Multiple sequence alignment - TraesCS5A01G395800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G395800 chr5A 100.000 2870 0 0 1 2870 590851703 590848834 0.000000e+00 5301.0
1 TraesCS5A01G395800 chr5B 89.994 1689 87 22 673 2320 577525173 577523526 0.000000e+00 2108.0
2 TraesCS5A01G395800 chr5B 75.535 1169 189 58 962 2069 577531344 577530212 4.300000e-133 484.0
3 TraesCS5A01G395800 chr5B 95.113 266 8 4 2406 2670 577523080 577522819 5.720000e-112 414.0
4 TraesCS5A01G395800 chr5B 97.653 213 5 0 2658 2870 577522693 577522481 1.620000e-97 366.0
5 TraesCS5A01G395800 chr5B 94.762 210 7 3 2424 2632 577528783 577528577 9.920000e-85 324.0
6 TraesCS5A01G395800 chr5D 90.663 1403 68 30 961 2318 470049235 470047851 0.000000e+00 1807.0
7 TraesCS5A01G395800 chr5D 96.644 447 9 2 2424 2870 470045405 470044965 0.000000e+00 737.0
8 TraesCS5A01G395800 chr5D 91.964 448 19 4 2318 2765 470051906 470051476 1.890000e-171 612.0
9 TraesCS5A01G395800 chr5D 94.295 298 16 1 653 950 470049599 470049303 3.370000e-124 455.0
10 TraesCS5A01G395800 chr5D 97.059 34 1 0 935 968 470049352 470049319 1.110000e-04 58.4
11 TraesCS5A01G395800 chr7A 98.928 653 7 0 1 653 7638792 7638140 0.000000e+00 1168.0
12 TraesCS5A01G395800 chr7A 97.706 654 15 0 1 654 44038514 44037861 0.000000e+00 1125.0
13 TraesCS5A01G395800 chr6A 97.856 653 13 1 1 653 184804512 184805163 0.000000e+00 1127.0
14 TraesCS5A01G395800 chr6A 97.703 653 15 0 1 653 421144868 421144216 0.000000e+00 1123.0
15 TraesCS5A01G395800 chr6A 97.554 654 14 1 1 654 582776862 582776211 0.000000e+00 1118.0
16 TraesCS5A01G395800 chr6A 97.243 653 15 2 1 653 165333372 165334021 0.000000e+00 1103.0
17 TraesCS5A01G395800 chr1A 97.706 654 13 1 1 654 13160089 13160740 0.000000e+00 1123.0
18 TraesCS5A01G395800 chr1A 97.256 656 14 3 1 654 467417980 467418633 0.000000e+00 1109.0
19 TraesCS5A01G395800 chr1A 97.095 654 17 1 1 654 467770956 467770305 0.000000e+00 1101.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G395800 chr5A 590848834 590851703 2869 True 5301.00 5301 100.0000 1 2870 1 chr5A.!!$R1 2869
1 TraesCS5A01G395800 chr5B 577522481 577531344 8863 True 739.20 2108 90.6114 673 2870 5 chr5B.!!$R1 2197
2 TraesCS5A01G395800 chr5D 470044965 470051906 6941 True 733.88 1807 94.1250 653 2870 5 chr5D.!!$R1 2217
3 TraesCS5A01G395800 chr7A 7638140 7638792 652 True 1168.00 1168 98.9280 1 653 1 chr7A.!!$R1 652
4 TraesCS5A01G395800 chr7A 44037861 44038514 653 True 1125.00 1125 97.7060 1 654 1 chr7A.!!$R2 653
5 TraesCS5A01G395800 chr6A 184804512 184805163 651 False 1127.00 1127 97.8560 1 653 1 chr6A.!!$F2 652
6 TraesCS5A01G395800 chr6A 421144216 421144868 652 True 1123.00 1123 97.7030 1 653 1 chr6A.!!$R1 652
7 TraesCS5A01G395800 chr6A 582776211 582776862 651 True 1118.00 1118 97.5540 1 654 1 chr6A.!!$R2 653
8 TraesCS5A01G395800 chr6A 165333372 165334021 649 False 1103.00 1103 97.2430 1 653 1 chr6A.!!$F1 652
9 TraesCS5A01G395800 chr1A 13160089 13160740 651 False 1123.00 1123 97.7060 1 654 1 chr1A.!!$F1 653
10 TraesCS5A01G395800 chr1A 467417980 467418633 653 False 1109.00 1109 97.2560 1 654 1 chr1A.!!$F2 653
11 TraesCS5A01G395800 chr1A 467770305 467770956 651 True 1101.00 1101 97.0950 1 654 1 chr1A.!!$R1 653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
671 675 0.035725 GACCGGTCCCCCTGTTTAAG 60.036 60.0 24.75 0.0 0.0 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2371 8625 0.099259 CGATTGCATGCACCGAATGT 59.901 50.0 27.83 7.97 0.0 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
205 206 2.743195 CTTGAAGGTCGAGCTTCGG 58.257 57.895 37.76 30.93 40.88 4.30
654 658 4.538746 AGCCCTGTTTTCTACTAGTGAC 57.461 45.455 5.39 0.00 0.00 3.67
656 660 3.846360 CCCTGTTTTCTACTAGTGACCG 58.154 50.000 5.39 0.00 0.00 4.79
657 661 3.368116 CCCTGTTTTCTACTAGTGACCGG 60.368 52.174 5.39 0.00 0.00 5.28
658 662 3.257624 CCTGTTTTCTACTAGTGACCGGT 59.742 47.826 6.92 6.92 0.00 5.28
659 663 4.483311 CTGTTTTCTACTAGTGACCGGTC 58.517 47.826 28.17 28.17 0.00 4.79
662 666 0.257039 TCTACTAGTGACCGGTCCCC 59.743 60.000 31.19 21.12 0.00 4.81
663 667 0.754587 CTACTAGTGACCGGTCCCCC 60.755 65.000 31.19 18.60 0.00 5.40
664 668 1.217057 TACTAGTGACCGGTCCCCCT 61.217 60.000 31.19 24.06 0.00 4.79
666 670 2.800159 CTAGTGACCGGTCCCCCTGT 62.800 65.000 31.19 11.73 0.00 4.00
667 671 2.390777 TAGTGACCGGTCCCCCTGTT 62.391 60.000 31.19 6.57 0.00 3.16
668 672 2.448931 TGACCGGTCCCCCTGTTT 60.449 61.111 31.19 0.00 0.00 2.83
669 673 1.152074 TGACCGGTCCCCCTGTTTA 60.152 57.895 31.19 6.76 0.00 2.01
670 674 0.767446 TGACCGGTCCCCCTGTTTAA 60.767 55.000 31.19 5.95 0.00 1.52
671 675 0.035725 GACCGGTCCCCCTGTTTAAG 60.036 60.000 24.75 0.00 0.00 1.85
672 676 1.301954 CCGGTCCCCCTGTTTAAGG 59.698 63.158 0.00 0.00 46.94 2.69
698 6270 0.811281 GCGAGAGGAAATTTGTGGGG 59.189 55.000 0.00 0.00 0.00 4.96
703 6275 3.895041 GAGAGGAAATTTGTGGGGTTTGA 59.105 43.478 0.00 0.00 0.00 2.69
770 6342 4.201580 GGCACGCAACTGCATTAAATAAAC 60.202 41.667 2.12 0.00 42.21 2.01
780 6352 9.586435 AACTGCATTAAATAAACTAATCAAGCC 57.414 29.630 0.00 0.00 0.00 4.35
790 6362 3.335579 ACTAATCAAGCCGTGGAGAAAC 58.664 45.455 0.00 0.00 0.00 2.78
833 6406 6.747659 AACATCTAAATCGTTTTGTTGTGC 57.252 33.333 1.69 0.00 31.84 4.57
912 6485 6.152932 AGCCATATATTCAACCAAAAGCAG 57.847 37.500 0.00 0.00 0.00 4.24
991 6621 8.844244 AGATTGCTTTTGGTTTATATCTGCTAG 58.156 33.333 0.00 0.00 0.00 3.42
1028 6664 0.035317 TGCAGGTGTAGAAGCCACAG 59.965 55.000 0.00 0.00 34.46 3.66
1091 6727 2.557924 CCATTTTAAGACAGCAGCCACA 59.442 45.455 0.00 0.00 0.00 4.17
1112 6749 2.042979 AGCCACAACCATAACCCATTCT 59.957 45.455 0.00 0.00 0.00 2.40
1352 7025 2.159517 GGTACGTACAAGGATTCGACGT 60.160 50.000 26.02 3.72 45.17 4.34
1353 7026 2.712057 ACGTACAAGGATTCGACGTT 57.288 45.000 0.00 0.00 41.89 3.99
1354 7027 3.017265 ACGTACAAGGATTCGACGTTT 57.983 42.857 0.00 0.00 41.89 3.60
1355 7028 2.982470 ACGTACAAGGATTCGACGTTTC 59.018 45.455 0.00 0.00 41.89 2.78
1356 7029 3.240069 CGTACAAGGATTCGACGTTTCT 58.760 45.455 0.00 0.00 30.84 2.52
1394 7067 2.427506 GTTTCTCCGGCTGACTCAATT 58.572 47.619 0.00 0.00 0.00 2.32
1395 7068 2.386661 TTCTCCGGCTGACTCAATTC 57.613 50.000 0.00 0.00 0.00 2.17
1408 7081 1.061131 CTCAATTCGTGTCATCGTGCC 59.939 52.381 0.00 0.00 0.00 5.01
1751 7442 3.996744 GACGAGGACGAAGCGACGG 62.997 68.421 9.92 0.00 42.66 4.79
1759 7450 1.226323 CGAAGCGACGGTGGAGTAG 60.226 63.158 0.00 0.00 0.00 2.57
1774 7465 4.079253 TGGAGTAGAAGGAACAAAATGGC 58.921 43.478 0.00 0.00 0.00 4.40
1824 7515 3.239941 CGTAAATTAGGCGTCTCGTTGAG 59.760 47.826 0.00 0.00 0.00 3.02
1918 7610 6.695713 AGAGAACGAATTAAAAGGTGCAAAAC 59.304 34.615 0.00 0.00 0.00 2.43
1933 7625 5.288472 GGTGCAAAACGGATCATTTTATGTC 59.712 40.000 6.61 0.85 0.00 3.06
1946 7638 9.651718 GATCATTTTATGTCGGTAACTCATTTC 57.348 33.333 0.00 0.00 32.61 2.17
2143 7835 5.708948 TGGAAATTAACGCCATTTCAGAAG 58.291 37.500 13.55 0.00 40.88 2.85
2144 7836 4.562789 GGAAATTAACGCCATTTCAGAAGC 59.437 41.667 13.55 0.00 40.88 3.86
2161 7853 2.333389 AGCGTATGTACATAGCTCGC 57.667 50.000 28.34 28.34 36.89 5.03
2234 7928 5.668558 ACTACAATGTTCTGTTCGGAAAC 57.331 39.130 0.00 0.00 35.85 2.78
2303 7997 2.890311 TCCGAACATCCTTGCACAAAAT 59.110 40.909 0.00 0.00 0.00 1.82
2310 8004 7.008628 CGAACATCCTTGCACAAAATATCTTTC 59.991 37.037 0.00 0.00 0.00 2.62
2349 8603 2.162681 CCAACCAGAAGGGAATGTCAC 58.837 52.381 0.00 0.00 41.15 3.67
2350 8604 2.224867 CCAACCAGAAGGGAATGTCACT 60.225 50.000 0.00 0.00 41.15 3.41
2352 8606 3.983044 ACCAGAAGGGAATGTCACTAC 57.017 47.619 0.00 0.00 41.15 2.73
2353 8607 2.572104 ACCAGAAGGGAATGTCACTACC 59.428 50.000 0.00 0.00 41.15 3.18
2354 8608 2.571653 CCAGAAGGGAATGTCACTACCA 59.428 50.000 0.00 0.00 40.01 3.25
2356 8610 4.256920 CAGAAGGGAATGTCACTACCAAG 58.743 47.826 0.00 0.00 24.29 3.61
2357 8611 2.789409 AGGGAATGTCACTACCAAGC 57.211 50.000 0.00 0.00 0.00 4.01
2358 8612 1.985159 AGGGAATGTCACTACCAAGCA 59.015 47.619 0.00 0.00 0.00 3.91
2359 8613 2.375174 AGGGAATGTCACTACCAAGCAA 59.625 45.455 0.00 0.00 0.00 3.91
2361 8615 3.559171 GGGAATGTCACTACCAAGCAAGA 60.559 47.826 0.00 0.00 0.00 3.02
2362 8616 3.437049 GGAATGTCACTACCAAGCAAGAC 59.563 47.826 0.00 0.00 0.00 3.01
2363 8617 2.148916 TGTCACTACCAAGCAAGACG 57.851 50.000 0.00 0.00 0.00 4.18
2364 8618 0.790814 GTCACTACCAAGCAAGACGC 59.209 55.000 0.00 0.00 42.91 5.19
2365 8619 0.320421 TCACTACCAAGCAAGACGCC 60.320 55.000 0.00 0.00 44.04 5.68
2366 8620 0.602638 CACTACCAAGCAAGACGCCA 60.603 55.000 0.00 0.00 44.04 5.69
2367 8621 0.107831 ACTACCAAGCAAGACGCCAA 59.892 50.000 0.00 0.00 44.04 4.52
2368 8622 0.798776 CTACCAAGCAAGACGCCAAG 59.201 55.000 0.00 0.00 44.04 3.61
2369 8623 0.394938 TACCAAGCAAGACGCCAAGA 59.605 50.000 0.00 0.00 44.04 3.02
2370 8624 0.465460 ACCAAGCAAGACGCCAAGAA 60.465 50.000 0.00 0.00 44.04 2.52
2371 8625 0.667993 CCAAGCAAGACGCCAAGAAA 59.332 50.000 0.00 0.00 44.04 2.52
2372 8626 1.600413 CCAAGCAAGACGCCAAGAAAC 60.600 52.381 0.00 0.00 44.04 2.78
2373 8627 1.065401 CAAGCAAGACGCCAAGAAACA 59.935 47.619 0.00 0.00 44.04 2.83
2374 8628 1.609208 AGCAAGACGCCAAGAAACAT 58.391 45.000 0.00 0.00 44.04 2.71
2381 10004 0.729140 CGCCAAGAAACATTCGGTGC 60.729 55.000 0.00 0.00 34.02 5.01
2407 10030 2.554636 CGCTGGCAAGGCTGACAAA 61.555 57.895 4.73 0.00 41.21 2.83
2419 10462 2.589014 GCTGACAAAAAGAAGCATCGG 58.411 47.619 0.00 0.00 35.69 4.18
2422 10465 4.222114 CTGACAAAAAGAAGCATCGGAAC 58.778 43.478 0.00 0.00 0.00 3.62
2439 10482 2.571206 GAACGAGTTCAATCCAAACGC 58.429 47.619 10.75 0.00 39.31 4.84
2485 10528 2.498167 ACCTGAACATGTGAAGCAGAC 58.502 47.619 15.65 0.00 0.00 3.51
2489 10532 3.396560 TGAACATGTGAAGCAGACAGAG 58.603 45.455 0.00 0.00 0.00 3.35
2647 10690 7.355017 CGGCGTATAACAGTCTACTAAATACA 58.645 38.462 0.00 0.00 0.00 2.29
2720 10901 6.547141 CCCAATCCTTAAACAGAAGCATCATA 59.453 38.462 0.00 0.00 0.00 2.15
2744 10925 0.955428 GAGGAACATTCAGCACGGCA 60.955 55.000 0.00 0.00 0.00 5.69
2768 10949 2.654912 GGCAACCGACTGAACGACG 61.655 63.158 0.00 0.00 35.09 5.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
205 206 5.172205 CACACTACTTAAGCTTTCTCCTCC 58.828 45.833 3.20 0.00 0.00 4.30
258 259 2.175715 TGCTCTAGCTCACCTCCTATGA 59.824 50.000 3.26 0.00 42.66 2.15
368 371 1.602323 GTTCATGCCACCAACCGGA 60.602 57.895 9.46 0.00 35.59 5.14
657 661 0.035725 CCGTCCTTAAACAGGGGGAC 60.036 60.000 0.00 0.00 44.12 4.46
658 662 0.178897 TCCGTCCTTAAACAGGGGGA 60.179 55.000 0.00 0.00 44.12 4.81
659 663 0.916809 ATCCGTCCTTAAACAGGGGG 59.083 55.000 0.00 0.00 44.12 5.40
662 666 1.006832 CGCATCCGTCCTTAAACAGG 58.993 55.000 0.00 0.00 45.64 4.00
663 667 1.927174 CTCGCATCCGTCCTTAAACAG 59.073 52.381 0.00 0.00 35.54 3.16
664 668 1.546923 TCTCGCATCCGTCCTTAAACA 59.453 47.619 0.00 0.00 35.54 2.83
666 670 1.136305 CCTCTCGCATCCGTCCTTAAA 59.864 52.381 0.00 0.00 35.54 1.52
667 671 0.744874 CCTCTCGCATCCGTCCTTAA 59.255 55.000 0.00 0.00 35.54 1.85
668 672 0.106868 TCCTCTCGCATCCGTCCTTA 60.107 55.000 0.00 0.00 35.54 2.69
669 673 0.970937 TTCCTCTCGCATCCGTCCTT 60.971 55.000 0.00 0.00 35.54 3.36
670 674 0.970937 TTTCCTCTCGCATCCGTCCT 60.971 55.000 0.00 0.00 35.54 3.85
671 675 0.105039 ATTTCCTCTCGCATCCGTCC 59.895 55.000 0.00 0.00 35.54 4.79
672 676 1.941325 AATTTCCTCTCGCATCCGTC 58.059 50.000 0.00 0.00 35.54 4.79
673 677 2.009774 CAAATTTCCTCTCGCATCCGT 58.990 47.619 0.00 0.00 35.54 4.69
674 678 2.009774 ACAAATTTCCTCTCGCATCCG 58.990 47.619 0.00 0.00 0.00 4.18
675 679 2.098117 CCACAAATTTCCTCTCGCATCC 59.902 50.000 0.00 0.00 0.00 3.51
676 680 2.098117 CCCACAAATTTCCTCTCGCATC 59.902 50.000 0.00 0.00 0.00 3.91
770 6342 3.334691 TGTTTCTCCACGGCTTGATTAG 58.665 45.455 0.00 0.00 0.00 1.73
780 6352 8.548721 GGTTAAATATATGACTGTTTCTCCACG 58.451 37.037 0.00 0.00 0.00 4.94
897 6470 6.491403 ACAAGATAGACTGCTTTTGGTTGAAT 59.509 34.615 0.00 0.00 0.00 2.57
933 6506 5.346822 CACAAGATAGATTGCTTTTGGTTGC 59.653 40.000 0.00 0.00 33.28 4.17
991 6621 9.658799 ACACCTGCATACATAAAGATCATATAC 57.341 33.333 0.00 0.00 0.00 1.47
1013 6643 1.807142 GCTTTCTGTGGCTTCTACACC 59.193 52.381 0.00 0.00 38.05 4.16
1091 6727 2.042979 AGAATGGGTTATGGTTGTGGCT 59.957 45.455 0.00 0.00 0.00 4.75
1352 7025 4.707934 ACCACGGGAGAAAAAGAAAAGAAA 59.292 37.500 0.00 0.00 0.00 2.52
1353 7026 4.274978 ACCACGGGAGAAAAAGAAAAGAA 58.725 39.130 0.00 0.00 0.00 2.52
1354 7027 3.893521 ACCACGGGAGAAAAAGAAAAGA 58.106 40.909 0.00 0.00 0.00 2.52
1355 7028 4.649088 AACCACGGGAGAAAAAGAAAAG 57.351 40.909 0.00 0.00 0.00 2.27
1356 7029 4.707934 AGAAACCACGGGAGAAAAAGAAAA 59.292 37.500 0.00 0.00 0.00 2.29
1394 7067 2.027073 GCTTGGCACGATGACACGA 61.027 57.895 0.00 0.00 33.32 4.35
1395 7068 2.476051 GCTTGGCACGATGACACG 59.524 61.111 0.00 0.00 33.32 4.49
1408 7081 0.174845 TCCGGGTGATAGAACGCTTG 59.825 55.000 0.00 0.00 0.00 4.01
1533 7206 1.080501 CTCGCTGAGCAGGACGAAA 60.081 57.895 4.88 0.00 33.61 3.46
1751 7442 4.082733 GCCATTTTGTTCCTTCTACTCCAC 60.083 45.833 0.00 0.00 0.00 4.02
1759 7450 2.627699 TGTCTGGCCATTTTGTTCCTTC 59.372 45.455 5.51 0.00 0.00 3.46
1824 7515 8.354711 TGGTCCATATGAGTATGAGTATCTTC 57.645 38.462 3.65 0.00 40.12 2.87
1875 7567 9.667107 TCGTTCTCTTATTTTCATTTGGTCTAT 57.333 29.630 0.00 0.00 0.00 1.98
1900 7592 5.923684 TGATCCGTTTTGCACCTTTTAATTC 59.076 36.000 0.00 0.00 0.00 2.17
1918 7610 5.751509 TGAGTTACCGACATAAAATGATCCG 59.248 40.000 0.00 0.00 0.00 4.18
2069 7761 4.082190 TGCGCACTCTTAAGTCTCAACTAT 60.082 41.667 5.66 0.00 33.48 2.12
2131 7823 3.621268 TGTACATACGCTTCTGAAATGGC 59.379 43.478 0.00 0.00 0.00 4.40
2143 7835 0.975544 CGCGAGCTATGTACATACGC 59.024 55.000 26.91 26.91 40.91 4.42
2144 7836 2.157085 TCTCGCGAGCTATGTACATACG 59.843 50.000 30.97 14.27 0.00 3.06
2234 7928 9.643652 GCTACAGATTCTTTCAGAAAATAATCG 57.356 33.333 17.27 15.29 40.35 3.34
2303 7997 8.041323 GGAGACAACTTGTTCATAGGAAAGATA 58.959 37.037 0.00 0.00 34.13 1.98
2310 8004 4.286297 TGGGAGACAACTTGTTCATAGG 57.714 45.455 0.00 0.00 0.00 2.57
2335 8589 3.307762 GCTTGGTAGTGACATTCCCTTCT 60.308 47.826 0.00 0.00 0.00 2.85
2338 8592 1.985159 TGCTTGGTAGTGACATTCCCT 59.015 47.619 0.00 0.00 0.00 4.20
2349 8603 0.798776 CTTGGCGTCTTGCTTGGTAG 59.201 55.000 0.00 0.00 45.43 3.18
2350 8604 0.394938 TCTTGGCGTCTTGCTTGGTA 59.605 50.000 0.00 0.00 45.43 3.25
2352 8606 0.667993 TTTCTTGGCGTCTTGCTTGG 59.332 50.000 0.00 0.00 45.43 3.61
2353 8607 1.065401 TGTTTCTTGGCGTCTTGCTTG 59.935 47.619 0.00 0.00 45.43 4.01
2354 8608 1.388547 TGTTTCTTGGCGTCTTGCTT 58.611 45.000 0.00 0.00 45.43 3.91
2356 8610 2.319472 GAATGTTTCTTGGCGTCTTGC 58.681 47.619 0.00 0.00 45.38 4.01
2357 8611 2.574322 CGAATGTTTCTTGGCGTCTTG 58.426 47.619 0.00 0.00 0.00 3.02
2358 8612 1.535462 CCGAATGTTTCTTGGCGTCTT 59.465 47.619 0.00 0.00 0.00 3.01
2359 8613 1.156736 CCGAATGTTTCTTGGCGTCT 58.843 50.000 0.00 0.00 0.00 4.18
2361 8615 0.591170 CACCGAATGTTTCTTGGCGT 59.409 50.000 0.00 0.00 0.00 5.68
2362 8616 0.729140 GCACCGAATGTTTCTTGGCG 60.729 55.000 0.00 0.00 0.00 5.69
2363 8617 0.313672 TGCACCGAATGTTTCTTGGC 59.686 50.000 0.00 0.00 0.00 4.52
2364 8618 2.598589 CATGCACCGAATGTTTCTTGG 58.401 47.619 0.00 0.00 0.00 3.61
2365 8619 1.987770 GCATGCACCGAATGTTTCTTG 59.012 47.619 14.21 0.00 0.00 3.02
2366 8620 1.612950 TGCATGCACCGAATGTTTCTT 59.387 42.857 18.46 0.00 0.00 2.52
2367 8621 1.246649 TGCATGCACCGAATGTTTCT 58.753 45.000 18.46 0.00 0.00 2.52
2368 8622 2.063156 TTGCATGCACCGAATGTTTC 57.937 45.000 22.58 0.00 0.00 2.78
2369 8623 2.609350 GATTGCATGCACCGAATGTTT 58.391 42.857 22.58 0.00 0.00 2.83
2370 8624 1.467883 CGATTGCATGCACCGAATGTT 60.468 47.619 27.83 5.75 0.00 2.71
2371 8625 0.099259 CGATTGCATGCACCGAATGT 59.901 50.000 27.83 7.97 0.00 2.71
2372 8626 1.204228 GCGATTGCATGCACCGAATG 61.204 55.000 32.85 17.47 42.15 2.67
2373 8627 1.064621 GCGATTGCATGCACCGAAT 59.935 52.632 32.85 20.69 42.15 3.34
2374 8628 2.039974 AGCGATTGCATGCACCGAA 61.040 52.632 32.85 17.19 46.23 4.30
2381 10004 1.226859 CCTTGCCAGCGATTGCATG 60.227 57.895 7.90 2.74 46.23 4.06
2407 10030 2.457366 ACTCGTTCCGATGCTTCTTT 57.543 45.000 0.00 0.00 34.61 2.52
2419 10462 2.223377 AGCGTTTGGATTGAACTCGTTC 59.777 45.455 2.92 2.92 39.91 3.95
2422 10465 3.370978 ACATAGCGTTTGGATTGAACTCG 59.629 43.478 0.00 0.00 0.00 4.18
2485 10528 1.753649 TCGAATTCAGGAGAGCCTCTG 59.246 52.381 0.00 0.00 44.80 3.35
2489 10532 2.275318 CAAGTCGAATTCAGGAGAGCC 58.725 52.381 6.22 0.00 0.00 4.70
2647 10690 6.926630 AAGCCTAGCTCTATAATTGCTACT 57.073 37.500 0.00 0.00 38.25 2.57
2720 10901 4.800914 GCCGTGCTGAATGTTCCTCTATAT 60.801 45.833 0.00 0.00 0.00 0.86
2744 10925 2.418628 CGTTCAGTCGGTTGCCATTATT 59.581 45.455 0.00 0.00 0.00 1.40
2768 10949 2.125350 CTCCAGAGGCTGTTCCGC 60.125 66.667 0.00 0.00 40.77 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.