTAGCTGACAGT 60.339 52.381 17.23 6.20 0.00 3.55
4723 5045 1.736126 CATTGGTGCTAGCTGACAGTG 59.264 52.381 17.23 14.11 0.00 3.66
4724 5046 0.758734 TTGGTGCTAGCTGACAGTGT 59.241 50.000 17.23 0.00 0.00 3.55
4725 5047 0.758734 TGGTGCTAGCTGACAGTGTT 59.241 50.000 17.23 0.00 0.00 3.32
4726 5048 1.140852 TGGTGCTAGCTGACAGTGTTT 59.859 47.619 17.23 0.00 0.00 2.83
4727 5049 1.532868 GGTGCTAGCTGACAGTGTTTG 59.467 52.381 17.23 0.00 0.00 2.93
4728 5050 2.483876 GTGCTAGCTGACAGTGTTTGA 58.516 47.619 17.23 0.00 0.00 2.69
4729 5051 3.070018 GTGCTAGCTGACAGTGTTTGAT 58.930 45.455 17.23 0.00 0.00 2.57
4730 5052 3.499918 GTGCTAGCTGACAGTGTTTGATT 59.500 43.478 17.23 0.00 0.00 2.57
4731 5053 3.499537 TGCTAGCTGACAGTGTTTGATTG 59.500 43.478 17.23 0.00 0.00 2.67
4732 5054 3.748048 GCTAGCTGACAGTGTTTGATTGA 59.252 43.478 7.70 0.00 0.00 2.57
4733 5055 4.142945 GCTAGCTGACAGTGTTTGATTGAG 60.143 45.833 7.70 0.00 0.00 3.02
4734 5056 3.813443 AGCTGACAGTGTTTGATTGAGT 58.187 40.909 3.99 0.00 0.00 3.41
4735 5057 3.562973 AGCTGACAGTGTTTGATTGAGTG 59.437 43.478 3.99 0.00 0.00 3.51
4736 5058 3.313526 GCTGACAGTGTTTGATTGAGTGT 59.686 43.478 3.99 0.00 0.00 3.55
4737 5059 4.787563 GCTGACAGTGTTTGATTGAGTGTG 60.788 45.833 3.99 0.00 0.00 3.82
4738 5060 3.627123 TGACAGTGTTTGATTGAGTGTGG 59.373 43.478 0.00 0.00 0.00 4.17
4739 5061 3.876914 GACAGTGTTTGATTGAGTGTGGA 59.123 43.478 0.00 0.00 0.00 4.02
4740 5062 3.879295 ACAGTGTTTGATTGAGTGTGGAG 59.121 43.478 0.00 0.00 0.00 3.86
4741 5063 4.129380 CAGTGTTTGATTGAGTGTGGAGA 58.871 43.478 0.00 0.00 0.00 3.71
4742 5064 4.212847 CAGTGTTTGATTGAGTGTGGAGAG 59.787 45.833 0.00 0.00 0.00 3.20
4743 5065 4.101585 AGTGTTTGATTGAGTGTGGAGAGA 59.898 41.667 0.00 0.00 0.00 3.10
4744 5066 4.212214 GTGTTTGATTGAGTGTGGAGAGAC 59.788 45.833 0.00 0.00 0.00 3.36
4745 5067 4.101585 TGTTTGATTGAGTGTGGAGAGACT 59.898 41.667 0.00 0.00 0.00 3.24
4746 5068 4.527509 TTGATTGAGTGTGGAGAGACTC 57.472 45.455 0.00 0.00 41.83 3.36
4747 5069 2.489722 TGATTGAGTGTGGAGAGACTCG 59.510 50.000 0.00 0.00 43.91 4.18
4748 5070 1.982660 TTGAGTGTGGAGAGACTCGT 58.017 50.000 0.00 0.00 43.91 4.18
4749 5071 1.239347 TGAGTGTGGAGAGACTCGTG 58.761 55.000 0.00 0.00 43.91 4.35
4750 5072 1.202770 TGAGTGTGGAGAGACTCGTGA 60.203 52.381 0.00 0.00 43.91 4.35
4751 5073 1.880675 GAGTGTGGAGAGACTCGTGAA 59.119 52.381 0.00 0.00 33.17 3.18
4752 5074 1.609555 AGTGTGGAGAGACTCGTGAAC 59.390 52.381 0.00 0.00 0.00 3.18
4753 5075 0.959553 TGTGGAGAGACTCGTGAACC 59.040 55.000 0.00 0.00 0.00 3.62
4754 5076 0.244178 GTGGAGAGACTCGTGAACCC 59.756 60.000 0.00 0.00 0.00 4.11
4755 5077 0.112606 TGGAGAGACTCGTGAACCCT 59.887 55.000 0.00 0.00 0.00 4.34
4756 5078 1.258676 GGAGAGACTCGTGAACCCTT 58.741 55.000 0.00 0.00 0.00 3.95
4757 5079 1.619332 GGAGAGACTCGTGAACCCTTT 59.381 52.381 0.00 0.00 0.00 3.11
4758 5080 2.610727 GGAGAGACTCGTGAACCCTTTG 60.611 54.545 0.00 0.00 0.00 2.77
4759 5081 2.036089 GAGAGACTCGTGAACCCTTTGT 59.964 50.000 0.00 0.00 0.00 2.83
4760 5082 3.228453 AGAGACTCGTGAACCCTTTGTA 58.772 45.455 0.00 0.00 0.00 2.41
4761 5083 3.640029 AGAGACTCGTGAACCCTTTGTAA 59.360 43.478 0.00 0.00 0.00 2.41
4762 5084 4.283722 AGAGACTCGTGAACCCTTTGTAAT 59.716 41.667 0.00 0.00 0.00 1.89
4763 5085 4.969484 AGACTCGTGAACCCTTTGTAATT 58.031 39.130 0.00 0.00 0.00 1.40
4764 5086 4.755123 AGACTCGTGAACCCTTTGTAATTG 59.245 41.667 0.00 0.00 0.00 2.32
4765 5087 4.457466 ACTCGTGAACCCTTTGTAATTGT 58.543 39.130 0.00 0.00 0.00 2.71
4766 5088 4.514066 ACTCGTGAACCCTTTGTAATTGTC 59.486 41.667 0.00 0.00 0.00 3.18
4767 5089 4.710324 TCGTGAACCCTTTGTAATTGTCT 58.290 39.130 0.00 0.00 0.00 3.41
4768 5090 4.513692 TCGTGAACCCTTTGTAATTGTCTG 59.486 41.667 0.00 0.00 0.00 3.51
4769 5091 4.274950 CGTGAACCCTTTGTAATTGTCTGT 59.725 41.667 0.00 0.00 0.00 3.41
4770 5092 5.519722 GTGAACCCTTTGTAATTGTCTGTG 58.480 41.667 0.00 0.00 0.00 3.66
4771 5093 4.037446 TGAACCCTTTGTAATTGTCTGTGC 59.963 41.667 0.00 0.00 0.00 4.57
4772 5094 2.552315 ACCCTTTGTAATTGTCTGTGCG 59.448 45.455 0.00 0.00 0.00 5.34
4773 5095 2.552315 CCCTTTGTAATTGTCTGTGCGT 59.448 45.455 0.00 0.00 0.00 5.24
4774 5096 3.004315 CCCTTTGTAATTGTCTGTGCGTT 59.996 43.478 0.00 0.00 0.00 4.84
4775 5097 4.499019 CCCTTTGTAATTGTCTGTGCGTTT 60.499 41.667 0.00 0.00 0.00 3.60
4776 5098 5.278071 CCCTTTGTAATTGTCTGTGCGTTTA 60.278 40.000 0.00 0.00 0.00 2.01
4777 5099 5.851177 CCTTTGTAATTGTCTGTGCGTTTAG 59.149 40.000 0.00 0.00 0.00 1.85
4778 5100 6.293190 CCTTTGTAATTGTCTGTGCGTTTAGA 60.293 38.462 0.00 0.00 0.00 2.10
4779 5101 6.606234 TTGTAATTGTCTGTGCGTTTAGAA 57.394 33.333 0.00 0.00 0.00 2.10
4780 5102 6.795098 TGTAATTGTCTGTGCGTTTAGAAT 57.205 33.333 0.00 0.00 0.00 2.40
4781 5103 7.892778 TGTAATTGTCTGTGCGTTTAGAATA 57.107 32.000 0.00 0.00 0.00 1.75
4782 5104 8.487313 TGTAATTGTCTGTGCGTTTAGAATAT 57.513 30.769 0.00 0.00 0.00 1.28
4783 5105 8.600625 TGTAATTGTCTGTGCGTTTAGAATATC 58.399 33.333 0.00 0.00 0.00 1.63
4784 5106 6.604735 ATTGTCTGTGCGTTTAGAATATCC 57.395 37.500 0.00 0.00 0.00 2.59
4785 5107 4.109766 TGTCTGTGCGTTTAGAATATCCG 58.890 43.478 0.00 0.00 0.00 4.18
4786 5108 3.060473 GTCTGTGCGTTTAGAATATCCGC 60.060 47.826 0.00 0.00 39.52 5.54
4787 5109 2.206750 TGTGCGTTTAGAATATCCGCC 58.793 47.619 0.00 0.00 38.68 6.13
4788 5110 2.159014 TGTGCGTTTAGAATATCCGCCT 60.159 45.455 0.00 0.00 38.68 5.52
4789 5111 2.475487 GTGCGTTTAGAATATCCGCCTC 59.525 50.000 0.00 0.00 38.68 4.70
4790 5112 2.101750 TGCGTTTAGAATATCCGCCTCA 59.898 45.455 0.00 0.00 38.68 3.86
4791 5113 2.475487 GCGTTTAGAATATCCGCCTCAC 59.525 50.000 0.00 0.00 35.04 3.51
4792 5114 3.057734 CGTTTAGAATATCCGCCTCACC 58.942 50.000 0.00 0.00 0.00 4.02
4793 5115 3.057734 GTTTAGAATATCCGCCTCACCG 58.942 50.000 0.00 0.00 0.00 4.94
4794 5116 1.991121 TAGAATATCCGCCTCACCGT 58.009 50.000 0.00 0.00 0.00 4.83
4795 5117 0.389391 AGAATATCCGCCTCACCGTG 59.611 55.000 0.00 0.00 0.00 4.94
4796 5118 0.104304 GAATATCCGCCTCACCGTGT 59.896 55.000 0.00 0.00 0.00 4.49
4797 5119 0.179084 AATATCCGCCTCACCGTGTG 60.179 55.000 0.00 0.00 34.45 3.82
4798 5120 2.644555 ATATCCGCCTCACCGTGTGC 62.645 60.000 0.00 2.36 32.98 4.57
4817 5139 4.753662 CCCCACCTCGACCTCGGA 62.754 72.222 0.00 0.00 40.29 4.55
4818 5140 3.141488 CCCACCTCGACCTCGGAG 61.141 72.222 0.00 0.00 40.29 4.63
4819 5141 2.361357 CCACCTCGACCTCGGAGT 60.361 66.667 4.02 0.00 40.29 3.85
4820 5142 2.701780 CCACCTCGACCTCGGAGTG 61.702 68.421 4.02 9.66 40.16 3.51
4821 5143 1.972223 CACCTCGACCTCGGAGTGT 60.972 63.158 4.02 1.62 37.71 3.55
4822 5144 1.228490 ACCTCGACCTCGGAGTGTT 60.228 57.895 4.02 0.00 40.29 3.32
4823 5145 1.213013 CCTCGACCTCGGAGTGTTG 59.787 63.158 4.02 5.99 40.29 3.33
4824 5146 1.241990 CCTCGACCTCGGAGTGTTGA 61.242 60.000 4.02 9.63 40.29 3.18
4825 5147 0.811915 CTCGACCTCGGAGTGTTGAT 59.188 55.000 13.53 0.00 40.29 2.57
4826 5148 0.809385 TCGACCTCGGAGTGTTGATC 59.191 55.000 4.02 0.00 40.29 2.92
4827 5149 0.179134 CGACCTCGGAGTGTTGATCC 60.179 60.000 4.02 0.00 35.37 3.36
4828 5150 1.187087 GACCTCGGAGTGTTGATCCT 58.813 55.000 4.02 0.00 34.45 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.989817 GTGCAAATGGTTTGATCCAGTTC 59.010 43.478 6.61 0.00 42.63 3.01
1 2 3.387374 TGTGCAAATGGTTTGATCCAGTT 59.613 39.130 6.61 0.00 44.84 3.16
2 3 2.964464 TGTGCAAATGGTTTGATCCAGT 59.036 40.909 6.61 0.00 43.26 4.00
3 4 3.663995 TGTGCAAATGGTTTGATCCAG 57.336 42.857 6.61 0.00 43.26 3.86
12 13 2.627699 AGATCGGTTTTGTGCAAATGGT 59.372 40.909 0.00 0.00 0.00 3.55
25 26 4.647611 TGGTGTTGATGTTTAGATCGGTT 58.352 39.130 0.00 0.00 0.00 4.44
29 30 5.801947 GTGCATTGGTGTTGATGTTTAGATC 59.198 40.000 0.00 0.00 0.00 2.75
42 43 6.368516 GCTAAATTAATTGTGTGCATTGGTGT 59.631 34.615 0.39 0.00 0.00 4.16
45 46 7.599630 AAGCTAAATTAATTGTGTGCATTGG 57.400 32.000 0.39 0.00 0.00 3.16
111 115 4.452455 GTCCTTGAATCAGACGAAACACAT 59.548 41.667 0.00 0.00 0.00 3.21
112 116 3.807622 GTCCTTGAATCAGACGAAACACA 59.192 43.478 0.00 0.00 0.00 3.72
119 123 5.891451 TGTAGTATGTCCTTGAATCAGACG 58.109 41.667 0.00 0.00 33.09 4.18
147 152 7.335924 ACTGGCATATTAGTTCTTTAGCGAAAA 59.664 33.333 0.00 0.00 0.00 2.29
161 166 8.627208 AGATATTGGTGAAACTGGCATATTAG 57.373 34.615 0.00 0.00 36.74 1.73
168 173 5.880332 TGTTAGAGATATTGGTGAAACTGGC 59.120 40.000 0.00 0.00 36.74 4.85
181 186 9.664332 GCCACTTTGATCATATGTTAGAGATAT 57.336 33.333 1.90 0.00 0.00 1.63
182 187 8.650490 TGCCACTTTGATCATATGTTAGAGATA 58.350 33.333 1.90 0.00 0.00 1.98
261 267 6.097839 ACGGCTATGTCTGAACCTATCTAAAA 59.902 38.462 0.00 0.00 0.00 1.52
317 324 6.715344 TTACGCACGATATTCAGTTCTTTT 57.285 33.333 0.00 0.00 0.00 2.27
321 328 7.095774 ACCATTATTACGCACGATATTCAGTTC 60.096 37.037 0.00 0.00 0.00 3.01
361 376 7.173722 AGTCATCATCTTGGTGAGAGATTTTT 58.826 34.615 0.00 0.00 38.32 1.94
400 415 3.627395 TCTTTCATCAGCGGGTAATGT 57.373 42.857 0.00 0.00 0.00 2.71
410 426 5.710513 TCAACCATTGGTTCTTTCATCAG 57.289 39.130 18.27 4.44 43.05 2.90
413 429 5.307716 ACCATTCAACCATTGGTTCTTTCAT 59.692 36.000 18.27 3.82 43.05 2.57
415 431 5.213891 ACCATTCAACCATTGGTTCTTTC 57.786 39.130 18.27 0.00 43.05 2.62
427 443 3.068448 ACCACCGTTTTAACCATTCAACC 59.932 43.478 0.00 0.00 0.00 3.77
432 448 2.362717 CACCACCACCGTTTTAACCATT 59.637 45.455 0.00 0.00 0.00 3.16
436 452 1.391577 ACCACCACCACCGTTTTAAC 58.608 50.000 0.00 0.00 0.00 2.01
439 455 0.547553 AGTACCACCACCACCGTTTT 59.452 50.000 0.00 0.00 0.00 2.43
440 456 0.107268 GAGTACCACCACCACCGTTT 59.893 55.000 0.00 0.00 0.00 3.60
441 457 0.761702 AGAGTACCACCACCACCGTT 60.762 55.000 0.00 0.00 0.00 4.44
442 458 0.112995 TAGAGTACCACCACCACCGT 59.887 55.000 0.00 0.00 0.00 4.83
443 459 1.203994 CTTAGAGTACCACCACCACCG 59.796 57.143 0.00 0.00 0.00 4.94
444 460 1.066358 GCTTAGAGTACCACCACCACC 60.066 57.143 0.00 0.00 0.00 4.61
445 461 1.066358 GGCTTAGAGTACCACCACCAC 60.066 57.143 0.00 0.00 0.00 4.16
446 462 1.272807 GGCTTAGAGTACCACCACCA 58.727 55.000 0.00 0.00 0.00 4.17
447 463 0.540454 GGGCTTAGAGTACCACCACC 59.460 60.000 0.00 0.00 0.00 4.61
453 495 2.570302 TCTTTGGTGGGCTTAGAGTACC 59.430 50.000 0.00 0.00 0.00 3.34
457 499 3.634397 TGATCTTTGGTGGGCTTAGAG 57.366 47.619 0.00 0.00 0.00 2.43
458 500 4.079253 GTTTGATCTTTGGTGGGCTTAGA 58.921 43.478 0.00 0.00 0.00 2.10
468 510 2.778299 TGACCGAGGTTTGATCTTTGG 58.222 47.619 0.00 0.00 0.00 3.28
489 531 4.082787 GGAATTGTGGAGCTTCAAAATCGA 60.083 41.667 11.04 0.00 0.00 3.59
530 572 5.221028 CCACAAACATACACTCACACAATGT 60.221 40.000 0.00 0.00 32.32 2.71
532 574 4.887071 ACCACAAACATACACTCACACAAT 59.113 37.500 0.00 0.00 0.00 2.71
545 587 2.170187 ACAATTGCACCACCACAAACAT 59.830 40.909 5.05 0.00 0.00 2.71
547 589 2.307934 ACAATTGCACCACCACAAAC 57.692 45.000 5.05 0.00 0.00 2.93
550 592 0.947960 CGTACAATTGCACCACCACA 59.052 50.000 5.05 0.00 0.00 4.17
563 605 9.970395 CAACTATTATAATGTAGACCCGTACAA 57.030 33.333 8.28 0.00 36.51 2.41
608 650 8.500753 AAAGGCATATCATACGTTTTCACTTA 57.499 30.769 0.00 0.00 0.00 2.24
619 661 7.710907 TCGGATAGCAATAAAGGCATATCATAC 59.289 37.037 0.00 0.00 0.00 2.39
646 691 2.274232 TAGCGTCATTGTCGGGTCCG 62.274 60.000 2.52 2.52 41.35 4.79
669 714 1.452145 TTCAACAAGAAGGCGCCCAC 61.452 55.000 26.15 17.92 0.00 4.61
673 718 0.863144 TACGTTCAACAAGAAGGCGC 59.137 50.000 0.00 0.00 44.00 6.53
680 725 6.953743 CGGACAAAGATAATACGTTCAACAAG 59.046 38.462 0.00 0.00 0.00 3.16
686 731 5.751990 ACATCCGGACAAAGATAATACGTTC 59.248 40.000 6.12 0.00 0.00 3.95
689 734 6.598753 AAACATCCGGACAAAGATAATACG 57.401 37.500 6.12 0.00 0.00 3.06
705 750 7.964604 ATAGCGAATTAGGTCTAAAACATCC 57.035 36.000 0.00 0.00 0.00 3.51
713 758 5.410746 CGTCAGGTATAGCGAATTAGGTCTA 59.589 44.000 0.00 0.00 0.00 2.59
715 760 4.023365 ACGTCAGGTATAGCGAATTAGGTC 60.023 45.833 0.00 0.00 0.00 3.85
718 878 5.049612 TCAGACGTCAGGTATAGCGAATTAG 60.050 44.000 19.50 0.00 0.00 1.73
724 884 2.717530 GTTCAGACGTCAGGTATAGCG 58.282 52.381 19.50 0.00 0.00 4.26
737 897 5.164080 CGTCAGGATAAAGTTTCGTTCAGAC 60.164 44.000 0.00 0.95 0.00 3.51
739 899 4.684703 ACGTCAGGATAAAGTTTCGTTCAG 59.315 41.667 0.00 0.00 0.00 3.02
741 901 5.587033 AACGTCAGGATAAAGTTTCGTTC 57.413 39.130 0.00 0.00 35.87 3.95
742 902 5.996669 AAACGTCAGGATAAAGTTTCGTT 57.003 34.783 0.00 0.00 40.92 3.85
786 947 9.924650 AAAGAAATACAGAAACACGACTATAGT 57.075 29.630 4.68 4.68 0.00 2.12
790 951 8.428186 ACAAAAGAAATACAGAAACACGACTA 57.572 30.769 0.00 0.00 0.00 2.59
794 955 8.042119 CGAAAACAAAAGAAATACAGAAACACG 58.958 33.333 0.00 0.00 0.00 4.49
796 957 9.796120 ATCGAAAACAAAAGAAATACAGAAACA 57.204 25.926 0.00 0.00 0.00 2.83
819 981 9.464714 CCTCCGTCCATTATAAATATAAGATCG 57.535 37.037 0.00 2.72 32.24 3.69
820 982 9.765795 CCCTCCGTCCATTATAAATATAAGATC 57.234 37.037 0.00 0.00 32.24 2.75
821 983 9.502035 TCCCTCCGTCCATTATAAATATAAGAT 57.498 33.333 0.00 0.00 32.24 2.40
822 984 8.904648 TCCCTCCGTCCATTATAAATATAAGA 57.095 34.615 0.00 0.00 32.24 2.10
823 985 8.759782 ACTCCCTCCGTCCATTATAAATATAAG 58.240 37.037 0.00 0.00 32.24 1.73
824 986 8.674925 ACTCCCTCCGTCCATTATAAATATAA 57.325 34.615 0.00 0.00 33.16 0.98
825 987 9.947189 ATACTCCCTCCGTCCATTATAAATATA 57.053 33.333 0.00 0.00 0.00 0.86
826 988 8.855804 ATACTCCCTCCGTCCATTATAAATAT 57.144 34.615 0.00 0.00 0.00 1.28
827 989 8.674925 AATACTCCCTCCGTCCATTATAAATA 57.325 34.615 0.00 0.00 0.00 1.40
828 990 7.569599 AATACTCCCTCCGTCCATTATAAAT 57.430 36.000 0.00 0.00 0.00 1.40
829 991 7.383156 AAATACTCCCTCCGTCCATTATAAA 57.617 36.000 0.00 0.00 0.00 1.40
834 996 3.071167 GCTAAATACTCCCTCCGTCCATT 59.929 47.826 0.00 0.00 0.00 3.16
922 1091 2.739292 TCTGTCAGAAGAACGTTTCGG 58.261 47.619 0.46 0.00 34.02 4.30
978 1147 0.734942 CCGTTAGCATCACGACCGTT 60.735 55.000 4.11 0.00 40.20 4.44
1035 1213 0.242825 TGGTTCGGTCGCTAGTCAAG 59.757 55.000 0.00 0.00 0.00 3.02
1299 1483 5.623141 GCCAAGAATCTGAGTTTCCAAATCC 60.623 44.000 0.00 0.00 0.00 3.01
1365 1555 6.904626 ACAAATAGGAAATCTACCAGCAGAT 58.095 36.000 0.00 0.00 36.83 2.90
1399 1589 8.958506 ACTACTATTACACAACAAGAGGAGTAG 58.041 37.037 0.00 0.00 36.79 2.57
1438 1628 3.505680 CAGCAACTAAGCAAACCATACCA 59.494 43.478 0.00 0.00 36.85 3.25
1507 1697 4.971939 TGATTCAACTTCCATGTCTGACA 58.028 39.130 13.60 13.60 0.00 3.58
1508 1698 4.999950 ACTGATTCAACTTCCATGTCTGAC 59.000 41.667 0.00 0.00 0.00 3.51
1513 1703 4.889409 ACACAACTGATTCAACTTCCATGT 59.111 37.500 0.00 0.00 0.00 3.21
1533 1723 5.295787 TGATGACCAACAGAGTAAAACACAC 59.704 40.000 0.00 0.00 0.00 3.82
1534 1724 5.295787 GTGATGACCAACAGAGTAAAACACA 59.704 40.000 0.00 0.00 0.00 3.72
1535 1725 5.277828 GGTGATGACCAACAGAGTAAAACAC 60.278 44.000 0.00 0.00 42.59 3.32
1584 1775 5.649782 ACCATGGTTCAGATTTCATGTTC 57.350 39.130 13.00 0.00 36.27 3.18
1600 1791 3.455910 TGGAGATAACAGAGGAACCATGG 59.544 47.826 11.19 11.19 0.00 3.66
1604 1795 2.501723 TGCTGGAGATAACAGAGGAACC 59.498 50.000 0.00 0.00 38.20 3.62
1685 1876 6.298361 TGTTATACATATTGCCTGACTGCAT 58.702 36.000 0.00 0.00 41.70 3.96
1780 1971 6.491383 ACAGACCAAGGATCTACTAACAGTA 58.509 40.000 0.00 0.00 0.00 2.74
2056 2247 7.011763 TGCGTAAGTAACAGAGTACAGGTATAG 59.988 40.741 0.00 0.00 41.68 1.31
2187 2381 8.483307 TCCTAAATGTATTTCTTTACCGTGTC 57.517 34.615 0.00 0.00 0.00 3.67
2313 2509 7.327975 TGGAGTGAACATATACTCGTTGATTT 58.672 34.615 0.00 0.00 43.24 2.17
2406 2607 5.402398 GTTCTTTGCCTAATAAAGCCACAG 58.598 41.667 0.00 0.00 35.61 3.66
2439 2640 9.499585 CTGCAAGAAAACATATACTGAATGAAG 57.500 33.333 0.00 0.00 34.07 3.02
2567 2768 7.361286 GCCAAAACAGGTGAAATTAGAGTAGAG 60.361 40.741 0.00 0.00 0.00 2.43
2645 2846 7.156876 TGCGTCTGGAAAAGAAATAATGATT 57.843 32.000 0.00 0.00 36.40 2.57
2675 2876 9.630098 AACACAAATTGCTACATTCATCTAAAG 57.370 29.630 0.00 0.00 0.00 1.85
2836 3037 9.202273 GCTCATCTTCATACAAGATAACCTAAG 57.798 37.037 0.00 0.00 35.39 2.18
3060 3285 4.442706 CAGTAGATCATACCCAAAAGCGT 58.557 43.478 0.00 0.00 0.00 5.07
3098 3323 8.495361 TTCTCTTACTACTAGAGACACATCAC 57.505 38.462 0.00 0.00 45.75 3.06
3152 3425 5.337578 TTCTTTGTGGGAAAACTGGAAAG 57.662 39.130 0.00 0.00 0.00 2.62
3203 3476 5.091261 AGAGTGAACACACTGAAGAACTT 57.909 39.130 7.61 0.00 43.70 2.66
3285 3559 6.680148 AGCTTCTAGAATTCTAATCCCCTC 57.320 41.667 15.85 3.03 0.00 4.30
3339 3613 1.220817 GCATTGTGCCCAAAACCACG 61.221 55.000 0.00 0.00 37.42 4.94
3367 3641 4.241590 TCAAACATTTGCACATGAGACC 57.758 40.909 19.41 0.00 38.05 3.85
3429 3703 7.110810 GGTAATAAGAAGTTGTTAGGCTCCTT 58.889 38.462 0.00 0.00 0.00 3.36
3549 3823 1.146707 ACGCAGTACAACCGGGTTT 59.853 52.632 10.33 0.00 41.94 3.27
3552 3826 1.301087 TTCACGCAGTACAACCGGG 60.301 57.895 6.32 0.00 41.61 5.73
3623 3897 4.770010 AGTACTTGTTCAAGAGAGAGAGGG 59.230 45.833 17.75 0.00 0.00 4.30
3624 3898 5.975693 AGTACTTGTTCAAGAGAGAGAGG 57.024 43.478 17.75 0.00 0.00 3.69
3660 3954 4.047822 CGCTCCAACATTTTGCAGTTAAA 58.952 39.130 0.00 0.00 0.00 1.52
3789 4083 0.615331 TCTGGGTCTTCTGCATCACC 59.385 55.000 0.00 0.00 0.00 4.02
3834 4128 2.867624 ACACACGGTAGAGGTGTCTTA 58.132 47.619 0.00 0.00 46.27 2.10
3870 4172 0.745128 TTGTGACCACGGTTGACCAC 60.745 55.000 0.51 0.00 35.14 4.16
3873 4175 0.935196 GAGTTGTGACCACGGTTGAC 59.065 55.000 0.00 0.00 0.00 3.18
3986 4293 3.365265 GTTCACAAGCCCAGCCCG 61.365 66.667 0.00 0.00 0.00 6.13
3992 4299 2.297701 TCTGTCAAAGTTCACAAGCCC 58.702 47.619 0.00 0.00 0.00 5.19
3994 4301 6.545504 TCTTATCTGTCAAAGTTCACAAGC 57.454 37.500 0.00 0.00 0.00 4.01
3995 4302 7.042725 TCGTTCTTATCTGTCAAAGTTCACAAG 60.043 37.037 0.00 0.00 0.00 3.16
3996 4303 6.759356 TCGTTCTTATCTGTCAAAGTTCACAA 59.241 34.615 0.00 0.00 0.00 3.33
3997 4304 6.277605 TCGTTCTTATCTGTCAAAGTTCACA 58.722 36.000 0.00 0.00 0.00 3.58
3998 4305 6.764877 TCGTTCTTATCTGTCAAAGTTCAC 57.235 37.500 0.00 0.00 0.00 3.18
3999 4306 6.128553 GCATCGTTCTTATCTGTCAAAGTTCA 60.129 38.462 0.00 0.00 0.00 3.18
4000 4307 6.244275 GCATCGTTCTTATCTGTCAAAGTTC 58.756 40.000 0.00 0.00 0.00 3.01
4001 4308 5.122396 GGCATCGTTCTTATCTGTCAAAGTT 59.878 40.000 0.00 0.00 0.00 2.66
4002 4309 4.631813 GGCATCGTTCTTATCTGTCAAAGT 59.368 41.667 0.00 0.00 0.00 2.66
4003 4310 4.631377 TGGCATCGTTCTTATCTGTCAAAG 59.369 41.667 0.00 0.00 0.00 2.77
4004 4311 4.391830 GTGGCATCGTTCTTATCTGTCAAA 59.608 41.667 0.00 0.00 0.00 2.69
4022 4329 1.891919 GCCGAAACTGACAGTGGCA 60.892 57.895 23.73 0.00 35.55 4.92
4025 4332 1.197721 GGATTGCCGAAACTGACAGTG 59.802 52.381 9.33 0.00 0.00 3.66
4026 4333 1.072331 AGGATTGCCGAAACTGACAGT 59.928 47.619 1.07 1.07 39.96 3.55
4030 4337 2.787473 ATGAGGATTGCCGAAACTGA 57.213 45.000 0.00 0.00 39.96 3.41
4037 4344 2.289820 CAGTCATGAATGAGGATTGCCG 59.710 50.000 18.07 0.00 37.51 5.69
4068 4375 6.152379 GGAAAAATGAACTGAAGCCTGTAAG 58.848 40.000 0.00 0.00 0.00 2.34
4114 4421 0.163788 CTGACAAGGCAGCGTTAACG 59.836 55.000 23.40 23.40 43.27 3.18
4138 4445 4.129737 ACCCGAGGCGATGTCGTG 62.130 66.667 4.20 0.00 42.22 4.35
4142 4449 3.000819 TTCCACCCGAGGCGATGT 61.001 61.111 0.00 0.00 0.00 3.06
4316 4629 3.195698 GTGGATCTTCACGGGCGC 61.196 66.667 0.00 0.00 0.00 6.53
4473 4786 0.698818 ATTGGGTTGGGTCAGGACTC 59.301 55.000 0.00 0.00 0.00 3.36
4497 4810 9.774742 GTTGATTCTTTGTTGCTTACCTATAAG 57.225 33.333 0.00 0.00 40.83 1.73
4498 4811 9.290988 TGTTGATTCTTTGTTGCTTACCTATAA 57.709 29.630 0.00 0.00 0.00 0.98
4500 4813 7.759489 TGTTGATTCTTTGTTGCTTACCTAT 57.241 32.000 0.00 0.00 0.00 2.57
4564 4882 5.175126 CCAGATACAAAATCGCGTAACTAGG 59.825 44.000 5.77 0.00 0.00 3.02
4569 4887 3.263261 TGCCAGATACAAAATCGCGTAA 58.737 40.909 5.77 0.00 0.00 3.18
4574 4892 4.621068 ACACATGCCAGATACAAAATCG 57.379 40.909 0.00 0.00 0.00 3.34
4583 4901 4.144297 ACAGTTTACAACACATGCCAGAT 58.856 39.130 0.00 0.00 0.00 2.90
4606 4924 9.793252 CATTTTCTTTCTTATGATTTCCGTCAT 57.207 29.630 0.00 0.00 41.49 3.06
4613 4935 8.037166 GCTGTCCCATTTTCTTTCTTATGATTT 58.963 33.333 0.00 0.00 0.00 2.17
4626 4948 2.288948 TGCACAATGCTGTCCCATTTTC 60.289 45.455 2.02 0.00 45.31 2.29
4627 4949 1.693062 TGCACAATGCTGTCCCATTTT 59.307 42.857 2.02 0.00 45.31 1.82
4628 4950 1.340088 TGCACAATGCTGTCCCATTT 58.660 45.000 2.02 0.00 45.31 2.32
4629 4951 1.479323 GATGCACAATGCTGTCCCATT 59.521 47.619 2.02 0.00 45.31 3.16
4630 4952 1.108776 GATGCACAATGCTGTCCCAT 58.891 50.000 2.02 0.00 45.31 4.00
4631 4953 0.251253 TGATGCACAATGCTGTCCCA 60.251 50.000 2.02 0.00 45.31 4.37
4632 4954 1.108776 ATGATGCACAATGCTGTCCC 58.891 50.000 2.02 0.00 45.31 4.46
4633 4955 2.536365 CAATGATGCACAATGCTGTCC 58.464 47.619 2.02 0.00 45.31 4.02
4634 4956 2.164827 TCCAATGATGCACAATGCTGTC 59.835 45.455 2.02 1.69 45.31 3.51
4635 4957 2.165641 CTCCAATGATGCACAATGCTGT 59.834 45.455 2.02 0.00 45.31 4.40
4636 4958 2.425668 TCTCCAATGATGCACAATGCTG 59.574 45.455 2.02 0.00 45.31 4.41
4637 4959 2.730382 TCTCCAATGATGCACAATGCT 58.270 42.857 2.02 0.00 45.31 3.79
4638 4960 3.067601 TGATCTCCAATGATGCACAATGC 59.932 43.478 0.00 0.00 45.29 3.56
4639 4961 4.911514 TGATCTCCAATGATGCACAATG 57.088 40.909 0.00 0.00 0.00 2.82
4640 4962 4.098960 GGTTGATCTCCAATGATGCACAAT 59.901 41.667 0.00 0.00 37.08 2.71
4641 4963 3.444742 GGTTGATCTCCAATGATGCACAA 59.555 43.478 0.00 0.00 37.08 3.33
4642 4964 3.018856 GGTTGATCTCCAATGATGCACA 58.981 45.455 0.00 0.00 37.08 4.57
4643 4965 2.360165 GGGTTGATCTCCAATGATGCAC 59.640 50.000 0.00 0.00 37.08 4.57
4644 4966 2.025131 TGGGTTGATCTCCAATGATGCA 60.025 45.455 9.12 0.00 37.08 3.96
4645 4967 2.658285 TGGGTTGATCTCCAATGATGC 58.342 47.619 9.12 0.00 37.08 3.91
4646 4968 4.644103 GTTGGGTTGATCTCCAATGATG 57.356 45.455 15.20 0.00 43.84 3.07
4649 4971 1.745087 CCGTTGGGTTGATCTCCAATG 59.255 52.381 19.31 19.31 43.84 2.82
4650 4972 1.955208 GCCGTTGGGTTGATCTCCAAT 60.955 52.381 15.20 0.00 43.84 3.16
4651 4973 0.608035 GCCGTTGGGTTGATCTCCAA 60.608 55.000 10.30 10.30 40.36 3.53
4652 4974 1.002624 GCCGTTGGGTTGATCTCCA 60.003 57.895 9.12 4.80 34.97 3.86
4653 4975 1.749258 GGCCGTTGGGTTGATCTCC 60.749 63.158 0.00 0.00 34.97 3.71
4654 4976 2.106683 CGGCCGTTGGGTTGATCTC 61.107 63.158 19.50 0.00 34.97 2.75
4655 4977 2.046314 CGGCCGTTGGGTTGATCT 60.046 61.111 19.50 0.00 34.97 2.75
4656 4978 3.131478 CCGGCCGTTGGGTTGATC 61.131 66.667 26.12 0.00 34.97 2.92
4665 4987 4.440829 ATGAATGGGCCGGCCGTT 62.441 61.111 38.22 32.92 36.85 4.44
4666 4988 4.875713 GATGAATGGGCCGGCCGT 62.876 66.667 38.22 26.81 36.85 5.68
4667 4989 4.569180 AGATGAATGGGCCGGCCG 62.569 66.667 38.22 21.04 36.85 6.13
4668 4990 2.123726 AAGATGAATGGGCCGGCC 60.124 61.111 38.57 38.57 0.00 6.13
4669 4991 2.196245 GGAAGATGAATGGGCCGGC 61.196 63.158 21.18 21.18 0.00 6.13
4670 4992 0.536006 GAGGAAGATGAATGGGCCGG 60.536 60.000 0.00 0.00 0.00 6.13
4671 4993 0.536006 GGAGGAAGATGAATGGGCCG 60.536 60.000 0.00 0.00 0.00 6.13
4672 4994 0.849417 AGGAGGAAGATGAATGGGCC 59.151 55.000 0.00 0.00 0.00 5.80
4673 4995 1.202867 GGAGGAGGAAGATGAATGGGC 60.203 57.143 0.00 0.00 0.00 5.36
4674 4996 1.423161 GGGAGGAGGAAGATGAATGGG 59.577 57.143 0.00 0.00 0.00 4.00
4675 4997 2.130193 TGGGAGGAGGAAGATGAATGG 58.870 52.381 0.00 0.00 0.00 3.16
4676 4998 2.158696 GGTGGGAGGAGGAAGATGAATG 60.159 54.545 0.00 0.00 0.00 2.67
4677 4999 2.131023 GGTGGGAGGAGGAAGATGAAT 58.869 52.381 0.00 0.00 0.00 2.57
4678 5000 1.203428 TGGTGGGAGGAGGAAGATGAA 60.203 52.381 0.00 0.00 0.00 2.57
4679 5001 0.417437 TGGTGGGAGGAGGAAGATGA 59.583 55.000 0.00 0.00 0.00 2.92
4680 5002 0.543749 GTGGTGGGAGGAGGAAGATG 59.456 60.000 0.00 0.00 0.00 2.90
4681 5003 0.621862 GGTGGTGGGAGGAGGAAGAT 60.622 60.000 0.00 0.00 0.00 2.40
4682 5004 1.229529 GGTGGTGGGAGGAGGAAGA 60.230 63.158 0.00 0.00 0.00 2.87
4683 5005 2.660064 CGGTGGTGGGAGGAGGAAG 61.660 68.421 0.00 0.00 0.00 3.46
4684 5006 2.606519 CGGTGGTGGGAGGAGGAA 60.607 66.667 0.00 0.00 0.00 3.36
4689 5011 4.047125 AATGGCGGTGGTGGGAGG 62.047 66.667 0.00 0.00 0.00 4.30
4690 5012 2.751436 CAATGGCGGTGGTGGGAG 60.751 66.667 0.00 0.00 0.00 4.30
4691 5013 4.358841 CCAATGGCGGTGGTGGGA 62.359 66.667 0.00 0.00 0.00 4.37
4698 5020 2.438434 GCTAGCACCAATGGCGGT 60.438 61.111 10.63 0.00 41.07 5.68
4699 5021 2.124570 AGCTAGCACCAATGGCGG 60.125 61.111 18.83 0.00 36.08 6.13
4700 5022 1.450134 TCAGCTAGCACCAATGGCG 60.450 57.895 18.83 0.00 36.08 5.69
4701 5023 0.677731 TGTCAGCTAGCACCAATGGC 60.678 55.000 18.83 8.08 0.00 4.40
4702 5024 1.339438 ACTGTCAGCTAGCACCAATGG 60.339 52.381 18.83 0.00 0.00 3.16
4703 5025 1.736126 CACTGTCAGCTAGCACCAATG 59.264 52.381 18.83 6.00 0.00 2.82
4704 5026 1.349026 ACACTGTCAGCTAGCACCAAT 59.651 47.619 18.83 0.00 0.00 3.16
4705 5027 0.758734 ACACTGTCAGCTAGCACCAA 59.241 50.000 18.83 0.00 0.00 3.67
4706 5028 0.758734 AACACTGTCAGCTAGCACCA 59.241 50.000 18.83 9.05 0.00 4.17
4707 5029 1.532868 CAAACACTGTCAGCTAGCACC 59.467 52.381 18.83 4.37 0.00 5.01
4708 5030 2.483876 TCAAACACTGTCAGCTAGCAC 58.516 47.619 18.83 7.94 0.00 4.40
4709 5031 2.908688 TCAAACACTGTCAGCTAGCA 57.091 45.000 18.83 0.00 0.00 3.49
4710 5032 3.748048 TCAATCAAACACTGTCAGCTAGC 59.252 43.478 6.62 6.62 0.00 3.42
4711 5033 4.993584 ACTCAATCAAACACTGTCAGCTAG 59.006 41.667 0.00 0.00 0.00 3.42
4712 5034 4.751600 CACTCAATCAAACACTGTCAGCTA 59.248 41.667 0.00 0.00 0.00 3.32
4713 5035 3.562973 CACTCAATCAAACACTGTCAGCT 59.437 43.478 0.00 0.00 0.00 4.24
4714 5036 3.313526 ACACTCAATCAAACACTGTCAGC 59.686 43.478 0.00 0.00 0.00 4.26
4715 5037 4.260907 CCACACTCAATCAAACACTGTCAG 60.261 45.833 0.00 0.00 0.00 3.51
4716 5038 3.627123 CCACACTCAATCAAACACTGTCA 59.373 43.478 0.00 0.00 0.00 3.58
4717 5039 3.876914 TCCACACTCAATCAAACACTGTC 59.123 43.478 0.00 0.00 0.00 3.51
4718 5040 3.879295 CTCCACACTCAATCAAACACTGT 59.121 43.478 0.00 0.00 0.00 3.55
4719 5041 4.129380 TCTCCACACTCAATCAAACACTG 58.871 43.478 0.00 0.00 0.00 3.66
4720 5042 4.101585 TCTCTCCACACTCAATCAAACACT 59.898 41.667 0.00 0.00 0.00 3.55
4721 5043 4.212214 GTCTCTCCACACTCAATCAAACAC 59.788 45.833 0.00 0.00 0.00 3.32
4722 5044 4.101585 AGTCTCTCCACACTCAATCAAACA 59.898 41.667 0.00 0.00 0.00 2.83
4723 5045 4.636249 AGTCTCTCCACACTCAATCAAAC 58.364 43.478 0.00 0.00 0.00 2.93
4724 5046 4.559502 CGAGTCTCTCCACACTCAATCAAA 60.560 45.833 0.00 0.00 39.29 2.69
4725 5047 3.057245 CGAGTCTCTCCACACTCAATCAA 60.057 47.826 0.00 0.00 39.29 2.57
4726 5048 2.489722 CGAGTCTCTCCACACTCAATCA 59.510 50.000 0.00 0.00 39.29 2.57
4727 5049 2.490115 ACGAGTCTCTCCACACTCAATC 59.510 50.000 0.00 0.00 39.29 2.67
4728 5050 2.230025 CACGAGTCTCTCCACACTCAAT 59.770 50.000 0.00 0.00 39.29 2.57
4729 5051 1.609072 CACGAGTCTCTCCACACTCAA 59.391 52.381 0.00 0.00 39.29 3.02
4730 5052 1.202770 TCACGAGTCTCTCCACACTCA 60.203 52.381 0.00 0.00 39.29 3.41
4731 5053 1.524848 TCACGAGTCTCTCCACACTC 58.475 55.000 0.00 0.00 36.45 3.51
4732 5054 1.609555 GTTCACGAGTCTCTCCACACT 59.390 52.381 0.00 0.00 0.00 3.55
4733 5055 1.336056 GGTTCACGAGTCTCTCCACAC 60.336 57.143 0.00 0.00 0.00 3.82
4734 5056 0.959553 GGTTCACGAGTCTCTCCACA 59.040 55.000 0.00 0.00 0.00 4.17
4735 5057 0.244178 GGGTTCACGAGTCTCTCCAC 59.756 60.000 0.00 0.00 0.00 4.02
4736 5058 0.112606 AGGGTTCACGAGTCTCTCCA 59.887 55.000 0.00 0.00 0.00 3.86
4737 5059 1.258676 AAGGGTTCACGAGTCTCTCC 58.741 55.000 0.00 0.00 0.00 3.71
4738 5060 2.036089 ACAAAGGGTTCACGAGTCTCTC 59.964 50.000 0.00 0.00 0.00 3.20
4739 5061 2.040178 ACAAAGGGTTCACGAGTCTCT 58.960 47.619 0.00 0.00 0.00 3.10
4740 5062 2.528041 ACAAAGGGTTCACGAGTCTC 57.472 50.000 0.00 0.00 0.00 3.36
4741 5063 4.618920 ATTACAAAGGGTTCACGAGTCT 57.381 40.909 0.00 0.00 0.00 3.24
4742 5064 4.514066 ACAATTACAAAGGGTTCACGAGTC 59.486 41.667 0.00 0.00 0.00 3.36
4743 5065 4.457466 ACAATTACAAAGGGTTCACGAGT 58.543 39.130 0.00 0.00 0.00 4.18
4744 5066 4.755123 AGACAATTACAAAGGGTTCACGAG 59.245 41.667 0.00 0.00 0.00 4.18
4745 5067 4.513692 CAGACAATTACAAAGGGTTCACGA 59.486 41.667 0.00 0.00 0.00 4.35
4746 5068 4.274950 ACAGACAATTACAAAGGGTTCACG 59.725 41.667 0.00 0.00 0.00 4.35
4747 5069 5.519722 CACAGACAATTACAAAGGGTTCAC 58.480 41.667 0.00 0.00 0.00 3.18
4748 5070 4.037446 GCACAGACAATTACAAAGGGTTCA 59.963 41.667 0.00 0.00 0.00 3.18
4749 5071 4.546570 GCACAGACAATTACAAAGGGTTC 58.453 43.478 0.00 0.00 0.00 3.62
4750 5072 3.004315 CGCACAGACAATTACAAAGGGTT 59.996 43.478 0.00 0.00 0.00 4.11
4751 5073 2.552315 CGCACAGACAATTACAAAGGGT 59.448 45.455 0.00 0.00 0.00 4.34
4752 5074 2.552315 ACGCACAGACAATTACAAAGGG 59.448 45.455 0.00 0.00 0.00 3.95
4753 5075 3.896648 ACGCACAGACAATTACAAAGG 57.103 42.857 0.00 0.00 0.00 3.11
4754 5076 6.655062 TCTAAACGCACAGACAATTACAAAG 58.345 36.000 0.00 0.00 0.00 2.77
4755 5077 6.606234 TCTAAACGCACAGACAATTACAAA 57.394 33.333 0.00 0.00 0.00 2.83
4756 5078 6.606234 TTCTAAACGCACAGACAATTACAA 57.394 33.333 0.00 0.00 0.00 2.41
4757 5079 6.795098 ATTCTAAACGCACAGACAATTACA 57.205 33.333 0.00 0.00 0.00 2.41
4758 5080 8.062448 GGATATTCTAAACGCACAGACAATTAC 58.938 37.037 0.00 0.00 0.00 1.89
4759 5081 7.042992 CGGATATTCTAAACGCACAGACAATTA 60.043 37.037 0.00 0.00 0.00 1.40
4760 5082 6.238103 CGGATATTCTAAACGCACAGACAATT 60.238 38.462 0.00 0.00 0.00 2.32
4761 5083 5.234329 CGGATATTCTAAACGCACAGACAAT 59.766 40.000 0.00 0.00 0.00 2.71
4762 5084 4.565166 CGGATATTCTAAACGCACAGACAA 59.435 41.667 0.00 0.00 0.00 3.18
4763 5085 4.109766 CGGATATTCTAAACGCACAGACA 58.890 43.478 0.00 0.00 0.00 3.41
4764 5086 4.694012 CGGATATTCTAAACGCACAGAC 57.306 45.455 0.00 0.00 0.00 3.51
4771 5093 3.057734 GGTGAGGCGGATATTCTAAACG 58.942 50.000 0.00 0.00 0.00 3.60
4772 5094 3.057734 CGGTGAGGCGGATATTCTAAAC 58.942 50.000 0.00 0.00 0.00 2.01
4773 5095 2.696707 ACGGTGAGGCGGATATTCTAAA 59.303 45.455 0.00 0.00 0.00 1.85
4774 5096 2.035449 CACGGTGAGGCGGATATTCTAA 59.965 50.000 0.74 0.00 0.00 2.10
4775 5097 1.611977 CACGGTGAGGCGGATATTCTA 59.388 52.381 0.74 0.00 0.00 2.10
4776 5098 0.389391 CACGGTGAGGCGGATATTCT 59.611 55.000 0.74 0.00 0.00 2.40
4777 5099 0.104304 ACACGGTGAGGCGGATATTC 59.896 55.000 16.29 0.00 0.00 1.75
4778 5100 0.179084 CACACGGTGAGGCGGATATT 60.179 55.000 16.29 0.00 35.23 1.28
4779 5101 1.441729 CACACGGTGAGGCGGATAT 59.558 57.895 16.29 0.00 35.23 1.63
4780 5102 2.889617 CACACGGTGAGGCGGATA 59.110 61.111 16.29 0.00 35.23 2.59
4781 5103 4.760047 GCACACGGTGAGGCGGAT 62.760 66.667 16.29 0.00 35.23 4.18
4800 5122 4.753662 TCCGAGGTCGAGGTGGGG 62.754 72.222 0.00 0.00 43.02 4.96
4801 5123 3.141488 CTCCGAGGTCGAGGTGGG 61.141 72.222 0.00 0.00 43.02 4.61
4802 5124 2.361357 ACTCCGAGGTCGAGGTGG 60.361 66.667 0.00 0.00 43.02 4.61
4803 5125 1.524863 AACACTCCGAGGTCGAGGTG 61.525 60.000 16.98 16.98 43.02 4.00
4804 5126 1.228490 AACACTCCGAGGTCGAGGT 60.228 57.895 0.00 0.00 43.02 3.85
4805 5127 1.213013 CAACACTCCGAGGTCGAGG 59.787 63.158 0.00 0.00 43.02 4.63
4806 5128 0.811915 ATCAACACTCCGAGGTCGAG 59.188 55.000 0.00 0.00 43.02 4.04
4807 5129 0.809385 GATCAACACTCCGAGGTCGA 59.191 55.000 0.00 0.00 43.02 4.20
4808 5130 0.179134 GGATCAACACTCCGAGGTCG 60.179 60.000 0.00 0.00 39.44 4.79
4809 5131 1.187087 AGGATCAACACTCCGAGGTC 58.813 55.000 0.00 0.00 37.88 3.85
4810 5132 3.383162 AGGATCAACACTCCGAGGT 57.617 52.632 0.00 0.00 37.88 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.