Multiple sequence alignment - TraesCS5A01G396700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G396700 chr5A 100.000 4248 0 0 1 4248 591437802 591442049 0.000000e+00 7845
1 TraesCS5A01G396700 chr5A 90.295 474 31 6 1 467 591391995 591392460 1.310000e-169 606
2 TraesCS5A01G396700 chr5A 89.803 304 22 6 500 800 591392542 591392839 8.620000e-102 381
3 TraesCS5A01G396700 chr5B 86.397 2448 210 64 1604 3991 578535826 578538210 0.000000e+00 2562
4 TraesCS5A01G396700 chr5B 86.484 910 78 22 723 1614 578534911 578535793 0.000000e+00 957
5 TraesCS5A01G396700 chr5B 83.313 839 107 18 1912 2743 44679580 44680392 0.000000e+00 743
6 TraesCS5A01G396700 chr5B 85.371 499 38 17 1 495 578534184 578534651 6.390000e-133 484
7 TraesCS5A01G396700 chr5B 93.296 179 8 2 494 670 578534717 578534893 1.170000e-65 261
8 TraesCS5A01G396700 chr5D 86.804 2334 206 47 1696 3991 472233249 472235518 0.000000e+00 2510
9 TraesCS5A01G396700 chr5D 89.004 773 59 15 830 1598 472232330 472233080 0.000000e+00 933
10 TraesCS5A01G396700 chr5D 89.641 502 32 9 1 495 472231469 472231957 4.670000e-174 621
11 TraesCS5A01G396700 chr5D 89.888 267 25 2 2196 2462 303407552 303407816 4.070000e-90 342
12 TraesCS5A01G396700 chr5D 92.661 218 13 2 500 714 472232024 472232241 1.150000e-80 311
13 TraesCS5A01G396700 chr2B 84.062 778 100 16 1696 2462 37325658 37324894 0.000000e+00 728
14 TraesCS5A01G396700 chr2B 88.627 255 26 1 2491 2745 37324893 37324642 1.480000e-79 307
15 TraesCS5A01G396700 chr1B 83.362 589 71 18 1604 2170 533758784 533758201 1.750000e-143 520
16 TraesCS5A01G396700 chr1B 82.799 593 71 19 1604 2170 640478552 640477965 6.340000e-138 501
17 TraesCS5A01G396700 chr1B 93.750 96 6 0 2594 2689 540097988 540098083 1.230000e-30 145
18 TraesCS5A01G396700 chr6D 90.637 267 23 2 2196 2462 79884311 79884047 1.880000e-93 353
19 TraesCS5A01G396700 chr6D 94.175 103 6 0 2491 2593 79884046 79883944 1.580000e-34 158
20 TraesCS5A01G396700 chr3D 89.925 268 24 3 2196 2462 536420291 536420556 4.070000e-90 342
21 TraesCS5A01G396700 chr3D 89.888 267 24 3 2196 2462 19630324 19630587 1.460000e-89 340
22 TraesCS5A01G396700 chr3D 94.000 100 6 0 2491 2590 536420557 536420656 7.360000e-33 152
23 TraesCS5A01G396700 chr1A 82.507 343 42 12 1603 1930 551509348 551509687 6.950000e-73 285
24 TraesCS5A01G396700 chr2A 90.446 157 13 2 2306 2462 42807345 42807499 5.570000e-49 206
25 TraesCS5A01G396700 chr2A 92.157 102 8 0 2491 2592 42807500 42807601 1.230000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G396700 chr5A 591437802 591442049 4247 False 7845.00 7845 100.0000 1 4248 1 chr5A.!!$F1 4247
1 TraesCS5A01G396700 chr5A 591391995 591392839 844 False 493.50 606 90.0490 1 800 2 chr5A.!!$F2 799
2 TraesCS5A01G396700 chr5B 578534184 578538210 4026 False 1066.00 2562 87.8870 1 3991 4 chr5B.!!$F2 3990
3 TraesCS5A01G396700 chr5B 44679580 44680392 812 False 743.00 743 83.3130 1912 2743 1 chr5B.!!$F1 831
4 TraesCS5A01G396700 chr5D 472231469 472235518 4049 False 1093.75 2510 89.5275 1 3991 4 chr5D.!!$F2 3990
5 TraesCS5A01G396700 chr2B 37324642 37325658 1016 True 517.50 728 86.3445 1696 2745 2 chr2B.!!$R1 1049
6 TraesCS5A01G396700 chr1B 533758201 533758784 583 True 520.00 520 83.3620 1604 2170 1 chr1B.!!$R1 566
7 TraesCS5A01G396700 chr1B 640477965 640478552 587 True 501.00 501 82.7990 1604 2170 1 chr1B.!!$R2 566

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 416 0.249447 GCCTTGGGTTTGTTGTCTGC 60.249 55.0 0.0 0.0 0.00 4.26 F
1690 1891 0.040058 ACCATCCAAGCCTCATGCAA 59.960 50.0 0.0 0.0 44.83 4.08 F
2317 2551 0.458669 AGGCACCGTATTACCACTCG 59.541 55.0 0.0 0.0 0.00 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2226 2460 0.323629 TGTGGAAAGCTCTTACCCGG 59.676 55.0 0.0 0.0 0.00 5.73 R
2505 2743 0.037590 GTGTTGCTCCATACACCCCA 59.962 55.0 0.0 0.0 38.92 4.96 R
3902 4166 0.033366 AATTGTGCGGGCAAACTTCC 59.967 50.0 0.0 0.0 31.63 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 67 4.065088 TGAAGCACAACTACCATTGAGAC 58.935 43.478 0.00 0.00 33.57 3.36
89 93 9.740239 CACTGCTGCTAAAAATAATTGACATAT 57.260 29.630 0.00 0.00 0.00 1.78
134 138 7.218228 TCAGTTATGCATGAAAAATGACTGT 57.782 32.000 10.16 0.00 38.43 3.55
135 139 7.085746 TCAGTTATGCATGAAAAATGACTGTG 58.914 34.615 10.16 0.00 38.43 3.66
136 140 5.865552 AGTTATGCATGAAAAATGACTGTGC 59.134 36.000 10.16 0.00 0.00 4.57
137 141 3.029320 TGCATGAAAAATGACTGTGCC 57.971 42.857 0.00 0.00 0.00 5.01
173 177 5.425577 TCGACTAGATATGTCTGCACTTC 57.574 43.478 1.62 0.00 35.87 3.01
189 197 1.134340 ACTTCCAAGTTGTGCCGTGTA 60.134 47.619 1.45 0.00 35.21 2.90
192 200 1.202710 TCCAAGTTGTGCCGTGTACAT 60.203 47.619 0.00 0.00 0.00 2.29
197 205 3.259064 AGTTGTGCCGTGTACATATGTC 58.741 45.455 12.68 5.06 0.00 3.06
202 210 2.944349 TGCCGTGTACATATGTCGACTA 59.056 45.455 17.92 7.13 0.00 2.59
212 220 1.693627 ATGTCGACTAGGCCCTACAG 58.306 55.000 17.92 0.00 0.00 2.74
217 225 3.132467 GTCGACTAGGCCCTACAGAAAAT 59.868 47.826 8.70 0.00 0.00 1.82
253 261 2.599578 AGCTTGTTGGCAGCCTGG 60.600 61.111 14.15 0.00 34.17 4.45
260 268 0.752658 GTTGGCAGCCTGGAACTTTT 59.247 50.000 14.15 0.00 0.00 2.27
271 279 5.538433 AGCCTGGAACTTTTTGCTAAACATA 59.462 36.000 0.00 0.00 0.00 2.29
273 281 6.516693 GCCTGGAACTTTTTGCTAAACATAGT 60.517 38.462 0.00 0.00 0.00 2.12
274 282 7.433680 CCTGGAACTTTTTGCTAAACATAGTT 58.566 34.615 8.34 8.34 31.38 2.24
275 283 7.595130 CCTGGAACTTTTTGCTAAACATAGTTC 59.405 37.037 19.61 19.61 38.98 3.01
276 284 8.232913 TGGAACTTTTTGCTAAACATAGTTCT 57.767 30.769 23.46 3.58 39.30 3.01
321 329 2.800250 ACCCTCTCTTGATTTTGGCTG 58.200 47.619 0.00 0.00 0.00 4.85
344 352 2.255770 AGTTGCCCTAGTCTTAGCCT 57.744 50.000 0.00 0.00 0.00 4.58
372 380 2.038820 TCTGCACACTGATCATTGTGGA 59.961 45.455 34.06 31.83 40.83 4.02
374 382 1.470098 GCACACTGATCATTGTGGACC 59.530 52.381 34.06 20.89 40.83 4.46
401 409 2.354902 GCATCTGCCTTGGGTTTGT 58.645 52.632 0.00 0.00 34.31 2.83
408 416 0.249447 GCCTTGGGTTTGTTGTCTGC 60.249 55.000 0.00 0.00 0.00 4.26
422 430 1.202348 TGTCTGCTGCGCTTCTATCTC 60.202 52.381 9.73 0.00 0.00 2.75
427 435 2.131183 GCTGCGCTTCTATCTCGAATT 58.869 47.619 9.73 0.00 0.00 2.17
453 461 7.505258 TGGCATTTGTCTATTGTAGCACTATA 58.495 34.615 0.00 0.00 0.00 1.31
454 462 8.156820 TGGCATTTGTCTATTGTAGCACTATAT 58.843 33.333 0.00 0.00 0.00 0.86
455 463 8.446273 GGCATTTGTCTATTGTAGCACTATATG 58.554 37.037 0.00 0.00 0.00 1.78
456 464 8.446273 GCATTTGTCTATTGTAGCACTATATGG 58.554 37.037 0.00 0.00 0.00 2.74
457 465 9.494271 CATTTGTCTATTGTAGCACTATATGGT 57.506 33.333 0.00 0.00 43.10 3.55
459 467 7.833285 TGTCTATTGTAGCACTATATGGTCA 57.167 36.000 0.00 0.00 40.36 4.02
460 468 8.422577 TGTCTATTGTAGCACTATATGGTCAT 57.577 34.615 0.00 0.00 40.36 3.06
461 469 8.870116 TGTCTATTGTAGCACTATATGGTCATT 58.130 33.333 0.00 0.00 40.36 2.57
462 470 9.144747 GTCTATTGTAGCACTATATGGTCATTG 57.855 37.037 0.00 0.00 40.36 2.82
463 471 8.314021 TCTATTGTAGCACTATATGGTCATTGG 58.686 37.037 0.00 0.00 40.36 3.16
464 472 4.641396 TGTAGCACTATATGGTCATTGGC 58.359 43.478 0.00 0.00 40.36 4.52
465 473 2.771089 AGCACTATATGGTCATTGGCG 58.229 47.619 0.00 0.00 31.82 5.69
466 474 2.104792 AGCACTATATGGTCATTGGCGT 59.895 45.455 0.00 0.00 31.82 5.68
467 475 2.878406 GCACTATATGGTCATTGGCGTT 59.122 45.455 0.00 0.00 0.00 4.84
468 476 3.315191 GCACTATATGGTCATTGGCGTTT 59.685 43.478 0.00 0.00 0.00 3.60
470 478 4.574421 CACTATATGGTCATTGGCGTTTCA 59.426 41.667 0.00 0.00 0.00 2.69
476 486 1.062587 GTCATTGGCGTTTCATCCTCG 59.937 52.381 0.00 0.00 0.00 4.63
489 499 0.526662 ATCCTCGCGTCTCTTTTCGT 59.473 50.000 5.77 0.00 0.00 3.85
495 505 3.829948 TCGCGTCTCTTTTCGTTTCTAT 58.170 40.909 5.77 0.00 0.00 1.98
496 506 4.973396 TCGCGTCTCTTTTCGTTTCTATA 58.027 39.130 5.77 0.00 0.00 1.31
497 507 5.393124 TCGCGTCTCTTTTCGTTTCTATAA 58.607 37.500 5.77 0.00 0.00 0.98
498 508 5.510674 TCGCGTCTCTTTTCGTTTCTATAAG 59.489 40.000 5.77 0.00 0.00 1.73
527 602 2.584791 GCATGTGCTAGTCCGTTTTTG 58.415 47.619 0.00 0.00 38.21 2.44
528 603 2.668279 GCATGTGCTAGTCCGTTTTTGG 60.668 50.000 0.00 0.00 38.21 3.28
532 609 3.560896 TGTGCTAGTCCGTTTTTGGTAAC 59.439 43.478 0.00 0.00 0.00 2.50
549 626 4.411540 TGGTAACCAGTTAACACCCTTGTA 59.588 41.667 8.61 0.00 37.79 2.41
554 631 5.067954 ACCAGTTAACACCCTTGTATGTTC 58.932 41.667 8.61 0.00 39.67 3.18
572 649 3.279434 GTTCTGTTTCTGTTGGTCAGGT 58.721 45.455 0.00 0.00 43.76 4.00
628 705 2.002505 TGCGGGATTCCAAAAGGAAA 57.997 45.000 4.80 0.00 0.00 3.13
682 759 1.078710 AGACCGGTCCAGCCTACTT 59.921 57.895 30.82 6.14 34.25 2.24
692 769 3.995048 GTCCAGCCTACTTCTTGTACAAC 59.005 47.826 3.59 0.00 0.00 3.32
698 775 7.097192 CAGCCTACTTCTTGTACAACTAATCA 58.903 38.462 3.59 0.00 0.00 2.57
706 784 3.000041 TGTACAACTAATCAAGCCTGCG 59.000 45.455 0.00 0.00 0.00 5.18
714 792 0.460987 ATCAAGCCTGCGACTGTAGC 60.461 55.000 5.91 5.91 0.00 3.58
716 794 2.286523 AAGCCTGCGACTGTAGCCT 61.287 57.895 10.39 0.00 0.00 4.58
720 798 3.075005 TGCGACTGTAGCCTCCCC 61.075 66.667 10.39 0.00 0.00 4.81
751 829 3.724914 GAGCCGGGCAGAGTAGCAC 62.725 68.421 23.09 0.00 35.83 4.40
769 847 3.897325 GCACTCATGCCATCATATGTTG 58.103 45.455 1.90 4.67 46.97 3.33
800 878 7.863375 GTGTTTTGTTGTATGTATGTTTAGGCA 59.137 33.333 0.00 0.00 0.00 4.75
803 881 9.632807 TTTTGTTGTATGTATGTTTAGGCATTC 57.367 29.630 0.00 0.00 0.00 2.67
804 882 7.929941 TGTTGTATGTATGTTTAGGCATTCA 57.070 32.000 0.00 0.00 32.29 2.57
825 923 7.585579 TTCATGCCATCTTTTGATTGCTATA 57.414 32.000 0.00 0.00 44.88 1.31
850 955 1.656441 GTGTGCCTTGCCTTGACTG 59.344 57.895 0.00 0.00 0.00 3.51
857 962 0.595095 CTTGCCTTGACTGGAGCAAC 59.405 55.000 0.00 0.00 40.13 4.17
858 963 1.165907 TTGCCTTGACTGGAGCAACG 61.166 55.000 0.00 0.00 40.13 4.10
859 964 1.301716 GCCTTGACTGGAGCAACGA 60.302 57.895 0.00 0.00 0.00 3.85
860 965 0.674895 GCCTTGACTGGAGCAACGAT 60.675 55.000 0.00 0.00 0.00 3.73
862 967 1.466167 CCTTGACTGGAGCAACGATTG 59.534 52.381 0.00 0.00 0.00 2.67
863 968 2.146342 CTTGACTGGAGCAACGATTGT 58.854 47.619 0.00 0.00 0.00 2.71
864 969 3.325870 CTTGACTGGAGCAACGATTGTA 58.674 45.455 0.00 0.00 0.00 2.41
865 970 2.959516 TGACTGGAGCAACGATTGTAG 58.040 47.619 0.00 0.00 0.00 2.74
867 972 3.508402 TGACTGGAGCAACGATTGTAGTA 59.492 43.478 0.00 0.00 0.00 1.82
868 973 4.159693 TGACTGGAGCAACGATTGTAGTAT 59.840 41.667 0.00 0.00 0.00 2.12
869 974 5.086104 ACTGGAGCAACGATTGTAGTATT 57.914 39.130 0.00 0.00 0.00 1.89
870 975 5.488341 ACTGGAGCAACGATTGTAGTATTT 58.512 37.500 0.00 0.00 0.00 1.40
871 976 5.938125 ACTGGAGCAACGATTGTAGTATTTT 59.062 36.000 0.00 0.00 0.00 1.82
872 977 7.101054 ACTGGAGCAACGATTGTAGTATTTTA 58.899 34.615 0.00 0.00 0.00 1.52
873 978 7.769044 ACTGGAGCAACGATTGTAGTATTTTAT 59.231 33.333 0.00 0.00 0.00 1.40
874 979 9.256477 CTGGAGCAACGATTGTAGTATTTTATA 57.744 33.333 0.00 0.00 0.00 0.98
875 980 9.256477 TGGAGCAACGATTGTAGTATTTTATAG 57.744 33.333 0.00 0.00 0.00 1.31
876 981 9.257651 GGAGCAACGATTGTAGTATTTTATAGT 57.742 33.333 0.00 0.00 0.00 2.12
906 1011 4.071961 TGCAGTTGTGTAGAGTTGTGAT 57.928 40.909 0.00 0.00 0.00 3.06
950 1055 1.203441 TGGAGCTTGATCCTGCAGGT 61.203 55.000 31.58 19.20 40.29 4.00
964 1069 2.415697 GCAGGTGCAACGTTGTATTT 57.584 45.000 27.78 13.81 41.59 1.40
965 1070 2.738135 GCAGGTGCAACGTTGTATTTT 58.262 42.857 27.78 11.47 41.59 1.82
966 1071 3.120041 GCAGGTGCAACGTTGTATTTTT 58.880 40.909 27.78 9.16 41.59 1.94
967 1072 4.291783 GCAGGTGCAACGTTGTATTTTTA 58.708 39.130 27.78 5.13 41.59 1.52
972 1077 7.381139 CAGGTGCAACGTTGTATTTTTATTTCT 59.619 33.333 27.78 9.34 38.12 2.52
1017 1128 8.494016 AACTGCATATGTTAGAAGTAGGAAAC 57.506 34.615 13.74 0.00 0.00 2.78
1019 1130 6.636705 TGCATATGTTAGAAGTAGGAAACGT 58.363 36.000 4.29 0.00 0.00 3.99
1026 1142 6.019640 TGTTAGAAGTAGGAAACGTGAAAACG 60.020 38.462 0.00 0.00 39.31 3.60
1052 1168 2.139917 TGCCATGGCGAATACGTATTC 58.860 47.619 30.14 30.14 45.51 1.75
1053 1169 1.463444 GCCATGGCGAATACGTATTCC 59.537 52.381 32.29 25.70 39.04 3.01
1135 1251 0.108567 ACGCAAAAACACCAACACCC 60.109 50.000 0.00 0.00 0.00 4.61
1179 1303 2.046314 CATGGCGGAAACCCTCGT 60.046 61.111 0.00 0.00 0.00 4.18
1444 1568 2.514582 TCCGCCCTTTATAATCCCCAAA 59.485 45.455 0.00 0.00 0.00 3.28
1467 1591 4.101448 CCTGCTTCCGGGTCCCTG 62.101 72.222 6.29 0.00 32.47 4.45
1471 1595 2.269241 CTTCCGGGTCCCTGCTTC 59.731 66.667 6.29 0.00 0.00 3.86
1478 1602 0.744771 GGGTCCCTGCTTCGCTTAAG 60.745 60.000 0.00 0.00 38.32 1.85
1539 1668 3.260483 CAGGAGATCAGCACGCGC 61.260 66.667 5.73 0.00 38.99 6.86
1598 1727 2.033801 GCCTCATGCAATCGTAATGCTT 59.966 45.455 0.00 2.94 44.14 3.91
1600 1729 3.538780 CTCATGCAATCGTAATGCTTCG 58.461 45.455 0.00 0.00 44.14 3.79
1602 1731 1.732941 TGCAATCGTAATGCTTCGGT 58.267 45.000 10.24 0.00 44.14 4.69
1618 1819 4.689345 GCTTCGGTGTTACTATGTTCACTT 59.311 41.667 0.00 0.00 0.00 3.16
1619 1820 5.389516 GCTTCGGTGTTACTATGTTCACTTG 60.390 44.000 0.00 0.00 0.00 3.16
1679 1880 2.367894 TGCAAGCATTTTGACCATCCAA 59.632 40.909 0.00 0.00 0.00 3.53
1684 1885 2.417787 GCATTTTGACCATCCAAGCCTC 60.418 50.000 0.00 0.00 0.00 4.70
1687 1888 2.133281 TTGACCATCCAAGCCTCATG 57.867 50.000 0.00 0.00 0.00 3.07
1690 1891 0.040058 ACCATCCAAGCCTCATGCAA 59.960 50.000 0.00 0.00 44.83 4.08
1691 1892 1.187974 CCATCCAAGCCTCATGCAAA 58.812 50.000 0.00 0.00 44.83 3.68
1693 1894 2.483013 CCATCCAAGCCTCATGCAAATG 60.483 50.000 0.00 0.00 44.83 2.32
1700 1916 2.961062 AGCCTCATGCAAATGTTATCCC 59.039 45.455 0.00 0.00 44.83 3.85
1701 1917 2.694628 GCCTCATGCAAATGTTATCCCA 59.305 45.455 0.00 0.00 40.77 4.37
1707 1923 2.311542 TGCAAATGTTATCCCAGGACCT 59.688 45.455 0.00 0.00 0.00 3.85
1710 1926 4.344104 CAAATGTTATCCCAGGACCTTGT 58.656 43.478 0.00 0.00 0.00 3.16
1713 1929 3.256704 TGTTATCCCAGGACCTTGTTCT 58.743 45.455 0.00 0.00 0.00 3.01
1854 2073 4.632153 AGACCAACATGTTCACTGTAGAC 58.368 43.478 8.48 0.00 0.00 2.59
1886 2105 2.509964 AGGTGGACTGAAGTTCTTGGTT 59.490 45.455 4.17 0.00 0.00 3.67
1930 2149 3.434299 GGTTCCGAGCATTTTTAACGAGA 59.566 43.478 0.00 0.00 0.00 4.04
1961 2184 2.508526 AGTGCACAGATTGGGTTCTTC 58.491 47.619 21.04 0.00 0.00 2.87
2060 2283 5.564455 CGGAGATGATGATACTGGTGAAGAG 60.564 48.000 0.00 0.00 0.00 2.85
2077 2300 4.847512 TGAAGAGTCCCCCAAGTAAACATA 59.152 41.667 0.00 0.00 0.00 2.29
2078 2301 5.491078 TGAAGAGTCCCCCAAGTAAACATAT 59.509 40.000 0.00 0.00 0.00 1.78
2079 2302 6.674861 TGAAGAGTCCCCCAAGTAAACATATA 59.325 38.462 0.00 0.00 0.00 0.86
2081 2304 7.707467 AGAGTCCCCCAAGTAAACATATATT 57.293 36.000 0.00 0.00 0.00 1.28
2082 2305 8.808240 AGAGTCCCCCAAGTAAACATATATTA 57.192 34.615 0.00 0.00 0.00 0.98
2083 2306 9.406662 AGAGTCCCCCAAGTAAACATATATTAT 57.593 33.333 0.00 0.00 0.00 1.28
2084 2307 9.668497 GAGTCCCCCAAGTAAACATATATTATC 57.332 37.037 0.00 0.00 0.00 1.75
2085 2308 8.612145 AGTCCCCCAAGTAAACATATATTATCC 58.388 37.037 0.00 0.00 0.00 2.59
2086 2309 8.387813 GTCCCCCAAGTAAACATATATTATCCA 58.612 37.037 0.00 0.00 0.00 3.41
2088 2311 9.768215 CCCCCAAGTAAACATATATTATCCATT 57.232 33.333 0.00 0.00 0.00 3.16
2226 2460 1.760192 ACTCTCTTGATGGCAATGGC 58.240 50.000 0.00 0.00 40.13 4.40
2308 2542 4.269183 TCATGAAAATCAAGGCACCGTAT 58.731 39.130 0.00 0.00 0.00 3.06
2317 2551 0.458669 AGGCACCGTATTACCACTCG 59.541 55.000 0.00 0.00 0.00 4.18
2330 2564 0.734253 CCACTCGCCGACTCTTCAAG 60.734 60.000 0.00 0.00 0.00 3.02
2332 2566 1.199327 CACTCGCCGACTCTTCAAGTA 59.801 52.381 0.00 0.00 38.74 2.24
2393 2627 5.475273 TCTTCGTATCGATGAACTTACGT 57.525 39.130 8.54 0.00 37.17 3.57
2401 2635 2.094906 CGATGAACTTACGTCAGGGTCA 60.095 50.000 1.20 4.95 0.00 4.02
2402 2636 3.428999 CGATGAACTTACGTCAGGGTCAT 60.429 47.826 14.51 14.51 0.00 3.06
2418 2652 7.343316 GTCAGGGTCATATGCTAAGATATACCT 59.657 40.741 0.00 0.00 0.00 3.08
2434 2668 9.628500 AAGATATACCTTTTATCCTTTGTCACC 57.372 33.333 0.00 0.00 0.00 4.02
2463 2701 3.189287 CCAGCAACGATAGGATAAATGCC 59.811 47.826 0.00 0.00 43.77 4.40
2496 2734 1.685224 GGAGGGCCATTCTGTGACA 59.315 57.895 6.18 0.00 0.00 3.58
2505 2743 3.808618 GCCATTCTGTGACAAAGAGGAGT 60.809 47.826 5.31 0.00 0.00 3.85
2523 2761 0.037590 GTGGGGTGTATGGAGCAACA 59.962 55.000 0.00 0.00 0.00 3.33
2550 2791 1.207329 GAGGCTGATACGGTTGTCCTT 59.793 52.381 0.00 0.00 0.00 3.36
2592 2833 6.662755 TGGTCAGCTGATTCAGGTATATTTT 58.337 36.000 21.47 0.00 40.40 1.82
2745 2988 3.120199 CGGACATCAACATCCTTGTGTTC 60.120 47.826 0.00 0.00 40.17 3.18
2746 2989 3.820467 GGACATCAACATCCTTGTGTTCA 59.180 43.478 0.00 0.00 40.17 3.18
2747 2990 4.460382 GGACATCAACATCCTTGTGTTCAT 59.540 41.667 0.00 0.00 40.17 2.57
2748 2991 5.047802 GGACATCAACATCCTTGTGTTCATT 60.048 40.000 0.00 0.00 40.17 2.57
2749 2992 6.017400 ACATCAACATCCTTGTGTTCATTC 57.983 37.500 0.00 0.00 40.17 2.67
2750 2993 5.771666 ACATCAACATCCTTGTGTTCATTCT 59.228 36.000 0.00 0.00 40.17 2.40
2751 2994 6.266103 ACATCAACATCCTTGTGTTCATTCTT 59.734 34.615 0.00 0.00 40.17 2.52
2752 2995 6.713762 TCAACATCCTTGTGTTCATTCTTT 57.286 33.333 0.00 0.00 40.17 2.52
2753 2996 7.815840 TCAACATCCTTGTGTTCATTCTTTA 57.184 32.000 0.00 0.00 40.17 1.85
2754 2997 8.408043 TCAACATCCTTGTGTTCATTCTTTAT 57.592 30.769 0.00 0.00 40.17 1.40
2755 2998 8.859090 TCAACATCCTTGTGTTCATTCTTTATT 58.141 29.630 0.00 0.00 40.17 1.40
2808 3051 7.989416 AAAATAATTTCTGGGTTAGACGACA 57.011 32.000 0.00 0.00 34.43 4.35
2813 3056 5.733620 TTTCTGGGTTAGACGACACTAAT 57.266 39.130 0.00 0.00 34.43 1.73
2814 3057 4.713824 TCTGGGTTAGACGACACTAATG 57.286 45.455 0.00 0.00 35.32 1.90
2854 3097 5.981088 ATTCAATGTCAAATGGTACTGCA 57.019 34.783 0.00 0.00 0.00 4.41
2869 3112 5.827797 TGGTACTGCAGAAGAAATGTTTTCT 59.172 36.000 23.35 0.00 34.09 2.52
3024 3267 3.130516 CACTGGACAGGAGTAGCGAATAA 59.869 47.826 4.14 0.00 0.00 1.40
3160 3403 3.505680 TGGAGTTTTGTTGGATGGAATCG 59.494 43.478 0.00 0.00 46.86 3.34
3214 3457 3.947132 CTCGGCTGGTCTGGCTGTG 62.947 68.421 0.00 0.00 37.35 3.66
3230 3473 1.534163 CTGTGTCGTCGACCTACTTCA 59.466 52.381 22.05 10.74 0.00 3.02
3259 3502 4.588951 ACCAAAGTATGAGTCAGTGAGTCA 59.411 41.667 28.40 28.40 44.61 3.41
3260 3503 5.167121 CCAAAGTATGAGTCAGTGAGTCAG 58.833 45.833 29.35 17.49 43.89 3.51
3265 3508 3.425162 TGAGTCAGTGAGTCAGAGCTA 57.575 47.619 23.93 3.20 37.13 3.32
3280 3523 8.854614 AGTCAGAGCTATTCTTTGTACAAAAT 57.145 30.769 20.89 14.88 32.41 1.82
3295 3538 7.881643 TGTACAAAATGTAATGCACCAATTC 57.118 32.000 0.00 0.00 34.21 2.17
3297 3540 7.598118 TGTACAAAATGTAATGCACCAATTCTG 59.402 33.333 0.00 0.00 34.21 3.02
3306 3549 2.294233 TGCACCAATTCTGTGAGCTTTC 59.706 45.455 8.47 0.00 35.74 2.62
3307 3550 2.294233 GCACCAATTCTGTGAGCTTTCA 59.706 45.455 8.47 0.00 35.74 2.69
3314 3557 7.025963 CCAATTCTGTGAGCTTTCAAGTAATC 58.974 38.462 0.00 0.00 0.00 1.75
3337 3580 1.691976 ACTGGCTAGTGCTGTTGTACA 59.308 47.619 0.13 0.00 39.59 2.90
3341 3584 3.074412 GGCTAGTGCTGTTGTACATTGT 58.926 45.455 0.00 0.00 39.59 2.71
3350 3593 6.359617 GTGCTGTTGTACATTGTTCAATACAC 59.640 38.462 11.34 14.12 36.21 2.90
3351 3594 6.262049 TGCTGTTGTACATTGTTCAATACACT 59.738 34.615 11.34 0.00 36.21 3.55
3416 3668 3.678056 TGAAAAGTATCGAGCTGGTGT 57.322 42.857 0.00 0.00 0.00 4.16
3426 3678 2.872245 TCGAGCTGGTGTTTCTTTCTTG 59.128 45.455 0.00 0.00 0.00 3.02
3438 3690 7.042725 GGTGTTTCTTTCTTGTTTGGCTAAATC 60.043 37.037 0.00 0.00 0.00 2.17
3441 3693 9.098355 GTTTCTTTCTTGTTTGGCTAAATCTTT 57.902 29.630 0.00 0.00 0.00 2.52
3465 3717 8.545229 TTTATTTGCATTCATAAACCAACTGG 57.455 30.769 0.00 0.00 42.17 4.00
3498 3751 8.789881 TTGTTATTTGGCATATAAATACACGC 57.210 30.769 11.22 0.22 31.68 5.34
3508 3761 8.943002 GGCATATAAATACACGCTAACCTTTAT 58.057 33.333 0.00 0.00 0.00 1.40
3529 3782 9.531942 CTTTATATTTGCATATTTGTCCTTGCA 57.468 29.630 0.00 0.00 42.90 4.08
3536 3789 4.622740 GCATATTTGTCCTTGCACTTTCAC 59.377 41.667 0.00 0.00 35.22 3.18
3549 3802 2.086869 ACTTTCACATGCCATCTTCGG 58.913 47.619 0.00 0.00 0.00 4.30
3554 3807 2.965147 TCACATGCCATCTTCGGATAGA 59.035 45.455 0.00 0.00 32.70 1.98
3568 3821 6.882140 TCTTCGGATAGAAATTGGTTTTGCTA 59.118 34.615 0.00 0.00 38.57 3.49
3569 3822 6.677781 TCGGATAGAAATTGGTTTTGCTAG 57.322 37.500 0.00 0.00 0.00 3.42
3578 3831 3.053831 TGGTTTTGCTAGCTACTGGAC 57.946 47.619 17.23 6.05 0.00 4.02
3581 3834 3.557264 GGTTTTGCTAGCTACTGGACTGT 60.557 47.826 17.23 0.00 0.00 3.55
3588 3841 1.480137 AGCTACTGGACTGTGATCTGC 59.520 52.381 0.00 0.00 0.00 4.26
3626 3885 2.190325 CGTGATGGTACGTTCCTCTC 57.810 55.000 12.78 9.56 39.13 3.20
3627 3886 1.471287 CGTGATGGTACGTTCCTCTCA 59.529 52.381 12.78 11.86 39.13 3.27
3628 3887 2.099263 CGTGATGGTACGTTCCTCTCAT 59.901 50.000 12.78 0.00 39.13 2.90
3629 3888 3.707793 GTGATGGTACGTTCCTCTCATC 58.292 50.000 12.78 7.43 33.65 2.92
3632 3891 4.466370 TGATGGTACGTTCCTCTCATCTTT 59.534 41.667 12.78 0.00 34.03 2.52
3633 3892 4.188247 TGGTACGTTCCTCTCATCTTTG 57.812 45.455 12.78 0.00 0.00 2.77
3637 3896 3.665190 ACGTTCCTCTCATCTTTGTTCC 58.335 45.455 0.00 0.00 0.00 3.62
3642 3901 6.371548 CGTTCCTCTCATCTTTGTTCCAAATA 59.628 38.462 0.00 0.00 0.00 1.40
3681 3943 2.239654 TGGTCAAGGAATGGAGTGGATC 59.760 50.000 0.00 0.00 0.00 3.36
3683 3945 3.117738 GGTCAAGGAATGGAGTGGATCAT 60.118 47.826 0.00 0.00 0.00 2.45
3685 3947 4.952335 GTCAAGGAATGGAGTGGATCATTT 59.048 41.667 0.00 0.00 34.18 2.32
3690 3952 6.018469 AGGAATGGAGTGGATCATTTGAAAA 58.982 36.000 0.00 0.00 34.18 2.29
3700 3962 6.655003 GTGGATCATTTGAAAACAGGTCTAGA 59.345 38.462 0.00 0.00 0.00 2.43
3702 3964 7.391554 TGGATCATTTGAAAACAGGTCTAGAAG 59.608 37.037 0.00 0.00 0.00 2.85
3707 3969 3.646162 TGAAAACAGGTCTAGAAGCTCCA 59.354 43.478 0.00 0.00 31.91 3.86
3710 3972 1.178276 CAGGTCTAGAAGCTCCACGT 58.822 55.000 0.00 0.00 31.91 4.49
3711 3973 1.133407 CAGGTCTAGAAGCTCCACGTC 59.867 57.143 0.00 0.00 31.91 4.34
3715 3977 1.884579 TCTAGAAGCTCCACGTCGTTT 59.115 47.619 0.00 0.00 0.00 3.60
3718 3980 1.338973 AGAAGCTCCACGTCGTTTGTA 59.661 47.619 0.00 0.00 0.00 2.41
3721 3983 1.862827 AGCTCCACGTCGTTTGTAAAC 59.137 47.619 0.00 0.00 35.59 2.01
3723 3985 2.030701 GCTCCACGTCGTTTGTAAACAA 59.969 45.455 0.00 0.00 38.81 2.83
3725 3987 4.787245 GCTCCACGTCGTTTGTAAACAAAT 60.787 41.667 11.17 0.00 46.12 2.32
3744 4006 0.961019 TGATGCCTTTGACAAGTGCC 59.039 50.000 8.11 0.00 0.00 5.01
3745 4007 1.251251 GATGCCTTTGACAAGTGCCT 58.749 50.000 8.11 0.03 0.00 4.75
3746 4008 1.615392 GATGCCTTTGACAAGTGCCTT 59.385 47.619 8.11 0.00 0.00 4.35
3747 4009 1.032014 TGCCTTTGACAAGTGCCTTC 58.968 50.000 8.11 0.00 0.00 3.46
3748 4010 1.322442 GCCTTTGACAAGTGCCTTCT 58.678 50.000 0.77 0.00 0.00 2.85
3749 4011 1.000938 GCCTTTGACAAGTGCCTTCTG 60.001 52.381 0.77 0.00 0.00 3.02
3750 4012 2.575532 CCTTTGACAAGTGCCTTCTGA 58.424 47.619 0.00 0.00 0.00 3.27
3751 4013 2.551459 CCTTTGACAAGTGCCTTCTGAG 59.449 50.000 0.00 0.00 0.00 3.35
3752 4014 3.470709 CTTTGACAAGTGCCTTCTGAGA 58.529 45.455 0.00 0.00 0.00 3.27
3753 4015 3.777106 TTGACAAGTGCCTTCTGAGAT 57.223 42.857 0.00 0.00 0.00 2.75
3754 4016 3.049708 TGACAAGTGCCTTCTGAGATG 57.950 47.619 0.00 0.00 0.00 2.90
3755 4017 2.634453 TGACAAGTGCCTTCTGAGATGA 59.366 45.455 0.00 0.00 0.00 2.92
3756 4018 3.262660 TGACAAGTGCCTTCTGAGATGAT 59.737 43.478 0.00 0.00 0.00 2.45
3757 4019 4.260170 GACAAGTGCCTTCTGAGATGATT 58.740 43.478 0.00 0.00 0.00 2.57
3758 4020 4.660168 ACAAGTGCCTTCTGAGATGATTT 58.340 39.130 0.00 0.00 0.00 2.17
3759 4021 5.809001 ACAAGTGCCTTCTGAGATGATTTA 58.191 37.500 0.00 0.00 0.00 1.40
3760 4022 6.421485 ACAAGTGCCTTCTGAGATGATTTAT 58.579 36.000 0.00 0.00 0.00 1.40
3761 4023 6.888632 ACAAGTGCCTTCTGAGATGATTTATT 59.111 34.615 0.00 0.00 0.00 1.40
3762 4024 8.049117 ACAAGTGCCTTCTGAGATGATTTATTA 58.951 33.333 0.00 0.00 0.00 0.98
3763 4025 8.341173 CAAGTGCCTTCTGAGATGATTTATTAC 58.659 37.037 0.00 0.00 0.00 1.89
3764 4026 7.568349 AGTGCCTTCTGAGATGATTTATTACA 58.432 34.615 0.00 0.00 0.00 2.41
3765 4027 8.216423 AGTGCCTTCTGAGATGATTTATTACAT 58.784 33.333 0.00 0.00 0.00 2.29
3766 4028 8.844244 GTGCCTTCTGAGATGATTTATTACATT 58.156 33.333 0.00 0.00 0.00 2.71
3767 4029 8.843262 TGCCTTCTGAGATGATTTATTACATTG 58.157 33.333 0.00 0.00 0.00 2.82
3768 4030 8.844244 GCCTTCTGAGATGATTTATTACATTGT 58.156 33.333 0.00 0.00 0.00 2.71
3870 4132 3.849563 ACTACTTGCACCTACCAAACA 57.150 42.857 0.00 0.00 0.00 2.83
3875 4137 6.773685 ACTACTTGCACCTACCAAACAAAATA 59.226 34.615 0.00 0.00 0.00 1.40
3876 4138 6.664428 ACTTGCACCTACCAAACAAAATAT 57.336 33.333 0.00 0.00 0.00 1.28
3877 4139 7.768807 ACTTGCACCTACCAAACAAAATATA 57.231 32.000 0.00 0.00 0.00 0.86
3879 4141 8.811994 ACTTGCACCTACCAAACAAAATATATT 58.188 29.630 0.00 0.00 0.00 1.28
3881 4143 8.994429 TGCACCTACCAAACAAAATATATTTG 57.006 30.769 11.42 8.36 33.90 2.32
3911 4175 3.063588 GTCGTAATGCTAGGGAAGTTTGC 59.936 47.826 0.00 0.00 0.00 3.68
3913 4177 1.852633 AATGCTAGGGAAGTTTGCCC 58.147 50.000 0.00 0.00 46.40 5.36
3924 4188 1.039856 AGTTTGCCCGCACAATTTCT 58.960 45.000 0.00 0.00 0.00 2.52
3925 4189 2.235016 AGTTTGCCCGCACAATTTCTA 58.765 42.857 0.00 0.00 0.00 2.10
3930 4194 0.802494 CCCGCACAATTTCTAAGCGT 59.198 50.000 0.00 0.00 46.26 5.07
3931 4195 1.465689 CCCGCACAATTTCTAAGCGTG 60.466 52.381 0.00 0.00 46.26 5.34
3932 4196 1.463056 CCGCACAATTTCTAAGCGTGA 59.537 47.619 0.00 0.00 46.26 4.35
3934 4198 3.308595 CCGCACAATTTCTAAGCGTGATA 59.691 43.478 0.00 0.00 46.26 2.15
3967 4231 4.342665 ACAGAGGTACTAGAAGCTAATGCC 59.657 45.833 0.00 0.00 41.55 4.40
3975 4239 5.363939 ACTAGAAGCTAATGCCTCATGAAC 58.636 41.667 0.00 0.00 40.80 3.18
3977 4241 1.959042 AGCTAATGCCTCATGAACGG 58.041 50.000 0.00 0.00 40.80 4.44
3986 4250 2.436417 CCTCATGAACGGTGGATTTGT 58.564 47.619 0.00 0.00 0.00 2.83
3991 4255 6.017934 CCTCATGAACGGTGGATTTGTATAAG 60.018 42.308 0.00 0.00 0.00 1.73
3992 4256 5.820423 TCATGAACGGTGGATTTGTATAAGG 59.180 40.000 0.00 0.00 0.00 2.69
3993 4257 5.423704 TGAACGGTGGATTTGTATAAGGA 57.576 39.130 0.00 0.00 0.00 3.36
3994 4258 5.424757 TGAACGGTGGATTTGTATAAGGAG 58.575 41.667 0.00 0.00 0.00 3.69
3995 4259 3.805207 ACGGTGGATTTGTATAAGGAGC 58.195 45.455 0.00 0.00 0.00 4.70
3996 4260 3.454812 ACGGTGGATTTGTATAAGGAGCT 59.545 43.478 0.00 0.00 0.00 4.09
3997 4261 4.080526 ACGGTGGATTTGTATAAGGAGCTT 60.081 41.667 0.00 0.00 0.00 3.74
3998 4262 4.273480 CGGTGGATTTGTATAAGGAGCTTG 59.727 45.833 0.00 0.00 0.00 4.01
3999 4263 5.437060 GGTGGATTTGTATAAGGAGCTTGA 58.563 41.667 0.00 0.00 0.00 3.02
4000 4264 5.885912 GGTGGATTTGTATAAGGAGCTTGAA 59.114 40.000 0.00 0.00 0.00 2.69
4001 4265 6.547510 GGTGGATTTGTATAAGGAGCTTGAAT 59.452 38.462 0.00 0.00 0.00 2.57
4002 4266 7.068716 GGTGGATTTGTATAAGGAGCTTGAATT 59.931 37.037 0.00 0.00 0.00 2.17
4003 4267 8.131731 GTGGATTTGTATAAGGAGCTTGAATTC 58.868 37.037 0.00 0.00 0.00 2.17
4004 4268 8.055181 TGGATTTGTATAAGGAGCTTGAATTCT 58.945 33.333 7.05 0.00 0.00 2.40
4005 4269 8.348507 GGATTTGTATAAGGAGCTTGAATTCTG 58.651 37.037 7.05 1.00 0.00 3.02
4006 4270 8.814038 ATTTGTATAAGGAGCTTGAATTCTGT 57.186 30.769 7.05 0.00 0.00 3.41
4007 4271 7.849804 TTGTATAAGGAGCTTGAATTCTGTC 57.150 36.000 7.05 0.00 0.00 3.51
4008 4272 7.187824 TGTATAAGGAGCTTGAATTCTGTCT 57.812 36.000 7.05 0.54 0.00 3.41
4009 4273 7.268586 TGTATAAGGAGCTTGAATTCTGTCTC 58.731 38.462 7.05 9.38 0.00 3.36
4010 4274 4.630644 AAGGAGCTTGAATTCTGTCTCA 57.369 40.909 7.05 0.00 0.00 3.27
4011 4275 4.630644 AGGAGCTTGAATTCTGTCTCAA 57.369 40.909 7.05 0.00 0.00 3.02
4012 4276 4.978099 AGGAGCTTGAATTCTGTCTCAAA 58.022 39.130 7.05 0.00 31.41 2.69
4013 4277 5.380043 AGGAGCTTGAATTCTGTCTCAAAA 58.620 37.500 7.05 0.00 31.41 2.44
4014 4278 5.240403 AGGAGCTTGAATTCTGTCTCAAAAC 59.760 40.000 7.05 0.00 31.41 2.43
4015 4279 5.240403 GGAGCTTGAATTCTGTCTCAAAACT 59.760 40.000 7.05 0.00 31.41 2.66
4016 4280 6.069684 AGCTTGAATTCTGTCTCAAAACTG 57.930 37.500 7.05 0.00 31.41 3.16
4017 4281 5.824624 AGCTTGAATTCTGTCTCAAAACTGA 59.175 36.000 7.05 0.00 31.41 3.41
4018 4282 6.319658 AGCTTGAATTCTGTCTCAAAACTGAA 59.680 34.615 7.05 0.00 40.11 3.02
4019 4283 6.416161 GCTTGAATTCTGTCTCAAAACTGAAC 59.584 38.462 7.05 0.00 39.10 3.18
4020 4284 7.389803 TTGAATTCTGTCTCAAAACTGAACA 57.610 32.000 7.05 0.00 39.10 3.18
4021 4285 6.785191 TGAATTCTGTCTCAAAACTGAACAC 58.215 36.000 7.05 0.00 39.10 3.32
4022 4286 5.757850 ATTCTGTCTCAAAACTGAACACC 57.242 39.130 0.00 0.00 39.10 4.16
4023 4287 4.214986 TCTGTCTCAAAACTGAACACCA 57.785 40.909 0.00 0.00 0.00 4.17
4024 4288 4.780815 TCTGTCTCAAAACTGAACACCAT 58.219 39.130 0.00 0.00 0.00 3.55
4025 4289 5.924356 TCTGTCTCAAAACTGAACACCATA 58.076 37.500 0.00 0.00 0.00 2.74
4026 4290 6.353323 TCTGTCTCAAAACTGAACACCATAA 58.647 36.000 0.00 0.00 0.00 1.90
4027 4291 6.998074 TCTGTCTCAAAACTGAACACCATAAT 59.002 34.615 0.00 0.00 0.00 1.28
4028 4292 6.969366 TGTCTCAAAACTGAACACCATAATG 58.031 36.000 0.00 0.00 0.00 1.90
4029 4293 6.545666 TGTCTCAAAACTGAACACCATAATGT 59.454 34.615 0.00 0.00 0.00 2.71
4030 4294 7.078228 GTCTCAAAACTGAACACCATAATGTC 58.922 38.462 0.00 0.00 30.55 3.06
4031 4295 5.996219 TCAAAACTGAACACCATAATGTCG 58.004 37.500 0.00 0.00 30.55 4.35
4032 4296 4.419522 AAACTGAACACCATAATGTCGC 57.580 40.909 0.00 0.00 30.55 5.19
4033 4297 3.334583 ACTGAACACCATAATGTCGCT 57.665 42.857 0.00 0.00 30.55 4.93
4034 4298 4.465632 ACTGAACACCATAATGTCGCTA 57.534 40.909 0.00 0.00 30.55 4.26
4035 4299 4.181578 ACTGAACACCATAATGTCGCTAC 58.818 43.478 0.00 0.00 30.55 3.58
4036 4300 4.081642 ACTGAACACCATAATGTCGCTACT 60.082 41.667 0.00 0.00 30.55 2.57
4037 4301 4.180817 TGAACACCATAATGTCGCTACTG 58.819 43.478 0.00 0.00 30.55 2.74
4038 4302 2.550978 ACACCATAATGTCGCTACTGC 58.449 47.619 0.00 0.00 0.00 4.40
4039 4303 2.093711 ACACCATAATGTCGCTACTGCA 60.094 45.455 0.00 0.00 39.64 4.41
4040 4304 2.935849 CACCATAATGTCGCTACTGCAA 59.064 45.455 0.00 0.00 39.64 4.08
4041 4305 3.373748 CACCATAATGTCGCTACTGCAAA 59.626 43.478 0.00 0.00 39.64 3.68
4042 4306 3.623060 ACCATAATGTCGCTACTGCAAAG 59.377 43.478 0.00 0.00 39.64 2.77
4043 4307 3.546815 CCATAATGTCGCTACTGCAAAGC 60.547 47.826 10.07 10.07 39.64 3.51
4044 4308 1.813513 AATGTCGCTACTGCAAAGCT 58.186 45.000 16.30 0.00 37.85 3.74
4045 4309 1.813513 ATGTCGCTACTGCAAAGCTT 58.186 45.000 16.30 0.00 37.85 3.74
4046 4310 2.448926 TGTCGCTACTGCAAAGCTTA 57.551 45.000 16.30 4.43 37.85 3.09
4047 4311 2.972625 TGTCGCTACTGCAAAGCTTAT 58.027 42.857 16.30 0.00 37.85 1.73
4048 4312 2.930040 TGTCGCTACTGCAAAGCTTATC 59.070 45.455 16.30 0.00 37.85 1.75
4049 4313 3.190874 GTCGCTACTGCAAAGCTTATCT 58.809 45.455 16.30 0.00 37.85 1.98
4050 4314 3.244111 GTCGCTACTGCAAAGCTTATCTC 59.756 47.826 16.30 0.00 37.85 2.75
4051 4315 2.541762 CGCTACTGCAAAGCTTATCTCC 59.458 50.000 16.30 0.00 37.85 3.71
4052 4316 2.875317 GCTACTGCAAAGCTTATCTCCC 59.125 50.000 12.35 0.00 39.41 4.30
4053 4317 2.426842 ACTGCAAAGCTTATCTCCCC 57.573 50.000 0.00 0.00 0.00 4.81
4054 4318 1.303309 CTGCAAAGCTTATCTCCCCG 58.697 55.000 0.00 0.00 0.00 5.73
4055 4319 0.618458 TGCAAAGCTTATCTCCCCGT 59.382 50.000 0.00 0.00 0.00 5.28
4056 4320 1.017387 GCAAAGCTTATCTCCCCGTG 58.983 55.000 0.00 0.00 0.00 4.94
4057 4321 1.406887 GCAAAGCTTATCTCCCCGTGA 60.407 52.381 0.00 0.00 0.00 4.35
4058 4322 2.280628 CAAAGCTTATCTCCCCGTGAC 58.719 52.381 0.00 0.00 0.00 3.67
4059 4323 1.568504 AAGCTTATCTCCCCGTGACA 58.431 50.000 0.00 0.00 0.00 3.58
4060 4324 1.115467 AGCTTATCTCCCCGTGACAG 58.885 55.000 0.00 0.00 0.00 3.51
4061 4325 1.112113 GCTTATCTCCCCGTGACAGA 58.888 55.000 0.00 0.00 0.00 3.41
4062 4326 1.480954 GCTTATCTCCCCGTGACAGAA 59.519 52.381 0.00 0.00 0.00 3.02
4063 4327 2.093658 GCTTATCTCCCCGTGACAGAAA 60.094 50.000 0.00 0.00 0.00 2.52
4064 4328 3.432326 GCTTATCTCCCCGTGACAGAAAT 60.432 47.826 0.00 0.00 0.00 2.17
4065 4329 2.990066 ATCTCCCCGTGACAGAAATC 57.010 50.000 0.00 0.00 0.00 2.17
4066 4330 0.902531 TCTCCCCGTGACAGAAATCC 59.097 55.000 0.00 0.00 0.00 3.01
4067 4331 0.613260 CTCCCCGTGACAGAAATCCA 59.387 55.000 0.00 0.00 0.00 3.41
4068 4332 0.613260 TCCCCGTGACAGAAATCCAG 59.387 55.000 0.00 0.00 0.00 3.86
4069 4333 0.392998 CCCCGTGACAGAAATCCAGG 60.393 60.000 0.00 0.00 0.00 4.45
4070 4334 0.613260 CCCGTGACAGAAATCCAGGA 59.387 55.000 0.00 0.00 0.00 3.86
4071 4335 1.003118 CCCGTGACAGAAATCCAGGAA 59.997 52.381 0.00 0.00 0.00 3.36
4072 4336 2.356125 CCCGTGACAGAAATCCAGGAAT 60.356 50.000 0.00 0.00 0.00 3.01
4073 4337 3.118408 CCCGTGACAGAAATCCAGGAATA 60.118 47.826 0.00 0.00 0.00 1.75
4074 4338 4.444876 CCCGTGACAGAAATCCAGGAATAT 60.445 45.833 0.00 0.00 0.00 1.28
4075 4339 5.126067 CCGTGACAGAAATCCAGGAATATT 58.874 41.667 0.00 0.00 0.00 1.28
4076 4340 5.590259 CCGTGACAGAAATCCAGGAATATTT 59.410 40.000 0.00 0.00 0.00 1.40
4077 4341 6.458751 CCGTGACAGAAATCCAGGAATATTTG 60.459 42.308 0.00 0.00 0.00 2.32
4078 4342 6.458751 CGTGACAGAAATCCAGGAATATTTGG 60.459 42.308 0.00 0.31 35.74 3.28
4079 4343 6.378280 GTGACAGAAATCCAGGAATATTTGGT 59.622 38.462 6.15 0.00 35.89 3.67
4080 4344 6.603201 TGACAGAAATCCAGGAATATTTGGTC 59.397 38.462 6.15 1.51 35.89 4.02
4081 4345 6.735556 ACAGAAATCCAGGAATATTTGGTCT 58.264 36.000 6.15 0.58 35.89 3.85
4082 4346 6.604795 ACAGAAATCCAGGAATATTTGGTCTG 59.395 38.462 16.48 16.48 39.31 3.51
4083 4347 6.040166 CAGAAATCCAGGAATATTTGGTCTGG 59.960 42.308 15.80 15.80 44.54 3.86
4084 4348 5.472301 AATCCAGGAATATTTGGTCTGGT 57.528 39.130 18.76 10.01 43.83 4.00
4085 4349 4.946160 TCCAGGAATATTTGGTCTGGTT 57.054 40.909 18.76 0.00 43.83 3.67
4086 4350 5.269554 TCCAGGAATATTTGGTCTGGTTT 57.730 39.130 18.76 0.00 43.83 3.27
4087 4351 6.395780 TCCAGGAATATTTGGTCTGGTTTA 57.604 37.500 18.76 6.19 43.83 2.01
4088 4352 6.423182 TCCAGGAATATTTGGTCTGGTTTAG 58.577 40.000 18.76 0.00 43.83 1.85
4089 4353 5.067805 CCAGGAATATTTGGTCTGGTTTAGC 59.932 44.000 14.60 0.00 39.90 3.09
4090 4354 5.652014 CAGGAATATTTGGTCTGGTTTAGCA 59.348 40.000 0.00 0.00 0.00 3.49
4091 4355 5.652452 AGGAATATTTGGTCTGGTTTAGCAC 59.348 40.000 0.00 0.00 0.00 4.40
4092 4356 5.652452 GGAATATTTGGTCTGGTTTAGCACT 59.348 40.000 0.00 0.00 0.00 4.40
4093 4357 6.826741 GGAATATTTGGTCTGGTTTAGCACTA 59.173 38.462 0.00 0.00 0.00 2.74
4094 4358 7.201705 GGAATATTTGGTCTGGTTTAGCACTAC 60.202 40.741 0.00 0.00 0.00 2.73
4095 4359 4.699925 TTTGGTCTGGTTTAGCACTACT 57.300 40.909 0.00 0.00 0.00 2.57
4096 4360 5.811796 TTTGGTCTGGTTTAGCACTACTA 57.188 39.130 0.00 0.00 0.00 1.82
4097 4361 4.796038 TGGTCTGGTTTAGCACTACTAC 57.204 45.455 0.00 0.00 0.00 2.73
4098 4362 4.413760 TGGTCTGGTTTAGCACTACTACT 58.586 43.478 0.00 0.00 0.00 2.57
4099 4363 4.836736 TGGTCTGGTTTAGCACTACTACTT 59.163 41.667 0.00 0.00 0.00 2.24
4100 4364 5.047519 TGGTCTGGTTTAGCACTACTACTTC 60.048 44.000 0.00 0.00 0.00 3.01
4101 4365 5.409211 GTCTGGTTTAGCACTACTACTTCC 58.591 45.833 0.00 0.00 0.00 3.46
4102 4366 5.047519 GTCTGGTTTAGCACTACTACTTCCA 60.048 44.000 0.00 0.00 0.00 3.53
4103 4367 5.720041 TCTGGTTTAGCACTACTACTTCCAT 59.280 40.000 0.00 0.00 30.10 3.41
4104 4368 6.212791 TCTGGTTTAGCACTACTACTTCCATT 59.787 38.462 0.00 0.00 30.10 3.16
4105 4369 7.398047 TCTGGTTTAGCACTACTACTTCCATTA 59.602 37.037 0.00 0.00 30.10 1.90
4106 4370 8.086143 TGGTTTAGCACTACTACTTCCATTAT 57.914 34.615 0.00 0.00 0.00 1.28
4107 4371 7.985184 TGGTTTAGCACTACTACTTCCATTATG 59.015 37.037 0.00 0.00 0.00 1.90
4108 4372 7.985752 GGTTTAGCACTACTACTTCCATTATGT 59.014 37.037 0.00 0.00 0.00 2.29
4109 4373 9.379791 GTTTAGCACTACTACTTCCATTATGTT 57.620 33.333 0.00 0.00 0.00 2.71
4110 4374 9.953565 TTTAGCACTACTACTTCCATTATGTTT 57.046 29.630 0.00 0.00 0.00 2.83
4111 4375 9.953565 TTAGCACTACTACTTCCATTATGTTTT 57.046 29.630 0.00 0.00 0.00 2.43
4112 4376 8.863872 AGCACTACTACTTCCATTATGTTTTT 57.136 30.769 0.00 0.00 0.00 1.94
4113 4377 9.953565 AGCACTACTACTTCCATTATGTTTTTA 57.046 29.630 0.00 0.00 0.00 1.52
4138 4402 8.915871 ATTTTTCAATTATGATGACGAACAGG 57.084 30.769 0.00 0.00 34.96 4.00
4139 4403 6.435430 TTTCAATTATGATGACGAACAGGG 57.565 37.500 0.00 0.00 34.96 4.45
4140 4404 4.450976 TCAATTATGATGACGAACAGGGG 58.549 43.478 0.00 0.00 0.00 4.79
4141 4405 4.163268 TCAATTATGATGACGAACAGGGGA 59.837 41.667 0.00 0.00 0.00 4.81
4142 4406 4.982241 ATTATGATGACGAACAGGGGAT 57.018 40.909 0.00 0.00 0.00 3.85
4143 4407 4.771114 TTATGATGACGAACAGGGGATT 57.229 40.909 0.00 0.00 0.00 3.01
4144 4408 2.401583 TGATGACGAACAGGGGATTG 57.598 50.000 0.00 0.00 0.00 2.67
4145 4409 1.905894 TGATGACGAACAGGGGATTGA 59.094 47.619 0.00 0.00 0.00 2.57
4146 4410 2.280628 GATGACGAACAGGGGATTGAC 58.719 52.381 0.00 0.00 0.00 3.18
4147 4411 1.052617 TGACGAACAGGGGATTGACA 58.947 50.000 0.00 0.00 0.00 3.58
4148 4412 1.001974 TGACGAACAGGGGATTGACAG 59.998 52.381 0.00 0.00 0.00 3.51
4149 4413 0.321653 ACGAACAGGGGATTGACAGC 60.322 55.000 0.00 0.00 0.00 4.40
4150 4414 1.026718 CGAACAGGGGATTGACAGCC 61.027 60.000 0.00 0.00 0.00 4.85
4151 4415 0.038166 GAACAGGGGATTGACAGCCA 59.962 55.000 0.00 0.00 0.00 4.75
4152 4416 0.038744 AACAGGGGATTGACAGCCAG 59.961 55.000 0.00 0.00 0.00 4.85
4153 4417 0.842030 ACAGGGGATTGACAGCCAGA 60.842 55.000 0.00 0.00 0.00 3.86
4154 4418 0.329261 CAGGGGATTGACAGCCAGAA 59.671 55.000 0.00 0.00 0.00 3.02
4155 4419 0.622665 AGGGGATTGACAGCCAGAAG 59.377 55.000 0.00 0.00 0.00 2.85
4156 4420 0.394899 GGGGATTGACAGCCAGAAGG 60.395 60.000 0.00 0.00 38.23 3.46
4170 4434 4.766404 CCAGAAGGCGATTAAAAACTGT 57.234 40.909 0.00 0.00 0.00 3.55
4171 4435 5.873179 CCAGAAGGCGATTAAAAACTGTA 57.127 39.130 0.00 0.00 0.00 2.74
4172 4436 5.869350 CCAGAAGGCGATTAAAAACTGTAG 58.131 41.667 0.00 0.00 0.00 2.74
4173 4437 5.642063 CCAGAAGGCGATTAAAAACTGTAGA 59.358 40.000 0.00 0.00 0.00 2.59
4174 4438 6.148811 CCAGAAGGCGATTAAAAACTGTAGAA 59.851 38.462 0.00 0.00 0.00 2.10
4175 4439 7.308348 CCAGAAGGCGATTAAAAACTGTAGAAA 60.308 37.037 0.00 0.00 0.00 2.52
4176 4440 8.237267 CAGAAGGCGATTAAAAACTGTAGAAAT 58.763 33.333 0.00 0.00 0.00 2.17
4177 4441 8.451748 AGAAGGCGATTAAAAACTGTAGAAATC 58.548 33.333 0.00 0.00 0.00 2.17
4178 4442 7.923414 AGGCGATTAAAAACTGTAGAAATCT 57.077 32.000 0.00 0.00 0.00 2.40
4179 4443 8.336801 AGGCGATTAAAAACTGTAGAAATCTT 57.663 30.769 0.00 0.00 0.00 2.40
4180 4444 8.237267 AGGCGATTAAAAACTGTAGAAATCTTG 58.763 33.333 0.00 0.00 0.00 3.02
4181 4445 8.021396 GGCGATTAAAAACTGTAGAAATCTTGT 58.979 33.333 0.00 0.00 0.00 3.16
4182 4446 8.840867 GCGATTAAAAACTGTAGAAATCTTGTG 58.159 33.333 0.00 0.00 0.00 3.33
4183 4447 9.329913 CGATTAAAAACTGTAGAAATCTTGTGG 57.670 33.333 0.00 0.00 0.00 4.17
4211 4475 9.847706 TTATTTAAACAAATAGATTGAGCGCAA 57.152 25.926 11.47 5.03 41.85 4.85
4212 4476 7.795431 TTTAAACAAATAGATTGAGCGCAAG 57.205 32.000 11.47 0.00 41.85 4.01
4213 4477 5.376854 AAACAAATAGATTGAGCGCAAGT 57.623 34.783 11.47 1.04 41.85 3.16
4214 4478 4.606457 ACAAATAGATTGAGCGCAAGTC 57.394 40.909 11.47 3.58 41.85 3.01
4215 4479 4.256920 ACAAATAGATTGAGCGCAAGTCT 58.743 39.130 11.47 11.67 41.85 3.24
4216 4480 4.697352 ACAAATAGATTGAGCGCAAGTCTT 59.303 37.500 11.47 0.00 41.85 3.01
4217 4481 4.871993 AATAGATTGAGCGCAAGTCTTG 57.128 40.909 11.47 8.31 37.45 3.02
4218 4482 2.175878 AGATTGAGCGCAAGTCTTGT 57.824 45.000 11.47 0.00 37.45 3.16
4219 4483 2.498167 AGATTGAGCGCAAGTCTTGTT 58.502 42.857 11.47 0.76 37.45 2.83
4220 4484 2.880890 AGATTGAGCGCAAGTCTTGTTT 59.119 40.909 11.47 0.42 37.45 2.83
4221 4485 2.473530 TTGAGCGCAAGTCTTGTTTG 57.526 45.000 11.47 5.96 41.68 2.93
4222 4486 0.662619 TGAGCGCAAGTCTTGTTTGG 59.337 50.000 11.47 3.19 41.68 3.28
4223 4487 0.661483 GAGCGCAAGTCTTGTTTGGC 60.661 55.000 11.47 11.81 41.68 4.52
4224 4488 1.661509 GCGCAAGTCTTGTTTGGCC 60.662 57.895 14.03 0.00 41.68 5.36
4225 4489 1.370414 CGCAAGTCTTGTTTGGCCG 60.370 57.895 14.03 4.30 0.00 6.13
4226 4490 1.661509 GCAAGTCTTGTTTGGCCGC 60.662 57.895 14.03 0.00 0.00 6.53
4227 4491 1.007387 CAAGTCTTGTTTGGCCGCC 60.007 57.895 1.04 1.04 0.00 6.13
4228 4492 1.454847 AAGTCTTGTTTGGCCGCCA 60.455 52.632 8.43 8.43 0.00 5.69
4229 4493 1.040339 AAGTCTTGTTTGGCCGCCAA 61.040 50.000 21.31 21.31 42.29 4.52
4230 4494 0.827507 AGTCTTGTTTGGCCGCCAAT 60.828 50.000 25.37 5.99 43.55 3.16
4231 4495 0.388520 GTCTTGTTTGGCCGCCAATC 60.389 55.000 25.37 23.29 43.55 2.67
4232 4496 1.444212 CTTGTTTGGCCGCCAATCG 60.444 57.895 25.37 9.30 43.55 3.34
4233 4497 3.565910 TTGTTTGGCCGCCAATCGC 62.566 57.895 25.37 17.72 43.55 4.58
4234 4498 4.049640 GTTTGGCCGCCAATCGCA 62.050 61.111 25.37 7.94 43.55 5.10
4235 4499 3.746889 TTTGGCCGCCAATCGCAG 61.747 61.111 25.37 0.00 43.55 5.18
4241 4505 4.531912 CGCCAATCGCAGCAGCAG 62.532 66.667 0.82 0.00 42.27 4.24
4242 4506 3.129502 GCCAATCGCAGCAGCAGA 61.130 61.111 0.82 0.00 42.27 4.26
4243 4507 2.789917 CCAATCGCAGCAGCAGAC 59.210 61.111 0.82 0.00 42.27 3.51
4244 4508 2.398429 CAATCGCAGCAGCAGACG 59.602 61.111 0.82 0.00 42.27 4.18
4245 4509 3.494336 AATCGCAGCAGCAGACGC 61.494 61.111 0.82 0.00 42.27 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 4.065088 TGTCTCAATGGTAGTTGTGCTTC 58.935 43.478 0.00 0.00 0.00 3.86
63 67 9.740239 ATATGTCAATTATTTTTAGCAGCAGTG 57.260 29.630 0.00 0.00 0.00 3.66
89 93 4.081365 TGAATATAGGTGAAGGCACGTGAA 60.081 41.667 22.23 0.00 46.09 3.18
94 98 6.073003 GCATAACTGAATATAGGTGAAGGCAC 60.073 42.308 0.00 0.00 44.39 5.01
135 139 3.397482 AGTCGATGCTAATCTCATTGGC 58.603 45.455 0.00 0.00 45.65 4.52
136 140 6.018589 TCTAGTCGATGCTAATCTCATTGG 57.981 41.667 0.00 0.00 0.00 3.16
137 141 9.235537 CATATCTAGTCGATGCTAATCTCATTG 57.764 37.037 0.00 0.00 33.48 2.82
173 177 1.234821 ATGTACACGGCACAACTTGG 58.765 50.000 0.00 0.00 0.00 3.61
184 192 3.552541 GCCTAGTCGACATATGTACACG 58.447 50.000 19.50 8.69 0.00 4.49
189 197 2.383442 AGGGCCTAGTCGACATATGT 57.617 50.000 19.50 8.43 0.00 2.29
192 200 2.440627 TCTGTAGGGCCTAGTCGACATA 59.559 50.000 19.50 0.00 0.00 2.29
197 205 3.118738 ACATTTTCTGTAGGGCCTAGTCG 60.119 47.826 15.05 5.42 35.91 4.18
202 210 3.076032 AGGAAACATTTTCTGTAGGGCCT 59.924 43.478 12.58 12.58 36.98 5.19
212 220 9.028185 GCTCAATAATGATGAGGAAACATTTTC 57.972 33.333 5.76 0.00 43.60 2.29
217 225 6.660521 ACAAGCTCAATAATGATGAGGAAACA 59.339 34.615 5.76 0.00 43.60 2.83
260 268 7.510549 AGCAAGAAAGAACTATGTTTAGCAA 57.489 32.000 0.00 0.00 0.00 3.91
271 279 3.612004 CGACGAGGTAGCAAGAAAGAACT 60.612 47.826 0.00 0.00 0.00 3.01
273 281 2.555325 TCGACGAGGTAGCAAGAAAGAA 59.445 45.455 0.00 0.00 0.00 2.52
274 282 2.095364 GTCGACGAGGTAGCAAGAAAGA 60.095 50.000 0.00 0.00 0.00 2.52
275 283 2.251893 GTCGACGAGGTAGCAAGAAAG 58.748 52.381 0.00 0.00 0.00 2.62
276 284 1.610038 TGTCGACGAGGTAGCAAGAAA 59.390 47.619 11.62 0.00 0.00 2.52
359 367 5.472478 CCAATCATAGGTCCACAATGATCAG 59.528 44.000 12.32 9.36 38.97 2.90
408 416 3.060003 CCAAATTCGAGATAGAAGCGCAG 60.060 47.826 11.47 0.00 33.19 5.18
422 430 6.197096 GCTACAATAGACAAATGCCAAATTCG 59.803 38.462 0.00 0.00 0.00 3.34
427 435 5.009631 AGTGCTACAATAGACAAATGCCAA 58.990 37.500 0.00 0.00 0.00 4.52
453 461 1.750778 GGATGAAACGCCAATGACCAT 59.249 47.619 0.00 0.00 0.00 3.55
454 462 1.173043 GGATGAAACGCCAATGACCA 58.827 50.000 0.00 0.00 0.00 4.02
455 463 1.401905 GAGGATGAAACGCCAATGACC 59.598 52.381 0.00 0.00 0.00 4.02
456 464 1.062587 CGAGGATGAAACGCCAATGAC 59.937 52.381 0.00 0.00 0.00 3.06
457 465 1.368641 CGAGGATGAAACGCCAATGA 58.631 50.000 0.00 0.00 0.00 2.57
459 467 2.098293 GCGAGGATGAAACGCCAAT 58.902 52.632 0.00 0.00 45.35 3.16
460 468 3.573558 GCGAGGATGAAACGCCAA 58.426 55.556 0.00 0.00 45.35 4.52
464 472 0.179161 AGAGACGCGAGGATGAAACG 60.179 55.000 15.93 0.00 0.00 3.60
465 473 1.997669 AAGAGACGCGAGGATGAAAC 58.002 50.000 15.93 0.00 0.00 2.78
466 474 2.743636 AAAGAGACGCGAGGATGAAA 57.256 45.000 15.93 0.00 0.00 2.69
467 475 2.607187 GAAAAGAGACGCGAGGATGAA 58.393 47.619 15.93 0.00 0.00 2.57
468 476 1.467543 CGAAAAGAGACGCGAGGATGA 60.468 52.381 15.93 0.00 0.00 2.92
470 478 0.526662 ACGAAAAGAGACGCGAGGAT 59.473 50.000 15.93 0.00 0.00 3.24
476 486 6.866179 TCTTATAGAAACGAAAAGAGACGC 57.134 37.500 0.00 0.00 0.00 5.19
510 585 2.335316 ACCAAAAACGGACTAGCACA 57.665 45.000 0.00 0.00 0.00 4.57
527 602 3.824133 ACAAGGGTGTTAACTGGTTACC 58.176 45.455 7.22 5.37 32.58 2.85
528 603 5.999600 ACATACAAGGGTGTTAACTGGTTAC 59.000 40.000 7.22 0.00 39.30 2.50
532 609 5.181245 CAGAACATACAAGGGTGTTAACTGG 59.819 44.000 7.22 0.00 38.57 4.00
572 649 3.256960 GTGCCCCTCCACCTCCAA 61.257 66.667 0.00 0.00 0.00 3.53
628 705 3.767131 GCTTCTACTCTCAGGGAGACTTT 59.233 47.826 3.57 0.00 44.45 2.66
678 755 7.602644 CAGGCTTGATTAGTTGTACAAGAAGTA 59.397 37.037 8.98 0.00 41.16 2.24
682 759 4.695455 GCAGGCTTGATTAGTTGTACAAGA 59.305 41.667 8.98 0.00 41.16 3.02
692 769 2.015736 ACAGTCGCAGGCTTGATTAG 57.984 50.000 0.00 0.00 45.33 1.73
698 775 2.232298 GAGGCTACAGTCGCAGGCTT 62.232 60.000 0.00 0.00 45.33 4.35
720 798 2.504367 CCCGGCTCAATAATGTTAGGG 58.496 52.381 0.00 0.00 0.00 3.53
737 815 0.529337 CATGAGTGCTACTCTGCCCG 60.529 60.000 14.60 0.00 45.27 6.13
751 829 5.163591 ACAACACAACATATGATGGCATGAG 60.164 40.000 16.37 7.47 35.94 2.90
762 840 9.029243 CATACAACAAAACACAACACAACATAT 57.971 29.630 0.00 0.00 0.00 1.78
765 843 6.216569 ACATACAACAAAACACAACACAACA 58.783 32.000 0.00 0.00 0.00 3.33
766 844 6.698359 ACATACAACAAAACACAACACAAC 57.302 33.333 0.00 0.00 0.00 3.32
767 845 8.029522 ACATACATACAACAAAACACAACACAA 58.970 29.630 0.00 0.00 0.00 3.33
768 846 7.539436 ACATACATACAACAAAACACAACACA 58.461 30.769 0.00 0.00 0.00 3.72
769 847 7.979115 ACATACATACAACAAAACACAACAC 57.021 32.000 0.00 0.00 0.00 3.32
800 878 5.353394 AGCAATCAAAAGATGGCATGAAT 57.647 34.783 3.81 0.00 34.02 2.57
803 881 6.741109 TGTATAGCAATCAAAAGATGGCATG 58.259 36.000 3.81 0.00 34.02 4.06
804 882 6.964807 TGTATAGCAATCAAAAGATGGCAT 57.035 33.333 0.00 0.00 34.02 4.40
817 915 3.137176 AGGCACACCAGATGTATAGCAAT 59.863 43.478 0.00 0.00 40.64 3.56
818 916 2.505407 AGGCACACCAGATGTATAGCAA 59.495 45.455 0.00 0.00 40.64 3.91
825 923 1.604593 GGCAAGGCACACCAGATGT 60.605 57.895 0.00 0.00 44.81 3.06
850 955 9.257651 ACTATAAAATACTACAATCGTTGCTCC 57.742 33.333 0.00 0.00 0.00 4.70
877 982 9.231297 ACAACTCTACACAACTGCATATAAATT 57.769 29.630 0.00 0.00 0.00 1.82
878 983 8.668353 CACAACTCTACACAACTGCATATAAAT 58.332 33.333 0.00 0.00 0.00 1.40
918 1023 3.190744 TCAAGCTCCACTCTACACTTACG 59.809 47.826 0.00 0.00 0.00 3.18
920 1025 4.402793 GGATCAAGCTCCACTCTACACTTA 59.597 45.833 0.00 0.00 35.24 2.24
932 1037 0.747283 CACCTGCAGGATCAAGCTCC 60.747 60.000 39.19 0.00 38.94 4.70
972 1077 7.282224 TGCAGTTTCTACTTTCTAGCAGAAAAA 59.718 33.333 10.97 2.78 42.54 1.94
987 1092 9.250624 CCTACTTCTAACATATGCAGTTTCTAC 57.749 37.037 1.58 0.00 0.00 2.59
1019 1130 0.938637 CATGGCAAAGCGCGTTTTCA 60.939 50.000 18.41 14.34 43.84 2.69
1052 1168 2.159627 GGTGAAGACGTATTGCAAGTGG 59.840 50.000 4.94 0.00 0.00 4.00
1053 1169 2.805671 TGGTGAAGACGTATTGCAAGTG 59.194 45.455 4.94 0.00 0.00 3.16
1135 1251 1.671901 GAGTGAAGCGGGAGGAGAGG 61.672 65.000 0.00 0.00 0.00 3.69
1429 1553 4.140924 AGGGAGGCTTTGGGGATTATAAAG 60.141 45.833 0.00 0.00 35.18 1.85
1471 1595 2.843077 CACACAGACAATGCTTAAGCG 58.157 47.619 21.97 10.80 45.83 4.68
1598 1727 5.010314 AGACAAGTGAACATAGTAACACCGA 59.990 40.000 0.00 0.00 34.33 4.69
1600 1729 5.107065 GCAGACAAGTGAACATAGTAACACC 60.107 44.000 0.00 0.00 34.33 4.16
1602 1731 5.606505 TGCAGACAAGTGAACATAGTAACA 58.393 37.500 0.00 0.00 0.00 2.41
1618 1819 3.070015 TGACTTGACTGAAGATGCAGACA 59.930 43.478 0.00 0.00 38.44 3.41
1619 1820 3.657634 TGACTTGACTGAAGATGCAGAC 58.342 45.455 0.00 0.00 39.20 3.51
1679 1880 2.961062 GGGATAACATTTGCATGAGGCT 59.039 45.455 0.00 0.00 45.15 4.58
1684 1885 3.068590 GGTCCTGGGATAACATTTGCATG 59.931 47.826 0.00 0.00 36.34 4.06
1687 1888 3.018423 AGGTCCTGGGATAACATTTGC 57.982 47.619 0.00 0.00 0.00 3.68
1690 1891 4.292306 AGAACAAGGTCCTGGGATAACATT 59.708 41.667 0.00 0.00 0.00 2.71
1691 1892 3.852578 AGAACAAGGTCCTGGGATAACAT 59.147 43.478 0.00 0.00 0.00 2.71
1693 1894 3.519913 AGAGAACAAGGTCCTGGGATAAC 59.480 47.826 0.00 0.00 0.00 1.89
1700 1916 4.277515 TCATTCAGAGAACAAGGTCCTG 57.722 45.455 0.00 0.00 0.00 3.86
1701 1917 4.288105 ACATCATTCAGAGAACAAGGTCCT 59.712 41.667 0.00 0.00 0.00 3.85
1707 1923 6.408869 TGCAGATACATCATTCAGAGAACAA 58.591 36.000 0.00 0.00 0.00 2.83
1710 1926 7.555195 ACAATTGCAGATACATCATTCAGAGAA 59.445 33.333 5.05 0.00 0.00 2.87
1713 1929 6.600427 ACACAATTGCAGATACATCATTCAGA 59.400 34.615 5.05 0.00 0.00 3.27
1764 1983 2.218603 GCAAATGTTATCCCGGACGAT 58.781 47.619 0.73 0.00 0.00 3.73
1854 2073 3.877559 TCAGTCCACCTGCTGATATTTG 58.122 45.455 0.00 0.00 41.25 2.32
1906 2125 3.564644 TCGTTAAAAATGCTCGGAACCAA 59.435 39.130 0.00 0.00 0.00 3.67
1907 2126 3.139850 TCGTTAAAAATGCTCGGAACCA 58.860 40.909 0.00 0.00 0.00 3.67
1930 2149 7.779798 ACCCAATCTGTGCACTAAACAATATAT 59.220 33.333 19.41 0.00 0.00 0.86
1961 2184 1.180029 CAAATGCCTTCTGGTCAGGG 58.820 55.000 0.00 0.00 35.27 4.45
1967 2190 0.597568 TCAACGCAAATGCCTTCTGG 59.402 50.000 0.00 0.00 37.91 3.86
2042 2265 3.706594 GGGACTCTTCACCAGTATCATCA 59.293 47.826 0.00 0.00 0.00 3.07
2060 2283 8.387813 TGGATAATATATGTTTACTTGGGGGAC 58.612 37.037 0.00 0.00 0.00 4.46
2078 2301 9.841295 GGTAAACACCTAAGACAATGGATAATA 57.159 33.333 0.00 0.00 0.00 0.98
2079 2302 8.557450 AGGTAAACACCTAAGACAATGGATAAT 58.443 33.333 0.00 0.00 38.58 1.28
2081 2304 7.335627 CAGGTAAACACCTAAGACAATGGATA 58.664 38.462 0.00 0.00 38.22 2.59
2082 2305 6.180472 CAGGTAAACACCTAAGACAATGGAT 58.820 40.000 0.00 0.00 38.22 3.41
2083 2306 5.556915 CAGGTAAACACCTAAGACAATGGA 58.443 41.667 0.00 0.00 38.22 3.41
2084 2307 4.156008 GCAGGTAAACACCTAAGACAATGG 59.844 45.833 0.00 0.00 38.22 3.16
2085 2308 4.759693 TGCAGGTAAACACCTAAGACAATG 59.240 41.667 0.00 0.00 38.22 2.82
2086 2309 4.980573 TGCAGGTAAACACCTAAGACAAT 58.019 39.130 0.00 0.00 38.22 2.71
2088 2311 4.634012 ATGCAGGTAAACACCTAAGACA 57.366 40.909 0.00 0.00 38.22 3.41
2089 2312 6.821665 TCATAATGCAGGTAAACACCTAAGAC 59.178 38.462 0.00 0.00 38.22 3.01
2090 2313 6.953101 TCATAATGCAGGTAAACACCTAAGA 58.047 36.000 0.00 0.00 38.22 2.10
2091 2314 7.642669 CATCATAATGCAGGTAAACACCTAAG 58.357 38.462 0.00 0.00 38.22 2.18
2092 2315 7.566760 CATCATAATGCAGGTAAACACCTAA 57.433 36.000 0.00 0.00 38.22 2.69
2226 2460 0.323629 TGTGGAAAGCTCTTACCCGG 59.676 55.000 0.00 0.00 0.00 5.73
2256 2490 1.117150 GTGTATCGAGCACCCCCTTA 58.883 55.000 10.69 0.00 0.00 2.69
2308 2542 0.524862 GAAGAGTCGGCGAGTGGTAA 59.475 55.000 23.75 0.00 0.00 2.85
2317 2551 3.804873 GGATCATTACTTGAAGAGTCGGC 59.195 47.826 0.00 0.00 39.86 5.54
2330 2564 5.127845 TGAGAACTCACCTCAGGATCATTAC 59.872 44.000 0.00 0.00 35.89 1.89
2332 2566 4.099633 TGAGAACTCACCTCAGGATCATT 58.900 43.478 0.00 0.00 35.89 2.57
2393 2627 7.422512 AGGTATATCTTAGCATATGACCCTGA 58.577 38.462 6.97 0.00 0.00 3.86
2418 2652 5.714806 GGGAATCTGGTGACAAAGGATAAAA 59.285 40.000 0.00 0.00 42.06 1.52
2434 2668 2.103094 TCCTATCGTTGCTGGGAATCTG 59.897 50.000 0.00 0.00 0.00 2.90
2463 2701 1.001641 CTCCCACCTTCCAAGCAGG 60.002 63.158 0.00 0.00 37.45 4.85
2496 2734 1.916181 CCATACACCCCACTCCTCTTT 59.084 52.381 0.00 0.00 0.00 2.52
2505 2743 0.037590 GTGTTGCTCCATACACCCCA 59.962 55.000 0.00 0.00 38.92 4.96
2523 2761 0.955178 CCGTATCAGCCTCATCGAGT 59.045 55.000 0.00 0.00 0.00 4.18
2550 2791 4.892345 TGACCATTGTTGTCCATTTCAAGA 59.108 37.500 0.00 0.00 31.60 3.02
2592 2833 8.063153 TGTTGGAATTACCTCTACCATAGACTA 58.937 37.037 0.00 0.00 39.86 2.59
2689 2932 2.358125 CCACCAATCCACGCACGA 60.358 61.111 0.00 0.00 0.00 4.35
2754 2997 9.672086 GCTTATGAAACACACTGTTATGTAAAA 57.328 29.630 0.00 0.00 40.14 1.52
2755 2998 8.841300 TGCTTATGAAACACACTGTTATGTAAA 58.159 29.630 0.00 0.00 40.14 2.01
2793 3036 4.084287 ACATTAGTGTCGTCTAACCCAGA 58.916 43.478 0.00 0.00 31.41 3.86
2796 3039 6.335777 ACATAACATTAGTGTCGTCTAACCC 58.664 40.000 0.00 0.00 37.67 4.11
2845 3088 5.827797 AGAAAACATTTCTTCTGCAGTACCA 59.172 36.000 14.67 0.00 30.67 3.25
3024 3267 3.953612 TCCATCAAACTGAAGCAAGTTGT 59.046 39.130 4.48 0.00 40.28 3.32
3190 3433 1.153939 CAGACCAGCCGAGTCGAAG 60.154 63.158 15.64 2.90 39.31 3.79
3214 3457 4.025813 GTCTCTATGAAGTAGGTCGACGAC 60.026 50.000 19.70 19.70 0.00 4.34
3230 3473 6.892456 TCACTGACTCATACTTTGGTCTCTAT 59.108 38.462 0.00 0.00 0.00 1.98
3265 3508 8.147058 TGGTGCATTACATTTTGTACAAAGAAT 58.853 29.630 19.72 14.66 31.69 2.40
3280 3523 3.191162 GCTCACAGAATTGGTGCATTACA 59.809 43.478 0.00 0.00 36.22 2.41
3396 3648 3.678056 ACACCAGCTCGATACTTTTCA 57.322 42.857 0.00 0.00 0.00 2.69
3397 3649 4.691216 AGAAACACCAGCTCGATACTTTTC 59.309 41.667 0.00 0.00 0.00 2.29
3398 3650 4.642429 AGAAACACCAGCTCGATACTTTT 58.358 39.130 0.00 0.00 0.00 2.27
3399 3651 4.273148 AGAAACACCAGCTCGATACTTT 57.727 40.909 0.00 0.00 0.00 2.66
3402 3654 4.246458 AGAAAGAAACACCAGCTCGATAC 58.754 43.478 0.00 0.00 0.00 2.24
3413 3665 7.706607 AGATTTAGCCAAACAAGAAAGAAACAC 59.293 33.333 0.00 0.00 0.00 3.32
3416 3668 9.665719 AAAAGATTTAGCCAAACAAGAAAGAAA 57.334 25.926 0.00 0.00 0.00 2.52
3426 3678 9.759259 GAATGCAAATAAAAGATTTAGCCAAAC 57.241 29.630 0.00 0.00 0.00 2.93
3459 3711 7.655328 TGCCAAATAACAATTAGAAACCAGTTG 59.345 33.333 0.00 0.00 0.00 3.16
3477 3730 8.723311 GGTTAGCGTGTATTTATATGCCAAATA 58.277 33.333 0.00 0.00 30.68 1.40
3478 3731 7.447238 AGGTTAGCGTGTATTTATATGCCAAAT 59.553 33.333 0.00 0.00 30.68 2.32
3496 3749 9.677567 ACAAATATGCAAATATAAAGGTTAGCG 57.322 29.630 0.00 0.00 0.00 4.26
3524 3777 2.230508 AGATGGCATGTGAAAGTGCAAG 59.769 45.455 3.81 0.00 43.00 4.01
3525 3778 2.241160 AGATGGCATGTGAAAGTGCAA 58.759 42.857 3.81 0.00 43.00 4.08
3529 3782 2.086869 CCGAAGATGGCATGTGAAAGT 58.913 47.619 3.81 0.00 0.00 2.66
3536 3789 5.335426 CCAATTTCTATCCGAAGATGGCATG 60.335 44.000 3.81 0.00 34.50 4.06
3549 3802 8.125448 CAGTAGCTAGCAAAACCAATTTCTATC 58.875 37.037 18.83 0.00 0.00 2.08
3554 3807 5.048013 GTCCAGTAGCTAGCAAAACCAATTT 60.048 40.000 18.83 0.00 0.00 1.82
3568 3821 1.480137 GCAGATCACAGTCCAGTAGCT 59.520 52.381 0.00 0.00 0.00 3.32
3569 3822 1.205655 TGCAGATCACAGTCCAGTAGC 59.794 52.381 0.00 0.00 0.00 3.58
3578 3831 2.937149 CCAGTTCAGATGCAGATCACAG 59.063 50.000 0.00 0.00 0.00 3.66
3581 3834 4.824479 TTACCAGTTCAGATGCAGATCA 57.176 40.909 0.00 0.00 0.00 2.92
3588 3841 4.929211 TCACGTTCATTACCAGTTCAGATG 59.071 41.667 0.00 0.00 0.00 2.90
3652 3911 4.285863 TCCATTCCTTGACCACACTTTTT 58.714 39.130 0.00 0.00 0.00 1.94
3681 3943 6.348868 GGAGCTTCTAGACCTGTTTTCAAATG 60.349 42.308 0.00 0.00 0.00 2.32
3683 3945 5.063880 GGAGCTTCTAGACCTGTTTTCAAA 58.936 41.667 0.00 0.00 0.00 2.69
3685 3947 3.646162 TGGAGCTTCTAGACCTGTTTTCA 59.354 43.478 0.00 0.00 0.00 2.69
3690 3952 1.178276 CGTGGAGCTTCTAGACCTGT 58.822 55.000 0.00 0.00 0.00 4.00
3700 3962 2.228138 TTACAAACGACGTGGAGCTT 57.772 45.000 3.97 0.00 0.00 3.74
3702 3964 1.593933 TGTTTACAAACGACGTGGAGC 59.406 47.619 3.97 0.00 41.74 4.70
3715 3977 6.154203 TGTCAAAGGCATCATTTGTTTACA 57.846 33.333 4.28 0.11 38.50 2.41
3718 3980 5.524646 CACTTGTCAAAGGCATCATTTGTTT 59.475 36.000 4.28 0.00 38.50 2.83
3721 3983 3.430895 GCACTTGTCAAAGGCATCATTTG 59.569 43.478 3.84 0.00 37.76 2.32
3723 3985 2.028748 GGCACTTGTCAAAGGCATCATT 60.029 45.455 9.55 0.00 37.76 2.57
3725 3987 0.961019 GGCACTTGTCAAAGGCATCA 59.039 50.000 9.55 0.00 37.76 3.07
3846 4108 7.006865 TGTTTGGTAGGTGCAAGTAGTATAA 57.993 36.000 0.00 0.00 0.00 0.98
3857 4119 8.996024 ACAAATATATTTTGTTTGGTAGGTGC 57.004 30.769 8.01 0.00 39.36 5.01
3877 4139 9.817809 CCCTAGCATTACGACATATATACAAAT 57.182 33.333 0.00 0.00 0.00 2.32
3879 4141 8.584063 TCCCTAGCATTACGACATATATACAA 57.416 34.615 0.00 0.00 0.00 2.41
3881 4143 8.684520 ACTTCCCTAGCATTACGACATATATAC 58.315 37.037 0.00 0.00 0.00 1.47
3891 4153 2.354821 GGCAAACTTCCCTAGCATTACG 59.645 50.000 0.00 0.00 0.00 3.18
3892 4154 2.688446 GGGCAAACTTCCCTAGCATTAC 59.312 50.000 0.00 0.00 40.66 1.89
3894 4156 1.852633 GGGCAAACTTCCCTAGCATT 58.147 50.000 0.00 0.00 40.66 3.56
3896 4158 1.002624 CGGGCAAACTTCCCTAGCA 60.003 57.895 0.00 0.00 41.69 3.49
3897 4159 2.407428 GCGGGCAAACTTCCCTAGC 61.407 63.158 0.00 0.00 41.69 3.42
3898 4160 1.002624 TGCGGGCAAACTTCCCTAG 60.003 57.895 0.00 0.00 41.69 3.02
3902 4166 0.033366 AATTGTGCGGGCAAACTTCC 59.967 50.000 0.00 0.00 31.63 3.46
3911 4175 3.604130 CGCTTAGAAATTGTGCGGG 57.396 52.632 0.00 0.00 42.46 6.13
3917 4181 7.471721 TGGAAACATATCACGCTTAGAAATTG 58.528 34.615 0.00 0.00 33.40 2.32
3924 4188 5.935206 TCTGTTTGGAAACATATCACGCTTA 59.065 36.000 5.44 0.00 46.71 3.09
3925 4189 4.759693 TCTGTTTGGAAACATATCACGCTT 59.240 37.500 5.44 0.00 46.71 4.68
3930 4194 7.016153 AGTACCTCTGTTTGGAAACATATCA 57.984 36.000 5.44 0.00 46.71 2.15
3931 4195 8.475639 TCTAGTACCTCTGTTTGGAAACATATC 58.524 37.037 5.44 0.00 46.71 1.63
3932 4196 8.375493 TCTAGTACCTCTGTTTGGAAACATAT 57.625 34.615 5.44 0.00 46.71 1.78
3934 4198 6.681729 TCTAGTACCTCTGTTTGGAAACAT 57.318 37.500 5.44 0.00 46.71 2.71
3953 4217 4.447054 CGTTCATGAGGCATTAGCTTCTAG 59.553 45.833 0.00 0.00 46.17 2.43
3967 4231 6.017934 CCTTATACAAATCCACCGTTCATGAG 60.018 42.308 0.00 0.00 0.00 2.90
3975 4239 4.073293 AGCTCCTTATACAAATCCACCG 57.927 45.455 0.00 0.00 0.00 4.94
3977 4241 7.573968 ATTCAAGCTCCTTATACAAATCCAC 57.426 36.000 0.00 0.00 0.00 4.02
3986 4250 7.423844 TGAGACAGAATTCAAGCTCCTTATA 57.576 36.000 8.44 0.00 0.00 0.98
3991 4255 5.240403 AGTTTTGAGACAGAATTCAAGCTCC 59.760 40.000 8.44 0.00 35.01 4.70
3992 4256 6.017605 TCAGTTTTGAGACAGAATTCAAGCTC 60.018 38.462 8.44 10.68 35.01 4.09
3993 4257 5.824624 TCAGTTTTGAGACAGAATTCAAGCT 59.175 36.000 8.44 0.90 35.01 3.74
3994 4258 6.064846 TCAGTTTTGAGACAGAATTCAAGC 57.935 37.500 8.44 0.00 35.01 4.01
3995 4259 7.430502 GTGTTCAGTTTTGAGACAGAATTCAAG 59.569 37.037 8.44 2.21 35.01 3.02
3996 4260 7.250569 GTGTTCAGTTTTGAGACAGAATTCAA 58.749 34.615 8.44 0.00 34.15 2.69
3997 4261 6.183360 GGTGTTCAGTTTTGAGACAGAATTCA 60.183 38.462 8.44 0.00 34.15 2.57
3998 4262 6.183360 TGGTGTTCAGTTTTGAGACAGAATTC 60.183 38.462 0.00 0.00 34.15 2.17
3999 4263 5.652014 TGGTGTTCAGTTTTGAGACAGAATT 59.348 36.000 0.00 0.00 34.15 2.17
4000 4264 5.192927 TGGTGTTCAGTTTTGAGACAGAAT 58.807 37.500 0.00 0.00 34.15 2.40
4001 4265 4.584874 TGGTGTTCAGTTTTGAGACAGAA 58.415 39.130 0.00 0.00 34.15 3.02
4002 4266 4.214986 TGGTGTTCAGTTTTGAGACAGA 57.785 40.909 0.00 0.00 34.15 3.41
4003 4267 6.618287 TTATGGTGTTCAGTTTTGAGACAG 57.382 37.500 0.00 0.00 34.15 3.51
4004 4268 6.545666 ACATTATGGTGTTCAGTTTTGAGACA 59.454 34.615 0.00 0.00 34.15 3.41
4005 4269 6.970484 ACATTATGGTGTTCAGTTTTGAGAC 58.030 36.000 0.00 0.00 34.15 3.36
4006 4270 6.073276 CGACATTATGGTGTTCAGTTTTGAGA 60.073 38.462 0.00 0.00 34.15 3.27
4007 4271 6.079763 CGACATTATGGTGTTCAGTTTTGAG 58.920 40.000 0.00 0.00 34.15 3.02
4008 4272 5.561919 GCGACATTATGGTGTTCAGTTTTGA 60.562 40.000 0.00 0.00 31.16 2.69
4009 4273 4.616802 GCGACATTATGGTGTTCAGTTTTG 59.383 41.667 0.00 0.00 31.16 2.44
4010 4274 4.518970 AGCGACATTATGGTGTTCAGTTTT 59.481 37.500 0.00 0.00 31.16 2.43
4011 4275 4.072131 AGCGACATTATGGTGTTCAGTTT 58.928 39.130 0.00 0.00 31.16 2.66
4012 4276 3.674997 AGCGACATTATGGTGTTCAGTT 58.325 40.909 0.00 0.00 31.16 3.16
4013 4277 3.334583 AGCGACATTATGGTGTTCAGT 57.665 42.857 0.00 0.00 31.16 3.41
4014 4278 4.268644 CAGTAGCGACATTATGGTGTTCAG 59.731 45.833 0.00 0.00 31.16 3.02
4015 4279 4.180817 CAGTAGCGACATTATGGTGTTCA 58.819 43.478 0.00 0.00 31.16 3.18
4016 4280 3.001330 GCAGTAGCGACATTATGGTGTTC 59.999 47.826 0.00 0.00 31.16 3.18
4017 4281 2.936498 GCAGTAGCGACATTATGGTGTT 59.064 45.455 0.00 0.00 31.16 3.32
4018 4282 2.093711 TGCAGTAGCGACATTATGGTGT 60.094 45.455 0.00 0.00 46.23 4.16
4019 4283 2.549926 TGCAGTAGCGACATTATGGTG 58.450 47.619 0.00 0.00 46.23 4.17
4020 4284 2.979814 TGCAGTAGCGACATTATGGT 57.020 45.000 0.00 0.00 46.23 3.55
4021 4285 3.546815 GCTTTGCAGTAGCGACATTATGG 60.547 47.826 7.08 0.00 46.23 2.74
4022 4286 3.310774 AGCTTTGCAGTAGCGACATTATG 59.689 43.478 14.79 0.00 46.23 1.90
4023 4287 3.535561 AGCTTTGCAGTAGCGACATTAT 58.464 40.909 14.79 0.00 46.23 1.28
4024 4288 2.972625 AGCTTTGCAGTAGCGACATTA 58.027 42.857 14.79 0.00 46.23 1.90
4025 4289 1.813513 AGCTTTGCAGTAGCGACATT 58.186 45.000 14.79 0.00 46.23 2.71
4026 4290 1.813513 AAGCTTTGCAGTAGCGACAT 58.186 45.000 14.79 3.56 46.23 3.06
4027 4291 2.448926 TAAGCTTTGCAGTAGCGACA 57.551 45.000 3.20 4.39 46.23 4.35
4028 4292 3.190874 AGATAAGCTTTGCAGTAGCGAC 58.809 45.455 3.20 9.16 46.23 5.19
4029 4293 3.448686 GAGATAAGCTTTGCAGTAGCGA 58.551 45.455 3.20 9.21 46.23 4.93
4030 4294 2.541762 GGAGATAAGCTTTGCAGTAGCG 59.458 50.000 3.20 0.00 46.23 4.26
4031 4295 2.875317 GGGAGATAAGCTTTGCAGTAGC 59.125 50.000 3.20 13.36 42.57 3.58
4032 4296 3.471680 GGGGAGATAAGCTTTGCAGTAG 58.528 50.000 3.20 0.00 0.00 2.57
4033 4297 2.158957 CGGGGAGATAAGCTTTGCAGTA 60.159 50.000 3.20 0.00 0.00 2.74
4034 4298 1.407437 CGGGGAGATAAGCTTTGCAGT 60.407 52.381 3.20 0.00 0.00 4.40
4035 4299 1.303309 CGGGGAGATAAGCTTTGCAG 58.697 55.000 3.20 0.00 0.00 4.41
4036 4300 0.618458 ACGGGGAGATAAGCTTTGCA 59.382 50.000 3.20 0.00 0.00 4.08
4037 4301 1.017387 CACGGGGAGATAAGCTTTGC 58.983 55.000 3.20 0.00 0.00 3.68
4038 4302 2.280628 GTCACGGGGAGATAAGCTTTG 58.719 52.381 3.20 0.00 0.00 2.77
4039 4303 1.906574 TGTCACGGGGAGATAAGCTTT 59.093 47.619 3.20 0.00 0.00 3.51
4040 4304 1.482593 CTGTCACGGGGAGATAAGCTT 59.517 52.381 3.48 3.48 0.00 3.74
4041 4305 1.115467 CTGTCACGGGGAGATAAGCT 58.885 55.000 0.00 0.00 0.00 3.74
4042 4306 1.112113 TCTGTCACGGGGAGATAAGC 58.888 55.000 0.00 0.00 0.00 3.09
4043 4307 3.887621 TTTCTGTCACGGGGAGATAAG 57.112 47.619 0.00 0.00 0.00 1.73
4044 4308 3.134081 GGATTTCTGTCACGGGGAGATAA 59.866 47.826 0.00 0.00 0.00 1.75
4045 4309 2.698797 GGATTTCTGTCACGGGGAGATA 59.301 50.000 0.00 0.00 0.00 1.98
4046 4310 1.486726 GGATTTCTGTCACGGGGAGAT 59.513 52.381 0.00 0.00 0.00 2.75
4047 4311 0.902531 GGATTTCTGTCACGGGGAGA 59.097 55.000 0.00 0.00 0.00 3.71
4048 4312 0.613260 TGGATTTCTGTCACGGGGAG 59.387 55.000 0.00 0.00 0.00 4.30
4049 4313 0.613260 CTGGATTTCTGTCACGGGGA 59.387 55.000 0.00 0.00 0.00 4.81
4050 4314 0.392998 CCTGGATTTCTGTCACGGGG 60.393 60.000 0.00 0.00 0.00 5.73
4051 4315 0.613260 TCCTGGATTTCTGTCACGGG 59.387 55.000 0.00 0.00 0.00 5.28
4052 4316 2.472695 TTCCTGGATTTCTGTCACGG 57.527 50.000 0.00 0.00 0.00 4.94
4053 4317 6.458751 CCAAATATTCCTGGATTTCTGTCACG 60.459 42.308 0.00 0.00 34.35 4.35
4054 4318 6.378280 ACCAAATATTCCTGGATTTCTGTCAC 59.622 38.462 12.27 0.00 36.49 3.67
4055 4319 6.493166 ACCAAATATTCCTGGATTTCTGTCA 58.507 36.000 12.27 0.00 36.49 3.58
4056 4320 6.830838 AGACCAAATATTCCTGGATTTCTGTC 59.169 38.462 12.27 5.07 36.49 3.51
4057 4321 6.604795 CAGACCAAATATTCCTGGATTTCTGT 59.395 38.462 12.27 0.00 36.49 3.41
4058 4322 6.040166 CCAGACCAAATATTCCTGGATTTCTG 59.960 42.308 12.27 13.00 45.35 3.02
4059 4323 6.131961 CCAGACCAAATATTCCTGGATTTCT 58.868 40.000 12.27 3.37 45.35 2.52
4060 4324 5.893824 ACCAGACCAAATATTCCTGGATTTC 59.106 40.000 22.29 8.99 45.35 2.17
4061 4325 5.842339 ACCAGACCAAATATTCCTGGATTT 58.158 37.500 22.29 0.00 45.35 2.17
4062 4326 5.472301 ACCAGACCAAATATTCCTGGATT 57.528 39.130 22.29 0.00 45.35 3.01
4063 4327 5.472301 AACCAGACCAAATATTCCTGGAT 57.528 39.130 22.29 13.76 45.35 3.41
4064 4328 4.946160 AACCAGACCAAATATTCCTGGA 57.054 40.909 22.29 0.00 45.35 3.86
4066 4330 5.652014 TGCTAAACCAGACCAAATATTCCTG 59.348 40.000 0.00 0.00 0.00 3.86
4067 4331 5.652452 GTGCTAAACCAGACCAAATATTCCT 59.348 40.000 0.00 0.00 0.00 3.36
4068 4332 5.652452 AGTGCTAAACCAGACCAAATATTCC 59.348 40.000 0.00 0.00 0.00 3.01
4069 4333 6.759497 AGTGCTAAACCAGACCAAATATTC 57.241 37.500 0.00 0.00 0.00 1.75
4070 4334 7.402862 AGTAGTGCTAAACCAGACCAAATATT 58.597 34.615 0.00 0.00 0.00 1.28
4071 4335 6.958767 AGTAGTGCTAAACCAGACCAAATAT 58.041 36.000 0.00 0.00 0.00 1.28
4072 4336 6.368779 AGTAGTGCTAAACCAGACCAAATA 57.631 37.500 0.00 0.00 0.00 1.40
4073 4337 5.242795 AGTAGTGCTAAACCAGACCAAAT 57.757 39.130 0.00 0.00 0.00 2.32
4074 4338 4.699925 AGTAGTGCTAAACCAGACCAAA 57.300 40.909 0.00 0.00 0.00 3.28
4075 4339 4.836736 AGTAGTAGTGCTAAACCAGACCAA 59.163 41.667 0.00 0.00 0.00 3.67
4076 4340 4.413760 AGTAGTAGTGCTAAACCAGACCA 58.586 43.478 0.00 0.00 0.00 4.02
4077 4341 5.402997 AAGTAGTAGTGCTAAACCAGACC 57.597 43.478 0.00 0.00 0.00 3.85
4078 4342 5.047519 TGGAAGTAGTAGTGCTAAACCAGAC 60.048 44.000 5.63 0.00 30.69 3.51
4079 4343 5.081728 TGGAAGTAGTAGTGCTAAACCAGA 58.918 41.667 5.63 0.00 30.69 3.86
4080 4344 5.401531 TGGAAGTAGTAGTGCTAAACCAG 57.598 43.478 5.63 0.00 30.69 4.00
4081 4345 6.368779 AATGGAAGTAGTAGTGCTAAACCA 57.631 37.500 10.09 10.09 35.02 3.67
4082 4346 7.985752 ACATAATGGAAGTAGTAGTGCTAAACC 59.014 37.037 0.00 0.00 0.00 3.27
4083 4347 8.943909 ACATAATGGAAGTAGTAGTGCTAAAC 57.056 34.615 0.00 0.00 0.00 2.01
4084 4348 9.953565 AAACATAATGGAAGTAGTAGTGCTAAA 57.046 29.630 0.00 0.00 0.00 1.85
4085 4349 9.953565 AAAACATAATGGAAGTAGTAGTGCTAA 57.046 29.630 0.00 0.00 0.00 3.09
4086 4350 9.953565 AAAAACATAATGGAAGTAGTAGTGCTA 57.046 29.630 0.00 0.00 0.00 3.49
4087 4351 8.863872 AAAAACATAATGGAAGTAGTAGTGCT 57.136 30.769 0.00 0.00 0.00 4.40
4113 4377 7.975616 CCCTGTTCGTCATCATAATTGAAAAAT 59.024 33.333 0.00 0.00 34.96 1.82
4114 4378 7.312154 CCCTGTTCGTCATCATAATTGAAAAA 58.688 34.615 0.00 0.00 34.96 1.94
4115 4379 6.127758 CCCCTGTTCGTCATCATAATTGAAAA 60.128 38.462 0.00 0.00 34.96 2.29
4116 4380 5.356751 CCCCTGTTCGTCATCATAATTGAAA 59.643 40.000 0.00 0.00 34.96 2.69
4117 4381 4.881273 CCCCTGTTCGTCATCATAATTGAA 59.119 41.667 0.00 0.00 34.96 2.69
4118 4382 4.163268 TCCCCTGTTCGTCATCATAATTGA 59.837 41.667 0.00 0.00 36.00 2.57
4119 4383 4.450976 TCCCCTGTTCGTCATCATAATTG 58.549 43.478 0.00 0.00 0.00 2.32
4120 4384 4.771114 TCCCCTGTTCGTCATCATAATT 57.229 40.909 0.00 0.00 0.00 1.40
4121 4385 4.982241 ATCCCCTGTTCGTCATCATAAT 57.018 40.909 0.00 0.00 0.00 1.28
4122 4386 4.163268 TCAATCCCCTGTTCGTCATCATAA 59.837 41.667 0.00 0.00 0.00 1.90
4123 4387 3.709141 TCAATCCCCTGTTCGTCATCATA 59.291 43.478 0.00 0.00 0.00 2.15
4124 4388 2.505407 TCAATCCCCTGTTCGTCATCAT 59.495 45.455 0.00 0.00 0.00 2.45
4125 4389 1.905894 TCAATCCCCTGTTCGTCATCA 59.094 47.619 0.00 0.00 0.00 3.07
4126 4390 2.280628 GTCAATCCCCTGTTCGTCATC 58.719 52.381 0.00 0.00 0.00 2.92
4127 4391 1.628340 TGTCAATCCCCTGTTCGTCAT 59.372 47.619 0.00 0.00 0.00 3.06
4128 4392 1.001974 CTGTCAATCCCCTGTTCGTCA 59.998 52.381 0.00 0.00 0.00 4.35
4129 4393 1.726853 CTGTCAATCCCCTGTTCGTC 58.273 55.000 0.00 0.00 0.00 4.20
4130 4394 0.321653 GCTGTCAATCCCCTGTTCGT 60.322 55.000 0.00 0.00 0.00 3.85
4131 4395 1.026718 GGCTGTCAATCCCCTGTTCG 61.027 60.000 0.00 0.00 0.00 3.95
4132 4396 0.038166 TGGCTGTCAATCCCCTGTTC 59.962 55.000 0.00 0.00 0.00 3.18
4133 4397 0.038744 CTGGCTGTCAATCCCCTGTT 59.961 55.000 0.00 0.00 0.00 3.16
4134 4398 0.842030 TCTGGCTGTCAATCCCCTGT 60.842 55.000 0.00 0.00 0.00 4.00
4135 4399 0.329261 TTCTGGCTGTCAATCCCCTG 59.671 55.000 0.00 0.00 0.00 4.45
4136 4400 0.622665 CTTCTGGCTGTCAATCCCCT 59.377 55.000 0.00 0.00 0.00 4.79
4137 4401 0.394899 CCTTCTGGCTGTCAATCCCC 60.395 60.000 0.00 0.00 0.00 4.81
4138 4402 3.181526 CCTTCTGGCTGTCAATCCC 57.818 57.895 0.00 0.00 0.00 3.85
4149 4413 4.766404 ACAGTTTTTAATCGCCTTCTGG 57.234 40.909 0.00 0.00 0.00 3.86
4150 4414 6.721571 TCTACAGTTTTTAATCGCCTTCTG 57.278 37.500 0.00 0.00 0.00 3.02
4151 4415 7.739498 TTTCTACAGTTTTTAATCGCCTTCT 57.261 32.000 0.00 0.00 0.00 2.85
4152 4416 8.451748 AGATTTCTACAGTTTTTAATCGCCTTC 58.548 33.333 0.00 0.00 0.00 3.46
4153 4417 8.336801 AGATTTCTACAGTTTTTAATCGCCTT 57.663 30.769 0.00 0.00 0.00 4.35
4154 4418 7.923414 AGATTTCTACAGTTTTTAATCGCCT 57.077 32.000 0.00 0.00 0.00 5.52
4155 4419 8.021396 ACAAGATTTCTACAGTTTTTAATCGCC 58.979 33.333 0.00 0.00 0.00 5.54
4156 4420 8.840867 CACAAGATTTCTACAGTTTTTAATCGC 58.159 33.333 0.00 0.00 0.00 4.58
4157 4421 9.329913 CCACAAGATTTCTACAGTTTTTAATCG 57.670 33.333 0.00 0.00 0.00 3.34
4185 4449 9.847706 TTGCGCTCAATCTATTTGTTTAAATAA 57.152 25.926 9.73 0.00 38.06 1.40
4186 4450 9.502145 CTTGCGCTCAATCTATTTGTTTAAATA 57.498 29.630 9.73 0.00 37.64 1.40
4187 4451 8.028938 ACTTGCGCTCAATCTATTTGTTTAAAT 58.971 29.630 9.73 0.00 39.69 1.40
4188 4452 7.367285 ACTTGCGCTCAATCTATTTGTTTAAA 58.633 30.769 9.73 0.00 36.65 1.52
4189 4453 6.908825 ACTTGCGCTCAATCTATTTGTTTAA 58.091 32.000 9.73 0.00 36.65 1.52
4190 4454 6.371548 AGACTTGCGCTCAATCTATTTGTTTA 59.628 34.615 9.73 0.00 36.65 2.01
4191 4455 5.182001 AGACTTGCGCTCAATCTATTTGTTT 59.818 36.000 9.73 0.00 36.65 2.83
4192 4456 4.697352 AGACTTGCGCTCAATCTATTTGTT 59.303 37.500 9.73 0.00 36.65 2.83
4193 4457 4.256920 AGACTTGCGCTCAATCTATTTGT 58.743 39.130 9.73 0.00 36.65 2.83
4194 4458 4.871993 AGACTTGCGCTCAATCTATTTG 57.128 40.909 9.73 0.00 36.61 2.32
4195 4459 4.697352 ACAAGACTTGCGCTCAATCTATTT 59.303 37.500 15.24 0.00 0.00 1.40
4196 4460 4.256920 ACAAGACTTGCGCTCAATCTATT 58.743 39.130 15.24 0.00 0.00 1.73
4197 4461 3.866651 ACAAGACTTGCGCTCAATCTAT 58.133 40.909 15.24 0.00 0.00 1.98
4198 4462 3.319137 ACAAGACTTGCGCTCAATCTA 57.681 42.857 15.24 0.00 0.00 1.98
4199 4463 2.175878 ACAAGACTTGCGCTCAATCT 57.824 45.000 15.24 3.42 0.00 2.40
4200 4464 2.975851 CAAACAAGACTTGCGCTCAATC 59.024 45.455 15.24 0.76 0.00 2.67
4201 4465 2.287788 CCAAACAAGACTTGCGCTCAAT 60.288 45.455 15.24 0.00 0.00 2.57
4202 4466 1.065401 CCAAACAAGACTTGCGCTCAA 59.935 47.619 15.24 0.00 0.00 3.02
4203 4467 0.662619 CCAAACAAGACTTGCGCTCA 59.337 50.000 15.24 0.00 0.00 4.26
4204 4468 0.661483 GCCAAACAAGACTTGCGCTC 60.661 55.000 15.24 0.00 0.00 5.03
4205 4469 1.360192 GCCAAACAAGACTTGCGCT 59.640 52.632 15.24 0.00 0.00 5.92
4206 4470 1.661509 GGCCAAACAAGACTTGCGC 60.662 57.895 15.24 0.00 0.00 6.09
4207 4471 1.370414 CGGCCAAACAAGACTTGCG 60.370 57.895 15.24 5.75 0.00 4.85
4208 4472 1.661509 GCGGCCAAACAAGACTTGC 60.662 57.895 15.24 0.41 0.00 4.01
4209 4473 1.007387 GGCGGCCAAACAAGACTTG 60.007 57.895 15.62 13.77 0.00 3.16
4210 4474 1.040339 TTGGCGGCCAAACAAGACTT 61.040 50.000 31.03 0.00 40.92 3.01
4211 4475 1.454847 TTGGCGGCCAAACAAGACT 60.455 52.632 31.03 0.00 40.92 3.24
4212 4476 3.124686 TTGGCGGCCAAACAAGAC 58.875 55.556 31.03 0.00 40.92 3.01
4225 4489 3.129502 TCTGCTGCTGCGATTGGC 61.130 61.111 11.21 0.00 43.34 4.52
4226 4490 2.789917 GTCTGCTGCTGCGATTGG 59.210 61.111 11.21 0.00 43.34 3.16
4227 4491 2.398429 CGTCTGCTGCTGCGATTG 59.602 61.111 11.21 1.70 43.34 2.67
4228 4492 3.494336 GCGTCTGCTGCTGCGATT 61.494 61.111 20.48 0.00 43.34 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.