Multiple sequence alignment - TraesCS5A01G396500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G396500 chr5A 100.000 8094 0 0 1 8094 591312579 591320672 0.000000e+00 14947
1 TraesCS5A01G396500 chr5A 73.684 1273 254 56 5175 6422 591154628 591155844 3.700000e-113 420
2 TraesCS5A01G396500 chr5A 100.000 133 0 0 8448 8580 591321026 591321158 6.650000e-61 246
3 TraesCS5A01G396500 chr5A 93.443 122 7 1 8454 8575 11888363 11888243 6.840000e-41 180
4 TraesCS5A01G396500 chr5A 91.406 128 10 1 8448 8575 554681319 554681445 3.180000e-39 174
5 TraesCS5A01G396500 chr5A 89.764 127 12 1 8448 8574 103574208 103574333 2.480000e-35 161
6 TraesCS5A01G396500 chr5A 88.095 84 10 0 8011 8094 11888488 11888405 5.480000e-17 100
7 TraesCS5A01G396500 chr5D 95.755 8080 164 80 1 8011 471041322 471049291 0.000000e+00 12855
8 TraesCS5A01G396500 chr5D 73.339 1279 248 68 5175 6422 470770299 470771515 3.760000e-103 387
9 TraesCS5A01G396500 chr5B 95.043 7000 200 54 1117 8011 578362816 578369773 0.000000e+00 10868
10 TraesCS5A01G396500 chr5B 79.584 1107 94 58 1 1015 578361712 578362778 0.000000e+00 671
11 TraesCS5A01G396500 chrUn 100.000 387 0 0 7297 7683 480431226 480431612 0.000000e+00 715
12 TraesCS5A01G396500 chr6A 92.623 122 9 0 8454 8575 33179618 33179497 8.850000e-40 176
13 TraesCS5A01G396500 chr6A 90.625 128 12 0 8448 8575 496622386 496622513 4.120000e-38 171
14 TraesCS5A01G396500 chr6A 89.130 92 9 1 8003 8094 563201599 563201689 7.040000e-21 113
15 TraesCS5A01G396500 chr4D 90.625 128 12 0 8448 8575 221295169 221295296 4.120000e-38 171
16 TraesCS5A01G396500 chr1A 89.844 128 13 0 8448 8575 413914060 413914187 1.920000e-36 165
17 TraesCS5A01G396500 chr1A 87.500 128 12 3 8448 8575 82152009 82151886 2.500000e-30 145
18 TraesCS5A01G396500 chr3A 89.147 129 13 1 8448 8575 103607641 103607513 8.910000e-35 159
19 TraesCS5A01G396500 chr4A 90.361 83 8 0 8008 8090 191376560 191376642 9.110000e-20 110


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G396500 chr5A 591312579 591321158 8579 False 7596.5 14947 100.0000 1 8580 2 chr5A.!!$F4 8579
1 TraesCS5A01G396500 chr5A 591154628 591155844 1216 False 420.0 420 73.6840 5175 6422 1 chr5A.!!$F3 1247
2 TraesCS5A01G396500 chr5D 471041322 471049291 7969 False 12855.0 12855 95.7550 1 8011 1 chr5D.!!$F2 8010
3 TraesCS5A01G396500 chr5D 470770299 470771515 1216 False 387.0 387 73.3390 5175 6422 1 chr5D.!!$F1 1247
4 TraesCS5A01G396500 chr5B 578361712 578369773 8061 False 5769.5 10868 87.3135 1 8011 2 chr5B.!!$F1 8010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 341 0.243907 TCCTTGCAGCAGTACTCGTC 59.756 55.000 0.00 0.00 0.00 4.20 F
1136 1251 0.535102 GAGAGGAGAGAGAGAGGCCG 60.535 65.000 0.00 0.00 0.00 6.13 F
1332 1476 0.032217 CTCTCTTCTCTCCCTGCCCT 60.032 60.000 0.00 0.00 0.00 5.19 F
2148 2337 0.097674 CGTGCTTGCTCAAGTATGCC 59.902 55.000 10.86 0.00 40.45 4.40 F
2243 2432 4.527038 TCCAAGACACTTCGTAATTCTCCT 59.473 41.667 0.00 0.00 0.00 3.69 F
2250 2439 6.391537 ACACTTCGTAATTCTCCTCTTTCTC 58.608 40.000 0.00 0.00 0.00 2.87 F
3981 4184 6.113411 CCGGGTTTACAAAATACAGAGAGAT 58.887 40.000 0.00 0.00 0.00 2.75 F
4656 4880 3.127425 AGTGCCAAACTAAGACAGGAC 57.873 47.619 0.00 0.00 37.36 3.85 F
6257 6491 2.281208 AAAAGTGGCGCCGCTGTA 60.281 55.556 41.02 12.03 36.83 2.74 F
6568 6802 2.747460 CACAGGCACACCCGATGG 60.747 66.667 0.00 0.00 39.21 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1313 1457 0.032217 AGGGCAGGGAGAGAAGAGAG 60.032 60.000 0.00 0.0 0.00 3.20 R
1986 2175 1.340114 GGAAAGCGAAGAAGGGATGGT 60.340 52.381 0.00 0.0 0.00 3.55 R
2294 2483 1.608590 ACTGGAATTTGCGTCCACTTG 59.391 47.619 0.00 0.0 40.33 3.16 R
3469 3672 3.428589 GCTTTTGGAATAGCAGCCTCAAG 60.429 47.826 0.00 0.0 37.35 3.02 R
3981 4184 8.795513 TCTTTGTTTTCATAATGCTTCATCAGA 58.204 29.630 0.00 0.0 0.00 3.27 R
4422 4646 4.479993 GCGACATGGCAGCCTCCT 62.480 66.667 14.15 0.0 0.00 3.69 R
4962 5187 3.428999 GGAAGCGAGTTCTACATGCACTA 60.429 47.826 0.00 0.0 35.25 2.74 R
6343 6577 2.513753 CATGGTTGTTCTGTAAGGCCA 58.486 47.619 5.01 0.0 0.00 5.36 R
7200 7437 0.235665 CGATGGCAAATCCGAATCCG 59.764 55.000 0.00 0.0 37.80 4.18 R
8543 8805 0.027696 ATCCCCATGAATCCCCCTCA 60.028 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 39 2.612212 AGTATTATTTGGCAAGCGGACG 59.388 45.455 0.00 0.00 0.00 4.79
46 48 1.206523 GCAAGCGGACGTTATAGGAC 58.793 55.000 0.00 0.00 0.00 3.85
61 63 1.892209 AGGACCCAAAAGTACTTGCG 58.108 50.000 9.34 3.20 0.00 4.85
81 83 2.851534 GCTAAACTGGTGCGACAAATC 58.148 47.619 0.00 0.00 0.00 2.17
82 84 2.414161 GCTAAACTGGTGCGACAAATCC 60.414 50.000 0.00 0.00 0.00 3.01
88 90 1.139520 GTGCGACAAATCCCATGCC 59.860 57.895 0.00 0.00 0.00 4.40
92 94 2.016604 GCGACAAATCCCATGCCTACA 61.017 52.381 0.00 0.00 0.00 2.74
122 124 5.865085 AGTAGGTTTAGCACAATGAGAACA 58.135 37.500 0.00 0.00 0.00 3.18
134 136 1.570813 TGAGAACACGACACAAGCAG 58.429 50.000 0.00 0.00 0.00 4.24
138 140 2.159099 AGAACACGACACAAGCAGAAGA 60.159 45.455 0.00 0.00 0.00 2.87
140 142 2.138320 ACACGACACAAGCAGAAGATG 58.862 47.619 0.00 0.00 0.00 2.90
226 232 3.255642 ACATTAACACATGCACTGTTCCC 59.744 43.478 13.54 0.00 35.29 3.97
228 234 1.321474 AACACATGCACTGTTCCCAG 58.679 50.000 5.88 0.00 44.68 4.45
241 247 0.323360 TTCCCAGGCCATAAGTGCAC 60.323 55.000 9.40 9.40 0.00 4.57
244 250 1.647545 CCAGGCCATAAGTGCACACG 61.648 60.000 21.04 3.68 36.20 4.49
275 281 2.802719 ACATGTCCAACCACCATTACC 58.197 47.619 0.00 0.00 0.00 2.85
281 287 2.027929 TCCAACCACCATTACCAGTACG 60.028 50.000 0.00 0.00 0.00 3.67
282 288 2.289819 CCAACCACCATTACCAGTACGT 60.290 50.000 0.00 0.00 0.00 3.57
289 304 5.163530 CCACCATTACCAGTACGTGTACATA 60.164 44.000 12.32 0.01 38.48 2.29
294 309 3.424703 ACCAGTACGTGTACATACCACT 58.575 45.455 12.32 0.00 38.48 4.00
296 311 4.637534 ACCAGTACGTGTACATACCACTAG 59.362 45.833 12.32 0.00 38.48 2.57
308 323 4.645588 ACATACCACTAGAGTACTCCTTGC 59.354 45.833 19.38 0.00 0.00 4.01
309 324 3.170991 ACCACTAGAGTACTCCTTGCA 57.829 47.619 19.38 0.00 0.00 4.08
310 325 3.093057 ACCACTAGAGTACTCCTTGCAG 58.907 50.000 19.38 10.96 0.00 4.41
311 326 2.159170 CCACTAGAGTACTCCTTGCAGC 60.159 54.545 19.38 0.00 0.00 5.25
321 341 0.243907 TCCTTGCAGCAGTACTCGTC 59.756 55.000 0.00 0.00 0.00 4.20
335 355 1.269998 ACTCGTCGAAAGGAGTCCAAG 59.730 52.381 12.86 0.00 45.13 3.61
402 426 2.277756 GGCGTGTACGTAGCGAGG 60.278 66.667 19.53 4.59 42.22 4.63
407 431 1.676635 TGTACGTAGCGAGGCCACT 60.677 57.895 5.01 1.03 0.00 4.00
408 432 1.226603 GTACGTAGCGAGGCCACTG 60.227 63.158 5.01 0.00 0.00 3.66
409 433 1.676635 TACGTAGCGAGGCCACTGT 60.677 57.895 5.01 0.00 0.00 3.55
410 434 1.651240 TACGTAGCGAGGCCACTGTC 61.651 60.000 5.01 0.00 0.00 3.51
411 435 2.184579 GTAGCGAGGCCACTGTCC 59.815 66.667 5.01 0.00 0.00 4.02
412 436 2.283604 TAGCGAGGCCACTGTCCA 60.284 61.111 5.01 0.00 0.00 4.02
413 437 2.351244 TAGCGAGGCCACTGTCCAG 61.351 63.158 5.01 0.00 0.00 3.86
414 438 4.767255 GCGAGGCCACTGTCCAGG 62.767 72.222 5.01 0.00 0.00 4.45
474 502 0.539438 AGATGGCCGGTTTTGCAAGA 60.539 50.000 1.90 0.00 0.00 3.02
493 521 1.550524 GATTTGGAAAGGAGGTTGGGC 59.449 52.381 0.00 0.00 0.00 5.36
541 582 5.057149 TGCTGTTTGTTACTTTCTCTCTCC 58.943 41.667 0.00 0.00 0.00 3.71
542 583 4.452795 GCTGTTTGTTACTTTCTCTCTCCC 59.547 45.833 0.00 0.00 0.00 4.30
543 584 5.743422 GCTGTTTGTTACTTTCTCTCTCCCT 60.743 44.000 0.00 0.00 0.00 4.20
544 585 5.855045 TGTTTGTTACTTTCTCTCTCCCTC 58.145 41.667 0.00 0.00 0.00 4.30
545 586 5.221661 TGTTTGTTACTTTCTCTCTCCCTCC 60.222 44.000 0.00 0.00 0.00 4.30
546 587 3.442076 TGTTACTTTCTCTCTCCCTCCC 58.558 50.000 0.00 0.00 0.00 4.30
612 653 2.173569 CTCCCAAGTCCCAATCCCTAAG 59.826 54.545 0.00 0.00 0.00 2.18
642 683 6.442541 TCCTCCATTACTCTAAACAAACCA 57.557 37.500 0.00 0.00 0.00 3.67
643 684 6.843752 TCCTCCATTACTCTAAACAAACCAA 58.156 36.000 0.00 0.00 0.00 3.67
644 685 6.713450 TCCTCCATTACTCTAAACAAACCAAC 59.287 38.462 0.00 0.00 0.00 3.77
653 694 1.687563 AACAAACCAACCCGAGGAAG 58.312 50.000 0.00 0.00 0.00 3.46
665 706 3.087370 CCGAGGAAGGGGAAAAGAAAT 57.913 47.619 0.00 0.00 0.00 2.17
666 707 2.755103 CCGAGGAAGGGGAAAAGAAATG 59.245 50.000 0.00 0.00 0.00 2.32
667 708 3.561313 CCGAGGAAGGGGAAAAGAAATGA 60.561 47.826 0.00 0.00 0.00 2.57
668 709 3.691609 CGAGGAAGGGGAAAAGAAATGAG 59.308 47.826 0.00 0.00 0.00 2.90
669 710 3.435275 AGGAAGGGGAAAAGAAATGAGC 58.565 45.455 0.00 0.00 0.00 4.26
693 742 4.384056 GTCCTCATGATAACTGTCCCATG 58.616 47.826 0.00 9.37 38.12 3.66
743 796 9.533253 TTATATCATATCATATCACGCACTTGG 57.467 33.333 0.00 0.00 0.00 3.61
745 798 5.852827 TCATATCATATCACGCACTTGGAA 58.147 37.500 0.00 0.00 0.00 3.53
768 855 6.760161 AAGAAAGAGAAAAACGTAGTACCG 57.240 37.500 0.00 0.00 45.00 4.02
770 857 2.951726 AGAGAAAAACGTAGTACCGCC 58.048 47.619 0.00 0.00 45.00 6.13
771 858 1.650645 GAGAAAAACGTAGTACCGCCG 59.349 52.381 0.00 0.00 45.00 6.46
842 929 3.780804 TGCGGTGGCAGGTATAATATT 57.219 42.857 0.00 0.00 46.21 1.28
846 933 3.008594 CGGTGGCAGGTATAATATTGGGA 59.991 47.826 0.00 0.00 0.00 4.37
847 934 4.505918 CGGTGGCAGGTATAATATTGGGAA 60.506 45.833 0.00 0.00 0.00 3.97
938 1049 2.037620 ATCAGCATCAGGGCGGAGAC 62.038 60.000 0.00 0.00 41.15 3.36
950 1061 4.571243 GGAGACGGAGAGGGAGAG 57.429 66.667 0.00 0.00 0.00 3.20
951 1062 1.152839 GGAGACGGAGAGGGAGAGG 60.153 68.421 0.00 0.00 0.00 3.69
952 1063 1.152839 GAGACGGAGAGGGAGAGGG 60.153 68.421 0.00 0.00 0.00 4.30
953 1064 1.619975 AGACGGAGAGGGAGAGGGA 60.620 63.158 0.00 0.00 0.00 4.20
954 1065 1.152839 GACGGAGAGGGAGAGGGAG 60.153 68.421 0.00 0.00 0.00 4.30
955 1066 1.619975 ACGGAGAGGGAGAGGGAGA 60.620 63.158 0.00 0.00 0.00 3.71
956 1067 1.150536 CGGAGAGGGAGAGGGAGAG 59.849 68.421 0.00 0.00 0.00 3.20
957 1068 1.541672 GGAGAGGGAGAGGGAGAGG 59.458 68.421 0.00 0.00 0.00 3.69
958 1069 1.541672 GAGAGGGAGAGGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
959 1070 0.996762 GAGAGGGAGAGGGAGAGGGA 60.997 65.000 0.00 0.00 0.00 4.20
960 1071 0.998945 AGAGGGAGAGGGAGAGGGAG 60.999 65.000 0.00 0.00 0.00 4.30
961 1072 2.018086 AGGGAGAGGGAGAGGGAGG 61.018 68.421 0.00 0.00 0.00 4.30
962 1073 2.612251 GGAGAGGGAGAGGGAGGG 59.388 72.222 0.00 0.00 0.00 4.30
1022 1137 4.145365 TCGTTTAGAGAGAGAGAGAGGG 57.855 50.000 0.00 0.00 0.00 4.30
1023 1138 3.520317 TCGTTTAGAGAGAGAGAGAGGGT 59.480 47.826 0.00 0.00 0.00 4.34
1024 1139 3.625764 CGTTTAGAGAGAGAGAGAGGGTG 59.374 52.174 0.00 0.00 0.00 4.61
1025 1140 3.943671 TTAGAGAGAGAGAGAGGGTGG 57.056 52.381 0.00 0.00 0.00 4.61
1026 1141 0.926293 AGAGAGAGAGAGAGGGTGGG 59.074 60.000 0.00 0.00 0.00 4.61
1027 1142 0.923358 GAGAGAGAGAGAGGGTGGGA 59.077 60.000 0.00 0.00 0.00 4.37
1028 1143 0.926293 AGAGAGAGAGAGGGTGGGAG 59.074 60.000 0.00 0.00 0.00 4.30
1029 1144 0.629058 GAGAGAGAGAGGGTGGGAGT 59.371 60.000 0.00 0.00 0.00 3.85
1030 1145 1.847737 GAGAGAGAGAGGGTGGGAGTA 59.152 57.143 0.00 0.00 0.00 2.59
1031 1146 1.567175 AGAGAGAGAGGGTGGGAGTAC 59.433 57.143 0.00 0.00 0.00 2.73
1032 1147 1.567175 GAGAGAGAGGGTGGGAGTACT 59.433 57.143 0.00 0.00 0.00 2.73
1033 1148 2.778850 GAGAGAGAGGGTGGGAGTACTA 59.221 54.545 0.00 0.00 0.00 1.82
1034 1149 2.510800 AGAGAGAGGGTGGGAGTACTAC 59.489 54.545 0.00 0.00 0.00 2.73
1035 1150 2.510800 GAGAGAGGGTGGGAGTACTACT 59.489 54.545 4.77 0.00 0.00 2.57
1036 1151 3.715834 GAGAGAGGGTGGGAGTACTACTA 59.284 52.174 4.77 0.00 0.00 1.82
1037 1152 3.459227 AGAGAGGGTGGGAGTACTACTAC 59.541 52.174 13.07 13.07 0.00 2.73
1038 1153 3.459227 GAGAGGGTGGGAGTACTACTACT 59.541 52.174 19.90 2.33 35.77 2.57
1039 1154 4.639731 AGAGGGTGGGAGTACTACTACTA 58.360 47.826 19.90 0.00 32.96 1.82
1040 1155 4.659835 AGAGGGTGGGAGTACTACTACTAG 59.340 50.000 19.90 0.00 32.96 2.57
1041 1156 4.639731 AGGGTGGGAGTACTACTACTAGA 58.360 47.826 19.90 0.00 32.96 2.43
1042 1157 5.042387 AGGGTGGGAGTACTACTACTAGAA 58.958 45.833 19.90 0.00 32.96 2.10
1043 1158 5.132480 AGGGTGGGAGTACTACTACTAGAAG 59.868 48.000 19.90 0.00 32.96 2.85
1044 1159 5.131809 GGGTGGGAGTACTACTACTAGAAGA 59.868 48.000 19.90 0.00 32.96 2.87
1045 1160 6.290605 GGTGGGAGTACTACTACTAGAAGAG 58.709 48.000 19.90 0.00 32.96 2.85
1046 1161 6.099557 GGTGGGAGTACTACTACTAGAAGAGA 59.900 46.154 19.90 0.00 32.96 3.10
1071 1186 0.636647 GGTTCCATTCCATCCCCCTT 59.363 55.000 0.00 0.00 0.00 3.95
1076 1191 1.412074 CCATTCCATCCCCCTTCCTTG 60.412 57.143 0.00 0.00 0.00 3.61
1084 1199 2.525592 CCCTTCCTTGTTGCCCCA 59.474 61.111 0.00 0.00 0.00 4.96
1085 1200 1.607467 CCCTTCCTTGTTGCCCCAG 60.607 63.158 0.00 0.00 0.00 4.45
1086 1201 1.460255 CCTTCCTTGTTGCCCCAGA 59.540 57.895 0.00 0.00 0.00 3.86
1087 1202 0.610232 CCTTCCTTGTTGCCCCAGAG 60.610 60.000 0.00 0.00 0.00 3.35
1088 1203 0.610232 CTTCCTTGTTGCCCCAGAGG 60.610 60.000 0.00 0.00 39.47 3.69
1115 1230 3.711704 GAGAGAGGAGAGAGGAGAGAGAA 59.288 52.174 0.00 0.00 0.00 2.87
1136 1251 0.535102 GAGAGGAGAGAGAGAGGCCG 60.535 65.000 0.00 0.00 0.00 6.13
1177 1292 0.560688 AACCCCCAAAAGGAGCAAGA 59.439 50.000 0.00 0.00 38.24 3.02
1181 1296 2.597455 CCCCAAAAGGAGCAAGAGAAA 58.403 47.619 0.00 0.00 38.24 2.52
1186 1301 4.022503 CCAAAAGGAGCAAGAGAAAAGAGG 60.023 45.833 0.00 0.00 0.00 3.69
1308 1452 2.042843 TCTTCCTCGCCCTCCCTC 60.043 66.667 0.00 0.00 0.00 4.30
1309 1453 3.157949 CTTCCTCGCCCTCCCTCC 61.158 72.222 0.00 0.00 0.00 4.30
1310 1454 4.798682 TTCCTCGCCCTCCCTCCC 62.799 72.222 0.00 0.00 0.00 4.30
1312 1456 4.806339 CCTCGCCCTCCCTCCCTT 62.806 72.222 0.00 0.00 0.00 3.95
1313 1457 3.157949 CTCGCCCTCCCTCCCTTC 61.158 72.222 0.00 0.00 0.00 3.46
1314 1458 3.684628 TCGCCCTCCCTCCCTTCT 61.685 66.667 0.00 0.00 0.00 2.85
1315 1459 3.157949 CGCCCTCCCTCCCTTCTC 61.158 72.222 0.00 0.00 0.00 2.87
1316 1460 2.370633 GCCCTCCCTCCCTTCTCT 59.629 66.667 0.00 0.00 0.00 3.10
1329 1473 1.756538 CCTTCTCTCTTCTCTCCCTGC 59.243 57.143 0.00 0.00 0.00 4.85
1332 1476 0.032217 CTCTCTTCTCTCCCTGCCCT 60.032 60.000 0.00 0.00 0.00 5.19
1334 1478 1.970352 CTCTTCTCTCCCTGCCCTGC 61.970 65.000 0.00 0.00 0.00 4.85
1438 1606 5.400485 CAGATTTGCCTCTTTCTTTTCGTTG 59.600 40.000 0.00 0.00 0.00 4.10
1450 1618 7.817962 TCTTTCTTTTCGTTGGTTCTAGGATAG 59.182 37.037 0.00 0.00 41.04 2.08
1643 1816 6.942576 CCTGAGGTCAGAATTTCCTTTCTTTA 59.057 38.462 8.64 0.00 46.59 1.85
1645 1818 8.567285 TGAGGTCAGAATTTCCTTTCTTTATC 57.433 34.615 0.00 0.00 33.69 1.75
1655 1828 6.388619 TTCCTTTCTTTATCCTAGCTGGTT 57.611 37.500 0.00 0.00 37.07 3.67
1722 1899 4.327680 GAGCTAACACAATCCAAAGGAGT 58.672 43.478 0.00 0.00 34.05 3.85
1742 1919 2.029020 GTGGTCTTGATTTGCTTTCCCC 60.029 50.000 0.00 0.00 0.00 4.81
1813 1990 3.485463 TTCGGACCAATTTCACTCTGT 57.515 42.857 0.00 0.00 0.00 3.41
1846 2035 2.430921 CTGTCGCCGTCACTGTCC 60.431 66.667 0.00 0.00 0.00 4.02
1972 2161 2.241430 TCCTCTTGTCTAGATCCGGACA 59.759 50.000 6.12 12.49 40.17 4.02
1986 2175 3.986006 GACACCTGCCGTCCGTCA 61.986 66.667 0.00 0.00 0.00 4.35
1993 2182 4.832608 GCCGTCCGTCACCATCCC 62.833 72.222 0.00 0.00 0.00 3.85
2010 2199 1.550976 TCCCTTCTTCGCTTTCCTCTC 59.449 52.381 0.00 0.00 0.00 3.20
2120 2309 1.086634 GTCCTGCGATTGCCTCAGTC 61.087 60.000 1.50 0.00 41.78 3.51
2148 2337 0.097674 CGTGCTTGCTCAAGTATGCC 59.902 55.000 10.86 0.00 40.45 4.40
2174 2363 4.580580 CCCATCTCTGGCCTTTATTTACAC 59.419 45.833 3.32 0.00 41.64 2.90
2243 2432 4.527038 TCCAAGACACTTCGTAATTCTCCT 59.473 41.667 0.00 0.00 0.00 3.69
2250 2439 6.391537 ACACTTCGTAATTCTCCTCTTTCTC 58.608 40.000 0.00 0.00 0.00 2.87
2366 2555 9.856488 TTTGTGTTATAACTTGCTTGTTGTAAA 57.144 25.926 16.33 0.94 36.05 2.01
2367 2556 9.856488 TTGTGTTATAACTTGCTTGTTGTAAAA 57.144 25.926 16.33 5.81 36.05 1.52
2368 2557 9.856488 TGTGTTATAACTTGCTTGTTGTAAAAA 57.144 25.926 16.33 3.90 36.05 1.94
3072 3265 9.664332 TCATTGTTTTGGTAATTTATCAATGGG 57.336 29.630 3.04 0.00 40.30 4.00
3981 4184 6.113411 CCGGGTTTACAAAATACAGAGAGAT 58.887 40.000 0.00 0.00 0.00 2.75
4422 4646 4.521256 GGTTTGCTGACTACCAATAAACCA 59.479 41.667 0.00 0.00 43.31 3.67
4656 4880 3.127425 AGTGCCAAACTAAGACAGGAC 57.873 47.619 0.00 0.00 37.36 3.85
5158 5386 4.682778 TTGGTTACTGCTCTGTACTTGT 57.317 40.909 0.00 0.00 0.00 3.16
5383 5614 6.772716 TCTCCCATCAATAATTTTGCTAGACC 59.227 38.462 0.00 0.00 0.00 3.85
6257 6491 2.281208 AAAAGTGGCGCCGCTGTA 60.281 55.556 41.02 12.03 36.83 2.74
6568 6802 2.747460 CACAGGCACACCCGATGG 60.747 66.667 0.00 0.00 39.21 3.51
7199 7436 0.905357 CCTCTGATCCTGGTCGGTTT 59.095 55.000 0.00 0.00 0.00 3.27
7200 7437 1.134670 CCTCTGATCCTGGTCGGTTTC 60.135 57.143 0.00 0.00 0.00 2.78
7201 7438 0.530744 TCTGATCCTGGTCGGTTTCG 59.469 55.000 0.00 0.00 37.82 3.46
7202 7439 0.460284 CTGATCCTGGTCGGTTTCGG 60.460 60.000 0.00 0.00 36.95 4.30
7203 7440 0.901114 TGATCCTGGTCGGTTTCGGA 60.901 55.000 0.00 0.00 36.95 4.55
7204 7441 0.464452 GATCCTGGTCGGTTTCGGAT 59.536 55.000 0.00 0.00 37.20 4.18
7249 7493 5.490159 CGGTGGACTGGTATAAAGGTAAAA 58.510 41.667 0.00 0.00 0.00 1.52
7250 7494 5.939296 CGGTGGACTGGTATAAAGGTAAAAA 59.061 40.000 0.00 0.00 0.00 1.94
7251 7495 6.093082 CGGTGGACTGGTATAAAGGTAAAAAG 59.907 42.308 0.00 0.00 0.00 2.27
7720 7975 3.191371 GGTAGTTCATGGCTTGTTTGGAG 59.809 47.826 0.00 0.00 0.00 3.86
7984 8246 7.595819 TTTTTAGCAAAAGAGAGGATTTCCA 57.404 32.000 0.00 0.00 38.89 3.53
7998 8260 0.776080 TTTCCAGGGGCCTTCCTCTT 60.776 55.000 0.84 0.00 41.58 2.85
8011 8273 5.008118 GGCCTTCCTCTTCGATTTCATTAAG 59.992 44.000 0.00 0.00 0.00 1.85
8012 8274 5.008118 GCCTTCCTCTTCGATTTCATTAAGG 59.992 44.000 0.00 0.00 34.28 2.69
8013 8275 5.008118 CCTTCCTCTTCGATTTCATTAAGGC 59.992 44.000 0.00 0.00 0.00 4.35
8014 8276 4.451900 TCCTCTTCGATTTCATTAAGGCC 58.548 43.478 0.00 0.00 0.00 5.19
8015 8277 4.164221 TCCTCTTCGATTTCATTAAGGCCT 59.836 41.667 0.00 0.00 0.00 5.19
8016 8278 4.513318 CCTCTTCGATTTCATTAAGGCCTC 59.487 45.833 5.23 0.00 0.00 4.70
8017 8279 4.119862 TCTTCGATTTCATTAAGGCCTCG 58.880 43.478 5.23 1.50 0.00 4.63
8018 8280 3.536956 TCGATTTCATTAAGGCCTCGT 57.463 42.857 5.23 0.00 0.00 4.18
8019 8281 3.869065 TCGATTTCATTAAGGCCTCGTT 58.131 40.909 5.23 0.00 0.00 3.85
8020 8282 3.621268 TCGATTTCATTAAGGCCTCGTTG 59.379 43.478 5.23 3.82 0.00 4.10
8021 8283 3.242739 CGATTTCATTAAGGCCTCGTTGG 60.243 47.826 5.23 0.00 39.35 3.77
8022 8284 3.426787 TTTCATTAAGGCCTCGTTGGA 57.573 42.857 5.23 0.00 38.35 3.53
8028 8290 4.410400 GGCCTCGTTGGACAGGGG 62.410 72.222 0.00 0.00 45.54 4.79
8029 8291 3.319198 GCCTCGTTGGACAGGGGA 61.319 66.667 1.63 0.00 38.35 4.81
8030 8292 2.982130 CCTCGTTGGACAGGGGAG 59.018 66.667 0.00 0.00 38.35 4.30
8031 8293 2.660064 CCTCGTTGGACAGGGGAGG 61.660 68.421 0.00 0.00 38.43 4.30
8032 8294 2.606519 TCGTTGGACAGGGGAGGG 60.607 66.667 0.00 0.00 0.00 4.30
8033 8295 2.928396 CGTTGGACAGGGGAGGGT 60.928 66.667 0.00 0.00 0.00 4.34
8034 8296 2.526046 CGTTGGACAGGGGAGGGTT 61.526 63.158 0.00 0.00 0.00 4.11
8035 8297 1.851267 GTTGGACAGGGGAGGGTTT 59.149 57.895 0.00 0.00 0.00 3.27
8036 8298 0.539669 GTTGGACAGGGGAGGGTTTG 60.540 60.000 0.00 0.00 0.00 2.93
8037 8299 2.035783 GGACAGGGGAGGGTTTGC 59.964 66.667 0.00 0.00 0.00 3.68
8038 8300 2.359975 GACAGGGGAGGGTTTGCG 60.360 66.667 0.00 0.00 0.00 4.85
8039 8301 3.920093 GACAGGGGAGGGTTTGCGG 62.920 68.421 0.00 0.00 0.00 5.69
8058 8320 2.366972 CCCGGAGTGAAGGGGGAT 60.367 66.667 0.73 0.00 43.90 3.85
8059 8321 2.444256 CCCGGAGTGAAGGGGGATC 61.444 68.421 0.73 0.00 43.90 3.36
8060 8322 1.383248 CCGGAGTGAAGGGGGATCT 60.383 63.158 0.00 0.00 0.00 2.75
8061 8323 1.690219 CCGGAGTGAAGGGGGATCTG 61.690 65.000 0.00 0.00 0.00 2.90
8062 8324 0.687757 CGGAGTGAAGGGGGATCTGA 60.688 60.000 0.00 0.00 0.00 3.27
8063 8325 1.127343 GGAGTGAAGGGGGATCTGAG 58.873 60.000 0.00 0.00 0.00 3.35
8064 8326 1.343478 GGAGTGAAGGGGGATCTGAGA 60.343 57.143 0.00 0.00 0.00 3.27
8065 8327 2.038659 GAGTGAAGGGGGATCTGAGAG 58.961 57.143 0.00 0.00 0.00 3.20
8066 8328 1.127343 GTGAAGGGGGATCTGAGAGG 58.873 60.000 0.00 0.00 0.00 3.69
8067 8329 1.018840 TGAAGGGGGATCTGAGAGGA 58.981 55.000 0.00 0.00 0.00 3.71
8068 8330 1.582624 TGAAGGGGGATCTGAGAGGAT 59.417 52.381 0.00 0.00 0.00 3.24
8069 8331 2.021639 TGAAGGGGGATCTGAGAGGATT 60.022 50.000 0.00 0.00 0.00 3.01
8070 8332 2.906169 AGGGGGATCTGAGAGGATTT 57.094 50.000 0.00 0.00 0.00 2.17
8071 8333 2.416638 AGGGGGATCTGAGAGGATTTG 58.583 52.381 0.00 0.00 0.00 2.32
8072 8334 1.423161 GGGGGATCTGAGAGGATTTGG 59.577 57.143 0.00 0.00 0.00 3.28
8073 8335 2.131023 GGGGATCTGAGAGGATTTGGT 58.869 52.381 0.00 0.00 0.00 3.67
8074 8336 2.511637 GGGGATCTGAGAGGATTTGGTT 59.488 50.000 0.00 0.00 0.00 3.67
8075 8337 3.716872 GGGGATCTGAGAGGATTTGGTTA 59.283 47.826 0.00 0.00 0.00 2.85
8076 8338 4.166144 GGGGATCTGAGAGGATTTGGTTAA 59.834 45.833 0.00 0.00 0.00 2.01
8077 8339 5.163045 GGGGATCTGAGAGGATTTGGTTAAT 60.163 44.000 0.00 0.00 0.00 1.40
8078 8340 6.000840 GGGATCTGAGAGGATTTGGTTAATC 58.999 44.000 0.00 0.00 41.64 1.75
8090 8352 7.888250 GATTTGGTTAATCCTTCTCTTCCAT 57.112 36.000 0.00 0.00 37.29 3.41
8091 8353 7.888250 ATTTGGTTAATCCTTCTCTTCCATC 57.112 36.000 0.00 0.00 37.07 3.51
8092 8354 5.373812 TGGTTAATCCTTCTCTTCCATCC 57.626 43.478 0.00 0.00 37.07 3.51
8093 8355 4.788075 TGGTTAATCCTTCTCTTCCATCCA 59.212 41.667 0.00 0.00 37.07 3.41
8471 8733 7.997773 AAACCTCTCTATTTGGTTAAACCTC 57.002 36.000 0.00 0.00 42.53 3.85
8472 8734 6.063496 ACCTCTCTATTTGGTTAAACCTCC 57.937 41.667 0.00 0.00 39.58 4.30
8473 8735 5.791141 ACCTCTCTATTTGGTTAAACCTCCT 59.209 40.000 0.00 0.00 39.58 3.69
8474 8736 6.116126 CCTCTCTATTTGGTTAAACCTCCTG 58.884 44.000 0.00 0.00 39.58 3.86
8475 8737 5.497474 TCTCTATTTGGTTAAACCTCCTGC 58.503 41.667 0.00 0.00 39.58 4.85
8476 8738 5.013704 TCTCTATTTGGTTAAACCTCCTGCA 59.986 40.000 0.00 0.00 39.58 4.41
8477 8739 5.636123 TCTATTTGGTTAAACCTCCTGCAA 58.364 37.500 0.00 0.00 39.58 4.08
8478 8740 4.600692 ATTTGGTTAAACCTCCTGCAAC 57.399 40.909 0.00 0.00 39.58 4.17
8479 8741 2.738587 TGGTTAAACCTCCTGCAACA 57.261 45.000 0.00 0.00 39.58 3.33
8480 8742 2.582052 TGGTTAAACCTCCTGCAACAG 58.418 47.619 0.00 0.00 39.58 3.16
8481 8743 1.269723 GGTTAAACCTCCTGCAACAGC 59.730 52.381 0.00 0.00 34.73 4.40
8482 8744 1.953686 GTTAAACCTCCTGCAACAGCA 59.046 47.619 0.00 0.00 36.69 4.41
8483 8745 5.159721 GGTTAAACCTCCTGCAACAGCAG 62.160 52.174 10.36 10.36 44.11 4.24
8490 8752 4.401014 TGCAACAGCAGCAGCATA 57.599 50.000 3.17 0.00 45.49 3.14
8491 8753 2.177044 TGCAACAGCAGCAGCATAG 58.823 52.632 3.17 0.00 45.49 2.23
8492 8754 1.310216 TGCAACAGCAGCAGCATAGG 61.310 55.000 3.17 0.00 45.49 2.57
8493 8755 1.028330 GCAACAGCAGCAGCATAGGA 61.028 55.000 3.17 0.00 45.49 2.94
8494 8756 1.456296 CAACAGCAGCAGCATAGGAA 58.544 50.000 3.17 0.00 45.49 3.36
8495 8757 1.400846 CAACAGCAGCAGCATAGGAAG 59.599 52.381 3.17 0.00 45.49 3.46
8496 8758 0.747283 ACAGCAGCAGCATAGGAAGC 60.747 55.000 3.17 0.00 45.49 3.86
8497 8759 1.523258 AGCAGCAGCATAGGAAGCG 60.523 57.895 3.17 0.00 45.49 4.68
8498 8760 1.817099 GCAGCAGCATAGGAAGCGT 60.817 57.895 0.00 0.00 41.58 5.07
8499 8761 1.770085 GCAGCAGCATAGGAAGCGTC 61.770 60.000 0.00 0.00 41.58 5.19
8500 8762 1.144936 AGCAGCATAGGAAGCGTCC 59.855 57.895 11.15 11.15 45.35 4.79
8520 8782 1.956477 CAGTTTTCTGGGTGTCTTGGG 59.044 52.381 0.00 0.00 43.61 4.12
8521 8783 1.133482 AGTTTTCTGGGTGTCTTGGGG 60.133 52.381 0.00 0.00 0.00 4.96
8522 8784 0.187361 TTTTCTGGGTGTCTTGGGGG 59.813 55.000 0.00 0.00 0.00 5.40
8538 8800 2.597578 GGGGGTTTTCTGTACCACAT 57.402 50.000 0.00 0.00 41.02 3.21
8539 8801 2.167662 GGGGGTTTTCTGTACCACATG 58.832 52.381 0.00 0.00 41.02 3.21
8540 8802 2.167662 GGGGTTTTCTGTACCACATGG 58.832 52.381 0.00 0.00 38.98 3.66
8541 8803 2.224917 GGGGTTTTCTGTACCACATGGA 60.225 50.000 4.53 0.00 38.98 3.41
8542 8804 3.563479 GGGGTTTTCTGTACCACATGGAT 60.563 47.826 4.53 0.00 38.98 3.41
8543 8805 4.086457 GGGTTTTCTGTACCACATGGATT 58.914 43.478 4.53 0.00 37.40 3.01
8544 8806 4.082245 GGGTTTTCTGTACCACATGGATTG 60.082 45.833 4.53 0.00 37.40 2.67
8545 8807 4.764823 GGTTTTCTGTACCACATGGATTGA 59.235 41.667 4.53 0.00 38.94 2.57
8546 8808 5.106157 GGTTTTCTGTACCACATGGATTGAG 60.106 44.000 4.53 0.00 38.94 3.02
8547 8809 3.912496 TCTGTACCACATGGATTGAGG 57.088 47.619 4.53 0.00 41.48 3.86
8548 8810 2.505407 TCTGTACCACATGGATTGAGGG 59.495 50.000 4.53 0.00 40.15 4.30
8549 8811 1.563879 TGTACCACATGGATTGAGGGG 59.436 52.381 4.53 0.00 40.15 4.79
8550 8812 1.133792 GTACCACATGGATTGAGGGGG 60.134 57.143 4.53 0.00 40.15 5.40
8551 8813 0.552367 ACCACATGGATTGAGGGGGA 60.552 55.000 4.53 0.00 40.15 4.81
8552 8814 0.855598 CCACATGGATTGAGGGGGAT 59.144 55.000 0.00 0.00 37.39 3.85
8553 8815 1.218704 CCACATGGATTGAGGGGGATT 59.781 52.381 0.00 0.00 37.39 3.01
8554 8816 2.590821 CACATGGATTGAGGGGGATTC 58.409 52.381 0.00 0.00 0.00 2.52
8555 8817 2.091720 CACATGGATTGAGGGGGATTCA 60.092 50.000 0.00 0.00 0.00 2.57
8556 8818 2.793564 ACATGGATTGAGGGGGATTCAT 59.206 45.455 0.00 0.00 0.00 2.57
8557 8819 3.162666 CATGGATTGAGGGGGATTCATG 58.837 50.000 0.00 0.00 34.05 3.07
8558 8820 1.500303 TGGATTGAGGGGGATTCATGG 59.500 52.381 0.00 0.00 0.00 3.66
8559 8821 1.203100 GGATTGAGGGGGATTCATGGG 60.203 57.143 0.00 0.00 0.00 4.00
8560 8822 0.862554 ATTGAGGGGGATTCATGGGG 59.137 55.000 0.00 0.00 0.00 4.96
8561 8823 0.254059 TTGAGGGGGATTCATGGGGA 60.254 55.000 0.00 0.00 0.00 4.81
8562 8824 0.027696 TGAGGGGGATTCATGGGGAT 60.028 55.000 0.00 0.00 0.00 3.85
8563 8825 0.701147 GAGGGGGATTCATGGGGATC 59.299 60.000 0.00 0.00 0.00 3.36
8564 8826 1.136329 AGGGGGATTCATGGGGATCG 61.136 60.000 0.00 0.00 0.00 3.69
8565 8827 1.380302 GGGGATTCATGGGGATCGG 59.620 63.158 0.00 0.00 0.00 4.18
8566 8828 1.133809 GGGGATTCATGGGGATCGGA 61.134 60.000 0.00 0.00 0.00 4.55
8567 8829 0.326264 GGGATTCATGGGGATCGGAG 59.674 60.000 0.00 0.00 0.00 4.63
8568 8830 1.352083 GGATTCATGGGGATCGGAGA 58.648 55.000 0.00 0.00 45.75 3.71
8569 8831 1.277557 GGATTCATGGGGATCGGAGAG 59.722 57.143 0.00 0.00 43.63 3.20
8570 8832 1.277557 GATTCATGGGGATCGGAGAGG 59.722 57.143 0.00 0.00 43.63 3.69
8571 8833 0.264657 TTCATGGGGATCGGAGAGGA 59.735 55.000 0.00 0.00 43.63 3.71
8572 8834 0.489117 TCATGGGGATCGGAGAGGAT 59.511 55.000 0.00 0.00 43.63 3.24
8573 8835 1.132721 TCATGGGGATCGGAGAGGATT 60.133 52.381 0.00 0.00 43.63 3.01
8574 8836 1.002888 CATGGGGATCGGAGAGGATTG 59.997 57.143 0.00 0.00 43.63 2.67
8575 8837 0.264657 TGGGGATCGGAGAGGATTGA 59.735 55.000 0.00 0.00 43.63 2.57
8576 8838 1.132721 TGGGGATCGGAGAGGATTGAT 60.133 52.381 0.00 0.00 43.63 2.57
8577 8839 2.111792 TGGGGATCGGAGAGGATTGATA 59.888 50.000 0.00 0.00 43.63 2.15
8578 8840 3.246130 TGGGGATCGGAGAGGATTGATAT 60.246 47.826 0.00 0.00 43.63 1.63
8579 8841 3.133721 GGGGATCGGAGAGGATTGATATG 59.866 52.174 0.00 0.00 43.63 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 27 0.179094 CCTATAACGTCCGCTTGCCA 60.179 55.000 0.00 0.00 0.00 4.92
37 39 5.064325 CGCAAGTACTTTTGGGTCCTATAAC 59.936 44.000 5.07 0.00 36.56 1.89
46 48 3.252458 AGTTTAGCGCAAGTACTTTTGGG 59.748 43.478 11.47 6.32 42.11 4.12
61 63 2.414161 GGATTTGTCGCACCAGTTTAGC 60.414 50.000 0.00 0.00 0.00 3.09
81 83 5.248640 CCTACTTTCATATGTAGGCATGGG 58.751 45.833 1.90 0.00 46.01 4.00
88 90 8.942338 TGTGCTAAACCTACTTTCATATGTAG 57.058 34.615 1.90 4.52 36.75 2.74
92 94 9.113838 CTCATTGTGCTAAACCTACTTTCATAT 57.886 33.333 0.00 0.00 0.00 1.78
105 107 4.025229 GTGTCGTGTTCTCATTGTGCTAAA 60.025 41.667 0.00 0.00 0.00 1.85
109 111 1.597195 TGTGTCGTGTTCTCATTGTGC 59.403 47.619 0.00 0.00 0.00 4.57
122 124 2.802816 GTTCATCTTCTGCTTGTGTCGT 59.197 45.455 0.00 0.00 0.00 4.34
195 200 3.426191 GCATGTGTTAATGTGTTGCTGTG 59.574 43.478 0.00 0.00 0.00 3.66
226 232 0.673333 TCGTGTGCACTTATGGCCTG 60.673 55.000 19.41 0.00 0.00 4.85
228 234 1.094785 ATTCGTGTGCACTTATGGCC 58.905 50.000 19.41 0.00 0.00 5.36
241 247 5.544136 TGGACATGTTGAATGTATTCGTG 57.456 39.130 0.00 0.66 39.62 4.35
244 250 6.092748 GTGGTTGGACATGTTGAATGTATTC 58.907 40.000 0.00 0.00 37.31 1.75
275 281 5.583854 ACTCTAGTGGTATGTACACGTACTG 59.416 44.000 0.00 0.00 43.41 2.74
281 287 6.355747 AGGAGTACTCTAGTGGTATGTACAC 58.644 44.000 21.88 0.09 36.80 2.90
282 288 6.572182 AGGAGTACTCTAGTGGTATGTACA 57.428 41.667 21.88 0.00 36.80 2.90
289 304 3.093057 CTGCAAGGAGTACTCTAGTGGT 58.907 50.000 21.88 0.00 0.00 4.16
308 323 1.199327 TCCTTTCGACGAGTACTGCTG 59.801 52.381 0.00 0.00 0.00 4.41
309 324 1.469308 CTCCTTTCGACGAGTACTGCT 59.531 52.381 0.00 0.00 0.00 4.24
310 325 1.199558 ACTCCTTTCGACGAGTACTGC 59.800 52.381 0.00 0.00 37.58 4.40
311 326 2.159544 GGACTCCTTTCGACGAGTACTG 60.160 54.545 0.00 0.00 39.44 2.74
321 341 2.143925 GGTTGTCTTGGACTCCTTTCG 58.856 52.381 0.00 0.00 33.15 3.46
335 355 3.160545 CAAATGTATCAACGCGGTTGTC 58.839 45.455 12.47 8.52 43.23 3.18
402 426 0.980231 ATCTCCTCCTGGACAGTGGC 60.980 60.000 0.00 0.00 37.46 5.01
429 453 2.202987 CTCCCCTCGTGATGCTGC 60.203 66.667 0.00 0.00 0.00 5.25
430 454 2.503061 CCTCCCCTCGTGATGCTG 59.497 66.667 0.00 0.00 0.00 4.41
431 455 2.611964 ATCCCTCCCCTCGTGATGCT 62.612 60.000 0.00 0.00 0.00 3.79
474 502 1.644509 GCCCAACCTCCTTTCCAAAT 58.355 50.000 0.00 0.00 0.00 2.32
520 558 5.859495 AGGGAGAGAGAAAGTAACAAACAG 58.141 41.667 0.00 0.00 0.00 3.16
524 562 3.838903 GGGAGGGAGAGAGAAAGTAACAA 59.161 47.826 0.00 0.00 0.00 2.83
560 601 1.115326 ACCCTTGGCTTTGCTTCCAC 61.115 55.000 0.00 0.00 30.97 4.02
561 602 1.114722 CACCCTTGGCTTTGCTTCCA 61.115 55.000 0.00 0.00 0.00 3.53
612 653 5.961396 TTAGAGTAATGGAGGATACGAGC 57.039 43.478 0.00 0.00 46.39 5.03
642 683 0.404426 CTTTTCCCCTTCCTCGGGTT 59.596 55.000 0.00 0.00 43.06 4.11
643 684 0.475048 TCTTTTCCCCTTCCTCGGGT 60.475 55.000 0.00 0.00 43.06 5.28
644 685 0.696501 TTCTTTTCCCCTTCCTCGGG 59.303 55.000 0.00 0.00 44.27 5.14
653 694 1.472878 GACGGCTCATTTCTTTTCCCC 59.527 52.381 0.00 0.00 0.00 4.81
655 696 2.420372 GAGGACGGCTCATTTCTTTTCC 59.580 50.000 0.00 0.00 0.00 3.13
660 701 1.833630 TCATGAGGACGGCTCATTTCT 59.166 47.619 0.00 0.00 39.29 2.52
661 702 2.315925 TCATGAGGACGGCTCATTTC 57.684 50.000 0.00 0.00 39.29 2.17
663 704 3.389329 AGTTATCATGAGGACGGCTCATT 59.611 43.478 0.09 0.00 39.29 2.57
665 706 2.101415 CAGTTATCATGAGGACGGCTCA 59.899 50.000 0.09 0.00 35.13 4.26
666 707 2.101582 ACAGTTATCATGAGGACGGCTC 59.898 50.000 0.09 0.00 0.00 4.70
667 708 2.101582 GACAGTTATCATGAGGACGGCT 59.898 50.000 0.09 0.00 0.00 5.52
668 709 2.474816 GACAGTTATCATGAGGACGGC 58.525 52.381 0.09 0.00 0.00 5.68
669 710 2.224066 GGGACAGTTATCATGAGGACGG 60.224 54.545 0.09 5.76 0.00 4.79
732 785 2.872245 CTCTTTCTTTCCAAGTGCGTGA 59.128 45.455 0.00 0.00 0.00 4.35
735 788 4.552166 TTTCTCTTTCTTTCCAAGTGCG 57.448 40.909 0.00 0.00 0.00 5.34
736 789 5.230097 CGTTTTTCTCTTTCTTTCCAAGTGC 59.770 40.000 0.00 0.00 0.00 4.40
737 790 6.322491 ACGTTTTTCTCTTTCTTTCCAAGTG 58.678 36.000 0.00 0.00 0.00 3.16
738 791 6.510879 ACGTTTTTCTCTTTCTTTCCAAGT 57.489 33.333 0.00 0.00 0.00 3.16
739 792 7.694886 ACTACGTTTTTCTCTTTCTTTCCAAG 58.305 34.615 0.00 0.00 0.00 3.61
741 794 7.225341 GGTACTACGTTTTTCTCTTTCTTTCCA 59.775 37.037 0.00 0.00 0.00 3.53
743 796 7.279342 CGGTACTACGTTTTTCTCTTTCTTTC 58.721 38.462 0.00 0.00 0.00 2.62
745 798 5.176406 GCGGTACTACGTTTTTCTCTTTCTT 59.824 40.000 0.00 0.00 35.98 2.52
748 801 3.742882 GGCGGTACTACGTTTTTCTCTTT 59.257 43.478 0.00 0.00 35.98 2.52
768 855 0.034337 TGTGGAACTAGACAACCGGC 59.966 55.000 0.00 0.00 38.04 6.13
770 857 1.069513 TGGTGTGGAACTAGACAACCG 59.930 52.381 0.00 0.00 38.04 4.44
771 858 2.367567 TCTGGTGTGGAACTAGACAACC 59.632 50.000 0.00 4.50 41.13 3.77
834 921 8.170061 CCCAGACATTTCCTTCCCAATATTATA 58.830 37.037 0.00 0.00 0.00 0.98
835 922 7.012607 CCCAGACATTTCCTTCCCAATATTAT 58.987 38.462 0.00 0.00 0.00 1.28
836 923 6.068498 ACCCAGACATTTCCTTCCCAATATTA 60.068 38.462 0.00 0.00 0.00 0.98
837 924 5.211201 CCCAGACATTTCCTTCCCAATATT 58.789 41.667 0.00 0.00 0.00 1.28
838 925 4.232820 ACCCAGACATTTCCTTCCCAATAT 59.767 41.667 0.00 0.00 0.00 1.28
839 926 3.596046 ACCCAGACATTTCCTTCCCAATA 59.404 43.478 0.00 0.00 0.00 1.90
841 928 1.786441 ACCCAGACATTTCCTTCCCAA 59.214 47.619 0.00 0.00 0.00 4.12
842 929 1.455822 ACCCAGACATTTCCTTCCCA 58.544 50.000 0.00 0.00 0.00 4.37
846 933 2.176798 TCACCAACCCAGACATTTCCTT 59.823 45.455 0.00 0.00 0.00 3.36
847 934 1.780309 TCACCAACCCAGACATTTCCT 59.220 47.619 0.00 0.00 0.00 3.36
938 1049 1.150536 CTCTCCCTCTCCCTCTCCG 59.849 68.421 0.00 0.00 0.00 4.63
945 1056 2.015726 TCCCTCCCTCTCCCTCTCC 61.016 68.421 0.00 0.00 0.00 3.71
946 1057 0.996762 TCTCCCTCCCTCTCCCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
947 1058 0.556380 TTCTCCCTCCCTCTCCCTCT 60.556 60.000 0.00 0.00 0.00 3.69
948 1059 0.565674 ATTCTCCCTCCCTCTCCCTC 59.434 60.000 0.00 0.00 0.00 4.30
949 1060 1.942882 TATTCTCCCTCCCTCTCCCT 58.057 55.000 0.00 0.00 0.00 4.20
950 1061 2.112691 TGATATTCTCCCTCCCTCTCCC 59.887 54.545 0.00 0.00 0.00 4.30
951 1062 3.076785 TCTGATATTCTCCCTCCCTCTCC 59.923 52.174 0.00 0.00 0.00 3.71
952 1063 4.396357 TCTGATATTCTCCCTCCCTCTC 57.604 50.000 0.00 0.00 0.00 3.20
953 1064 4.109435 ACATCTGATATTCTCCCTCCCTCT 59.891 45.833 0.00 0.00 0.00 3.69
954 1065 4.424842 ACATCTGATATTCTCCCTCCCTC 58.575 47.826 0.00 0.00 0.00 4.30
955 1066 4.140591 TGACATCTGATATTCTCCCTCCCT 60.141 45.833 0.00 0.00 0.00 4.20
956 1067 4.163427 TGACATCTGATATTCTCCCTCCC 58.837 47.826 0.00 0.00 0.00 4.30
957 1068 5.070981 TGTTGACATCTGATATTCTCCCTCC 59.929 44.000 0.00 0.00 0.00 4.30
958 1069 6.166984 TGTTGACATCTGATATTCTCCCTC 57.833 41.667 0.00 0.00 0.00 4.30
959 1070 6.566079 TTGTTGACATCTGATATTCTCCCT 57.434 37.500 0.00 0.00 0.00 4.20
960 1071 7.718753 AGATTTGTTGACATCTGATATTCTCCC 59.281 37.037 0.00 0.00 0.00 4.30
961 1072 8.557864 CAGATTTGTTGACATCTGATATTCTCC 58.442 37.037 8.40 0.00 46.52 3.71
962 1073 8.068977 GCAGATTTGTTGACATCTGATATTCTC 58.931 37.037 15.40 0.00 46.52 2.87
1010 1121 0.629058 ACTCCCACCCTCTCTCTCTC 59.371 60.000 0.00 0.00 0.00 3.20
1015 1130 2.575713 AGTAGTACTCCCACCCTCTCT 58.424 52.381 0.00 0.00 0.00 3.10
1017 1132 3.472892 AGTAGTAGTACTCCCACCCTCT 58.527 50.000 5.96 0.00 34.00 3.69
1018 1133 3.949586 AGTAGTAGTACTCCCACCCTC 57.050 52.381 5.96 0.00 34.00 4.30
1019 1134 4.639731 TCTAGTAGTAGTACTCCCACCCT 58.360 47.826 13.60 0.00 40.23 4.34
1020 1135 5.131809 TCTTCTAGTAGTAGTACTCCCACCC 59.868 48.000 13.60 0.00 40.23 4.61
1021 1136 6.099557 TCTCTTCTAGTAGTAGTACTCCCACC 59.900 46.154 13.60 0.00 40.23 4.61
1022 1137 7.123355 TCTCTTCTAGTAGTAGTACTCCCAC 57.877 44.000 13.60 0.00 40.23 4.61
1023 1138 7.746243 TTCTCTTCTAGTAGTAGTACTCCCA 57.254 40.000 13.60 0.00 40.23 4.37
1024 1139 7.716560 CCTTTCTCTTCTAGTAGTAGTACTCCC 59.283 44.444 13.60 0.00 40.23 4.30
1025 1140 8.267183 ACCTTTCTCTTCTAGTAGTAGTACTCC 58.733 40.741 13.60 0.00 40.23 3.85
1026 1141 9.101655 CACCTTTCTCTTCTAGTAGTAGTACTC 57.898 40.741 13.60 0.00 40.23 2.59
1027 1142 8.048514 CCACCTTTCTCTTCTAGTAGTAGTACT 58.951 40.741 14.57 14.57 42.49 2.73
1028 1143 7.828717 ACCACCTTTCTCTTCTAGTAGTAGTAC 59.171 40.741 4.51 0.00 0.00 2.73
1029 1144 7.926705 ACCACCTTTCTCTTCTAGTAGTAGTA 58.073 38.462 4.51 0.00 0.00 1.82
1030 1145 6.792424 ACCACCTTTCTCTTCTAGTAGTAGT 58.208 40.000 4.51 0.00 0.00 2.73
1031 1146 7.148035 GGAACCACCTTTCTCTTCTAGTAGTAG 60.148 44.444 0.00 0.00 35.41 2.57
1032 1147 6.662663 GGAACCACCTTTCTCTTCTAGTAGTA 59.337 42.308 0.00 0.00 35.41 1.82
1033 1148 5.481122 GGAACCACCTTTCTCTTCTAGTAGT 59.519 44.000 0.00 0.00 35.41 2.73
1034 1149 5.480772 TGGAACCACCTTTCTCTTCTAGTAG 59.519 44.000 0.00 0.00 39.86 2.57
1035 1150 5.399991 TGGAACCACCTTTCTCTTCTAGTA 58.600 41.667 0.00 0.00 39.86 1.82
1036 1151 4.232091 TGGAACCACCTTTCTCTTCTAGT 58.768 43.478 0.00 0.00 39.86 2.57
1037 1152 4.891992 TGGAACCACCTTTCTCTTCTAG 57.108 45.455 0.00 0.00 39.86 2.43
1038 1153 5.280521 GGAATGGAACCACCTTTCTCTTCTA 60.281 44.000 0.00 0.00 45.96 2.10
1039 1154 4.507512 GGAATGGAACCACCTTTCTCTTCT 60.508 45.833 0.00 0.00 45.96 2.85
1040 1155 3.759086 GGAATGGAACCACCTTTCTCTTC 59.241 47.826 0.00 0.00 45.96 2.87
1041 1156 3.140144 TGGAATGGAACCACCTTTCTCTT 59.860 43.478 0.00 0.00 45.96 2.85
1042 1157 2.716424 TGGAATGGAACCACCTTTCTCT 59.284 45.455 0.00 0.00 45.96 3.10
1043 1158 3.154827 TGGAATGGAACCACCTTTCTC 57.845 47.619 0.00 0.00 45.96 2.87
1044 1159 3.564352 GGATGGAATGGAACCACCTTTCT 60.564 47.826 0.00 0.00 45.96 2.52
1045 1160 2.760650 GGATGGAATGGAACCACCTTTC 59.239 50.000 0.00 0.00 45.97 2.62
1046 1161 2.559705 GGGATGGAATGGAACCACCTTT 60.560 50.000 0.00 0.00 40.36 3.11
1071 1186 1.463214 TCCTCTGGGGCAACAAGGA 60.463 57.895 0.00 7.65 39.74 3.36
1076 1191 1.613630 TCCTCTCCTCTGGGGCAAC 60.614 63.158 0.00 0.00 34.39 4.17
1084 1199 2.022035 TCTCTCCTCTCTCCTCTCCTCT 60.022 54.545 0.00 0.00 0.00 3.69
1085 1200 2.370189 CTCTCTCCTCTCTCCTCTCCTC 59.630 59.091 0.00 0.00 0.00 3.71
1086 1201 2.412591 CTCTCTCCTCTCTCCTCTCCT 58.587 57.143 0.00 0.00 0.00 3.69
1087 1202 1.421646 CCTCTCTCCTCTCTCCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
1088 1203 2.370189 CTCCTCTCTCCTCTCTCCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
1115 1230 1.215423 GGCCTCTCTCTCTCCTCTCTT 59.785 57.143 0.00 0.00 0.00 2.85
1177 1292 1.152271 TCCCCACTCTCCCTCTTTTCT 59.848 52.381 0.00 0.00 0.00 2.52
1181 1296 0.252467 CACTCCCCACTCTCCCTCTT 60.252 60.000 0.00 0.00 0.00 2.85
1186 1301 1.610673 TGCTCACTCCCCACTCTCC 60.611 63.158 0.00 0.00 0.00 3.71
1308 1452 2.387757 CAGGGAGAGAAGAGAGAAGGG 58.612 57.143 0.00 0.00 0.00 3.95
1309 1453 1.756538 GCAGGGAGAGAAGAGAGAAGG 59.243 57.143 0.00 0.00 0.00 3.46
1310 1454 1.756538 GGCAGGGAGAGAAGAGAGAAG 59.243 57.143 0.00 0.00 0.00 2.85
1311 1455 1.621072 GGGCAGGGAGAGAAGAGAGAA 60.621 57.143 0.00 0.00 0.00 2.87
1312 1456 0.032615 GGGCAGGGAGAGAAGAGAGA 60.033 60.000 0.00 0.00 0.00 3.10
1313 1457 0.032217 AGGGCAGGGAGAGAAGAGAG 60.032 60.000 0.00 0.00 0.00 3.20
1314 1458 0.325110 CAGGGCAGGGAGAGAAGAGA 60.325 60.000 0.00 0.00 0.00 3.10
1315 1459 1.970352 GCAGGGCAGGGAGAGAAGAG 61.970 65.000 0.00 0.00 0.00 2.85
1316 1460 1.992277 GCAGGGCAGGGAGAGAAGA 60.992 63.158 0.00 0.00 0.00 2.87
1414 1582 5.113502 ACGAAAAGAAAGAGGCAAATCTG 57.886 39.130 0.00 0.00 0.00 2.90
1643 1816 3.806949 TTGAACCAAACCAGCTAGGAT 57.193 42.857 8.91 0.00 41.22 3.24
1645 1818 5.975693 TTAATTGAACCAAACCAGCTAGG 57.024 39.130 0.00 0.00 45.67 3.02
1655 1828 4.671508 CGCGAGCAGAATTAATTGAACCAA 60.672 41.667 5.17 0.00 0.00 3.67
1684 1861 0.598680 GCTCGATTCCACGATCCAGG 60.599 60.000 0.00 0.00 41.39 4.45
1722 1899 2.247358 GGGGAAAGCAAATCAAGACCA 58.753 47.619 0.00 0.00 0.00 4.02
1726 1903 3.007182 ACACATGGGGAAAGCAAATCAAG 59.993 43.478 0.00 0.00 0.00 3.02
1800 1977 1.126846 GCGTCGGACAGAGTGAAATTG 59.873 52.381 9.10 0.00 0.00 2.32
1807 1984 4.680537 AGGGGCGTCGGACAGAGT 62.681 66.667 9.10 0.00 0.00 3.24
1846 2035 4.821589 GCCAGGAGCGGACGAAGG 62.822 72.222 0.00 0.00 0.00 3.46
1948 2137 2.235016 CGGATCTAGACAAGAGGAGGG 58.765 57.143 0.00 0.00 37.74 4.30
1955 2144 2.099921 CAGGTGTCCGGATCTAGACAAG 59.900 54.545 7.81 8.76 44.19 3.16
1986 2175 1.340114 GGAAAGCGAAGAAGGGATGGT 60.340 52.381 0.00 0.00 0.00 3.55
1993 2182 3.311486 ACAGAGAGGAAAGCGAAGAAG 57.689 47.619 0.00 0.00 0.00 2.85
2189 2378 1.632589 AACCCATTTCCAACTCCAGC 58.367 50.000 0.00 0.00 0.00 4.85
2243 2432 7.264947 GGAAAATTCCAGTTTGTTGAGAAAGA 58.735 34.615 7.32 0.00 46.76 2.52
2294 2483 1.608590 ACTGGAATTTGCGTCCACTTG 59.391 47.619 0.00 0.00 40.33 3.16
2366 2555 7.531317 ACCTAATAAAAGGCCCCAAAAATTTT 58.469 30.769 0.00 0.00 40.62 1.82
2367 2556 7.097623 ACCTAATAAAAGGCCCCAAAAATTT 57.902 32.000 0.00 0.00 40.62 1.82
2368 2557 6.712114 ACCTAATAAAAGGCCCCAAAAATT 57.288 33.333 0.00 0.00 40.62 1.82
2369 2558 6.712114 AACCTAATAAAAGGCCCCAAAAAT 57.288 33.333 0.00 0.00 40.62 1.82
2571 2761 2.126071 ACGAGTCAACCGGCGATG 60.126 61.111 9.30 7.47 0.00 3.84
3072 3265 8.418662 ACAAAAACAACTAAAGATTTAGGGGTC 58.581 33.333 14.98 0.00 43.38 4.46
3340 3538 4.389687 GCAACTTTATTTCCTGCATGTTGG 59.610 41.667 0.00 0.00 35.50 3.77
3469 3672 3.428589 GCTTTTGGAATAGCAGCCTCAAG 60.429 47.826 0.00 0.00 37.35 3.02
3981 4184 8.795513 TCTTTGTTTTCATAATGCTTCATCAGA 58.204 29.630 0.00 0.00 0.00 3.27
4422 4646 4.479993 GCGACATGGCAGCCTCCT 62.480 66.667 14.15 0.00 0.00 3.69
4656 4880 7.088589 ACCTTTATCAATCAATGGTTTCTCG 57.911 36.000 0.00 0.00 31.33 4.04
4962 5187 3.428999 GGAAGCGAGTTCTACATGCACTA 60.429 47.826 0.00 0.00 35.25 2.74
5158 5386 5.566826 GCAATATAGCGGATCAAGGACACTA 60.567 44.000 0.00 0.00 0.00 2.74
5383 5614 4.267536 ACTTGAATGATGTGGATGGTCAG 58.732 43.478 0.00 0.00 0.00 3.51
6257 6491 8.853126 TCATTCAGATCAAACAAATTTCTGACT 58.147 29.630 3.75 0.00 30.16 3.41
6343 6577 2.513753 CATGGTTGTTCTGTAAGGCCA 58.486 47.619 5.01 0.00 0.00 5.36
7158 7395 0.737715 GTTCAGGACGAAGCTGCGAT 60.738 55.000 24.02 4.77 33.09 4.58
7199 7436 1.593196 GATGGCAAATCCGAATCCGA 58.407 50.000 0.00 0.00 38.22 4.55
7200 7437 0.235665 CGATGGCAAATCCGAATCCG 59.764 55.000 0.00 0.00 37.80 4.18
7201 7438 1.532868 CTCGATGGCAAATCCGAATCC 59.467 52.381 0.00 0.00 37.80 3.01
7202 7439 2.483876 TCTCGATGGCAAATCCGAATC 58.516 47.619 0.00 0.00 37.80 2.52
7203 7440 2.620251 TCTCGATGGCAAATCCGAAT 57.380 45.000 0.00 0.00 37.80 3.34
7204 7441 2.613595 CAATCTCGATGGCAAATCCGAA 59.386 45.455 0.00 0.00 37.80 4.30
7720 7975 7.527457 ACCGAAACTGATGAAAATAAAGCTAC 58.473 34.615 0.00 0.00 0.00 3.58
7984 8246 0.621862 AATCGAAGAGGAAGGCCCCT 60.622 55.000 0.00 0.00 43.63 4.79
7998 8260 3.536956 ACGAGGCCTTAATGAAATCGA 57.463 42.857 6.77 0.00 33.23 3.59
8011 8273 4.410400 CCCCTGTCCAACGAGGCC 62.410 72.222 0.00 0.00 37.29 5.19
8012 8274 3.316573 CTCCCCTGTCCAACGAGGC 62.317 68.421 0.00 0.00 37.29 4.70
8013 8275 2.660064 CCTCCCCTGTCCAACGAGG 61.660 68.421 0.00 0.00 39.47 4.63
8014 8276 2.660064 CCCTCCCCTGTCCAACGAG 61.660 68.421 0.00 0.00 0.00 4.18
8015 8277 2.606519 CCCTCCCCTGTCCAACGA 60.607 66.667 0.00 0.00 0.00 3.85
8016 8278 2.064242 AAACCCTCCCCTGTCCAACG 62.064 60.000 0.00 0.00 0.00 4.10
8017 8279 0.539669 CAAACCCTCCCCTGTCCAAC 60.540 60.000 0.00 0.00 0.00 3.77
8018 8280 1.850549 CAAACCCTCCCCTGTCCAA 59.149 57.895 0.00 0.00 0.00 3.53
8019 8281 2.840753 GCAAACCCTCCCCTGTCCA 61.841 63.158 0.00 0.00 0.00 4.02
8020 8282 2.035783 GCAAACCCTCCCCTGTCC 59.964 66.667 0.00 0.00 0.00 4.02
8021 8283 2.359975 CGCAAACCCTCCCCTGTC 60.360 66.667 0.00 0.00 0.00 3.51
8022 8284 3.966543 CCGCAAACCCTCCCCTGT 61.967 66.667 0.00 0.00 0.00 4.00
8041 8303 2.366972 ATCCCCCTTCACTCCGGG 60.367 66.667 0.00 0.00 40.29 5.73
8042 8304 1.383248 AGATCCCCCTTCACTCCGG 60.383 63.158 0.00 0.00 0.00 5.14
8043 8305 0.687757 TCAGATCCCCCTTCACTCCG 60.688 60.000 0.00 0.00 0.00 4.63
8044 8306 1.127343 CTCAGATCCCCCTTCACTCC 58.873 60.000 0.00 0.00 0.00 3.85
8045 8307 2.038659 CTCTCAGATCCCCCTTCACTC 58.961 57.143 0.00 0.00 0.00 3.51
8046 8308 1.343884 CCTCTCAGATCCCCCTTCACT 60.344 57.143 0.00 0.00 0.00 3.41
8047 8309 1.127343 CCTCTCAGATCCCCCTTCAC 58.873 60.000 0.00 0.00 0.00 3.18
8048 8310 1.018840 TCCTCTCAGATCCCCCTTCA 58.981 55.000 0.00 0.00 0.00 3.02
8049 8311 2.414250 ATCCTCTCAGATCCCCCTTC 57.586 55.000 0.00 0.00 0.00 3.46
8050 8312 2.782341 CAAATCCTCTCAGATCCCCCTT 59.218 50.000 0.00 0.00 0.00 3.95
8051 8313 2.416638 CAAATCCTCTCAGATCCCCCT 58.583 52.381 0.00 0.00 0.00 4.79
8052 8314 1.423161 CCAAATCCTCTCAGATCCCCC 59.577 57.143 0.00 0.00 0.00 5.40
8053 8315 2.131023 ACCAAATCCTCTCAGATCCCC 58.869 52.381 0.00 0.00 0.00 4.81
8054 8316 3.941704 AACCAAATCCTCTCAGATCCC 57.058 47.619 0.00 0.00 0.00 3.85
8066 8328 7.013750 GGATGGAAGAGAAGGATTAACCAAATC 59.986 40.741 0.00 0.00 42.90 2.17
8067 8329 6.836007 GGATGGAAGAGAAGGATTAACCAAAT 59.164 38.462 0.00 0.00 42.04 2.32
8068 8330 6.187682 GGATGGAAGAGAAGGATTAACCAAA 58.812 40.000 0.00 0.00 42.04 3.28
8069 8331 5.252863 TGGATGGAAGAGAAGGATTAACCAA 59.747 40.000 0.00 0.00 42.04 3.67
8070 8332 4.788075 TGGATGGAAGAGAAGGATTAACCA 59.212 41.667 0.00 0.00 42.04 3.67
8071 8333 5.373812 TGGATGGAAGAGAAGGATTAACC 57.626 43.478 0.00 0.00 39.35 2.85
8447 8709 6.946583 GGAGGTTTAACCAAATAGAGAGGTTT 59.053 38.462 17.10 0.00 42.72 3.27
8448 8710 6.274908 AGGAGGTTTAACCAAATAGAGAGGTT 59.725 38.462 17.10 0.00 46.64 3.50
8449 8711 5.791141 AGGAGGTTTAACCAAATAGAGAGGT 59.209 40.000 17.10 0.00 41.95 3.85
8450 8712 6.116126 CAGGAGGTTTAACCAAATAGAGAGG 58.884 44.000 17.10 0.00 41.95 3.69
8451 8713 5.586643 GCAGGAGGTTTAACCAAATAGAGAG 59.413 44.000 17.10 0.00 41.95 3.20
8452 8714 5.013704 TGCAGGAGGTTTAACCAAATAGAGA 59.986 40.000 17.10 0.00 41.95 3.10
8453 8715 5.253330 TGCAGGAGGTTTAACCAAATAGAG 58.747 41.667 17.10 0.82 41.95 2.43
8454 8716 5.249780 TGCAGGAGGTTTAACCAAATAGA 57.750 39.130 17.10 0.00 41.95 1.98
8455 8717 5.242838 TGTTGCAGGAGGTTTAACCAAATAG 59.757 40.000 17.10 3.37 41.95 1.73
8456 8718 5.141182 TGTTGCAGGAGGTTTAACCAAATA 58.859 37.500 17.10 0.00 41.95 1.40
8457 8719 3.964031 TGTTGCAGGAGGTTTAACCAAAT 59.036 39.130 17.10 0.00 41.95 2.32
8458 8720 3.366396 TGTTGCAGGAGGTTTAACCAAA 58.634 40.909 17.10 0.00 41.95 3.28
8459 8721 2.955660 CTGTTGCAGGAGGTTTAACCAA 59.044 45.455 17.10 0.00 41.95 3.67
8460 8722 2.582052 CTGTTGCAGGAGGTTTAACCA 58.418 47.619 17.10 0.00 41.95 3.67
8461 8723 1.269723 GCTGTTGCAGGAGGTTTAACC 59.730 52.381 5.91 5.91 37.60 2.85
8462 8724 1.953686 TGCTGTTGCAGGAGGTTTAAC 59.046 47.619 0.00 0.00 45.31 2.01
8463 8725 2.356665 TGCTGTTGCAGGAGGTTTAA 57.643 45.000 0.00 0.00 45.31 1.52
8474 8736 1.028330 TCCTATGCTGCTGCTGTTGC 61.028 55.000 17.00 4.76 40.48 4.17
8475 8737 1.400846 CTTCCTATGCTGCTGCTGTTG 59.599 52.381 17.00 6.58 40.48 3.33
8476 8738 1.747709 CTTCCTATGCTGCTGCTGTT 58.252 50.000 17.00 4.53 40.48 3.16
8477 8739 0.747283 GCTTCCTATGCTGCTGCTGT 60.747 55.000 17.00 8.05 40.48 4.40
8478 8740 1.773054 CGCTTCCTATGCTGCTGCTG 61.773 60.000 17.00 0.77 40.48 4.41
8479 8741 1.523258 CGCTTCCTATGCTGCTGCT 60.523 57.895 17.00 5.09 40.48 4.24
8480 8742 1.770085 GACGCTTCCTATGCTGCTGC 61.770 60.000 8.89 8.89 40.20 5.25
8481 8743 1.156645 GGACGCTTCCTATGCTGCTG 61.157 60.000 1.07 0.00 39.13 4.41
8482 8744 1.144936 GGACGCTTCCTATGCTGCT 59.855 57.895 1.07 0.00 39.13 4.24
8483 8745 1.153369 TGGACGCTTCCTATGCTGC 60.153 57.895 11.01 0.00 43.31 5.25
8484 8746 0.176680 ACTGGACGCTTCCTATGCTG 59.823 55.000 11.01 0.00 43.31 4.41
8485 8747 0.905357 AACTGGACGCTTCCTATGCT 59.095 50.000 11.01 0.00 43.31 3.79
8486 8748 1.739067 AAACTGGACGCTTCCTATGC 58.261 50.000 11.01 0.00 43.31 3.14
8487 8749 3.372206 CAGAAAACTGGACGCTTCCTATG 59.628 47.826 11.01 3.67 43.31 2.23
8488 8750 3.600388 CAGAAAACTGGACGCTTCCTAT 58.400 45.455 11.01 0.00 43.31 2.57
8489 8751 3.040147 CAGAAAACTGGACGCTTCCTA 57.960 47.619 11.01 0.00 43.31 2.94
8490 8752 1.884235 CAGAAAACTGGACGCTTCCT 58.116 50.000 11.01 0.00 43.31 3.36
8499 8761 1.956477 CCAAGACACCCAGAAAACTGG 59.044 52.381 9.05 9.05 43.86 4.00
8500 8762 1.956477 CCCAAGACACCCAGAAAACTG 59.044 52.381 0.00 0.00 0.00 3.16
8501 8763 1.133482 CCCCAAGACACCCAGAAAACT 60.133 52.381 0.00 0.00 0.00 2.66
8502 8764 1.328279 CCCCAAGACACCCAGAAAAC 58.672 55.000 0.00 0.00 0.00 2.43
8503 8765 0.187361 CCCCCAAGACACCCAGAAAA 59.813 55.000 0.00 0.00 0.00 2.29
8504 8766 1.850549 CCCCCAAGACACCCAGAAA 59.149 57.895 0.00 0.00 0.00 2.52
8505 8767 3.587840 CCCCCAAGACACCCAGAA 58.412 61.111 0.00 0.00 0.00 3.02
8519 8781 2.167662 CATGTGGTACAGAAAACCCCC 58.832 52.381 0.00 0.00 41.80 5.40
8520 8782 2.167662 CCATGTGGTACAGAAAACCCC 58.832 52.381 0.00 0.00 41.80 4.95
8521 8783 3.149005 TCCATGTGGTACAGAAAACCC 57.851 47.619 0.00 0.00 41.80 4.11
8522 8784 4.764823 TCAATCCATGTGGTACAGAAAACC 59.235 41.667 0.00 0.00 41.80 3.27
8523 8785 5.106157 CCTCAATCCATGTGGTACAGAAAAC 60.106 44.000 0.00 0.00 41.80 2.43
8524 8786 5.009631 CCTCAATCCATGTGGTACAGAAAA 58.990 41.667 0.00 0.00 41.80 2.29
8525 8787 4.567537 CCCTCAATCCATGTGGTACAGAAA 60.568 45.833 0.00 0.00 41.80 2.52
8526 8788 3.054434 CCCTCAATCCATGTGGTACAGAA 60.054 47.826 0.00 0.00 41.80 3.02
8527 8789 2.505407 CCCTCAATCCATGTGGTACAGA 59.495 50.000 0.00 0.00 41.80 3.41
8528 8790 2.421952 CCCCTCAATCCATGTGGTACAG 60.422 54.545 0.00 0.00 41.80 2.74
8529 8791 1.563879 CCCCTCAATCCATGTGGTACA 59.436 52.381 0.00 0.00 40.41 2.90
8530 8792 1.133792 CCCCCTCAATCCATGTGGTAC 60.134 57.143 0.00 0.00 40.41 3.34
8531 8793 1.221635 CCCCCTCAATCCATGTGGTA 58.778 55.000 0.00 0.00 40.41 3.25
8532 8794 0.552367 TCCCCCTCAATCCATGTGGT 60.552 55.000 0.00 0.00 40.41 4.16
8533 8795 0.855598 ATCCCCCTCAATCCATGTGG 59.144 55.000 0.00 0.00 41.46 4.17
8534 8796 2.091720 TGAATCCCCCTCAATCCATGTG 60.092 50.000 0.00 0.00 0.00 3.21
8535 8797 2.216881 TGAATCCCCCTCAATCCATGT 58.783 47.619 0.00 0.00 0.00 3.21
8536 8798 3.162666 CATGAATCCCCCTCAATCCATG 58.837 50.000 0.00 0.00 0.00 3.66
8537 8799 2.111255 CCATGAATCCCCCTCAATCCAT 59.889 50.000 0.00 0.00 0.00 3.41
8538 8800 1.500303 CCATGAATCCCCCTCAATCCA 59.500 52.381 0.00 0.00 0.00 3.41
8539 8801 1.203100 CCCATGAATCCCCCTCAATCC 60.203 57.143 0.00 0.00 0.00 3.01
8540 8802 1.203100 CCCCATGAATCCCCCTCAATC 60.203 57.143 0.00 0.00 0.00 2.67
8541 8803 0.862554 CCCCATGAATCCCCCTCAAT 59.137 55.000 0.00 0.00 0.00 2.57
8542 8804 0.254059 TCCCCATGAATCCCCCTCAA 60.254 55.000 0.00 0.00 0.00 3.02
8543 8805 0.027696 ATCCCCATGAATCCCCCTCA 60.028 55.000 0.00 0.00 0.00 3.86
8544 8806 0.701147 GATCCCCATGAATCCCCCTC 59.299 60.000 0.00 0.00 0.00 4.30
8545 8807 1.136329 CGATCCCCATGAATCCCCCT 61.136 60.000 0.00 0.00 0.00 4.79
8546 8808 1.380302 CGATCCCCATGAATCCCCC 59.620 63.158 0.00 0.00 0.00 5.40
8547 8809 1.133809 TCCGATCCCCATGAATCCCC 61.134 60.000 0.00 0.00 0.00 4.81
8548 8810 0.326264 CTCCGATCCCCATGAATCCC 59.674 60.000 0.00 0.00 0.00 3.85
8549 8811 1.277557 CTCTCCGATCCCCATGAATCC 59.722 57.143 0.00 0.00 0.00 3.01
8550 8812 1.277557 CCTCTCCGATCCCCATGAATC 59.722 57.143 0.00 0.00 0.00 2.52
8551 8813 1.132721 TCCTCTCCGATCCCCATGAAT 60.133 52.381 0.00 0.00 0.00 2.57
8552 8814 0.264657 TCCTCTCCGATCCCCATGAA 59.735 55.000 0.00 0.00 0.00 2.57
8553 8815 0.489117 ATCCTCTCCGATCCCCATGA 59.511 55.000 0.00 0.00 0.00 3.07
8554 8816 1.002888 CAATCCTCTCCGATCCCCATG 59.997 57.143 0.00 0.00 0.00 3.66
8555 8817 1.132721 TCAATCCTCTCCGATCCCCAT 60.133 52.381 0.00 0.00 0.00 4.00
8556 8818 0.264657 TCAATCCTCTCCGATCCCCA 59.735 55.000 0.00 0.00 0.00 4.96
8557 8819 1.650528 ATCAATCCTCTCCGATCCCC 58.349 55.000 0.00 0.00 0.00 4.81
8558 8820 4.399004 CATATCAATCCTCTCCGATCCC 57.601 50.000 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.