Multiple sequence alignment - TraesCS5A01G395900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G395900 chr5A 100.000 9660 0 0 1 9660 591011878 591021537 0.000000e+00 17839.0
1 TraesCS5A01G395900 chr6D 90.881 5801 388 61 2191 7941 11664244 11658535 0.000000e+00 7651.0
2 TraesCS5A01G395900 chr6D 90.862 4870 359 36 4817 9660 11744899 11749708 0.000000e+00 6449.0
3 TraesCS5A01G395900 chr6D 90.663 1885 119 22 2191 4067 11741941 11743776 0.000000e+00 2453.0
4 TraesCS5A01G395900 chr6D 92.235 1172 77 9 7980 9144 11658534 11657370 0.000000e+00 1648.0
5 TraesCS5A01G395900 chr6D 88.332 1277 80 27 969 2189 11740645 11741908 0.000000e+00 1469.0
6 TraesCS5A01G395900 chr6D 95.357 883 39 2 4305 5187 11726313 11727193 0.000000e+00 1402.0
7 TraesCS5A01G395900 chr6D 90.537 1025 60 10 483 1497 11728229 11729226 0.000000e+00 1321.0
8 TraesCS5A01G395900 chr6D 88.000 1000 69 16 969 1941 11665510 11664535 0.000000e+00 1134.0
9 TraesCS5A01G395900 chr6D 94.134 733 38 3 4062 4790 11744170 11744901 0.000000e+00 1110.0
10 TraesCS5A01G395900 chr6D 92.018 451 33 1 9140 9590 11647394 11646947 1.770000e-176 630.0
11 TraesCS5A01G395900 chr6D 86.192 449 30 14 3865 4308 11725859 11726280 3.180000e-124 457.0
12 TraesCS5A01G395900 chr6D 84.746 472 37 15 1 467 11724273 11724714 3.200000e-119 440.0
13 TraesCS5A01G395900 chr6D 89.783 323 19 9 634 946 11665822 11665504 1.510000e-107 401.0
14 TraesCS5A01G395900 chr6D 90.647 278 25 1 670 946 11740374 11740651 1.530000e-97 368.0
15 TraesCS5A01G395900 chr6D 79.794 485 70 11 1 464 11668271 11667794 2.600000e-85 327.0
16 TraesCS5A01G395900 chr6D 90.610 213 19 1 470 682 11666017 11665806 2.050000e-71 281.0
17 TraesCS5A01G395900 chr6D 89.080 174 19 0 1910 2083 11664512 11664339 5.870000e-52 217.0
18 TraesCS5A01G395900 chr6D 89.333 75 8 0 9586 9660 11638649 11638575 2.870000e-15 95.3
19 TraesCS5A01G395900 chr6A 91.871 4847 338 41 2191 7013 13010410 13015224 0.000000e+00 6717.0
20 TraesCS5A01G395900 chr6A 92.155 1963 134 9 7707 9660 13018098 13020049 0.000000e+00 2754.0
21 TraesCS5A01G395900 chr6A 90.456 922 51 9 969 1869 13009256 13010161 0.000000e+00 1181.0
22 TraesCS5A01G395900 chr6A 93.804 694 43 0 7009 7702 13017334 13018027 0.000000e+00 1044.0
23 TraesCS5A01G395900 chr6A 90.062 322 24 2 632 946 13008942 13009262 2.510000e-110 411.0
24 TraesCS5A01G395900 chr6A 83.047 407 37 13 466 842 13042851 13043255 3.340000e-89 340.0
25 TraesCS5A01G395900 chr6A 90.000 170 15 2 778 946 13043269 13043437 1.630000e-52 219.0
26 TraesCS5A01G395900 chr6A 93.846 65 4 0 559 623 13008402 13008466 2.220000e-16 99.0
27 TraesCS5A01G395900 chr6A 90.741 54 4 1 7735 7787 13018021 13018074 4.840000e-08 71.3
28 TraesCS5A01G395900 chr6B 93.268 3164 187 15 2191 5338 21375492 21378645 0.000000e+00 4639.0
29 TraesCS5A01G395900 chr6B 89.904 3229 274 28 6447 9660 21496584 21493393 0.000000e+00 4109.0
30 TraesCS5A01G395900 chr6B 89.250 3228 296 28 6447 9660 21580346 21577156 0.000000e+00 3991.0
31 TraesCS5A01G395900 chr6B 92.959 2244 136 12 7426 9660 21400701 21402931 0.000000e+00 3249.0
32 TraesCS5A01G395900 chr6B 86.387 2167 198 48 4308 6414 21582479 21580350 0.000000e+00 2278.0
33 TraesCS5A01G395900 chr6B 89.522 1193 95 14 5705 6887 21378657 21379829 0.000000e+00 1483.0
34 TraesCS5A01G395900 chr6B 89.692 1038 86 11 3285 4308 21583545 21582515 0.000000e+00 1304.0
35 TraesCS5A01G395900 chr6B 86.679 1081 113 21 5358 6414 21497661 21496588 0.000000e+00 1170.0
36 TraesCS5A01G395900 chr6B 88.328 891 63 13 969 1834 21373905 21374779 0.000000e+00 1031.0
37 TraesCS5A01G395900 chr6B 86.675 818 89 6 969 1779 21585229 21584425 0.000000e+00 889.0
38 TraesCS5A01G395900 chr6B 88.428 458 47 4 2331 2787 21584398 21583946 1.830000e-151 547.0
39 TraesCS5A01G395900 chr6B 84.016 488 47 20 465 946 21373449 21373911 3.200000e-119 440.0
40 TraesCS5A01G395900 chr6B 84.733 393 38 12 2826 3218 21583936 21583566 3.290000e-99 374.0
41 TraesCS5A01G395900 chr6B 92.469 239 16 2 6878 7116 21400466 21400702 3.340000e-89 340.0
42 TraesCS5A01G395900 chr6B 89.362 47 4 1 3530 3575 49553286 49553240 3.770000e-04 58.4
43 TraesCS5A01G395900 chr7B 78.591 369 59 13 3177 3542 561282752 561282401 9.760000e-55 226.0
44 TraesCS5A01G395900 chr4B 81.560 282 41 9 3264 3540 178377053 178376778 1.260000e-53 222.0
45 TraesCS5A01G395900 chr2D 75.740 169 25 9 225 391 480173321 480173167 4.840000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G395900 chr5A 591011878 591021537 9659 False 17839.000000 17839 100.000000 1 9660 1 chr5A.!!$F1 9659
1 TraesCS5A01G395900 chr6D 11740374 11749708 9334 False 2369.800000 6449 90.927600 670 9660 5 chr6D.!!$F2 8990
2 TraesCS5A01G395900 chr6D 11657370 11668271 10901 True 1665.571429 7651 88.626143 1 9144 7 chr6D.!!$R3 9143
3 TraesCS5A01G395900 chr6D 11724273 11729226 4953 False 905.000000 1402 89.208000 1 5187 4 chr6D.!!$F1 5186
4 TraesCS5A01G395900 chr6A 13008402 13020049 11647 False 1753.900000 6717 91.847857 559 9660 7 chr6A.!!$F1 9101
5 TraesCS5A01G395900 chr6A 13042851 13043437 586 False 279.500000 340 86.523500 466 946 2 chr6A.!!$F2 480
6 TraesCS5A01G395900 chr6B 21493393 21497661 4268 True 2639.500000 4109 88.291500 5358 9660 2 chr6B.!!$R2 4302
7 TraesCS5A01G395900 chr6B 21373449 21379829 6380 False 1898.250000 4639 88.783500 465 6887 4 chr6B.!!$F1 6422
8 TraesCS5A01G395900 chr6B 21400466 21402931 2465 False 1794.500000 3249 92.714000 6878 9660 2 chr6B.!!$F2 2782
9 TraesCS5A01G395900 chr6B 21577156 21585229 8073 True 1563.833333 3991 87.527500 969 9660 6 chr6B.!!$R3 8691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 2288 0.179004 ACGCAAGGGACCATTCACAA 60.179 50.000 0.00 0.00 46.39 3.33 F
560 2380 1.004200 GGGGGTACACGTGTTGAGG 60.004 63.158 28.55 0.00 0.00 3.86 F
1104 3543 1.065418 GTGGAGGATGACCCAAACGAT 60.065 52.381 0.00 0.00 37.41 3.73 F
2189 5048 0.591236 GCGTGCGTTTTTGAGCTGAA 60.591 50.000 0.00 0.00 0.00 3.02 F
3575 6476 0.550914 AGTCTGGGAGCCAAAACACA 59.449 50.000 0.00 0.00 30.80 3.72 F
4373 7720 1.000771 GCCAGGAACTCCCCTTTCC 60.001 63.158 0.00 0.00 42.68 3.13 F
5063 8413 0.295763 CGATCACATTGTCGTCGCTG 59.704 55.000 7.23 0.00 33.42 5.18 F
6121 10485 0.034186 GTTCCCTGCACATGGATCCA 60.034 55.000 18.88 18.88 0.00 3.41 F
7250 13744 0.034059 CAGAACTCTGTTGCGTCCCT 59.966 55.000 0.00 0.00 39.09 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1325 3767 0.248336 GCACGACGGTCACGATGATA 60.248 55.000 9.10 0.00 44.60 2.15 R
1964 4618 1.003355 TAGAAGCCTGTGCACAGCC 60.003 57.895 36.38 28.71 42.47 4.85 R
2828 5722 0.517316 CAGCAAGCGGTGGTTTAGTC 59.483 55.000 0.00 0.00 35.13 2.59 R
3987 6895 0.031994 ACACATTTCGGCAAAGGCAC 59.968 50.000 0.00 0.00 43.71 5.01 R
4712 8061 0.179056 ACCACTTGCAGCTAACACGT 60.179 50.000 0.00 0.00 0.00 4.49 R
5764 10119 0.033920 AGAGTTGATGCAGCGACACA 59.966 50.000 23.66 0.00 0.00 3.72 R
6134 10498 0.250295 CGTCAGGGAGTTTTGCAGGA 60.250 55.000 0.00 0.00 0.00 3.86 R
7920 14485 0.034756 TGTTGATGGTGAGTGTCGGG 59.965 55.000 0.00 0.00 0.00 5.14 R
8756 15332 0.035881 CAGAAGCTTGCCCTGAGTGA 59.964 55.000 2.10 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 3.322514 CGGAAGCTCCCAGTTTTGA 57.677 52.632 0.00 0.00 31.13 2.69
58 59 7.687445 CAGTTTTGAAAATCTTTCCAAACTGG 58.313 34.615 29.31 19.77 46.81 4.00
144 150 8.292444 TGGATACTTTTCCAAAATCGATGAAT 57.708 30.769 0.00 0.00 42.82 2.57
182 230 7.379529 CGTGAACTTTTGCAAAATCTATGAACT 59.620 33.333 24.06 4.04 0.00 3.01
183 231 9.034544 GTGAACTTTTGCAAAATCTATGAACTT 57.965 29.630 24.06 4.04 0.00 2.66
184 232 9.598517 TGAACTTTTGCAAAATCTATGAACTTT 57.401 25.926 24.06 3.72 0.00 2.66
188 236 9.868389 CTTTTGCAAAATCTATGAACTTTTTCC 57.132 29.630 24.06 0.00 0.00 3.13
189 237 7.961325 TTGCAAAATCTATGAACTTTTTCCC 57.039 32.000 0.00 0.00 0.00 3.97
190 238 7.301868 TGCAAAATCTATGAACTTTTTCCCT 57.698 32.000 0.00 0.00 0.00 4.20
191 239 8.415950 TGCAAAATCTATGAACTTTTTCCCTA 57.584 30.769 0.00 0.00 0.00 3.53
192 240 8.303876 TGCAAAATCTATGAACTTTTTCCCTAC 58.696 33.333 0.00 0.00 0.00 3.18
193 241 8.303876 GCAAAATCTATGAACTTTTTCCCTACA 58.696 33.333 0.00 0.00 0.00 2.74
201 249 8.877864 ATGAACTTTTTCCCTACAATATGTGA 57.122 30.769 0.00 0.00 0.00 3.58
202 250 8.698973 TGAACTTTTTCCCTACAATATGTGAA 57.301 30.769 0.00 0.00 0.00 3.18
203 251 8.573035 TGAACTTTTTCCCTACAATATGTGAAC 58.427 33.333 0.00 0.00 0.00 3.18
216 264 8.568732 ACAATATGTGAACGTTTTTCGAATTT 57.431 26.923 0.46 0.00 42.86 1.82
217 265 8.687301 ACAATATGTGAACGTTTTTCGAATTTC 58.313 29.630 0.46 0.00 42.86 2.17
218 266 8.686418 CAATATGTGAACGTTTTTCGAATTTCA 58.314 29.630 0.46 0.96 42.86 2.69
348 397 4.869861 ACAAAGGTCAAAACAATTGTCTGC 59.130 37.500 12.39 8.53 33.16 4.26
362 411 1.209261 TGTCTGCTCAACAACTGACCA 59.791 47.619 0.00 0.00 34.81 4.02
386 435 3.924507 GGCTGCCGATCAACCATT 58.075 55.556 1.35 0.00 31.22 3.16
393 442 1.382522 CCGATCAACCATTGACCTGG 58.617 55.000 0.00 0.00 43.48 4.45
400 449 1.371467 ACCATTGACCTGGGTGATCA 58.629 50.000 0.00 0.00 40.85 2.92
406 455 5.599656 CCATTGACCTGGGTGATCAAATAAT 59.400 40.000 0.00 0.00 36.03 1.28
407 456 6.777091 CCATTGACCTGGGTGATCAAATAATA 59.223 38.462 0.00 0.00 36.03 0.98
411 460 6.018433 ACCTGGGTGATCAAATAATAAGCT 57.982 37.500 0.00 0.00 0.00 3.74
414 463 6.147821 CCTGGGTGATCAAATAATAAGCTACG 59.852 42.308 0.00 0.00 0.00 3.51
453 502 2.603110 GACAAGATATTCAAGCGACGCA 59.397 45.455 23.70 0.35 0.00 5.24
468 2288 0.179004 ACGCAAGGGACCATTCACAA 60.179 50.000 0.00 0.00 46.39 3.33
520 2340 3.856206 AGATAAAGGTTAAGGCAAGGGGA 59.144 43.478 0.00 0.00 0.00 4.81
529 2349 1.075659 GGCAAGGGGAAGTGCTTCT 59.924 57.895 11.18 0.00 40.70 2.85
531 2351 1.301677 GCAAGGGGAAGTGCTTCTCG 61.302 60.000 11.18 0.00 40.91 4.04
534 2354 1.122019 AGGGGAAGTGCTTCTCGTGT 61.122 55.000 11.18 0.00 40.91 4.49
539 2359 2.031163 GTGCTTCTCGTGTGGCCT 59.969 61.111 3.32 0.00 0.00 5.19
540 2360 2.031012 TGCTTCTCGTGTGGCCTG 59.969 61.111 3.32 0.00 0.00 4.85
560 2380 1.004200 GGGGGTACACGTGTTGAGG 60.004 63.158 28.55 0.00 0.00 3.86
573 2393 1.303398 TTGAGGAGTCGAGGCGTCT 60.303 57.895 4.69 0.00 0.00 4.18
779 3136 9.204337 TGGAAAGGCTACTTGTACTAATACATA 57.796 33.333 0.00 0.00 41.02 2.29
843 3278 5.355071 TGGCAAATCTTAGTGCATTACTCTG 59.645 40.000 0.00 0.00 42.74 3.35
939 3376 5.126222 CACTCTCTTTCTATCACCAGCAGTA 59.874 44.000 0.00 0.00 0.00 2.74
940 3377 5.126384 ACTCTCTTTCTATCACCAGCAGTAC 59.874 44.000 0.00 0.00 0.00 2.73
941 3378 4.402793 TCTCTTTCTATCACCAGCAGTACC 59.597 45.833 0.00 0.00 0.00 3.34
942 3379 4.353777 TCTTTCTATCACCAGCAGTACCT 58.646 43.478 0.00 0.00 0.00 3.08
943 3380 4.777896 TCTTTCTATCACCAGCAGTACCTT 59.222 41.667 0.00 0.00 0.00 3.50
944 3381 4.737855 TTCTATCACCAGCAGTACCTTC 57.262 45.455 0.00 0.00 0.00 3.46
945 3382 3.982516 TCTATCACCAGCAGTACCTTCT 58.017 45.455 0.00 0.00 0.00 2.85
946 3383 4.353777 TCTATCACCAGCAGTACCTTCTT 58.646 43.478 0.00 0.00 0.00 2.52
947 3384 4.777896 TCTATCACCAGCAGTACCTTCTTT 59.222 41.667 0.00 0.00 0.00 2.52
948 3385 3.857157 TCACCAGCAGTACCTTCTTTT 57.143 42.857 0.00 0.00 0.00 2.27
949 3386 4.164843 TCACCAGCAGTACCTTCTTTTT 57.835 40.909 0.00 0.00 0.00 1.94
1098 3537 2.290287 CGTGGTGGAGGATGACCCA 61.290 63.158 0.00 0.00 37.41 4.51
1104 3543 1.065418 GTGGAGGATGACCCAAACGAT 60.065 52.381 0.00 0.00 37.41 3.73
1173 3612 1.267121 GGGCGGCCATCTTAGATCTA 58.733 55.000 25.33 0.00 0.00 1.98
1177 3616 2.094442 GCGGCCATCTTAGATCTACTCC 60.094 54.545 2.24 0.00 0.00 3.85
1201 3640 3.405831 TCAGTTTTGCATGTCTCCTCTG 58.594 45.455 0.00 0.00 0.00 3.35
1205 3644 1.571955 TTGCATGTCTCCTCTGCCTA 58.428 50.000 0.00 0.00 35.02 3.93
1221 3660 3.801698 TGCCTATTCTTGTGAGATCTGC 58.198 45.455 0.00 0.00 0.00 4.26
1288 3730 1.812922 CGCCAAGAGAAGCGCTGAT 60.813 57.895 12.58 1.25 46.50 2.90
1304 3746 3.034635 GCTGATAGAGGTGGAGGAGAAA 58.965 50.000 0.00 0.00 0.00 2.52
1308 3750 2.723530 AGAGGTGGAGGAGAAAGGAA 57.276 50.000 0.00 0.00 0.00 3.36
1325 3767 2.115343 GAAAGGGCTTCCACTTCGAT 57.885 50.000 0.00 0.00 0.00 3.59
1432 3877 4.142160 CCCAGTCATCAGTGAGTATTCGAA 60.142 45.833 0.00 0.00 35.84 3.71
1437 3882 6.533012 AGTCATCAGTGAGTATTCGAAATGTG 59.467 38.462 0.00 0.00 36.26 3.21
1438 3883 6.531594 GTCATCAGTGAGTATTCGAAATGTGA 59.468 38.462 0.00 0.00 34.36 3.58
1439 3884 7.223582 GTCATCAGTGAGTATTCGAAATGTGAT 59.776 37.037 0.00 1.68 34.36 3.06
1440 3885 7.436376 TCATCAGTGAGTATTCGAAATGTGATC 59.564 37.037 0.00 0.00 0.00 2.92
1441 3886 5.743872 TCAGTGAGTATTCGAAATGTGATCG 59.256 40.000 0.00 0.00 41.53 3.69
1442 3887 4.504461 AGTGAGTATTCGAAATGTGATCGC 59.496 41.667 0.00 0.00 40.04 4.58
1443 3888 4.267690 GTGAGTATTCGAAATGTGATCGCA 59.732 41.667 12.12 12.12 40.04 5.10
1529 3974 5.519722 CATGTGTTTGTGTAGTTTTCTCCC 58.480 41.667 0.00 0.00 0.00 4.30
1531 3976 3.002965 GTGTTTGTGTAGTTTTCTCCCCG 59.997 47.826 0.00 0.00 0.00 5.73
1664 4112 3.107601 CAGAGGGGATTAGAAGTGGACA 58.892 50.000 0.00 0.00 0.00 4.02
1711 4180 7.011109 GGTGCGTCACATATGTTTCTAACTATT 59.989 37.037 5.37 0.00 35.86 1.73
1769 4238 3.851098 ACGTGATCCTTTTCTACTCTGC 58.149 45.455 0.00 0.00 0.00 4.26
1861 4397 2.388232 GGTAGGTTTGCGAGTGCCG 61.388 63.158 0.00 0.00 41.78 5.69
1964 4618 2.738521 CTGGCGTCCGTTGTCCTG 60.739 66.667 0.00 0.00 0.00 3.86
1985 4639 1.357258 CTGTGCACAGGCTTCTAGCG 61.357 60.000 34.65 9.83 43.62 4.26
2012 4666 4.884164 GGCCAAAAGTATGTCTAGCAAGAT 59.116 41.667 0.00 0.00 33.30 2.40
2031 4686 6.818142 GCAAGATTATGTGCCTTAAAATTGGT 59.182 34.615 0.00 0.00 34.58 3.67
2189 5048 0.591236 GCGTGCGTTTTTGAGCTGAA 60.591 50.000 0.00 0.00 0.00 3.02
2238 5128 0.827368 GAGCCCGAAACCTCTCTCAT 59.173 55.000 0.00 0.00 0.00 2.90
2310 5201 1.676006 CGGGGTATTCTTTGCATGGAC 59.324 52.381 0.00 0.00 0.00 4.02
2455 5347 4.729868 AGCTTGGCCTAATTAATGTAGGG 58.270 43.478 3.32 8.12 38.90 3.53
2474 5366 2.583143 GGCATTAAACTAGCCCCGATT 58.417 47.619 0.00 0.00 42.58 3.34
2477 5369 3.003378 GCATTAAACTAGCCCCGATTGAC 59.997 47.826 0.00 0.00 0.00 3.18
2505 5398 6.840705 AGTATAATCAAGGTGCCATTCCAATT 59.159 34.615 0.00 0.00 0.00 2.32
2545 5438 1.442184 CGTTGACCGTCTCGACAGG 60.442 63.158 9.81 2.75 33.16 4.00
2558 5451 3.899981 GACAGGTCGCCACATGCCA 62.900 63.158 0.00 0.00 37.87 4.92
2559 5452 2.438975 CAGGTCGCCACATGCCAT 60.439 61.111 0.00 0.00 36.24 4.40
2591 5485 3.521937 CCTTATGTGAAGTGACCCCCTTA 59.478 47.826 0.00 0.00 0.00 2.69
2689 5583 5.304686 TCACCTACCAAATCTCACTTGTT 57.695 39.130 0.00 0.00 0.00 2.83
2721 5615 5.721000 CCTCTTCCATCTCTAGGCTATCATT 59.279 44.000 0.00 0.00 0.00 2.57
2733 5627 1.139058 GCTATCATTCCACCACCGTCT 59.861 52.381 0.00 0.00 0.00 4.18
2828 5722 2.676121 TGCCCATTGCTGGAACCG 60.676 61.111 0.00 0.00 46.37 4.44
2849 5743 1.271379 ACTAAACCACCGCTTGCTGAT 60.271 47.619 0.00 0.00 0.00 2.90
2852 5746 0.823356 AACCACCGCTTGCTGATTGT 60.823 50.000 0.00 0.00 0.00 2.71
2858 5752 2.767536 GCTTGCTGATTGTAGGCGA 58.232 52.632 0.00 0.00 0.00 5.54
2870 5764 2.100197 TGTAGGCGAGCTACACATTCT 58.900 47.619 0.00 0.00 32.98 2.40
2968 5863 9.454859 AGGACTAATTTTCCTATTCAAGTCTTG 57.545 33.333 6.21 6.21 42.06 3.02
2970 5865 9.232473 GACTAATTTTCCTATTCAAGTCTTGGT 57.768 33.333 12.66 4.91 31.59 3.67
3010 5905 1.535462 CATGACCCCACGAACAACTTC 59.465 52.381 0.00 0.00 0.00 3.01
3029 5924 7.281100 ACAACTTCTCTAGTTTTTGTCCTCTTG 59.719 37.037 0.00 0.00 44.73 3.02
3071 5966 2.100252 TCTAGGCGTTTACCGAATCCAG 59.900 50.000 0.00 0.00 39.56 3.86
3111 6006 5.670485 AGGACAATCGTACTATGAAATGCA 58.330 37.500 0.00 0.00 33.07 3.96
3218 6113 1.180029 GCTCATTTGCACCTGGTGAT 58.820 50.000 30.23 12.16 35.23 3.06
3297 6196 6.825721 GGAAGATATTGGAATGAGTGAAGTGT 59.174 38.462 0.00 0.00 0.00 3.55
3301 6200 3.558931 TGGAATGAGTGAAGTGTGTGT 57.441 42.857 0.00 0.00 0.00 3.72
3415 6314 2.403259 CCGAAATTTGTCCTTGTTGCC 58.597 47.619 0.00 0.00 0.00 4.52
3491 6390 6.314896 CACCTAGGCATCTTTCTCTACAAAAG 59.685 42.308 9.30 0.00 35.49 2.27
3498 6397 7.120432 GGCATCTTTCTCTACAAAAGAATCTGT 59.880 37.037 2.75 0.00 43.76 3.41
3575 6476 0.550914 AGTCTGGGAGCCAAAACACA 59.449 50.000 0.00 0.00 30.80 3.72
3777 6684 9.905713 ATCCACTTTGAAGCATTTTCTATACTA 57.094 29.630 0.00 0.00 0.00 1.82
3783 6690 8.942338 TTGAAGCATTTTCTATACTATGTCGT 57.058 30.769 0.00 0.00 0.00 4.34
3785 6692 8.817100 TGAAGCATTTTCTATACTATGTCGTTG 58.183 33.333 0.00 0.00 0.00 4.10
3859 6766 6.367374 TCTATCGGGCAAAATATATGTCCA 57.633 37.500 11.41 1.51 42.84 4.02
3884 6791 2.748461 TTCGCTTCGTTTTCAACTGG 57.252 45.000 0.00 0.00 0.00 4.00
3901 6808 1.448717 GGAACTTCCGAGCTGCTCC 60.449 63.158 22.97 7.59 0.00 4.70
3983 6891 7.737869 TGGTTTTACATGGTACTTTCTGAGTA 58.262 34.615 0.00 0.00 39.86 2.59
3987 6895 8.827177 TTTACATGGTACTTTCTGAGTAGTTG 57.173 34.615 0.00 0.00 41.41 3.16
4043 6952 9.442047 AGTTGAAACCTCTACTTATTCATTCAG 57.558 33.333 0.00 0.00 34.48 3.02
4059 6969 4.832823 TCATTCAGTGGTACTTCTGAGTGA 59.167 41.667 25.36 25.36 45.12 3.41
4141 7449 5.481105 TGGTTGTTCCATAAACTACTACCG 58.519 41.667 0.00 0.00 41.52 4.02
4268 7579 5.071788 ACCCTTAGTCATTTCACTCACTCAA 59.928 40.000 0.00 0.00 0.00 3.02
4276 7587 5.248248 TCATTTCACTCACTCAATCCACCTA 59.752 40.000 0.00 0.00 0.00 3.08
4282 7593 5.939883 CACTCACTCAATCCACCTATTCAAA 59.060 40.000 0.00 0.00 0.00 2.69
4283 7594 6.600822 CACTCACTCAATCCACCTATTCAAAT 59.399 38.462 0.00 0.00 0.00 2.32
4287 7598 5.888161 ACTCAATCCACCTATTCAAATCACC 59.112 40.000 0.00 0.00 0.00 4.02
4342 7689 3.636764 GGTGGTTCCATGTTCACTTCTTT 59.363 43.478 0.00 0.00 35.97 2.52
4373 7720 1.000771 GCCAGGAACTCCCCTTTCC 60.001 63.158 0.00 0.00 42.68 3.13
4446 7793 4.104738 TGAGAGTGACCCCTTTGATTCTTT 59.895 41.667 0.00 0.00 0.00 2.52
4519 7867 4.968259 TCTTTGCTTGTTACTCTTGGCTA 58.032 39.130 0.00 0.00 0.00 3.93
4607 7955 8.495361 TTGTTAAGTACTTAAGCTTGTGTTGA 57.505 30.769 24.97 0.25 35.90 3.18
4712 8061 2.156098 GACCTTAATCCAAACACCGCA 58.844 47.619 0.00 0.00 0.00 5.69
4732 8081 0.944386 CGTGTTAGCTGCAAGTGGTT 59.056 50.000 1.02 0.00 35.30 3.67
4809 8159 1.024579 CGGTGACCGGGGATTTTCAG 61.025 60.000 17.80 0.00 44.15 3.02
4823 8173 1.055849 TTTCAGCCCTCTAGCACACA 58.944 50.000 0.00 0.00 34.23 3.72
4874 8224 2.503331 TGATGTCGTGTTCATGGCTTT 58.497 42.857 0.00 0.00 0.00 3.51
4880 8230 6.751514 TGTCGTGTTCATGGCTTTTTATAT 57.248 33.333 0.00 0.00 0.00 0.86
5063 8413 0.295763 CGATCACATTGTCGTCGCTG 59.704 55.000 7.23 0.00 33.42 5.18
5195 8562 4.812091 GGTTGTGTGTATGTGTCACTACAA 59.188 41.667 13.46 8.57 38.68 2.41
5200 8567 7.438564 TGTGTGTATGTGTCACTACAAGTATT 58.561 34.615 13.46 0.00 37.36 1.89
5242 8610 4.757149 GGAGCTCTTTCTGTCAGCTTTTTA 59.243 41.667 14.64 0.00 43.72 1.52
5254 8622 1.004277 AGCTTTTTATCGGGGCTGACA 59.996 47.619 0.00 0.00 31.68 3.58
5277 9568 5.853282 CAGCAAAATAGAGAAAAAGTGACGG 59.147 40.000 0.00 0.00 0.00 4.79
5281 9572 6.385649 AAATAGAGAAAAAGTGACGGCAAA 57.614 33.333 0.00 0.00 0.00 3.68
5285 9576 5.281727 AGAGAAAAAGTGACGGCAAATTTC 58.718 37.500 13.86 13.86 0.00 2.17
5289 9580 7.433680 AGAAAAAGTGACGGCAAATTTCTAAT 58.566 30.769 19.84 3.35 33.94 1.73
5292 9583 5.296813 AGTGACGGCAAATTTCTAATGTC 57.703 39.130 0.00 0.00 0.00 3.06
5342 9652 1.824329 TTTGACGGGCGGCAAAGAA 60.824 52.632 12.47 0.00 46.88 2.52
5392 9703 2.034558 GCAGCAAAGACAAACTTAGCCA 59.965 45.455 0.00 0.00 37.93 4.75
5440 9752 4.642429 AGATAGACTTTGCCGTCAGTTTT 58.358 39.130 0.00 0.00 36.38 2.43
5483 9796 2.504899 CATCCCGCGGATCGATCG 60.505 66.667 30.73 9.36 40.98 3.69
5540 9853 1.959226 CGCACGTACTTGCCCAACT 60.959 57.895 17.70 0.00 39.53 3.16
5667 10022 2.121564 CTGAACTGTTGCCGCACCTG 62.122 60.000 0.00 0.00 0.00 4.00
5703 10058 2.345244 CGCACCACCTCTTGCTCT 59.655 61.111 0.00 0.00 36.54 4.09
5710 10065 1.845205 ACCTCTTGCTCTGCCCTGT 60.845 57.895 0.00 0.00 0.00 4.00
5732 10087 3.252284 CCACACCACCTCCTGCCT 61.252 66.667 0.00 0.00 0.00 4.75
5748 10103 1.302431 CCTCCATGTTGCACCGTCA 60.302 57.895 0.00 0.00 0.00 4.35
5763 10118 1.826340 CGTCACACCACCTCCATCCA 61.826 60.000 0.00 0.00 0.00 3.41
5764 10119 0.620556 GTCACACCACCTCCATCCAT 59.379 55.000 0.00 0.00 0.00 3.41
5776 10131 1.099295 CCATCCATGTGTCGCTGCAT 61.099 55.000 0.00 0.00 0.00 3.96
5872 10227 1.838073 GCCCTTTCCTGACCCGAGAA 61.838 60.000 0.00 0.00 0.00 2.87
5887 10242 0.035915 GAGAAAGCCGCCTTCTCCTT 60.036 55.000 17.67 0.00 0.00 3.36
5998 10353 1.566211 CTGGCTCTTCCTCTCTCCAA 58.434 55.000 0.00 0.00 35.26 3.53
6029 10392 3.117926 TCTCTCCCAGATCTCTGTCTCTG 60.118 52.174 6.46 0.00 42.27 3.35
6121 10485 0.034186 GTTCCCTGCACATGGATCCA 60.034 55.000 18.88 18.88 0.00 3.41
6134 10498 0.037303 GGATCCATCCGACCATGCAT 59.963 55.000 6.95 0.00 37.19 3.96
6169 10533 4.016706 CGACAAGACCCGGGGCTT 62.017 66.667 37.31 37.31 0.00 4.35
6191 10559 2.879756 GCCCACTTGCACCTTGAATCTA 60.880 50.000 0.00 0.00 0.00 1.98
6198 10566 2.906389 TGCACCTTGAATCTACACCTCT 59.094 45.455 0.00 0.00 0.00 3.69
6250 10618 1.151450 CCCGCCTCCTTGCCATATT 59.849 57.895 0.00 0.00 0.00 1.28
6259 10627 1.826720 CCTTGCCATATTTGTGCCACT 59.173 47.619 0.00 0.00 0.00 4.00
6415 10785 2.027837 ACAGCAAAGATGGATTTTGGCC 60.028 45.455 0.00 0.00 36.33 5.36
6545 10916 5.334491 GGCAAAGTAGCTCTTTTCTGACTTC 60.334 44.000 8.01 0.00 42.95 3.01
6546 10917 5.237344 GCAAAGTAGCTCTTTTCTGACTTCA 59.763 40.000 8.01 0.00 42.95 3.02
6547 10918 6.072783 GCAAAGTAGCTCTTTTCTGACTTCAT 60.073 38.462 8.01 0.00 42.95 2.57
6609 10983 6.364435 GCAGACAACAAATTTCTTGATTCCTC 59.636 38.462 12.44 0.59 0.00 3.71
6620 10994 5.392767 TCTTGATTCCTCTAGTGTGTGTC 57.607 43.478 0.00 0.00 0.00 3.67
6626 11000 5.607939 TTCCTCTAGTGTGTGTCTTCAAA 57.392 39.130 0.00 0.00 0.00 2.69
6647 11021 7.838884 TCAAATTCTTGGATGCATATTTGTGA 58.161 30.769 21.27 8.29 35.54 3.58
6652 11026 4.816786 TGGATGCATATTTGTGATGTCG 57.183 40.909 0.00 0.00 0.00 4.35
6762 11140 7.573627 AGAAAATAGTTTACAAAGCTCACGAC 58.426 34.615 0.00 0.00 0.00 4.34
6804 11182 6.345096 TCATTGGGTTCTCCTTGAAAAATC 57.655 37.500 0.00 0.00 36.30 2.17
6836 11216 2.760650 TCTAGCAAATTCTCCTCGCTCA 59.239 45.455 0.00 0.00 34.18 4.26
6919 11299 3.879295 CACACTTATGCTAGATGTTGGGG 59.121 47.826 0.00 0.00 0.00 4.96
7071 13565 0.183492 GGATGCTCCCATGCCTAACA 59.817 55.000 0.00 0.00 34.09 2.41
7080 13574 1.406751 CCATGCCTAACACATCGACCA 60.407 52.381 0.00 0.00 0.00 4.02
7092 13586 9.181805 CTAACACATCGACCATTATGTACTTAG 57.818 37.037 0.00 0.00 34.61 2.18
7108 13602 7.771927 TGTACTTAGTTAGGTTGTAGAGCTT 57.228 36.000 0.00 0.00 37.30 3.74
7111 13605 7.167924 ACTTAGTTAGGTTGTAGAGCTTACC 57.832 40.000 0.00 0.00 36.37 2.85
7213 13707 7.783042 TCTTAGCATTAGAGTAGTTCCTTTCC 58.217 38.462 0.00 0.00 0.00 3.13
7228 13722 4.739793 TCCTTTCCAATCCTTCACAATGT 58.260 39.130 0.00 0.00 0.00 2.71
7231 13725 5.452078 TTTCCAATCCTTCACAATGTGTC 57.548 39.130 13.55 0.00 34.79 3.67
7250 13744 0.034059 CAGAACTCTGTTGCGTCCCT 59.966 55.000 0.00 0.00 39.09 4.20
7281 13775 2.366916 CAAGTCCACTGTCAAGTCCTCT 59.633 50.000 0.00 0.00 32.98 3.69
7298 13792 2.200067 CTCTGATAGCAGCAACCTTCG 58.800 52.381 2.24 0.00 42.01 3.79
7312 13806 1.909302 ACCTTCGGATTGTCCATGTCT 59.091 47.619 0.00 0.00 35.91 3.41
7313 13807 2.305927 ACCTTCGGATTGTCCATGTCTT 59.694 45.455 0.00 0.00 35.91 3.01
7386 13880 3.007182 CCATTCAAACTCAACTTGGCCAT 59.993 43.478 6.09 0.00 0.00 4.40
7502 13996 0.109597 CATCAAGTGGCGCAAGGAAC 60.110 55.000 10.83 0.00 38.28 3.62
7654 14148 1.585267 GCACGATCCACATTGGCACA 61.585 55.000 0.00 0.00 37.47 4.57
7674 14168 5.164061 GCACAAATTTCTAGGCAACATTTCG 60.164 40.000 0.00 0.00 41.41 3.46
7705 14265 2.139323 TCATCGCCACCTACTACTGT 57.861 50.000 0.00 0.00 0.00 3.55
7810 14371 3.096852 CCTCGGCCACATATATCAGGTA 58.903 50.000 2.24 0.00 0.00 3.08
7863 14427 1.517832 CCCCTTCGTCTAGGCACAG 59.482 63.158 0.00 0.00 33.73 3.66
7868 14432 2.093973 CCTTCGTCTAGGCACAGTCATT 60.094 50.000 0.00 0.00 0.00 2.57
7968 14533 3.111536 CCAAAAAGTGGCGATGCAG 57.888 52.632 0.00 0.00 41.72 4.41
7988 14553 0.246635 TCGCCAACTTCTAGGAGCAC 59.753 55.000 0.00 0.00 0.00 4.40
8014 14579 5.123820 GCAGCAGGTAACAAGACAATGAATA 59.876 40.000 0.00 0.00 41.41 1.75
8043 14608 6.601217 TCCATAAATGACCATTTGAATCACGA 59.399 34.615 15.90 0.00 40.83 4.35
8057 14622 1.275666 TCACGATTGTCCCAGTGGAT 58.724 50.000 11.95 0.00 44.28 3.41
8093 14658 3.813443 AGGCGCATCAGAAGTCATAAAT 58.187 40.909 10.83 0.00 0.00 1.40
8123 14688 0.903924 CAACCACATGGGCCATGGAA 60.904 55.000 41.04 7.27 45.16 3.53
8147 14713 3.785887 ACATGGCATCCCTAGTTTCCTTA 59.214 43.478 0.00 0.00 0.00 2.69
8151 14717 3.712218 GGCATCCCTAGTTTCCTTAGTCT 59.288 47.826 0.00 0.00 0.00 3.24
8190 14756 0.035739 TGGCGACCTTCCCACTAAAC 59.964 55.000 0.00 0.00 0.00 2.01
8201 14767 3.015516 CACTAAACCCAGTGGCGTT 57.984 52.632 2.61 6.93 41.88 4.84
8216 14782 1.951510 CGTTGTGCTTGGATGCTGT 59.048 52.632 0.00 0.00 0.00 4.40
8327 14897 3.191162 GCATGCTACATGGTGAAAACTCA 59.809 43.478 11.37 0.00 0.00 3.41
8362 14932 1.414181 CACTAGCCCAACTCCATCGAT 59.586 52.381 0.00 0.00 0.00 3.59
8367 14937 2.092212 AGCCCAACTCCATCGATGATTT 60.092 45.455 26.86 12.82 0.00 2.17
8395 14965 2.492090 CACGAAGCCTCCTCGGAG 59.508 66.667 5.97 5.97 41.63 4.63
8399 14969 1.319541 CGAAGCCTCCTCGGAGATTA 58.680 55.000 14.45 0.00 44.53 1.75
8505 15081 7.988028 ACTATTGGCTACTCTTGTTATTCCTTC 59.012 37.037 0.00 0.00 0.00 3.46
8506 15082 5.755409 TGGCTACTCTTGTTATTCCTTCA 57.245 39.130 0.00 0.00 0.00 3.02
8511 15087 7.011857 GGCTACTCTTGTTATTCCTTCAATCTG 59.988 40.741 0.00 0.00 0.00 2.90
8618 15194 9.408648 GAATTTGATCCCTATGGTTTCTCTTTA 57.591 33.333 0.00 0.00 0.00 1.85
8624 15200 6.958767 TCCCTATGGTTTCTCTTTAAAGGAG 58.041 40.000 15.13 10.89 0.00 3.69
8676 15252 3.510531 ATAGCTCGGGAGACATCTACA 57.489 47.619 0.00 0.00 33.60 2.74
8686 15262 3.368531 GGAGACATCTACAACTTCCGCTT 60.369 47.826 0.00 0.00 0.00 4.68
8756 15332 3.584848 ACCTCTGGCATTGAAGTCTTAGT 59.415 43.478 0.00 0.00 0.00 2.24
8762 15338 4.040339 TGGCATTGAAGTCTTAGTCACTCA 59.960 41.667 0.00 0.00 0.00 3.41
8960 15543 8.862325 AAATTTTCCCATTGTATTTTCCCTTC 57.138 30.769 0.00 0.00 0.00 3.46
9001 15584 7.708322 TCATTATTCTTGATGAGTACTCACAGC 59.292 37.037 27.41 18.91 43.11 4.40
9002 15585 3.494045 TCTTGATGAGTACTCACAGCG 57.506 47.619 27.41 18.61 43.11 5.18
9005 15588 4.457949 TCTTGATGAGTACTCACAGCGTTA 59.542 41.667 27.41 5.78 43.11 3.18
9036 15619 8.594550 ACTAGTCCATTACACAACAAGTCTATT 58.405 33.333 0.00 0.00 0.00 1.73
9056 15639 2.120312 TGCCGATATTACCCTCCAACA 58.880 47.619 0.00 0.00 0.00 3.33
9162 15746 6.183360 CCACAAGCTACAACTATTTTCTCTCG 60.183 42.308 0.00 0.00 0.00 4.04
9168 15752 8.688151 AGCTACAACTATTTTCTCTCGATAGTT 58.312 33.333 0.00 0.00 43.63 2.24
9250 15834 4.646492 CCATATGGCCTTAAGAAAGCACTT 59.354 41.667 9.29 0.00 0.00 3.16
9271 15855 0.676782 GTGCCTGGTCTATGCGGTTT 60.677 55.000 0.00 0.00 0.00 3.27
9282 15866 2.550487 TGCGGTTTAGCACACATCC 58.450 52.632 0.00 0.00 42.92 3.51
9308 15892 1.156736 CCTAGGCTTTGTTGTGTCCG 58.843 55.000 0.00 0.00 0.00 4.79
9322 15906 0.690192 TGTCCGAATTTGGCTCCTCA 59.310 50.000 6.88 0.00 0.00 3.86
9341 15925 7.336931 GCTCCTCATTATTCACCTTTCACTAAA 59.663 37.037 0.00 0.00 0.00 1.85
9342 15926 9.231297 CTCCTCATTATTCACCTTTCACTAAAA 57.769 33.333 0.00 0.00 0.00 1.52
9343 15927 9.010029 TCCTCATTATTCACCTTTCACTAAAAC 57.990 33.333 0.00 0.00 0.00 2.43
9382 15966 2.878406 CCTTGCCTTATATGTCGTTGGG 59.122 50.000 0.00 0.00 0.00 4.12
9387 15971 5.547465 TGCCTTATATGTCGTTGGGATTAG 58.453 41.667 0.00 0.00 0.00 1.73
9408 15993 5.061721 AGTCTCATGGGTAACACCTTTTT 57.938 39.130 0.00 0.00 38.64 1.94
9470 16055 1.758862 GCTTAATGCCAAGCCCATCTT 59.241 47.619 3.98 0.00 44.22 2.40
9614 16199 4.717778 TCCCGAGATTACCATGTTTCCTTA 59.282 41.667 0.00 0.00 0.00 2.69
9635 16220 7.017254 TCCTTACTACAAGAAATTCCCTTCTGT 59.983 37.037 0.00 0.00 35.79 3.41
9637 16222 9.372369 CTTACTACAAGAAATTCCCTTCTGTAG 57.628 37.037 13.01 13.01 39.60 2.74
9643 16228 6.056090 AGAAATTCCCTTCTGTAGTCTTCC 57.944 41.667 0.00 0.00 34.31 3.46
9649 16234 2.303022 CCTTCTGTAGTCTTCCTGCCAA 59.697 50.000 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.901797 AAACTGGGAGCTTCCGCGG 62.902 63.158 22.12 22.12 42.32 6.46
34 35 7.394016 ACCAGTTTGGAAAGATTTTCAAAACT 58.606 30.769 22.34 22.34 44.68 2.66
41 42 6.119536 GGGAAAACCAGTTTGGAAAGATTTT 58.880 36.000 1.40 0.00 40.96 1.82
58 59 5.809719 TCAATTTTGCAAACTGGGAAAAC 57.190 34.783 12.39 0.00 40.18 2.43
125 131 7.011189 GCACAAATTCATCGATTTTGGAAAAG 58.989 34.615 19.83 9.18 37.28 2.27
144 150 5.852005 CAAAAGTTCACGAATTTGCACAAA 58.148 33.333 0.00 0.00 34.46 2.83
182 230 7.513371 AACGTTCACATATTGTAGGGAAAAA 57.487 32.000 0.00 0.00 0.00 1.94
183 231 7.513371 AAACGTTCACATATTGTAGGGAAAA 57.487 32.000 0.00 0.00 0.00 2.29
184 232 7.513371 AAAACGTTCACATATTGTAGGGAAA 57.487 32.000 0.00 0.00 0.00 3.13
185 233 7.513371 AAAAACGTTCACATATTGTAGGGAA 57.487 32.000 0.00 0.00 0.00 3.97
186 234 6.128499 CGAAAAACGTTCACATATTGTAGGGA 60.128 38.462 0.00 0.00 37.22 4.20
187 235 6.019152 CGAAAAACGTTCACATATTGTAGGG 58.981 40.000 0.00 0.00 37.22 3.53
188 236 6.823531 TCGAAAAACGTTCACATATTGTAGG 58.176 36.000 0.00 0.00 43.13 3.18
189 237 8.874745 ATTCGAAAAACGTTCACATATTGTAG 57.125 30.769 0.00 0.00 43.13 2.74
190 238 9.666626 AAATTCGAAAAACGTTCACATATTGTA 57.333 25.926 0.00 0.00 43.13 2.41
191 239 8.568732 AAATTCGAAAAACGTTCACATATTGT 57.431 26.923 0.00 0.00 43.13 2.71
192 240 8.686418 TGAAATTCGAAAAACGTTCACATATTG 58.314 29.630 0.00 0.00 43.13 1.90
193 241 8.789881 TGAAATTCGAAAAACGTTCACATATT 57.210 26.923 0.00 0.00 43.13 1.28
194 242 8.849490 CATGAAATTCGAAAAACGTTCACATAT 58.151 29.630 0.00 0.00 43.13 1.78
195 243 8.070769 TCATGAAATTCGAAAAACGTTCACATA 58.929 29.630 0.00 0.00 43.13 2.29
196 244 6.915300 TCATGAAATTCGAAAAACGTTCACAT 59.085 30.769 0.00 0.00 43.13 3.21
197 245 6.258899 TCATGAAATTCGAAAAACGTTCACA 58.741 32.000 0.00 0.00 43.13 3.58
198 246 6.726035 TCATGAAATTCGAAAAACGTTCAC 57.274 33.333 0.00 0.00 43.13 3.18
199 247 6.970043 AGTTCATGAAATTCGAAAAACGTTCA 59.030 30.769 10.35 7.85 43.13 3.18
200 248 7.376530 AGTTCATGAAATTCGAAAAACGTTC 57.623 32.000 10.35 2.26 43.13 3.95
201 249 7.749539 AAGTTCATGAAATTCGAAAAACGTT 57.250 28.000 15.05 0.00 43.13 3.99
202 250 7.749539 AAAGTTCATGAAATTCGAAAAACGT 57.250 28.000 20.35 0.13 43.13 3.99
308 357 9.528018 TGACCTTTGTGAAAAATAAATCTGAAC 57.472 29.630 0.00 0.00 0.00 3.18
386 435 5.827797 GCTTATTATTTGATCACCCAGGTCA 59.172 40.000 0.00 0.00 0.00 4.02
393 442 7.654520 TGGTACGTAGCTTATTATTTGATCACC 59.345 37.037 23.89 5.50 0.00 4.02
400 449 9.609346 AATCACTTGGTACGTAGCTTATTATTT 57.391 29.630 23.89 8.43 0.00 1.40
406 455 5.648178 TCAATCACTTGGTACGTAGCTTA 57.352 39.130 23.89 12.05 32.95 3.09
407 456 4.530710 TCAATCACTTGGTACGTAGCTT 57.469 40.909 23.89 7.50 32.95 3.74
411 460 5.242171 TGTCTCTTCAATCACTTGGTACGTA 59.758 40.000 0.00 0.00 32.95 3.57
414 463 6.223852 TCTTGTCTCTTCAATCACTTGGTAC 58.776 40.000 0.00 0.00 32.95 3.34
453 502 0.400213 TCGCTTGTGAATGGTCCCTT 59.600 50.000 0.00 0.00 0.00 3.95
468 2288 1.965754 GCTGACTCATCCCCTTCGCT 61.966 60.000 0.00 0.00 0.00 4.93
520 2340 1.598130 GGCCACACGAGAAGCACTT 60.598 57.895 0.00 0.00 0.00 3.16
539 2359 3.548484 AACACGTGTACCCCCGCA 61.548 61.111 23.69 0.00 0.00 5.69
540 2360 3.045492 CAACACGTGTACCCCCGC 61.045 66.667 23.69 0.00 0.00 6.13
560 2380 1.400846 TGTAATCAGACGCCTCGACTC 59.599 52.381 0.00 0.00 28.78 3.36
573 2393 5.614324 AGAGGATTCCAATCGTGTAATCA 57.386 39.130 5.29 0.00 36.27 2.57
843 3278 3.963383 TTTTTCCTCACGAAACAGAGC 57.037 42.857 0.00 0.00 40.23 4.09
896 3332 1.757118 TGGAGAAGGCCTGAAGATACG 59.243 52.381 5.69 0.00 0.00 3.06
947 3384 4.340097 GGTCTTTCCCCTTTTCGAGAAAAA 59.660 41.667 11.50 0.00 39.49 1.94
948 3385 3.887110 GGTCTTTCCCCTTTTCGAGAAAA 59.113 43.478 10.17 10.17 37.90 2.29
949 3386 3.137728 AGGTCTTTCCCCTTTTCGAGAAA 59.862 43.478 0.00 0.00 36.75 2.52
950 3387 2.709397 AGGTCTTTCCCCTTTTCGAGAA 59.291 45.455 0.00 0.00 36.75 2.87
951 3388 2.335933 AGGTCTTTCCCCTTTTCGAGA 58.664 47.619 0.00 0.00 36.75 4.04
952 3389 2.861147 AGGTCTTTCCCCTTTTCGAG 57.139 50.000 0.00 0.00 36.75 4.04
953 3390 2.709397 AGAAGGTCTTTCCCCTTTTCGA 59.291 45.455 0.00 0.00 42.37 3.71
954 3391 2.814336 CAGAAGGTCTTTCCCCTTTTCG 59.186 50.000 0.00 0.00 42.37 3.46
955 3392 4.100279 TCAGAAGGTCTTTCCCCTTTTC 57.900 45.455 0.00 0.00 42.37 2.29
956 3393 4.168088 TCTTCAGAAGGTCTTTCCCCTTTT 59.832 41.667 10.42 0.00 42.37 2.27
957 3394 3.722101 TCTTCAGAAGGTCTTTCCCCTTT 59.278 43.478 10.42 0.00 42.37 3.11
958 3395 3.327439 TCTTCAGAAGGTCTTTCCCCTT 58.673 45.455 10.42 0.00 44.98 3.95
959 3396 2.909662 CTCTTCAGAAGGTCTTTCCCCT 59.090 50.000 10.42 0.00 36.40 4.79
960 3397 2.616765 GCTCTTCAGAAGGTCTTTCCCC 60.617 54.545 10.42 0.00 36.40 4.81
961 3398 2.705730 GCTCTTCAGAAGGTCTTTCCC 58.294 52.381 10.42 0.00 36.40 3.97
962 3399 2.342179 CGCTCTTCAGAAGGTCTTTCC 58.658 52.381 10.42 0.00 36.40 3.13
963 3400 1.729517 GCGCTCTTCAGAAGGTCTTTC 59.270 52.381 10.42 0.00 35.97 2.62
964 3401 1.070758 TGCGCTCTTCAGAAGGTCTTT 59.929 47.619 9.73 0.00 0.00 2.52
965 3402 0.681733 TGCGCTCTTCAGAAGGTCTT 59.318 50.000 9.73 0.00 0.00 3.01
966 3403 0.681733 TTGCGCTCTTCAGAAGGTCT 59.318 50.000 9.73 0.00 0.00 3.85
967 3404 1.074752 CTTGCGCTCTTCAGAAGGTC 58.925 55.000 9.73 1.92 0.00 3.85
1023 3462 0.837691 TGTCCCTGCTGACACCAGAT 60.838 55.000 0.00 0.00 43.02 2.90
1092 3531 0.530744 CCTCGAGATCGTTTGGGTCA 59.469 55.000 15.71 0.00 40.80 4.02
1098 3537 2.414293 CGTCAAGTCCTCGAGATCGTTT 60.414 50.000 15.71 0.00 40.80 3.60
1104 3543 0.671796 TTTGCGTCAAGTCCTCGAGA 59.328 50.000 15.71 0.00 0.00 4.04
1173 3612 1.145738 ACATGCAAAACTGAGGGGAGT 59.854 47.619 0.00 0.00 0.00 3.85
1177 3616 1.815003 GGAGACATGCAAAACTGAGGG 59.185 52.381 0.00 0.00 0.00 4.30
1201 3640 3.801698 TGCAGATCTCACAAGAATAGGC 58.198 45.455 0.00 0.00 34.49 3.93
1205 3644 4.080469 AGGTGATGCAGATCTCACAAGAAT 60.080 41.667 17.49 0.00 42.83 2.40
1221 3660 2.937591 ACACGTACGTACAAGGTGATG 58.062 47.619 27.88 15.80 36.49 3.07
1288 3730 3.847042 TTCCTTTCTCCTCCACCTCTA 57.153 47.619 0.00 0.00 0.00 2.43
1308 3750 2.771943 TGATATCGAAGTGGAAGCCCTT 59.228 45.455 0.00 0.00 0.00 3.95
1325 3767 0.248336 GCACGACGGTCACGATGATA 60.248 55.000 9.10 0.00 44.60 2.15
1402 3844 2.028112 TCACTGATGACTGGGTAGCAAC 60.028 50.000 0.00 0.00 0.00 4.17
1404 3846 1.827344 CTCACTGATGACTGGGTAGCA 59.173 52.381 0.00 0.00 0.00 3.49
1406 3848 5.506483 CGAATACTCACTGATGACTGGGTAG 60.506 48.000 0.00 0.00 0.00 3.18
1437 3882 2.094894 GCATGCCTATATGTGTGCGATC 59.905 50.000 6.36 0.00 0.00 3.69
1438 3883 2.079158 GCATGCCTATATGTGTGCGAT 58.921 47.619 6.36 0.00 0.00 4.58
1439 3884 1.202627 TGCATGCCTATATGTGTGCGA 60.203 47.619 16.68 0.00 35.46 5.10
1440 3885 1.228533 TGCATGCCTATATGTGTGCG 58.771 50.000 16.68 0.00 35.46 5.34
1441 3886 2.094906 CCATGCATGCCTATATGTGTGC 60.095 50.000 21.69 0.00 0.00 4.57
1442 3887 3.151554 ACCATGCATGCCTATATGTGTG 58.848 45.455 21.69 5.45 0.00 3.82
1443 3888 3.513909 ACCATGCATGCCTATATGTGT 57.486 42.857 21.69 7.37 0.00 3.72
1452 3897 1.402968 CTCACAGTAACCATGCATGCC 59.597 52.381 21.69 8.30 0.00 4.40
1531 3976 3.711704 TCACCATCTCCTTGGAATAGTCC 59.288 47.826 1.18 1.18 45.21 3.85
1711 4180 1.786937 AACAGCCAAACATGGTGGAA 58.213 45.000 19.09 0.00 38.54 3.53
1769 4238 6.206634 TCAACAAGCACCCAGAAACTAATTAG 59.793 38.462 11.05 11.05 0.00 1.73
1861 4397 1.406180 GGACTCCTCGCTCTTAAGACC 59.594 57.143 0.00 0.00 0.00 3.85
1958 4612 2.111669 CTGTGCACAGCCAGGACA 59.888 61.111 32.39 0.33 37.15 4.02
1964 4618 1.003355 TAGAAGCCTGTGCACAGCC 60.003 57.895 36.38 28.71 42.47 4.85
1985 4639 1.839424 AGACATACTTTTGGCCAGCC 58.161 50.000 5.11 0.38 0.00 4.85
2012 4666 8.602472 AAGGATACCAATTTTAAGGCACATAA 57.398 30.769 0.00 0.00 37.17 1.90
2031 4686 8.749354 GCTCTTTTATTTTTGAAGGGAAGGATA 58.251 33.333 0.00 0.00 0.00 2.59
2189 5048 2.113986 GCCAGGCCTGACAAGTGT 59.886 61.111 34.91 0.00 0.00 3.55
2225 5115 4.502962 CTTGACAGGATGAGAGAGGTTTC 58.497 47.826 0.00 0.00 39.69 2.78
2238 5128 2.708861 TCCAAACTAAGGCTTGACAGGA 59.291 45.455 10.69 7.98 0.00 3.86
2432 5324 5.140454 CCCTACATTAATTAGGCCAAGCTT 58.860 41.667 5.01 0.00 35.61 3.74
2455 5347 3.003378 GTCAATCGGGGCTAGTTTAATGC 59.997 47.826 0.00 0.00 0.00 3.56
2474 5366 4.403113 TGGCACCTTGATTATACTACGTCA 59.597 41.667 0.00 0.00 0.00 4.35
2477 5369 5.408604 GGAATGGCACCTTGATTATACTACG 59.591 44.000 0.00 0.00 0.00 3.51
2496 5388 4.617959 CAATCAGCTGCCTAATTGGAATG 58.382 43.478 9.47 0.00 38.35 2.67
2505 5398 2.891936 CGCGCAATCAGCTGCCTA 60.892 61.111 9.47 0.00 42.61 3.93
2545 5438 1.202533 AGTACTATGGCATGTGGCGAC 60.203 52.381 10.98 0.00 46.16 5.19
2558 5451 4.969359 ACTTCACATAAGGCCCAGTACTAT 59.031 41.667 0.00 0.00 0.00 2.12
2559 5452 4.161565 CACTTCACATAAGGCCCAGTACTA 59.838 45.833 0.00 0.00 0.00 1.82
2591 5485 7.625682 GGGAAGATGAATAGATAGGGATAAGGT 59.374 40.741 0.00 0.00 0.00 3.50
2689 5583 2.091610 AGAGATGGAAGAGGTGATCGGA 60.092 50.000 0.00 0.00 0.00 4.55
2721 5615 0.535335 GATTAGCAGACGGTGGTGGA 59.465 55.000 2.30 0.00 37.49 4.02
2733 5627 3.116073 CGTGTCACGTGGATTAGCA 57.884 52.632 17.00 3.00 36.74 3.49
2828 5722 0.517316 CAGCAAGCGGTGGTTTAGTC 59.483 55.000 0.00 0.00 35.13 2.59
2852 5746 5.289595 CAATTAGAATGTGTAGCTCGCCTA 58.710 41.667 0.00 0.00 0.00 3.93
2858 5752 7.524717 AAACAACCAATTAGAATGTGTAGCT 57.475 32.000 0.00 0.00 0.00 3.32
2870 5764 8.242053 TCAGTTTTGTCGTAAAACAACCAATTA 58.758 29.630 22.78 5.91 41.29 1.40
2968 5863 7.987458 TCATGAATGATACTTCACCTTTAGACC 59.013 37.037 0.00 0.00 37.93 3.85
2970 5865 7.987458 GGTCATGAATGATACTTCACCTTTAGA 59.013 37.037 0.00 0.00 37.93 2.10
3010 5905 5.994668 AGCTTCAAGAGGACAAAAACTAGAG 59.005 40.000 0.00 0.00 0.00 2.43
3159 6054 6.374613 GGATATTCGACTTTGGAGGACTTTTT 59.625 38.462 0.00 0.00 0.00 1.94
3160 6055 5.880887 GGATATTCGACTTTGGAGGACTTTT 59.119 40.000 0.00 0.00 0.00 2.27
3297 6196 4.755629 CCAAATGCATGGAATTTTGACACA 59.244 37.500 13.12 0.00 43.54 3.72
3347 6246 7.660112 TGTGCACTGTTCAAATCTGATTTATT 58.340 30.769 19.41 0.00 0.00 1.40
3348 6247 7.218228 TGTGCACTGTTCAAATCTGATTTAT 57.782 32.000 19.41 0.00 0.00 1.40
3349 6248 6.631971 TGTGCACTGTTCAAATCTGATTTA 57.368 33.333 19.41 0.00 0.00 1.40
3390 6289 4.360951 ACAAGGACAAATTTCGGGTCTA 57.639 40.909 6.99 0.00 0.00 2.59
3427 6326 7.355332 CAAATTTCAGAACATTTGGATGTCC 57.645 36.000 15.84 0.00 45.58 4.02
3575 6476 7.218314 AGGAAGTGGATTTTAGAGGAATGAT 57.782 36.000 0.00 0.00 0.00 2.45
3702 6605 9.221933 TGAATAGCGGTTCTTAAGTATTGAAAA 57.778 29.630 1.63 0.00 0.00 2.29
3785 6692 3.791887 CGATGAGAAGTATTGTGGTCGAC 59.208 47.826 7.13 7.13 30.02 4.20
3835 6742 6.957631 TGGACATATATTTTGCCCGATAGAT 58.042 36.000 0.00 0.00 39.76 1.98
3839 6746 4.985538 ACTGGACATATATTTTGCCCGAT 58.014 39.130 0.00 0.00 0.00 4.18
3884 6791 0.036858 AAGGAGCAGCTCGGAAGTTC 60.037 55.000 16.47 0.35 0.00 3.01
3983 6891 1.039856 ATTTCGGCAAAGGCACAACT 58.960 45.000 0.00 0.00 43.71 3.16
3987 6895 0.031994 ACACATTTCGGCAAAGGCAC 59.968 50.000 0.00 0.00 43.71 5.01
4043 6952 7.964604 AAAGTAAATCACTCAGAAGTACCAC 57.035 36.000 0.00 0.00 36.04 4.16
4059 6969 8.664669 ATGTTCAGGGACCAAATAAAGTAAAT 57.335 30.769 0.00 0.00 0.00 1.40
4141 7449 2.092323 GTAACCATGCTTGGAAGGACC 58.908 52.381 24.48 3.30 46.92 4.46
4202 7510 5.195940 CCATGGATGGGTATAGGCTATTTG 58.804 45.833 13.08 0.00 44.31 2.32
4268 7579 3.531397 TGGGGTGATTTGAATAGGTGGAT 59.469 43.478 0.00 0.00 0.00 3.41
4276 7587 3.011595 TGATGGAGTGGGGTGATTTGAAT 59.988 43.478 0.00 0.00 0.00 2.57
4282 7593 0.620556 GTGTGATGGAGTGGGGTGAT 59.379 55.000 0.00 0.00 0.00 3.06
4283 7594 0.473694 AGTGTGATGGAGTGGGGTGA 60.474 55.000 0.00 0.00 0.00 4.02
4287 7598 3.981071 TCTTAAGTGTGATGGAGTGGG 57.019 47.619 1.63 0.00 0.00 4.61
4342 7689 1.371467 TCCTGGCCTTGGAAGAATCA 58.629 50.000 14.32 0.00 0.00 2.57
4373 7720 6.641169 TGAACTAGAGATGTAGGTATGCAG 57.359 41.667 0.00 0.00 0.00 4.41
4421 7768 1.056660 TCAAAGGGGTCACTCTCACC 58.943 55.000 0.00 0.00 0.00 4.02
4519 7867 0.678395 CCATCTAGGATGCGCTCACT 59.322 55.000 9.73 6.23 41.22 3.41
4596 7944 2.423538 GACAACAAGGTCAACACAAGCT 59.576 45.455 0.00 0.00 37.73 3.74
4607 7955 5.185056 AGTTTTTAGCACAAGACAACAAGGT 59.815 36.000 0.00 0.00 0.00 3.50
4712 8061 0.179056 ACCACTTGCAGCTAACACGT 60.179 50.000 0.00 0.00 0.00 4.49
4732 8081 1.301716 GACGGCTGCCAACTCTTGA 60.302 57.895 20.29 0.00 0.00 3.02
4809 8159 0.898320 TCTTCTGTGTGCTAGAGGGC 59.102 55.000 0.00 0.00 0.00 5.19
4823 8173 1.005037 TTGCGCACCGACATCTTCT 60.005 52.632 11.12 0.00 0.00 2.85
4880 8230 8.152898 CAGATGTCTTATTCATAGGGTGATGAA 58.847 37.037 1.60 1.60 46.93 2.57
5063 8413 3.112709 GACGGTGCGCTCCAAGAC 61.113 66.667 26.64 7.04 0.00 3.01
5109 8459 9.522804 GTATTTGATACTTCCACTCTAACTCAG 57.477 37.037 0.00 0.00 33.00 3.35
5151 8501 4.141287 CCCTGGTACAACTTGTCATCAAA 58.859 43.478 0.00 0.00 38.70 2.69
5195 8562 5.354234 CACAGACGGCAAATTTCCTAATACT 59.646 40.000 0.00 0.00 0.00 2.12
5200 8567 2.039216 TCCACAGACGGCAAATTTCCTA 59.961 45.455 0.00 0.00 0.00 2.94
5242 8610 0.323725 ATTTTGCTGTCAGCCCCGAT 60.324 50.000 21.99 8.11 41.51 4.18
5254 8622 5.562890 GCCGTCACTTTTTCTCTATTTTGCT 60.563 40.000 0.00 0.00 0.00 3.91
5277 9568 6.183360 GCTCTTTGCTGACATTAGAAATTTGC 60.183 38.462 0.00 0.00 38.95 3.68
5440 9752 0.319555 CTCTTGCCGACGACCAGAAA 60.320 55.000 0.00 0.00 0.00 2.52
5443 9755 0.319555 TTTCTCTTGCCGACGACCAG 60.320 55.000 0.00 0.00 0.00 4.00
5483 9796 1.334556 TGCCACATCATAAATCTGCGC 59.665 47.619 0.00 0.00 0.00 6.09
5540 9853 0.252696 AGAGGTGCATGTAGGGTGGA 60.253 55.000 0.00 0.00 0.00 4.02
5710 10065 3.936203 GGAGGTGGTGTGGCGACA 61.936 66.667 0.00 0.00 38.70 4.35
5732 10087 1.147153 TGTGACGGTGCAACATGGA 59.853 52.632 0.98 0.00 39.98 3.41
5748 10103 0.329261 CACATGGATGGAGGTGGTGT 59.671 55.000 0.00 0.00 0.00 4.16
5763 10118 1.081892 GAGTTGATGCAGCGACACAT 58.918 50.000 23.66 3.59 0.00 3.21
5764 10119 0.033920 AGAGTTGATGCAGCGACACA 59.966 50.000 23.66 0.00 0.00 3.72
5776 10131 1.719063 AAGGGCTGGGCAAGAGTTGA 61.719 55.000 0.00 0.00 0.00 3.18
5872 10227 2.360475 GCAAGGAGAAGGCGGCTT 60.360 61.111 25.83 25.83 0.00 4.35
5945 10300 0.547954 GGGAGGAGGAAGGTGAAGGT 60.548 60.000 0.00 0.00 0.00 3.50
5998 10353 4.882559 AGATCTGGGAGAGAGAGAAACAT 58.117 43.478 0.00 0.00 32.80 2.71
6029 10392 2.679349 GCCATGTCCTTTGAGGAGAGAC 60.679 54.545 0.00 0.00 46.90 3.36
6134 10498 0.250295 CGTCAGGGAGTTTTGCAGGA 60.250 55.000 0.00 0.00 0.00 3.86
6169 10533 0.469705 ATTCAAGGTGCAAGTGGGCA 60.470 50.000 0.00 0.00 42.53 5.36
6191 10559 1.462238 AGTGCCAGGGAAGAGGTGT 60.462 57.895 0.00 0.00 0.00 4.16
6493 10863 2.122783 TTCCTCGGCGAATGGAAAAT 57.877 45.000 23.40 0.00 36.98 1.82
6502 10872 0.740868 CATGAGCTTTTCCTCGGCGA 60.741 55.000 10.14 10.14 34.56 5.54
6609 10983 6.483307 TCCAAGAATTTGAAGACACACACTAG 59.517 38.462 0.00 0.00 36.36 2.57
6620 10994 8.600625 CACAAATATGCATCCAAGAATTTGAAG 58.399 33.333 25.99 17.65 35.46 3.02
6626 11000 7.356089 ACATCACAAATATGCATCCAAGAAT 57.644 32.000 0.19 0.00 0.00 2.40
6647 11021 1.272212 GAAATGGGTTTGCCACGACAT 59.728 47.619 0.00 0.00 36.17 3.06
6652 11026 3.193479 CCTAAGAGAAATGGGTTTGCCAC 59.807 47.826 0.00 0.00 36.17 5.01
6804 11182 5.657474 AGAATTTGCTAGACATTTGGCATG 58.343 37.500 0.00 0.00 34.59 4.06
6836 11216 1.455217 CGTATGAGGGAGGGGTCGT 60.455 63.158 0.00 0.00 0.00 4.34
6919 11299 8.655651 TTGGTGGAAAGAAAAACAATGTATTC 57.344 30.769 4.31 4.31 0.00 1.75
6974 11354 3.270027 CACCACAAAAGATCGATGGCTA 58.730 45.455 0.54 0.00 33.46 3.93
7071 13565 8.358148 CCTAACTAAGTACATAATGGTCGATGT 58.642 37.037 0.00 0.00 39.57 3.06
7092 13586 6.171213 ACAATGGTAAGCTCTACAACCTAAC 58.829 40.000 0.00 0.00 32.99 2.34
7145 13639 9.908152 ATTTTTATTATATTTACGCTTCTGGGC 57.092 29.630 0.00 0.00 0.00 5.36
7192 13686 6.374417 TTGGAAAGGAACTACTCTAATGCT 57.626 37.500 0.00 0.00 38.49 3.79
7213 13707 5.240183 AGTTCTGACACATTGTGAAGGATTG 59.760 40.000 23.12 6.18 36.96 2.67
7228 13722 1.538204 GGACGCAACAGAGTTCTGACA 60.538 52.381 15.63 0.00 46.59 3.58
7231 13725 4.487318 TGAGGGACGCAACAGAGTTCTG 62.487 54.545 7.57 7.57 40.95 3.02
7250 13744 1.148273 GTGGACTTGGTGCCAGTGA 59.852 57.895 0.00 0.00 34.22 3.41
7298 13792 6.817765 TTCTTACAAAGACATGGACAATCC 57.182 37.500 0.00 0.00 37.23 3.01
7312 13806 7.071321 AGGAGAGAAGGAAGAGTTTCTTACAAA 59.929 37.037 4.03 0.00 39.81 2.83
7313 13807 6.555360 AGGAGAGAAGGAAGAGTTTCTTACAA 59.445 38.462 4.03 0.00 39.81 2.41
7386 13880 4.097286 GCTTCCACTTGGTGTAGTTTTTGA 59.903 41.667 0.00 0.00 36.34 2.69
7502 13996 2.552743 GCCACATGATGATGGTGAGATG 59.447 50.000 0.00 0.00 38.34 2.90
7553 14047 5.177511 CGTTCTCTGTTGACATGTACACATT 59.822 40.000 0.00 0.00 33.61 2.71
7654 14148 5.476945 ACCTCGAAATGTTGCCTAGAAATTT 59.523 36.000 0.00 0.00 0.00 1.82
7674 14168 1.202568 TGGCGATGATCATGTCACCTC 60.203 52.381 14.30 0.00 40.28 3.85
7810 14371 0.846693 GGTGGAGTATGGAGGCCATT 59.153 55.000 5.01 0.00 42.23 3.16
7863 14427 6.922957 TGATTGCCTTAAGAAACAACAATGAC 59.077 34.615 3.36 0.00 0.00 3.06
7868 14432 5.843673 TGTGATTGCCTTAAGAAACAACA 57.156 34.783 3.36 4.20 0.00 3.33
7912 14477 2.351276 GAGTGTCGGGGTGCCATT 59.649 61.111 0.00 0.00 0.00 3.16
7914 14479 3.936203 GTGAGTGTCGGGGTGCCA 61.936 66.667 0.00 0.00 0.00 4.92
7920 14485 0.034756 TGTTGATGGTGAGTGTCGGG 59.965 55.000 0.00 0.00 0.00 5.14
7968 14533 0.246635 TGCTCCTAGAAGTTGGCGAC 59.753 55.000 0.00 0.00 0.00 5.19
7988 14553 0.602638 TGTCTTGTTACCTGCTGCCG 60.603 55.000 0.00 0.00 0.00 5.69
8123 14688 3.011708 AGGAAACTAGGGATGCCATGTTT 59.988 43.478 20.45 20.45 40.61 2.83
8147 14713 3.941483 CCATGGAGCGAATTTTACAGACT 59.059 43.478 5.56 0.00 0.00 3.24
8151 14717 4.433186 CAACCATGGAGCGAATTTTACA 57.567 40.909 21.47 0.00 0.00 2.41
8190 14756 2.906897 AAGCACAACGCCACTGGG 60.907 61.111 0.00 0.00 44.04 4.45
8201 14767 0.534877 AACGACAGCATCCAAGCACA 60.535 50.000 0.00 0.00 36.85 4.57
8216 14782 0.606604 GGTAGAACCAGCAGGAACGA 59.393 55.000 0.35 0.00 38.42 3.85
8317 14887 9.950680 TGAGACATTTCTTATTTGAGTTTTCAC 57.049 29.630 0.00 0.00 28.90 3.18
8327 14897 6.721318 TGGGCTAGTGAGACATTTCTTATTT 58.279 36.000 0.00 0.00 28.74 1.40
8362 14932 3.133141 TCGTGGTCCATGAACAAATCA 57.867 42.857 11.60 0.00 43.67 2.57
8367 14937 0.605319 GGCTTCGTGGTCCATGAACA 60.605 55.000 20.63 4.04 34.89 3.18
8395 14965 7.926555 TCGGGAATAAGACTTGTCTCATTAATC 59.073 37.037 3.58 0.00 0.00 1.75
8399 14969 5.677319 TCGGGAATAAGACTTGTCTCATT 57.323 39.130 3.58 1.26 0.00 2.57
8505 15081 9.748708 TGAGGAAACTAAAATTTGTTCAGATTG 57.251 29.630 0.00 0.00 44.43 2.67
8582 15158 9.321562 CCATAGGGATCAAATTCAAATGAAAAG 57.678 33.333 0.00 0.00 35.13 2.27
8618 15194 4.292186 TCTCATTGTTGCTAGCTCCTTT 57.708 40.909 17.23 0.00 0.00 3.11
8624 15200 2.620585 GGGGATTCTCATTGTTGCTAGC 59.379 50.000 8.10 8.10 0.00 3.42
8676 15252 5.010282 ACCTTTATTCATCAAGCGGAAGTT 58.990 37.500 0.00 0.00 0.00 2.66
8686 15262 3.448093 TGGTGCCACCTTTATTCATCA 57.552 42.857 16.23 0.00 39.58 3.07
8756 15332 0.035881 CAGAAGCTTGCCCTGAGTGA 59.964 55.000 2.10 0.00 0.00 3.41
8762 15338 1.133668 ACAGAAACAGAAGCTTGCCCT 60.134 47.619 2.10 0.00 0.00 5.19
9002 15585 5.713025 TGTGTAATGGACTAGTTCGGTAAC 58.287 41.667 0.00 0.00 35.72 2.50
9005 15588 4.039488 TGTTGTGTAATGGACTAGTTCGGT 59.961 41.667 0.00 0.00 0.00 4.69
9036 15619 2.120312 TGTTGGAGGGTAATATCGGCA 58.880 47.619 0.00 0.00 0.00 5.69
9056 15639 5.419471 TGGTTAAGCACAAAGGTGTAAAAGT 59.581 36.000 2.54 0.00 46.95 2.66
9115 15698 4.990426 GGTTGATGAATTTTCACCACCTTG 59.010 41.667 0.00 0.00 40.49 3.61
9176 15760 7.496346 AGGTTGGAGACTATAGATTGTTTCA 57.504 36.000 6.78 0.00 0.00 2.69
9217 15801 2.205342 AGGCCATATGGGTACTTGTGT 58.795 47.619 23.30 0.00 39.65 3.72
9250 15834 1.078497 CCGCATAGACCAGGCACAA 60.078 57.895 0.00 0.00 31.94 3.33
9271 15855 0.691078 GGGAGAGGGGATGTGTGCTA 60.691 60.000 0.00 0.00 0.00 3.49
9277 15861 1.237458 GCCTAGGGAGAGGGGATGT 59.763 63.158 11.72 0.00 37.06 3.06
9282 15866 1.065126 CAACAAAGCCTAGGGAGAGGG 60.065 57.143 11.72 0.00 37.06 4.30
9308 15892 5.595952 AGGTGAATAATGAGGAGCCAAATTC 59.404 40.000 0.00 0.00 0.00 2.17
9341 15925 1.899142 GTGGGTGGTGGCATTATTGTT 59.101 47.619 0.00 0.00 0.00 2.83
9342 15926 1.555967 GTGGGTGGTGGCATTATTGT 58.444 50.000 0.00 0.00 0.00 2.71
9343 15927 0.823460 GGTGGGTGGTGGCATTATTG 59.177 55.000 0.00 0.00 0.00 1.90
9382 15966 5.615925 AGGTGTTACCCATGAGACTAATC 57.384 43.478 0.00 0.00 39.75 1.75
9387 15971 4.558697 GCAAAAAGGTGTTACCCATGAGAC 60.559 45.833 0.00 0.00 39.75 3.36
9408 15993 5.237561 TCTGTAAAGCGTATTGTTTCTTGCA 59.762 36.000 0.00 0.00 0.00 4.08
9470 16055 1.754380 CTGGGTGTCAACGAGGGTGA 61.754 60.000 0.00 0.00 0.00 4.02
9551 16136 2.493278 GAGTTGGGTACTGCAATGCATT 59.507 45.455 8.91 5.99 38.13 3.56
9614 16199 7.235812 AGACTACAGAAGGGAATTTCTTGTAGT 59.764 37.037 17.64 17.64 44.01 2.73
9635 16220 1.729586 ACAGGTTGGCAGGAAGACTA 58.270 50.000 0.00 0.00 0.00 2.59
9637 16222 0.954452 CAACAGGTTGGCAGGAAGAC 59.046 55.000 4.25 0.00 36.95 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.