Multiple sequence alignment - TraesCS5A01G395700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G395700 chr5A 100.000 8496 0 0 1 8496 590841551 590850046 0.000000e+00 15690.0
1 TraesCS5A01G395700 chr5A 79.661 118 17 6 140 256 407931727 407931616 2.540000e-10 78.7
2 TraesCS5A01G395700 chr5D 94.485 2847 120 21 4899 7730 470042581 470045405 0.000000e+00 4353.0
3 TraesCS5A01G395700 chr5D 91.731 1415 78 21 854 2236 470038667 470040074 0.000000e+00 1929.0
4 TraesCS5A01G395700 chr5D 87.852 1597 115 40 3363 4904 470040948 470042520 0.000000e+00 1801.0
5 TraesCS5A01G395700 chr5D 95.310 661 30 1 7836 8496 470047851 470048510 0.000000e+00 1048.0
6 TraesCS5A01G395700 chr5D 89.796 833 49 14 2454 3280 470040146 470040948 0.000000e+00 1035.0
7 TraesCS5A01G395700 chr5D 91.964 448 19 4 7389 7836 470051476 470051906 5.640000e-171 612.0
8 TraesCS5A01G395700 chr5D 98.667 75 1 0 2353 2427 470040078 470040152 5.350000e-27 134.0
9 TraesCS5A01G395700 chr5D 88.298 94 6 4 2285 2376 390593892 390593802 3.240000e-19 108.0
10 TraesCS5A01G395700 chr5D 84.884 86 12 1 348 432 327987625 327987710 1.520000e-12 86.1
11 TraesCS5A01G395700 chr5B 96.163 2111 68 6 5394 7496 577520588 577522693 0.000000e+00 3437.0
12 TraesCS5A01G395700 chr5B 95.030 2012 72 17 3414 5410 577518415 577520413 0.000000e+00 3136.0
13 TraesCS5A01G395700 chr5B 90.397 1385 92 15 303 1660 577514679 577516049 0.000000e+00 1783.0
14 TraesCS5A01G395700 chr5B 93.393 666 40 4 7834 8496 577523526 577524190 0.000000e+00 983.0
15 TraesCS5A01G395700 chr5B 95.581 611 26 1 1653 2262 577516211 577516821 0.000000e+00 977.0
16 TraesCS5A01G395700 chr5B 94.697 528 25 3 2353 2879 577516925 577517450 0.000000e+00 817.0
17 TraesCS5A01G395700 chr5B 95.363 496 19 2 2921 3412 577517444 577517939 0.000000e+00 785.0
18 TraesCS5A01G395700 chr5B 95.113 266 8 4 7484 7748 577522819 577523080 1.710000e-111 414.0
19 TraesCS5A01G395700 chr5B 94.762 210 7 3 7522 7730 577528577 577528783 2.960000e-84 324.0
20 TraesCS5A01G395700 chr5B 76.733 202 31 14 3080 3269 671718235 671718432 1.950000e-16 99.0
21 TraesCS5A01G395700 chr4B 89.256 1303 99 15 5367 6659 211589027 211590298 0.000000e+00 1592.0
22 TraesCS5A01G395700 chr4B 98.039 51 1 0 2238 2288 384838546 384838496 1.170000e-13 89.8
23 TraesCS5A01G395700 chr7A 98.571 140 2 0 1 140 401171693 401171554 1.830000e-61 248.0
24 TraesCS5A01G395700 chr7A 97.857 140 3 0 1 140 580191302 580191163 8.520000e-60 243.0
25 TraesCS5A01G395700 chr7A 95.946 148 6 0 1 148 439269388 439269241 3.060000e-59 241.0
26 TraesCS5A01G395700 chr7A 80.380 158 18 6 140 296 209585071 209585216 3.240000e-19 108.0
27 TraesCS5A01G395700 chr1A 97.887 142 3 0 1 142 434798270 434798129 6.590000e-61 246.0
28 TraesCS5A01G395700 chrUn 96.575 146 5 0 1 146 46955370 46955225 8.520000e-60 243.0
29 TraesCS5A01G395700 chrUn 98.485 66 1 0 2285 2350 682352 682287 5.390000e-22 117.0
30 TraesCS5A01G395700 chrUn 98.485 66 1 0 2285 2350 243044975 243044910 5.390000e-22 117.0
31 TraesCS5A01G395700 chr4A 97.857 140 3 0 1 140 393717167 393717306 8.520000e-60 243.0
32 TraesCS5A01G395700 chr3A 97.857 140 3 0 1 140 78208775 78208636 8.520000e-60 243.0
33 TraesCS5A01G395700 chr3A 97.857 140 3 0 1 140 241063235 241063374 8.520000e-60 243.0
34 TraesCS5A01G395700 chr3A 95.302 149 5 2 1 148 295127811 295127664 1.430000e-57 235.0
35 TraesCS5A01G395700 chr3A 94.521 73 4 0 2285 2357 290430938 290430866 6.970000e-21 113.0
36 TraesCS5A01G395700 chr6D 80.139 287 36 12 7096 7376 431161223 431161494 2.420000e-45 195.0
37 TraesCS5A01G395700 chr6D 81.325 166 13 9 142 296 242998332 242998490 1.500000e-22 119.0
38 TraesCS5A01G395700 chr6D 98.485 66 1 0 2285 2350 126434297 126434232 5.390000e-22 117.0
39 TraesCS5A01G395700 chr6D 98.485 66 1 0 2285 2350 296696700 296696765 5.390000e-22 117.0
40 TraesCS5A01G395700 chr6D 98.485 66 1 0 2285 2350 372827599 372827534 5.390000e-22 117.0
41 TraesCS5A01G395700 chr6D 98.485 66 1 0 2285 2350 401143253 401143188 5.390000e-22 117.0
42 TraesCS5A01G395700 chr6D 98.039 51 1 0 2238 2288 160204765 160204715 1.170000e-13 89.8
43 TraesCS5A01G395700 chr6A 78.231 294 44 14 7096 7384 577845071 577845349 4.080000e-38 171.0
44 TraesCS5A01G395700 chr6A 98.039 51 1 0 2238 2288 153353004 153352954 1.170000e-13 89.8
45 TraesCS5A01G395700 chr6A 98.039 51 1 0 2238 2288 531029754 531029704 1.170000e-13 89.8
46 TraesCS5A01G395700 chr1B 83.660 153 18 4 140 292 564301994 564301849 4.140000e-28 137.0
47 TraesCS5A01G395700 chr7D 82.895 152 10 10 152 292 531652895 531652749 1.160000e-23 122.0
48 TraesCS5A01G395700 chr2B 97.101 69 2 0 2285 2353 383252602 383252534 5.390000e-22 117.0
49 TraesCS5A01G395700 chr3B 73.112 331 60 21 2981 3309 652918472 652918169 3.270000e-14 91.6
50 TraesCS5A01G395700 chr4D 98.039 51 1 0 2238 2288 164880231 164880281 1.170000e-13 89.8
51 TraesCS5A01G395700 chr4D 98.039 51 1 0 2238 2288 206064769 206064819 1.170000e-13 89.8
52 TraesCS5A01G395700 chr4D 98.039 51 1 0 2238 2288 215458594 215458544 1.170000e-13 89.8
53 TraesCS5A01G395700 chr4D 98.039 51 1 0 2238 2288 372529172 372529222 1.170000e-13 89.8
54 TraesCS5A01G395700 chr1D 98.039 51 1 0 2238 2288 423306819 423306769 1.170000e-13 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G395700 chr5A 590841551 590850046 8495 False 15690.000000 15690 100.000000 1 8496 1 chr5A.!!$F1 8495
1 TraesCS5A01G395700 chr5D 470038667 470051906 13239 False 1558.857143 4353 92.829286 854 8496 7 chr5D.!!$F2 7642
2 TraesCS5A01G395700 chr5B 577514679 577524190 9511 False 1541.500000 3437 94.467125 303 8496 8 chr5B.!!$F3 8193
3 TraesCS5A01G395700 chr4B 211589027 211590298 1271 False 1592.000000 1592 89.256000 5367 6659 1 chr4B.!!$F1 1292

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.033504 ACAAAGGAGCACGACGACAT 59.966 50.0 0.00 0.00 0.00 3.06 F
156 157 0.439985 CAAAGGAGCACGACGACATG 59.560 55.0 0.00 0.00 0.00 3.21 F
742 751 0.611200 TGATCCGTTTGTCATCCCGT 59.389 50.0 0.00 0.00 0.00 5.28 F
1880 2081 0.385390 CTATTTTGATGGGGGCGCAC 59.615 55.0 10.83 4.83 0.00 5.34 F
2280 2492 0.035439 AGTTGGGGTAGCACCGATTG 60.035 55.0 0.00 0.00 39.83 2.67 F
2281 2493 0.035820 GTTGGGGTAGCACCGATTGA 60.036 55.0 0.00 0.00 39.83 2.57 F
3658 4441 0.168128 GTTTATGGCCGTGCACTGAC 59.832 55.0 16.19 11.79 0.00 3.51 F
4851 5669 0.470341 CCCTAGCCTTAGTCTTGGGC 59.530 60.0 0.00 7.45 45.57 5.36 F
5520 6596 3.594134 GCTATCATCTGGTATGGCACTC 58.406 50.0 0.00 0.00 30.64 3.51 F
6570 7651 1.330234 TGTTGCTGCATGTTCCATGT 58.670 45.0 1.84 0.00 0.00 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1458 1487 0.254178 ACTGCCTAGCATGACTTGGG 59.746 55.000 15.32 10.16 41.20 4.12 R
1554 1585 4.019792 TGACATGGTTACTCTGCACAAT 57.980 40.909 0.00 0.00 0.00 2.71 R
2261 2473 0.035439 CAATCGGTGCTACCCCAACT 60.035 55.000 0.00 0.00 33.75 3.16 R
2832 3083 0.039256 GCAGCGCATCAAAACTTCCA 60.039 50.000 11.47 0.00 0.00 3.53 R
3280 3561 0.178935 GGCTAGGGAGAGGCTCTCAT 60.179 60.000 37.55 28.85 45.12 2.90 R
3685 4468 0.833287 TCATCTTGAGGTGGGCTAGC 59.167 55.000 6.04 6.04 0.00 3.42 R
5047 5931 1.271163 TGAGGAAAAACTGTAGGCCCG 60.271 52.381 0.00 0.00 0.00 6.13 R
5942 7020 0.107703 TTCCTTGGTCCATAGCAGCG 60.108 55.000 0.00 0.00 33.93 5.18 R
7158 8245 0.106918 ACCAGGCAAGTTTCCGTTCA 60.107 50.000 0.00 0.00 0.00 3.18 R
7787 9431 0.320421 TCACTACCAAGCAAGACGCC 60.320 55.000 0.00 0.00 44.04 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.345737 TCGGATGCATGAGACGAAC 57.654 52.632 2.46 0.00 0.00 3.95
19 20 0.530288 TCGGATGCATGAGACGAACA 59.470 50.000 2.46 0.00 0.00 3.18
20 21 1.136891 TCGGATGCATGAGACGAACAT 59.863 47.619 2.46 0.00 0.00 2.71
21 22 1.259770 CGGATGCATGAGACGAACATG 59.740 52.381 2.46 13.48 45.19 3.21
22 23 2.283298 GGATGCATGAGACGAACATGT 58.717 47.619 2.46 0.00 44.52 3.21
23 24 3.457234 GGATGCATGAGACGAACATGTA 58.543 45.455 2.46 14.45 44.52 2.29
25 26 4.084171 GGATGCATGAGACGAACATGTATG 60.084 45.833 20.41 0.00 45.61 2.39
26 27 2.609002 TGCATGAGACGAACATGTATGC 59.391 45.455 16.89 16.89 44.52 3.14
27 28 2.609002 GCATGAGACGAACATGTATGCA 59.391 45.455 18.22 0.00 44.52 3.96
28 29 3.063861 GCATGAGACGAACATGTATGCAA 59.936 43.478 18.22 0.00 44.52 4.08
29 30 4.437255 GCATGAGACGAACATGTATGCAAA 60.437 41.667 18.22 0.00 44.52 3.68
30 31 5.731406 GCATGAGACGAACATGTATGCAAAT 60.731 40.000 18.22 0.00 44.52 2.32
31 32 5.220557 TGAGACGAACATGTATGCAAATG 57.779 39.130 0.00 0.00 0.00 2.32
32 33 4.934602 TGAGACGAACATGTATGCAAATGA 59.065 37.500 12.73 0.00 0.00 2.57
33 34 5.411053 TGAGACGAACATGTATGCAAATGAA 59.589 36.000 12.73 0.00 0.00 2.57
34 35 6.072783 TGAGACGAACATGTATGCAAATGAAA 60.073 34.615 12.73 0.00 0.00 2.69
35 36 6.855836 AGACGAACATGTATGCAAATGAAAT 58.144 32.000 12.73 1.41 0.00 2.17
36 37 6.748658 AGACGAACATGTATGCAAATGAAATG 59.251 34.615 12.73 3.01 0.00 2.32
37 38 5.289193 ACGAACATGTATGCAAATGAAATGC 59.711 36.000 12.73 0.00 44.08 3.56
48 49 6.650239 GCAAATGAAATGCACATGATAACA 57.350 33.333 0.00 0.00 43.29 2.41
49 50 7.241663 GCAAATGAAATGCACATGATAACAT 57.758 32.000 0.00 0.00 43.29 2.71
50 51 7.123190 GCAAATGAAATGCACATGATAACATG 58.877 34.615 11.14 11.14 44.71 3.21
51 52 7.010645 GCAAATGAAATGCACATGATAACATGA 59.989 33.333 18.79 0.00 46.99 3.07
65 66 8.817092 ATGATAACATGATATGGAATGCATGA 57.183 30.769 0.00 0.00 40.58 3.07
66 67 8.047413 TGATAACATGATATGGAATGCATGAC 57.953 34.615 0.00 0.00 40.58 3.06
67 68 7.666388 TGATAACATGATATGGAATGCATGACA 59.334 33.333 0.00 2.52 40.58 3.58
68 69 5.700722 ACATGATATGGAATGCATGACAC 57.299 39.130 0.00 0.00 40.58 3.67
69 70 4.214758 ACATGATATGGAATGCATGACACG 59.785 41.667 0.00 0.00 40.58 4.49
70 71 2.549329 TGATATGGAATGCATGACACGC 59.451 45.455 0.00 0.00 0.00 5.34
71 72 2.035530 TATGGAATGCATGACACGCA 57.964 45.000 0.00 0.00 44.94 5.24
72 73 1.175654 ATGGAATGCATGACACGCAA 58.824 45.000 0.00 0.00 43.84 4.85
73 74 0.522626 TGGAATGCATGACACGCAAG 59.477 50.000 0.00 0.00 43.84 4.01
74 75 0.799534 GGAATGCATGACACGCAAGC 60.800 55.000 0.00 0.00 43.84 4.01
76 77 3.429925 TGCATGACACGCAAGCAA 58.570 50.000 0.00 0.00 46.97 3.91
77 78 1.958323 TGCATGACACGCAAGCAAT 59.042 47.368 0.00 0.00 46.97 3.56
78 79 0.387494 TGCATGACACGCAAGCAATG 60.387 50.000 0.00 0.00 46.97 2.82
79 80 0.109643 GCATGACACGCAAGCAATGA 60.110 50.000 0.00 0.00 40.75 2.57
80 81 1.609932 CATGACACGCAAGCAATGAC 58.390 50.000 0.00 0.00 45.62 3.06
81 82 1.069091 CATGACACGCAAGCAATGACA 60.069 47.619 0.00 1.58 45.62 3.58
82 83 1.020437 TGACACGCAAGCAATGACAA 58.980 45.000 0.84 0.00 45.62 3.18
83 84 1.002576 TGACACGCAAGCAATGACAAG 60.003 47.619 0.84 0.00 45.62 3.16
84 85 0.311790 ACACGCAAGCAATGACAAGG 59.688 50.000 0.84 0.00 45.62 3.61
85 86 1.005294 CACGCAAGCAATGACAAGGC 61.005 55.000 0.00 0.00 45.62 4.35
86 87 1.286570 CGCAAGCAATGACAAGGCA 59.713 52.632 4.75 0.00 0.00 4.75
87 88 0.318869 CGCAAGCAATGACAAGGCAA 60.319 50.000 4.75 0.00 0.00 4.52
88 89 1.142474 GCAAGCAATGACAAGGCAAC 58.858 50.000 4.75 0.00 0.00 4.17
89 90 1.538634 GCAAGCAATGACAAGGCAACA 60.539 47.619 4.75 0.00 41.41 3.33
90 91 2.823984 CAAGCAATGACAAGGCAACAA 58.176 42.857 4.75 0.00 41.41 2.83
91 92 2.514205 AGCAATGACAAGGCAACAAC 57.486 45.000 4.75 0.00 41.41 3.32
92 93 1.755959 AGCAATGACAAGGCAACAACA 59.244 42.857 4.75 0.00 41.41 3.33
93 94 2.168106 AGCAATGACAAGGCAACAACAA 59.832 40.909 4.75 0.00 41.41 2.83
94 95 2.284952 GCAATGACAAGGCAACAACAAC 59.715 45.455 0.00 0.00 41.41 3.32
95 96 2.490328 ATGACAAGGCAACAACAACG 57.510 45.000 0.00 0.00 41.41 4.10
96 97 1.454201 TGACAAGGCAACAACAACGA 58.546 45.000 0.00 0.00 41.41 3.85
97 98 1.813178 TGACAAGGCAACAACAACGAA 59.187 42.857 0.00 0.00 41.41 3.85
98 99 2.425312 TGACAAGGCAACAACAACGAAT 59.575 40.909 0.00 0.00 41.41 3.34
99 100 3.628032 TGACAAGGCAACAACAACGAATA 59.372 39.130 0.00 0.00 41.41 1.75
100 101 4.096532 TGACAAGGCAACAACAACGAATAA 59.903 37.500 0.00 0.00 41.41 1.40
101 102 4.356289 ACAAGGCAACAACAACGAATAAC 58.644 39.130 0.00 0.00 41.41 1.89
102 103 4.097286 ACAAGGCAACAACAACGAATAACT 59.903 37.500 0.00 0.00 41.41 2.24
103 104 4.223320 AGGCAACAACAACGAATAACTG 57.777 40.909 0.00 0.00 41.41 3.16
104 105 3.004315 AGGCAACAACAACGAATAACTGG 59.996 43.478 0.00 0.00 41.41 4.00
105 106 3.003897 GGCAACAACAACGAATAACTGGA 59.996 43.478 0.00 0.00 0.00 3.86
106 107 4.219033 GCAACAACAACGAATAACTGGAG 58.781 43.478 0.00 0.00 0.00 3.86
107 108 4.783242 CAACAACAACGAATAACTGGAGG 58.217 43.478 0.00 0.00 0.00 4.30
108 109 4.345859 ACAACAACGAATAACTGGAGGA 57.654 40.909 0.00 0.00 0.00 3.71
109 110 4.062991 ACAACAACGAATAACTGGAGGAC 58.937 43.478 0.00 0.00 0.00 3.85
110 111 4.062293 CAACAACGAATAACTGGAGGACA 58.938 43.478 0.00 0.00 0.00 4.02
111 112 3.660865 ACAACGAATAACTGGAGGACAC 58.339 45.455 0.00 0.00 0.00 3.67
112 113 3.000727 CAACGAATAACTGGAGGACACC 58.999 50.000 0.00 0.00 0.00 4.16
113 114 1.553704 ACGAATAACTGGAGGACACCC 59.446 52.381 0.00 0.00 0.00 4.61
114 115 1.470979 CGAATAACTGGAGGACACCCG 60.471 57.143 0.00 0.00 37.58 5.28
115 116 0.909623 AATAACTGGAGGACACCCGG 59.090 55.000 0.00 0.00 37.58 5.73
116 117 1.623542 ATAACTGGAGGACACCCGGC 61.624 60.000 0.00 0.00 37.58 6.13
117 118 4.954118 ACTGGAGGACACCCGGCA 62.954 66.667 0.00 0.00 37.58 5.69
118 119 4.394712 CTGGAGGACACCCGGCAC 62.395 72.222 0.00 0.00 37.58 5.01
120 121 3.717294 GGAGGACACCCGGCACAT 61.717 66.667 0.00 0.00 37.58 3.21
121 122 2.125106 GAGGACACCCGGCACATC 60.125 66.667 0.00 0.00 37.58 3.06
122 123 4.082523 AGGACACCCGGCACATCG 62.083 66.667 0.00 0.00 37.58 3.84
129 130 4.873129 CCGGCACATCGGTCTCGG 62.873 72.222 0.00 0.00 44.60 4.63
130 131 4.873129 CGGCACATCGGTCTCGGG 62.873 72.222 0.00 0.00 36.95 5.14
131 132 4.530857 GGCACATCGGTCTCGGGG 62.531 72.222 0.00 0.00 36.95 5.73
133 134 4.873129 CACATCGGTCTCGGGGCG 62.873 72.222 0.00 0.00 36.95 6.13
135 136 4.143333 CATCGGTCTCGGGGCGTT 62.143 66.667 0.00 0.00 36.95 4.84
136 137 2.440796 ATCGGTCTCGGGGCGTTA 60.441 61.111 0.00 0.00 36.95 3.18
137 138 2.779033 ATCGGTCTCGGGGCGTTAC 61.779 63.158 0.00 0.00 36.95 2.50
138 139 3.751246 CGGTCTCGGGGCGTTACA 61.751 66.667 0.00 0.00 0.00 2.41
139 140 2.658422 GGTCTCGGGGCGTTACAA 59.342 61.111 0.00 0.00 0.00 2.41
140 141 1.004679 GGTCTCGGGGCGTTACAAA 60.005 57.895 0.00 0.00 0.00 2.83
141 142 1.017701 GGTCTCGGGGCGTTACAAAG 61.018 60.000 0.00 0.00 0.00 2.77
142 143 1.017701 GTCTCGGGGCGTTACAAAGG 61.018 60.000 0.00 0.00 0.00 3.11
143 144 1.186917 TCTCGGGGCGTTACAAAGGA 61.187 55.000 0.00 0.00 0.00 3.36
144 145 0.739813 CTCGGGGCGTTACAAAGGAG 60.740 60.000 0.00 0.00 0.00 3.69
145 146 2.396157 CGGGGCGTTACAAAGGAGC 61.396 63.158 0.00 0.00 0.00 4.70
146 147 1.302993 GGGGCGTTACAAAGGAGCA 60.303 57.895 0.00 0.00 0.00 4.26
147 148 1.583495 GGGGCGTTACAAAGGAGCAC 61.583 60.000 0.00 0.00 0.00 4.40
148 149 1.495951 GGCGTTACAAAGGAGCACG 59.504 57.895 0.00 0.00 0.00 5.34
149 150 0.947180 GGCGTTACAAAGGAGCACGA 60.947 55.000 0.00 0.00 32.51 4.35
150 151 0.163146 GCGTTACAAAGGAGCACGAC 59.837 55.000 0.00 0.00 32.51 4.34
151 152 0.433492 CGTTACAAAGGAGCACGACG 59.567 55.000 0.00 0.00 32.51 5.12
152 153 1.774639 GTTACAAAGGAGCACGACGA 58.225 50.000 0.00 0.00 0.00 4.20
153 154 1.454653 GTTACAAAGGAGCACGACGAC 59.545 52.381 0.00 0.00 0.00 4.34
154 155 0.669619 TACAAAGGAGCACGACGACA 59.330 50.000 0.00 0.00 0.00 4.35
155 156 0.033504 ACAAAGGAGCACGACGACAT 59.966 50.000 0.00 0.00 0.00 3.06
156 157 0.439985 CAAAGGAGCACGACGACATG 59.560 55.000 0.00 0.00 0.00 3.21
157 158 0.670546 AAAGGAGCACGACGACATGG 60.671 55.000 0.00 0.00 0.00 3.66
158 159 1.816863 AAGGAGCACGACGACATGGT 61.817 55.000 0.00 0.00 0.00 3.55
159 160 1.805945 GGAGCACGACGACATGGTC 60.806 63.158 0.00 4.65 41.56 4.02
168 169 3.474806 GACATGGTCGCCGACAAG 58.525 61.111 20.08 10.19 33.68 3.16
169 170 2.047274 ACATGGTCGCCGACAAGG 60.047 61.111 20.08 12.63 44.97 3.61
170 171 2.264480 CATGGTCGCCGACAAGGA 59.736 61.111 20.08 0.00 45.00 3.36
171 172 1.811266 CATGGTCGCCGACAAGGAG 60.811 63.158 20.08 0.00 45.00 3.69
172 173 3.019003 ATGGTCGCCGACAAGGAGG 62.019 63.158 20.08 0.00 45.00 4.30
210 211 2.202623 GGCGACTACGTCCAGCTG 60.203 66.667 6.78 6.78 41.98 4.24
211 212 2.202623 GCGACTACGTCCAGCTGG 60.203 66.667 27.87 27.87 41.98 4.85
212 213 2.697761 GCGACTACGTCCAGCTGGA 61.698 63.158 32.00 32.00 41.98 3.86
213 214 1.429825 CGACTACGTCCAGCTGGAG 59.570 63.158 35.92 28.18 46.49 3.86
214 215 1.139947 GACTACGTCCAGCTGGAGC 59.860 63.158 35.92 26.25 46.49 4.70
215 216 2.103143 CTACGTCCAGCTGGAGCG 59.897 66.667 35.46 35.46 46.49 5.03
216 217 4.129737 TACGTCCAGCTGGAGCGC 62.130 66.667 36.29 26.09 46.49 5.92
258 259 3.217017 TCGAAGAGATCCCCGCGG 61.217 66.667 21.04 21.04 0.00 6.46
259 260 4.951963 CGAAGAGATCCCCGCGGC 62.952 72.222 22.85 5.89 0.00 6.53
260 261 4.610714 GAAGAGATCCCCGCGGCC 62.611 72.222 22.85 8.36 0.00 6.13
280 281 3.900892 ACGAGGGCGGCGTCATAG 61.901 66.667 27.84 9.79 43.17 2.23
281 282 3.900892 CGAGGGCGGCGTCATAGT 61.901 66.667 27.84 0.00 0.00 2.12
282 283 2.027751 GAGGGCGGCGTCATAGTC 59.972 66.667 24.67 0.00 0.00 2.59
283 284 3.501458 GAGGGCGGCGTCATAGTCC 62.501 68.421 24.67 0.55 0.00 3.85
284 285 3.537874 GGGCGGCGTCATAGTCCT 61.538 66.667 15.59 0.00 0.00 3.85
285 286 2.027751 GGCGGCGTCATAGTCCTC 59.972 66.667 6.63 0.00 0.00 3.71
286 287 2.353607 GCGGCGTCATAGTCCTCG 60.354 66.667 9.37 0.00 0.00 4.63
287 288 2.831366 GCGGCGTCATAGTCCTCGA 61.831 63.158 9.37 0.00 0.00 4.04
288 289 1.280142 CGGCGTCATAGTCCTCGAG 59.720 63.158 5.13 5.13 0.00 4.04
289 290 1.655329 GGCGTCATAGTCCTCGAGG 59.345 63.158 26.32 26.32 0.00 4.63
290 291 0.818445 GGCGTCATAGTCCTCGAGGA 60.818 60.000 30.49 30.49 43.08 3.71
341 342 2.352960 GTCTTCACCGCATCTTTGATCC 59.647 50.000 0.00 0.00 0.00 3.36
342 343 1.328680 CTTCACCGCATCTTTGATCCG 59.671 52.381 0.00 0.00 0.00 4.18
384 385 2.637025 GAGCGCGCTTGGTTCAAA 59.363 55.556 36.87 0.00 0.00 2.69
396 397 1.039856 GGTTCAAAGCAAAGGAGGCA 58.960 50.000 0.00 0.00 0.00 4.75
439 440 4.651008 GGTGCGGGTGTCGACGAA 62.651 66.667 11.62 0.00 42.43 3.85
461 462 3.900855 GAGGAGTACGACCTCGCA 58.099 61.111 20.35 0.00 43.25 5.10
482 483 1.302033 CGTGCTCTGCAACTCCCTT 60.302 57.895 0.00 0.00 41.47 3.95
483 484 1.572085 CGTGCTCTGCAACTCCCTTG 61.572 60.000 0.00 0.00 41.47 3.61
485 486 1.055849 TGCTCTGCAACTCCCTTGTA 58.944 50.000 0.00 0.00 34.76 2.41
487 488 1.002544 GCTCTGCAACTCCCTTGTAGT 59.997 52.381 0.00 0.00 41.90 2.73
500 501 2.434359 GTAGTGCACCACCTCGGC 60.434 66.667 14.63 0.00 39.03 5.54
501 502 2.920384 TAGTGCACCACCTCGGCA 60.920 61.111 14.63 0.00 39.03 5.69
511 512 2.361610 CCTCGGCATGGGCAAGTT 60.362 61.111 0.00 0.00 43.71 2.66
512 513 1.077787 CCTCGGCATGGGCAAGTTA 60.078 57.895 0.00 0.00 43.71 2.24
535 536 3.744719 CGGCTCCGGTGAAGACGA 61.745 66.667 11.32 0.00 35.56 4.20
543 544 1.811359 CCGGTGAAGACGAGTAGAACT 59.189 52.381 0.00 0.00 0.00 3.01
545 546 2.159544 CGGTGAAGACGAGTAGAACTCC 60.160 54.545 1.63 0.00 42.12 3.85
548 549 0.810016 AAGACGAGTAGAACTCCGGC 59.190 55.000 0.00 0.09 42.12 6.13
565 566 4.178540 TCCGGCGATCTAGTTTAAGTTTG 58.821 43.478 9.30 0.00 0.00 2.93
571 578 7.595502 CGGCGATCTAGTTTAAGTTTGATATCT 59.404 37.037 0.00 0.00 0.00 1.98
623 630 1.086696 GCAAGTGGCGTGATATGTGT 58.913 50.000 0.00 0.00 0.00 3.72
628 635 1.665679 GTGGCGTGATATGTGTGGAAG 59.334 52.381 0.00 0.00 0.00 3.46
644 651 7.367285 TGTGTGGAAGTATGTTTAATTTGCTC 58.633 34.615 0.00 0.00 0.00 4.26
646 653 5.511729 GTGGAAGTATGTTTAATTTGCTCGC 59.488 40.000 0.00 0.00 0.00 5.03
650 657 6.435430 AGTATGTTTAATTTGCTCGCATGA 57.565 33.333 0.00 0.00 0.00 3.07
660 667 2.009051 TGCTCGCATGAACTATGTTGG 58.991 47.619 0.00 0.00 39.08 3.77
664 671 1.529622 CGCATGAACTATGTTGGCGTG 60.530 52.381 0.00 0.00 39.08 5.34
677 684 8.036575 ACTATGTTGGCGTGAACTATTAGTTTA 58.963 33.333 10.32 3.86 38.80 2.01
683 690 9.615295 TTGGCGTGAACTATTAGTTTAAAAATC 57.385 29.630 10.32 0.00 38.80 2.17
708 717 4.748600 AGTAAGAACTTGGACGCTGTTTAC 59.251 41.667 0.00 0.00 29.00 2.01
709 718 3.470645 AGAACTTGGACGCTGTTTACT 57.529 42.857 0.00 0.00 0.00 2.24
722 731 7.064253 GGACGCTGTTTACTAGATGTATTTTGT 59.936 37.037 0.00 0.00 0.00 2.83
740 749 2.432444 TGTTGATCCGTTTGTCATCCC 58.568 47.619 0.00 0.00 0.00 3.85
742 751 0.611200 TGATCCGTTTGTCATCCCGT 59.389 50.000 0.00 0.00 0.00 5.28
745 754 2.835580 TCCGTTTGTCATCCCGTAAA 57.164 45.000 0.00 0.00 0.00 2.01
746 755 3.337694 TCCGTTTGTCATCCCGTAAAT 57.662 42.857 0.00 0.00 0.00 1.40
747 756 3.677190 TCCGTTTGTCATCCCGTAAATT 58.323 40.909 0.00 0.00 0.00 1.82
748 757 4.073549 TCCGTTTGTCATCCCGTAAATTT 58.926 39.130 0.00 0.00 0.00 1.82
749 758 4.519730 TCCGTTTGTCATCCCGTAAATTTT 59.480 37.500 0.00 0.00 0.00 1.82
750 759 5.704515 TCCGTTTGTCATCCCGTAAATTTTA 59.295 36.000 0.00 0.00 0.00 1.52
751 760 6.374894 TCCGTTTGTCATCCCGTAAATTTTAT 59.625 34.615 0.00 0.00 0.00 1.40
752 761 7.030768 CCGTTTGTCATCCCGTAAATTTTATT 58.969 34.615 0.00 0.00 0.00 1.40
753 762 7.542824 CCGTTTGTCATCCCGTAAATTTTATTT 59.457 33.333 0.00 0.00 0.00 1.40
834 843 6.712095 TGCAAGAGACAGATAAAAACAGACAT 59.288 34.615 0.00 0.00 0.00 3.06
839 849 7.551974 AGAGACAGATAAAAACAGACATGATGG 59.448 37.037 0.00 0.00 0.00 3.51
866 879 1.729586 TGGGTCCTGTTAGAGTTGCT 58.270 50.000 0.00 0.00 0.00 3.91
904 917 4.916249 CACGTCAGTAAGTTGAAGGACTAC 59.084 45.833 0.00 0.00 31.92 2.73
1054 1083 3.638860 TCTAGAACCCTAGAATCGCCAA 58.361 45.455 0.00 0.00 46.09 4.52
1122 1151 1.407258 AGCCTTAGATCTCGACTGCAC 59.593 52.381 0.00 0.00 0.00 4.57
1342 1371 5.432157 GTCAGTAATAAATGCCGTCGATTG 58.568 41.667 0.00 0.00 0.00 2.67
1346 1375 1.658994 TAAATGCCGTCGATTGGGTC 58.341 50.000 8.53 0.00 0.00 4.46
1348 1377 0.744414 AATGCCGTCGATTGGGTCTG 60.744 55.000 8.53 0.00 0.00 3.51
1393 1422 0.621609 CTGGATTGGGACGGGGTAAA 59.378 55.000 0.00 0.00 0.00 2.01
1458 1487 2.473235 GCTAATTCGACCTTCATCTCGC 59.527 50.000 0.00 0.00 0.00 5.03
1880 2081 0.385390 CTATTTTGATGGGGGCGCAC 59.615 55.000 10.83 4.83 0.00 5.34
1985 2186 2.937379 ATCTGATGCCAGCTGGTCGC 62.937 60.000 32.81 21.44 40.20 5.19
2039 2240 7.561021 TGTTTGTTTGTATGTGCTTTAGAGA 57.439 32.000 0.00 0.00 0.00 3.10
2061 2262 7.935755 AGAGAATGATGGTGTTATATGAACTGG 59.064 37.037 0.00 0.00 0.00 4.00
2208 2420 1.895798 AGTCCTCGTTCTCTGCATTCA 59.104 47.619 0.00 0.00 0.00 2.57
2236 2448 8.934507 TTCATTGTTTTTACCACTTTACCTTG 57.065 30.769 0.00 0.00 0.00 3.61
2243 2455 1.074889 ACCACTTTACCTTGCCGGAAT 59.925 47.619 5.05 0.00 36.31 3.01
2259 2471 4.380550 GCCGGAATGATGACATACGAGATA 60.381 45.833 5.05 0.00 38.41 1.98
2260 2472 5.335935 CCGGAATGATGACATACGAGATAG 58.664 45.833 0.00 0.00 38.41 2.08
2261 2473 5.123979 CCGGAATGATGACATACGAGATAGA 59.876 44.000 0.00 0.00 38.41 1.98
2262 2474 6.254480 CGGAATGATGACATACGAGATAGAG 58.746 44.000 0.00 0.00 38.41 2.43
2263 2475 6.128145 CGGAATGATGACATACGAGATAGAGT 60.128 42.308 0.00 0.00 38.41 3.24
2264 2476 7.574030 CGGAATGATGACATACGAGATAGAGTT 60.574 40.741 0.00 0.00 38.41 3.01
2265 2477 7.540400 GGAATGATGACATACGAGATAGAGTTG 59.460 40.741 0.00 0.00 35.50 3.16
2266 2478 6.319141 TGATGACATACGAGATAGAGTTGG 57.681 41.667 0.00 0.00 0.00 3.77
2267 2479 5.241728 TGATGACATACGAGATAGAGTTGGG 59.758 44.000 0.00 0.00 0.00 4.12
2268 2480 3.889538 TGACATACGAGATAGAGTTGGGG 59.110 47.826 0.00 0.00 0.00 4.96
2269 2481 3.890147 GACATACGAGATAGAGTTGGGGT 59.110 47.826 0.00 0.00 0.00 4.95
2270 2482 5.057843 ACATACGAGATAGAGTTGGGGTA 57.942 43.478 0.00 0.00 0.00 3.69
2271 2483 5.071370 ACATACGAGATAGAGTTGGGGTAG 58.929 45.833 0.00 0.00 0.00 3.18
2272 2484 2.308690 ACGAGATAGAGTTGGGGTAGC 58.691 52.381 0.00 0.00 0.00 3.58
2273 2485 2.307768 CGAGATAGAGTTGGGGTAGCA 58.692 52.381 0.00 0.00 0.00 3.49
2274 2486 2.034812 CGAGATAGAGTTGGGGTAGCAC 59.965 54.545 0.00 0.00 0.00 4.40
2275 2487 2.365941 GAGATAGAGTTGGGGTAGCACC 59.634 54.545 0.00 0.00 37.60 5.01
2276 2488 1.068741 GATAGAGTTGGGGTAGCACCG 59.931 57.143 0.00 0.00 39.83 4.94
2277 2489 0.040058 TAGAGTTGGGGTAGCACCGA 59.960 55.000 0.00 0.00 39.83 4.69
2278 2490 0.617820 AGAGTTGGGGTAGCACCGAT 60.618 55.000 0.00 0.00 39.83 4.18
2279 2491 0.252197 GAGTTGGGGTAGCACCGATT 59.748 55.000 0.00 0.00 39.83 3.34
2280 2492 0.035439 AGTTGGGGTAGCACCGATTG 60.035 55.000 0.00 0.00 39.83 2.67
2281 2493 0.035820 GTTGGGGTAGCACCGATTGA 60.036 55.000 0.00 0.00 39.83 2.57
2282 2494 0.693622 TTGGGGTAGCACCGATTGAA 59.306 50.000 0.00 0.00 39.83 2.69
2283 2495 0.251916 TGGGGTAGCACCGATTGAAG 59.748 55.000 0.00 0.00 39.83 3.02
2309 2521 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
2319 2531 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
2335 2547 2.468915 GTTTCACCTCTAGCCTACCCT 58.531 52.381 0.00 0.00 0.00 4.34
2350 2562 3.073356 CCTACCCTAACTTGTTTGGGACA 59.927 47.826 29.81 19.11 42.11 4.02
2647 2898 5.662657 TCCTGAGGTGATTGACTATCATTGA 59.337 40.000 0.00 0.00 44.75 2.57
2778 3029 6.470235 CAGCTAATAATTCTTTGCCTTGTTCG 59.530 38.462 6.42 0.00 0.00 3.95
2794 3045 4.118093 TGTTCGCGGATTCAATTCTCTA 57.882 40.909 6.13 0.00 0.00 2.43
2799 3050 2.347661 GCGGATTCAATTCTCTAACGCG 60.348 50.000 3.53 3.53 35.11 6.01
2801 3052 3.180584 CGGATTCAATTCTCTAACGCGAG 59.819 47.826 15.93 0.00 0.00 5.03
2832 3083 2.014010 TTTTCCCCAAGCTGCTGAAT 57.986 45.000 1.35 0.00 0.00 2.57
2843 3095 3.225104 AGCTGCTGAATGGAAGTTTTGA 58.775 40.909 0.00 0.00 0.00 2.69
2879 3131 5.833131 TGTCCTAAAATTATTGAGGGATGCC 59.167 40.000 0.00 0.00 37.72 4.40
2880 3132 5.243954 GTCCTAAAATTATTGAGGGATGCCC 59.756 44.000 0.00 0.00 45.90 5.36
2891 3143 3.428687 GGATGCCCTCTTTCCCATC 57.571 57.895 0.00 0.00 34.73 3.51
2892 3144 0.849417 GGATGCCCTCTTTCCCATCT 59.151 55.000 0.00 0.00 35.57 2.90
2893 3145 1.202867 GGATGCCCTCTTTCCCATCTC 60.203 57.143 0.00 0.00 35.57 2.75
2894 3146 0.471617 ATGCCCTCTTTCCCATCTCG 59.528 55.000 0.00 0.00 0.00 4.04
2895 3147 0.909610 TGCCCTCTTTCCCATCTCGT 60.910 55.000 0.00 0.00 0.00 4.18
2896 3148 1.120530 GCCCTCTTTCCCATCTCGTA 58.879 55.000 0.00 0.00 0.00 3.43
2897 3149 1.069358 GCCCTCTTTCCCATCTCGTAG 59.931 57.143 0.00 0.00 0.00 3.51
2898 3150 2.389715 CCCTCTTTCCCATCTCGTAGT 58.610 52.381 0.00 0.00 0.00 2.73
2899 3151 2.362717 CCCTCTTTCCCATCTCGTAGTC 59.637 54.545 0.00 0.00 0.00 2.59
2900 3152 2.362717 CCTCTTTCCCATCTCGTAGTCC 59.637 54.545 0.00 0.00 0.00 3.85
2901 3153 3.024547 CTCTTTCCCATCTCGTAGTCCA 58.975 50.000 0.00 0.00 0.00 4.02
2902 3154 2.758979 TCTTTCCCATCTCGTAGTCCAC 59.241 50.000 0.00 0.00 0.00 4.02
2903 3155 2.526888 TTCCCATCTCGTAGTCCACT 57.473 50.000 0.00 0.00 0.00 4.00
2904 3156 2.526888 TCCCATCTCGTAGTCCACTT 57.473 50.000 0.00 0.00 0.00 3.16
2905 3157 3.657398 TCCCATCTCGTAGTCCACTTA 57.343 47.619 0.00 0.00 0.00 2.24
2906 3158 3.972133 TCCCATCTCGTAGTCCACTTAA 58.028 45.455 0.00 0.00 0.00 1.85
2907 3159 4.543689 TCCCATCTCGTAGTCCACTTAAT 58.456 43.478 0.00 0.00 0.00 1.40
2908 3160 4.960469 TCCCATCTCGTAGTCCACTTAATT 59.040 41.667 0.00 0.00 0.00 1.40
2909 3161 5.050490 CCCATCTCGTAGTCCACTTAATTG 58.950 45.833 0.00 0.00 0.00 2.32
2910 3162 5.395324 CCCATCTCGTAGTCCACTTAATTGT 60.395 44.000 0.00 0.00 0.00 2.71
2911 3163 5.749109 CCATCTCGTAGTCCACTTAATTGTC 59.251 44.000 0.00 0.00 0.00 3.18
2912 3164 6.405953 CCATCTCGTAGTCCACTTAATTGTCT 60.406 42.308 0.00 0.00 0.00 3.41
2913 3165 6.585695 TCTCGTAGTCCACTTAATTGTCTT 57.414 37.500 0.00 0.00 0.00 3.01
2914 3166 6.989659 TCTCGTAGTCCACTTAATTGTCTTT 58.010 36.000 0.00 0.00 0.00 2.52
2915 3167 8.114331 TCTCGTAGTCCACTTAATTGTCTTTA 57.886 34.615 0.00 0.00 0.00 1.85
2916 3168 8.025445 TCTCGTAGTCCACTTAATTGTCTTTAC 58.975 37.037 0.00 0.00 0.00 2.01
2917 3169 7.889469 TCGTAGTCCACTTAATTGTCTTTACT 58.111 34.615 0.00 0.00 0.00 2.24
2918 3170 9.013229 TCGTAGTCCACTTAATTGTCTTTACTA 57.987 33.333 0.00 0.00 0.00 1.82
2919 3171 9.070149 CGTAGTCCACTTAATTGTCTTTACTAC 57.930 37.037 0.00 0.00 34.78 2.73
2920 3172 9.070149 GTAGTCCACTTAATTGTCTTTACTACG 57.930 37.037 0.00 0.00 30.01 3.51
2921 3173 7.095270 AGTCCACTTAATTGTCTTTACTACGG 58.905 38.462 0.00 0.00 0.00 4.02
2922 3174 6.312180 GTCCACTTAATTGTCTTTACTACGGG 59.688 42.308 0.00 0.00 0.00 5.28
2923 3175 5.583457 CCACTTAATTGTCTTTACTACGGGG 59.417 44.000 0.00 0.00 0.00 5.73
2924 3176 6.168389 CACTTAATTGTCTTTACTACGGGGT 58.832 40.000 0.00 0.00 0.00 4.95
2925 3177 6.091713 CACTTAATTGTCTTTACTACGGGGTG 59.908 42.308 0.00 0.00 0.00 4.61
2926 3178 2.460757 TTGTCTTTACTACGGGGTGC 57.539 50.000 0.00 0.00 0.00 5.01
2938 3215 1.820581 GGGGTGCAGCTACGTCATA 59.179 57.895 16.65 0.00 0.00 2.15
2967 3244 0.675633 CAGTTTGGTGCTTCCTTGGG 59.324 55.000 0.80 0.00 37.07 4.12
3092 3373 0.322008 GGATGCGATCCCCAATCTCC 60.322 60.000 4.36 0.00 43.88 3.71
3125 3406 8.631797 GGTAGTCTATCTGTAAAACTAGGAAGG 58.368 40.741 0.00 0.00 0.00 3.46
3138 3419 7.591421 AAACTAGGAAGGTATCTCTTAGCTC 57.409 40.000 0.00 0.00 37.67 4.09
3155 3436 7.220030 TCTTAGCTCTGGCCTTAATCTAATTG 58.780 38.462 3.32 0.00 39.73 2.32
3203 3484 1.705186 GATTGGATTGCTAGCCCCCTA 59.295 52.381 13.29 7.90 0.00 3.53
3312 3593 1.202222 CCCTAGCCGTAGTACACAACG 60.202 57.143 0.38 8.06 38.80 4.10
3390 3672 8.716909 CAAAGTAAGTCCATGTTGTTTGTTTTT 58.283 29.630 0.00 0.00 0.00 1.94
3501 4258 7.332678 GCTGCTTTGAACAAGGAAAATAATCAT 59.667 33.333 1.01 0.00 0.00 2.45
3596 4379 8.821147 TTTGTGTAATGTACTCAGTTTATCGT 57.179 30.769 0.00 0.00 34.19 3.73
3658 4441 0.168128 GTTTATGGCCGTGCACTGAC 59.832 55.000 16.19 11.79 0.00 3.51
3799 4584 5.049336 CAGTGATTTTTGGCATGAATTTGCA 60.049 36.000 0.00 0.00 44.59 4.08
3831 4625 5.894298 AGGACATAGCCAATGATCAGTAA 57.106 39.130 0.09 0.00 39.07 2.24
3832 4626 6.252599 AGGACATAGCCAATGATCAGTAAA 57.747 37.500 0.09 0.00 39.07 2.01
3938 4735 3.446873 TGAATGGGTGTTCATAACATGCC 59.553 43.478 0.00 0.00 44.35 4.40
3984 4781 6.096282 GTCCTCTCTGCTCTTAGTGTCTTTAT 59.904 42.308 0.00 0.00 0.00 1.40
4009 4806 7.548196 TGTATAGTTACTTAAAGGCATGTGC 57.452 36.000 0.00 0.00 41.14 4.57
4010 4807 7.106890 TGTATAGTTACTTAAAGGCATGTGCA 58.893 34.615 7.36 0.00 44.36 4.57
4011 4808 7.773224 TGTATAGTTACTTAAAGGCATGTGCAT 59.227 33.333 7.36 0.00 44.36 3.96
4188 4992 6.076981 AGCATACTTTTCAAAACACTCAGG 57.923 37.500 0.00 0.00 0.00 3.86
4315 5123 8.153550 ACCTGATATAGTTATGAAGAAGCTTGG 58.846 37.037 2.10 0.00 0.00 3.61
4346 5154 8.477419 TTCAAGAAATACCAATTGGAAAGTCT 57.523 30.769 31.22 21.63 38.94 3.24
4362 5170 1.438651 GTCTGGCAAAGACGCATGTA 58.561 50.000 3.32 0.00 45.76 2.29
4528 5336 3.565482 ACACTTCTTGCATCGTTCACAAT 59.435 39.130 0.00 0.00 0.00 2.71
4589 5400 2.482336 TCATCCAACGGAAACATCAACG 59.518 45.455 0.00 0.00 34.34 4.10
4680 5491 1.905354 GCCTTTCAGCCTTGCCTGT 60.905 57.895 0.00 0.00 34.47 4.00
4712 5524 3.627395 TGACTTATAGTGGGTGGCAAG 57.373 47.619 0.00 0.00 0.00 4.01
4754 5572 4.865776 TGATCCATGGACGTTTTTCAAAC 58.134 39.130 18.99 0.00 0.00 2.93
4851 5669 0.470341 CCCTAGCCTTAGTCTTGGGC 59.530 60.000 0.00 7.45 45.57 5.36
4877 5695 9.898152 CTCATCTCTATTAAAAAGAAGTCCCTT 57.102 33.333 0.00 0.00 0.00 3.95
5328 6215 4.072131 TGAACTGCACTACAAAGGAATCC 58.928 43.478 0.00 0.00 0.00 3.01
5426 6502 7.336679 TCATGCTTCTGCTTTGTATAGCTAAAA 59.663 33.333 0.00 0.00 41.76 1.52
5499 6575 4.515191 TCTTCTTGGGAGTTCATCAAAACG 59.485 41.667 0.00 0.00 34.27 3.60
5520 6596 3.594134 GCTATCATCTGGTATGGCACTC 58.406 50.000 0.00 0.00 30.64 3.51
5682 6758 3.935203 CACATCGTTCTTCACCTGCTATT 59.065 43.478 0.00 0.00 0.00 1.73
5783 6859 8.984891 TGCTTTTTGTTCATATACAATGAAGG 57.015 30.769 0.81 1.73 38.54 3.46
5808 6886 4.880759 AGTCTGTCATATGTAGCATCAGC 58.119 43.478 1.90 0.00 42.56 4.26
6110 7188 9.477484 TGAACTCTCTCAAGTATTAGTTTGTTC 57.523 33.333 0.00 0.00 0.00 3.18
6229 7307 5.415701 TGCCCTATGTGTTCTCTTGAAAATC 59.584 40.000 0.00 0.00 33.52 2.17
6376 7455 1.943340 CTTCCGATCTTTTGCTAGGGC 59.057 52.381 0.00 0.00 39.26 5.19
6454 7535 7.604164 TGAAAATATCTTGACTGGTCTTCAGAC 59.396 37.037 0.00 0.00 46.18 3.51
6523 7604 1.886542 CACTCCTTTTGGGCCAGTAAC 59.113 52.381 6.23 0.00 40.87 2.50
6537 7618 3.754850 GCCAGTAACGGAGGTAACAAAAT 59.245 43.478 0.00 0.00 41.41 1.82
6564 7645 5.458041 AAGTTATCTTGTTGCTGCATGTT 57.542 34.783 1.84 0.00 32.09 2.71
6568 7649 2.241160 TCTTGTTGCTGCATGTTCCAT 58.759 42.857 1.84 0.00 0.00 3.41
6570 7651 1.330234 TGTTGCTGCATGTTCCATGT 58.670 45.000 1.84 0.00 0.00 3.21
6585 7666 3.966979 TCCATGTGTTGCATCTAATGGT 58.033 40.909 19.89 0.00 36.70 3.55
6631 7715 1.474077 GGGACAATTAGTTGGCAGCAG 59.526 52.381 6.12 0.00 45.61 4.24
6797 7881 6.976349 TGCTGATTCTTTTGCTTATATTGCAG 59.024 34.615 3.84 0.00 41.71 4.41
6810 7897 6.073003 GCTTATATTGCAGGAGATGTACAACC 60.073 42.308 0.00 4.30 0.00 3.77
6999 8086 7.294017 TCCAAGAAGCAAAGAAAAAGATGAT 57.706 32.000 0.00 0.00 0.00 2.45
7136 8223 6.697892 CGGTATGTGTGTATTTTTGTTTTGGT 59.302 34.615 0.00 0.00 0.00 3.67
7158 8245 6.322712 TGGTTAATGCTTTCAGGTACTTTGTT 59.677 34.615 0.00 0.00 34.60 2.83
7384 8471 2.125350 CTCCAGAGGCTGTTCCGC 60.125 66.667 0.00 0.00 40.77 5.54
7408 8495 2.418628 CGTTCAGTCGGTTGCCATTATT 59.581 45.455 0.00 0.00 0.00 1.40
7432 8519 4.800914 GCCGTGCTGAATGTTCCTCTATAT 60.801 45.833 0.00 0.00 0.00 0.86
7502 8589 6.042552 TCTCAAAGCCTAGCTCTATAATTGCT 59.957 38.462 0.00 0.00 38.25 3.91
7503 8590 7.233553 TCTCAAAGCCTAGCTCTATAATTGCTA 59.766 37.037 0.00 0.00 38.25 3.49
7505 8592 6.926630 AAGCCTAGCTCTATAATTGCTACT 57.073 37.500 0.00 0.00 38.25 2.57
7663 8887 2.275318 CAAGTCGAATTCAGGAGAGCC 58.725 52.381 6.22 0.00 0.00 4.70
7667 8891 1.753649 TCGAATTCAGGAGAGCCTCTG 59.246 52.381 0.00 0.00 44.80 3.35
7730 8954 3.370978 ACATAGCGTTTGGATTGAACTCG 59.629 43.478 0.00 0.00 0.00 4.18
7733 8957 2.223377 AGCGTTTGGATTGAACTCGTTC 59.777 45.455 2.92 2.92 39.91 3.95
7745 9389 2.457366 ACTCGTTCCGATGCTTCTTT 57.543 45.000 0.00 0.00 34.61 2.52
7771 9415 1.226859 CCTTGCCAGCGATTGCATG 60.227 57.895 7.90 2.74 46.23 4.06
7778 9422 2.039974 AGCGATTGCATGCACCGAA 61.040 52.632 32.85 17.19 46.23 4.30
7779 9423 1.064621 GCGATTGCATGCACCGAAT 59.935 52.632 32.85 20.69 42.15 3.34
7781 9425 0.099259 CGATTGCATGCACCGAATGT 59.901 50.000 27.83 7.97 0.00 2.71
7782 9426 1.467883 CGATTGCATGCACCGAATGTT 60.468 47.619 27.83 5.75 0.00 2.71
7784 9428 2.063156 TTGCATGCACCGAATGTTTC 57.937 45.000 22.58 0.00 0.00 2.78
7787 9431 1.987770 GCATGCACCGAATGTTTCTTG 59.012 47.619 14.21 0.00 0.00 3.02
7789 9433 0.313672 TGCACCGAATGTTTCTTGGC 59.686 50.000 0.00 0.00 0.00 4.52
7790 9434 0.729140 GCACCGAATGTTTCTTGGCG 60.729 55.000 0.00 0.00 0.00 5.69
7792 9436 0.872388 ACCGAATGTTTCTTGGCGTC 59.128 50.000 0.00 0.00 0.00 5.19
7793 9437 1.156736 CCGAATGTTTCTTGGCGTCT 58.843 50.000 0.00 0.00 0.00 4.18
7794 9438 1.535462 CCGAATGTTTCTTGGCGTCTT 59.465 47.619 0.00 0.00 0.00 3.01
7795 9439 2.574322 CGAATGTTTCTTGGCGTCTTG 58.426 47.619 0.00 0.00 0.00 3.02
7796 9440 2.319472 GAATGTTTCTTGGCGTCTTGC 58.681 47.619 0.00 0.00 45.38 4.01
7797 9441 1.609208 ATGTTTCTTGGCGTCTTGCT 58.391 45.000 0.00 0.00 45.43 3.91
7798 9442 1.388547 TGTTTCTTGGCGTCTTGCTT 58.611 45.000 0.00 0.00 45.43 3.91
7799 9443 1.065401 TGTTTCTTGGCGTCTTGCTTG 59.935 47.619 0.00 0.00 45.43 4.01
7801 9445 0.465460 TTCTTGGCGTCTTGCTTGGT 60.465 50.000 0.00 0.00 45.43 3.67
7803 9447 0.798776 CTTGGCGTCTTGCTTGGTAG 59.201 55.000 0.00 0.00 45.43 3.18
7814 10827 1.985159 TGCTTGGTAGTGACATTCCCT 59.015 47.619 0.00 0.00 0.00 4.20
7817 10830 3.307762 GCTTGGTAGTGACATTCCCTTCT 60.308 47.826 0.00 0.00 0.00 2.85
7842 11415 4.286297 TGGGAGACAACTTGTTCATAGG 57.714 45.455 0.00 0.00 0.00 2.57
7849 11422 8.041323 GGAGACAACTTGTTCATAGGAAAGATA 58.959 37.037 0.00 0.00 34.13 1.98
7918 11491 9.643652 GCTACAGATTCTTTCAGAAAATAATCG 57.356 33.333 17.27 15.29 40.35 3.34
8008 11583 2.157085 TCTCGCGAGCTATGTACATACG 59.843 50.000 30.97 14.27 0.00 3.06
8009 11584 0.975544 CGCGAGCTATGTACATACGC 59.024 55.000 26.91 26.91 40.91 4.42
8021 11596 3.621268 TGTACATACGCTTCTGAAATGGC 59.379 43.478 0.00 0.00 0.00 4.40
8083 11658 4.082190 TGCGCACTCTTAAGTCTCAACTAT 60.082 41.667 5.66 0.00 33.48 2.12
8234 11809 5.751509 TGAGTTACCGACATAAAATGATCCG 59.248 40.000 0.00 0.00 0.00 4.18
8252 11827 5.923684 TGATCCGTTTTGCACCTTTTAATTC 59.076 36.000 0.00 0.00 0.00 2.17
8328 11904 8.354711 TGGTCCATATGAGTATGAGTATCTTC 57.645 38.462 3.65 0.00 40.12 2.87
8393 11969 2.627699 TGTCTGGCCATTTTGTTCCTTC 59.372 45.455 5.51 0.00 0.00 3.46
8401 11977 4.082733 GCCATTTTGTTCCTTCTACTCCAC 60.083 45.833 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.530288 TGTTCGTCTCATGCATCCGA 59.470 50.000 0.00 0.00 0.00 4.55
1 2 1.259770 CATGTTCGTCTCATGCATCCG 59.740 52.381 0.00 0.00 36.68 4.18
2 3 2.283298 ACATGTTCGTCTCATGCATCC 58.717 47.619 0.00 0.00 44.26 3.51
3 4 4.610007 GCATACATGTTCGTCTCATGCATC 60.610 45.833 18.22 0.00 44.26 3.91
4 5 3.249320 GCATACATGTTCGTCTCATGCAT 59.751 43.478 18.22 0.00 44.26 3.96
5 6 2.609002 GCATACATGTTCGTCTCATGCA 59.391 45.455 18.22 0.00 44.26 3.96
6 7 2.609002 TGCATACATGTTCGTCTCATGC 59.391 45.455 16.89 16.89 44.26 4.06
7 8 4.863152 TTGCATACATGTTCGTCTCATG 57.137 40.909 2.30 0.37 45.41 3.07
8 9 5.585844 TCATTTGCATACATGTTCGTCTCAT 59.414 36.000 2.30 0.00 0.00 2.90
9 10 4.934602 TCATTTGCATACATGTTCGTCTCA 59.065 37.500 2.30 0.00 0.00 3.27
10 11 5.469373 TCATTTGCATACATGTTCGTCTC 57.531 39.130 2.30 0.00 0.00 3.36
11 12 5.878332 TTCATTTGCATACATGTTCGTCT 57.122 34.783 2.30 0.00 0.00 4.18
12 13 6.506827 GCATTTCATTTGCATACATGTTCGTC 60.507 38.462 2.30 0.00 39.90 4.20
13 14 5.289193 GCATTTCATTTGCATACATGTTCGT 59.711 36.000 2.30 0.00 39.90 3.85
14 15 5.288952 TGCATTTCATTTGCATACATGTTCG 59.711 36.000 2.30 0.00 44.73 3.95
15 16 6.650239 TGCATTTCATTTGCATACATGTTC 57.350 33.333 2.30 0.00 44.73 3.18
24 25 6.819146 ATGTTATCATGTGCATTTCATTTGCA 59.181 30.769 0.00 0.00 39.06 4.08
25 26 6.650239 TGTTATCATGTGCATTTCATTTGC 57.350 33.333 0.00 0.00 40.55 3.68
37 38 8.466798 ATGCATTCCATATCATGTTATCATGTG 58.533 33.333 12.41 5.18 41.08 3.21
38 39 8.466798 CATGCATTCCATATCATGTTATCATGT 58.533 33.333 12.41 4.55 41.07 3.21
39 40 8.682710 TCATGCATTCCATATCATGTTATCATG 58.317 33.333 0.00 7.36 41.33 3.07
40 41 8.683615 GTCATGCATTCCATATCATGTTATCAT 58.316 33.333 0.00 0.00 37.95 2.45
41 42 7.666388 TGTCATGCATTCCATATCATGTTATCA 59.334 33.333 0.00 0.00 37.95 2.15
42 43 7.966753 GTGTCATGCATTCCATATCATGTTATC 59.033 37.037 0.00 0.00 37.95 1.75
43 44 7.361457 CGTGTCATGCATTCCATATCATGTTAT 60.361 37.037 0.00 0.00 37.95 1.89
44 45 6.073112 CGTGTCATGCATTCCATATCATGTTA 60.073 38.462 0.00 0.00 37.95 2.41
45 46 5.278120 CGTGTCATGCATTCCATATCATGTT 60.278 40.000 0.00 0.00 37.95 2.71
46 47 4.214758 CGTGTCATGCATTCCATATCATGT 59.785 41.667 0.00 0.00 37.95 3.21
47 48 4.719040 CGTGTCATGCATTCCATATCATG 58.281 43.478 0.00 0.00 38.05 3.07
48 49 3.189910 GCGTGTCATGCATTCCATATCAT 59.810 43.478 12.29 0.00 31.47 2.45
49 50 2.549329 GCGTGTCATGCATTCCATATCA 59.451 45.455 12.29 0.00 31.47 2.15
50 51 2.549329 TGCGTGTCATGCATTCCATATC 59.451 45.455 15.85 0.00 34.76 1.63
51 52 2.574450 TGCGTGTCATGCATTCCATAT 58.426 42.857 15.85 0.00 34.76 1.78
52 53 2.035530 TGCGTGTCATGCATTCCATA 57.964 45.000 15.85 0.00 34.76 2.74
53 54 1.133598 CTTGCGTGTCATGCATTCCAT 59.866 47.619 20.13 0.00 40.22 3.41
54 55 0.522626 CTTGCGTGTCATGCATTCCA 59.477 50.000 20.13 4.84 40.22 3.53
55 56 0.799534 GCTTGCGTGTCATGCATTCC 60.800 55.000 20.13 8.18 40.22 3.01
56 57 0.109643 TGCTTGCGTGTCATGCATTC 60.110 50.000 20.13 14.52 46.71 2.67
57 58 1.958323 TGCTTGCGTGTCATGCATT 59.042 47.368 20.13 0.00 46.71 3.56
58 59 3.670989 TGCTTGCGTGTCATGCAT 58.329 50.000 20.13 0.00 46.71 3.96
60 61 0.109643 TCATTGCTTGCGTGTCATGC 60.110 50.000 10.25 10.25 43.74 4.06
61 62 1.069091 TGTCATTGCTTGCGTGTCATG 60.069 47.619 0.00 0.00 0.00 3.07
62 63 1.237533 TGTCATTGCTTGCGTGTCAT 58.762 45.000 0.00 0.00 0.00 3.06
63 64 1.002576 CTTGTCATTGCTTGCGTGTCA 60.003 47.619 0.00 0.00 0.00 3.58
64 65 1.664016 CCTTGTCATTGCTTGCGTGTC 60.664 52.381 0.00 0.00 0.00 3.67
65 66 0.311790 CCTTGTCATTGCTTGCGTGT 59.688 50.000 0.00 0.00 0.00 4.49
66 67 1.005294 GCCTTGTCATTGCTTGCGTG 61.005 55.000 0.00 0.00 0.00 5.34
67 68 1.286880 GCCTTGTCATTGCTTGCGT 59.713 52.632 0.00 0.00 0.00 5.24
68 69 0.318869 TTGCCTTGTCATTGCTTGCG 60.319 50.000 0.00 0.00 0.00 4.85
69 70 1.142474 GTTGCCTTGTCATTGCTTGC 58.858 50.000 0.00 0.00 0.00 4.01
70 71 2.512485 TGTTGCCTTGTCATTGCTTG 57.488 45.000 0.00 0.00 0.00 4.01
71 72 2.168106 TGTTGTTGCCTTGTCATTGCTT 59.832 40.909 0.00 0.00 0.00 3.91
72 73 1.755959 TGTTGTTGCCTTGTCATTGCT 59.244 42.857 0.00 0.00 0.00 3.91
73 74 2.222007 TGTTGTTGCCTTGTCATTGC 57.778 45.000 0.00 0.00 0.00 3.56
74 75 2.535166 CGTTGTTGTTGCCTTGTCATTG 59.465 45.455 0.00 0.00 0.00 2.82
75 76 2.425312 TCGTTGTTGTTGCCTTGTCATT 59.575 40.909 0.00 0.00 0.00 2.57
76 77 2.020720 TCGTTGTTGTTGCCTTGTCAT 58.979 42.857 0.00 0.00 0.00 3.06
77 78 1.454201 TCGTTGTTGTTGCCTTGTCA 58.546 45.000 0.00 0.00 0.00 3.58
78 79 2.553079 TTCGTTGTTGTTGCCTTGTC 57.447 45.000 0.00 0.00 0.00 3.18
79 80 4.097286 AGTTATTCGTTGTTGTTGCCTTGT 59.903 37.500 0.00 0.00 0.00 3.16
80 81 4.440758 CAGTTATTCGTTGTTGTTGCCTTG 59.559 41.667 0.00 0.00 0.00 3.61
81 82 4.499019 CCAGTTATTCGTTGTTGTTGCCTT 60.499 41.667 0.00 0.00 0.00 4.35
82 83 3.004315 CCAGTTATTCGTTGTTGTTGCCT 59.996 43.478 0.00 0.00 0.00 4.75
83 84 3.003897 TCCAGTTATTCGTTGTTGTTGCC 59.996 43.478 0.00 0.00 0.00 4.52
84 85 4.217754 TCCAGTTATTCGTTGTTGTTGC 57.782 40.909 0.00 0.00 0.00 4.17
85 86 4.513692 TCCTCCAGTTATTCGTTGTTGTTG 59.486 41.667 0.00 0.00 0.00 3.33
86 87 4.514066 GTCCTCCAGTTATTCGTTGTTGTT 59.486 41.667 0.00 0.00 0.00 2.83
87 88 4.062991 GTCCTCCAGTTATTCGTTGTTGT 58.937 43.478 0.00 0.00 0.00 3.32
88 89 4.062293 TGTCCTCCAGTTATTCGTTGTTG 58.938 43.478 0.00 0.00 0.00 3.33
89 90 4.062991 GTGTCCTCCAGTTATTCGTTGTT 58.937 43.478 0.00 0.00 0.00 2.83
90 91 3.556423 GGTGTCCTCCAGTTATTCGTTGT 60.556 47.826 0.00 0.00 0.00 3.32
91 92 3.000727 GGTGTCCTCCAGTTATTCGTTG 58.999 50.000 0.00 0.00 0.00 4.10
92 93 2.027469 GGGTGTCCTCCAGTTATTCGTT 60.027 50.000 0.00 0.00 0.00 3.85
93 94 1.553704 GGGTGTCCTCCAGTTATTCGT 59.446 52.381 0.00 0.00 0.00 3.85
94 95 1.470979 CGGGTGTCCTCCAGTTATTCG 60.471 57.143 0.00 0.00 0.00 3.34
95 96 1.134491 CCGGGTGTCCTCCAGTTATTC 60.134 57.143 0.00 0.00 0.00 1.75
96 97 0.909623 CCGGGTGTCCTCCAGTTATT 59.090 55.000 0.00 0.00 0.00 1.40
97 98 1.623542 GCCGGGTGTCCTCCAGTTAT 61.624 60.000 2.18 0.00 0.00 1.89
98 99 2.288025 GCCGGGTGTCCTCCAGTTA 61.288 63.158 2.18 0.00 0.00 2.24
99 100 3.637273 GCCGGGTGTCCTCCAGTT 61.637 66.667 2.18 0.00 0.00 3.16
100 101 4.954118 TGCCGGGTGTCCTCCAGT 62.954 66.667 2.18 0.00 0.00 4.00
101 102 4.394712 GTGCCGGGTGTCCTCCAG 62.395 72.222 2.18 0.00 0.00 3.86
103 104 3.682292 GATGTGCCGGGTGTCCTCC 62.682 68.421 2.18 0.00 0.00 4.30
104 105 2.125106 GATGTGCCGGGTGTCCTC 60.125 66.667 2.18 0.00 0.00 3.71
105 106 4.082523 CGATGTGCCGGGTGTCCT 62.083 66.667 2.18 0.00 0.00 3.85
113 114 4.873129 CCCGAGACCGATGTGCCG 62.873 72.222 0.00 0.00 38.22 5.69
114 115 4.530857 CCCCGAGACCGATGTGCC 62.531 72.222 0.00 0.00 38.22 5.01
116 117 4.873129 CGCCCCGAGACCGATGTG 62.873 72.222 0.00 0.00 38.22 3.21
118 119 2.777972 TAACGCCCCGAGACCGATG 61.778 63.158 0.00 0.00 38.22 3.84
119 120 2.440796 TAACGCCCCGAGACCGAT 60.441 61.111 0.00 0.00 38.22 4.18
120 121 3.443045 GTAACGCCCCGAGACCGA 61.443 66.667 0.00 0.00 38.22 4.69
121 122 2.768503 TTTGTAACGCCCCGAGACCG 62.769 60.000 0.00 0.00 0.00 4.79
122 123 1.004679 TTTGTAACGCCCCGAGACC 60.005 57.895 0.00 0.00 0.00 3.85
123 124 1.017701 CCTTTGTAACGCCCCGAGAC 61.018 60.000 0.00 0.00 0.00 3.36
124 125 1.186917 TCCTTTGTAACGCCCCGAGA 61.187 55.000 0.00 0.00 0.00 4.04
125 126 0.739813 CTCCTTTGTAACGCCCCGAG 60.740 60.000 0.00 0.00 0.00 4.63
126 127 1.294138 CTCCTTTGTAACGCCCCGA 59.706 57.895 0.00 0.00 0.00 5.14
127 128 2.396157 GCTCCTTTGTAACGCCCCG 61.396 63.158 0.00 0.00 0.00 5.73
128 129 1.302993 TGCTCCTTTGTAACGCCCC 60.303 57.895 0.00 0.00 0.00 5.80
129 130 1.873863 GTGCTCCTTTGTAACGCCC 59.126 57.895 0.00 0.00 0.00 6.13
130 131 0.947180 TCGTGCTCCTTTGTAACGCC 60.947 55.000 0.00 0.00 34.38 5.68
131 132 0.163146 GTCGTGCTCCTTTGTAACGC 59.837 55.000 0.00 0.00 34.38 4.84
132 133 0.433492 CGTCGTGCTCCTTTGTAACG 59.567 55.000 0.00 0.00 35.64 3.18
133 134 1.454653 GTCGTCGTGCTCCTTTGTAAC 59.545 52.381 0.00 0.00 0.00 2.50
134 135 1.067364 TGTCGTCGTGCTCCTTTGTAA 59.933 47.619 0.00 0.00 0.00 2.41
135 136 0.669619 TGTCGTCGTGCTCCTTTGTA 59.330 50.000 0.00 0.00 0.00 2.41
136 137 0.033504 ATGTCGTCGTGCTCCTTTGT 59.966 50.000 0.00 0.00 0.00 2.83
137 138 0.439985 CATGTCGTCGTGCTCCTTTG 59.560 55.000 0.00 0.00 0.00 2.77
138 139 0.670546 CCATGTCGTCGTGCTCCTTT 60.671 55.000 0.00 0.00 0.00 3.11
139 140 1.079819 CCATGTCGTCGTGCTCCTT 60.080 57.895 0.00 0.00 0.00 3.36
140 141 2.214181 GACCATGTCGTCGTGCTCCT 62.214 60.000 0.00 0.00 0.00 3.69
141 142 1.805945 GACCATGTCGTCGTGCTCC 60.806 63.158 0.00 0.00 0.00 4.70
142 143 3.768632 GACCATGTCGTCGTGCTC 58.231 61.111 0.00 0.00 0.00 4.26
151 152 2.100631 CCTTGTCGGCGACCATGTC 61.101 63.158 34.28 11.72 0.00 3.06
152 153 2.047274 CCTTGTCGGCGACCATGT 60.047 61.111 34.28 0.00 0.00 3.21
153 154 1.811266 CTCCTTGTCGGCGACCATG 60.811 63.158 34.28 21.67 0.00 3.66
154 155 2.579201 CTCCTTGTCGGCGACCAT 59.421 61.111 34.28 0.00 0.00 3.55
155 156 3.691342 CCTCCTTGTCGGCGACCA 61.691 66.667 34.28 24.30 0.00 4.02
163 164 4.475135 GAGGGCGGCCTCCTTGTC 62.475 72.222 40.54 20.70 34.21 3.18
165 166 2.843912 ATTTGAGGGCGGCCTCCTTG 62.844 60.000 44.27 0.00 36.10 3.61
166 167 2.616458 ATTTGAGGGCGGCCTCCTT 61.616 57.895 44.27 29.99 36.10 3.36
167 168 3.017581 ATTTGAGGGCGGCCTCCT 61.018 61.111 44.27 30.18 36.10 3.69
168 169 2.830370 CATTTGAGGGCGGCCTCC 60.830 66.667 44.27 30.36 36.10 4.30
169 170 2.830370 CCATTTGAGGGCGGCCTC 60.830 66.667 42.55 42.55 37.35 4.70
170 171 4.447342 CCCATTTGAGGGCGGCCT 62.447 66.667 33.40 33.40 43.10 5.19
197 198 2.701780 CGCTCCAGCTGGACGTAGT 61.702 63.158 32.11 0.00 39.78 2.73
198 199 2.103143 CGCTCCAGCTGGACGTAG 59.897 66.667 32.11 24.62 39.78 3.51
199 200 4.129737 GCGCTCCAGCTGGACGTA 62.130 66.667 35.99 20.56 39.78 3.57
235 236 1.828660 GGGATCTCTTCGAGGGCGA 60.829 63.158 0.00 0.00 46.33 5.54
236 237 2.731374 GGGATCTCTTCGAGGGCG 59.269 66.667 0.00 0.00 39.35 6.13
237 238 2.862223 CGGGGATCTCTTCGAGGGC 61.862 68.421 0.00 0.00 0.00 5.19
238 239 2.862223 GCGGGGATCTCTTCGAGGG 61.862 68.421 0.00 0.00 0.00 4.30
239 240 2.731374 GCGGGGATCTCTTCGAGG 59.269 66.667 0.00 0.00 0.00 4.63
240 241 2.333225 CGCGGGGATCTCTTCGAG 59.667 66.667 0.00 0.00 0.00 4.04
241 242 3.217017 CCGCGGGGATCTCTTCGA 61.217 66.667 20.10 0.00 34.06 3.71
242 243 4.951963 GCCGCGGGGATCTCTTCG 62.952 72.222 29.38 0.00 34.06 3.79
243 244 4.610714 GGCCGCGGGGATCTCTTC 62.611 72.222 29.38 6.13 34.06 2.87
263 264 3.900892 CTATGACGCCGCCCTCGT 61.901 66.667 0.00 0.00 43.49 4.18
264 265 3.825833 GACTATGACGCCGCCCTCG 62.826 68.421 0.00 0.00 0.00 4.63
265 266 2.027751 GACTATGACGCCGCCCTC 59.972 66.667 0.00 0.00 0.00 4.30
266 267 3.537874 GGACTATGACGCCGCCCT 61.538 66.667 0.00 0.00 0.00 5.19
267 268 3.501458 GAGGACTATGACGCCGCCC 62.501 68.421 0.00 0.00 0.00 6.13
268 269 2.027751 GAGGACTATGACGCCGCC 59.972 66.667 0.00 0.00 0.00 6.13
269 270 2.353607 CGAGGACTATGACGCCGC 60.354 66.667 0.00 0.00 0.00 6.53
270 271 1.280142 CTCGAGGACTATGACGCCG 59.720 63.158 3.91 0.00 0.00 6.46
271 272 0.818445 TCCTCGAGGACTATGACGCC 60.818 60.000 30.49 0.00 39.78 5.68
272 273 2.704108 TCCTCGAGGACTATGACGC 58.296 57.895 30.49 0.00 39.78 5.19
281 282 1.612676 TCAAAGTTCGTCCTCGAGGA 58.387 50.000 30.49 30.49 46.81 3.71
282 283 2.531206 GATCAAAGTTCGTCCTCGAGG 58.469 52.381 26.32 26.32 46.81 4.63
283 284 2.177977 CGATCAAAGTTCGTCCTCGAG 58.822 52.381 5.13 5.13 46.81 4.04
284 285 1.538512 ACGATCAAAGTTCGTCCTCGA 59.461 47.619 0.00 0.00 46.13 4.04
285 286 1.649171 CACGATCAAAGTTCGTCCTCG 59.351 52.381 0.00 0.00 46.13 4.63
286 287 1.993370 CCACGATCAAAGTTCGTCCTC 59.007 52.381 0.00 0.00 46.13 3.71
287 288 1.616865 TCCACGATCAAAGTTCGTCCT 59.383 47.619 0.00 0.00 46.13 3.85
288 289 1.725164 GTCCACGATCAAAGTTCGTCC 59.275 52.381 0.00 0.00 46.13 4.79
289 290 1.385743 CGTCCACGATCAAAGTTCGTC 59.614 52.381 0.00 0.00 46.13 4.20
291 292 1.693467 TCGTCCACGATCAAAGTTCG 58.307 50.000 0.00 0.00 44.22 3.95
298 299 6.624741 ACGATCAAAGTTCGTCCACGATCA 62.625 45.833 11.65 0.00 46.13 2.92
299 300 4.216333 ACGATCAAAGTTCGTCCACGATC 61.216 47.826 2.00 2.31 46.13 3.69
300 301 2.352421 ACGATCAAAGTTCGTCCACGAT 60.352 45.455 2.00 0.00 46.13 3.73
301 302 1.001048 ACGATCAAAGTTCGTCCACGA 60.001 47.619 0.00 0.00 46.13 4.35
315 316 0.817654 AGATGCGGTGAAGACGATCA 59.182 50.000 0.00 0.00 0.00 2.92
319 320 1.428448 TCAAAGATGCGGTGAAGACG 58.572 50.000 0.00 0.00 0.00 4.18
375 376 1.412343 GCCTCCTTTGCTTTGAACCAA 59.588 47.619 0.00 0.00 0.00 3.67
382 383 2.270986 CGGCTGCCTCCTTTGCTTT 61.271 57.895 17.92 0.00 0.00 3.51
424 425 4.651008 GGTTCGTCGACACCCGCA 62.651 66.667 17.16 0.00 38.37 5.69
427 428 4.729856 CCCGGTTCGTCGACACCC 62.730 72.222 17.16 10.48 0.00 4.61
432 433 2.184020 TACTCCTCCCGGTTCGTCGA 62.184 60.000 0.00 0.00 0.00 4.20
437 438 1.661498 GGTCGTACTCCTCCCGGTTC 61.661 65.000 0.00 0.00 0.00 3.62
439 440 2.044551 GGTCGTACTCCTCCCGGT 60.045 66.667 0.00 0.00 0.00 5.28
461 462 0.108138 GGGAGTTGCAGAGCACGTAT 60.108 55.000 0.00 0.00 38.71 3.06
482 483 3.056458 CCGAGGTGGTGCACTACA 58.944 61.111 30.99 13.37 34.40 2.74
483 484 2.434359 GCCGAGGTGGTGCACTAC 60.434 66.667 23.89 23.89 41.21 2.73
485 486 3.640407 ATGCCGAGGTGGTGCACT 61.640 61.111 17.98 0.00 41.21 4.40
487 488 4.720902 CCATGCCGAGGTGGTGCA 62.721 66.667 0.00 0.00 41.21 4.57
500 501 1.097547 CGGAGCCTAACTTGCCCATG 61.098 60.000 0.00 0.00 0.00 3.66
501 502 1.224592 CGGAGCCTAACTTGCCCAT 59.775 57.895 0.00 0.00 0.00 4.00
535 536 2.158784 ACTAGATCGCCGGAGTTCTACT 60.159 50.000 18.65 9.78 0.00 2.57
543 544 4.082081 TCAAACTTAAACTAGATCGCCGGA 60.082 41.667 5.05 0.00 0.00 5.14
545 546 5.968387 ATCAAACTTAAACTAGATCGCCG 57.032 39.130 0.00 0.00 0.00 6.46
623 630 5.182190 TGCGAGCAAATTAAACATACTTCCA 59.818 36.000 0.00 0.00 0.00 3.53
628 635 6.747280 AGTTCATGCGAGCAAATTAAACATAC 59.253 34.615 0.57 0.00 0.00 2.39
644 651 0.726827 ACGCCAACATAGTTCATGCG 59.273 50.000 13.10 13.10 45.39 4.73
646 653 3.436704 AGTTCACGCCAACATAGTTCATG 59.563 43.478 0.37 0.00 40.78 3.07
650 657 6.403878 ACTAATAGTTCACGCCAACATAGTT 58.596 36.000 0.37 0.00 0.00 2.24
695 702 5.847111 ATACATCTAGTAAACAGCGTCCA 57.153 39.130 0.00 0.00 36.05 4.02
696 703 7.064253 ACAAAATACATCTAGTAAACAGCGTCC 59.936 37.037 0.00 0.00 36.05 4.79
708 717 8.450964 ACAAACGGATCAACAAAATACATCTAG 58.549 33.333 0.00 0.00 0.00 2.43
709 718 8.330466 ACAAACGGATCAACAAAATACATCTA 57.670 30.769 0.00 0.00 0.00 1.98
722 731 1.002659 ACGGGATGACAAACGGATCAA 59.997 47.619 0.00 0.00 0.00 2.57
772 781 6.635239 CCGCCATCCTACAAATTTTATTTACG 59.365 38.462 0.00 0.00 0.00 3.18
774 783 7.648039 ACCGCCATCCTACAAATTTTATTTA 57.352 32.000 0.00 0.00 0.00 1.40
778 787 5.986501 AAACCGCCATCCTACAAATTTTA 57.013 34.783 0.00 0.00 0.00 1.52
779 788 4.882842 AAACCGCCATCCTACAAATTTT 57.117 36.364 0.00 0.00 0.00 1.82
812 821 8.944029 CATCATGTCTGTTTTTATCTGTCTCTT 58.056 33.333 0.00 0.00 0.00 2.85
824 833 5.534207 TTTTGCTCCATCATGTCTGTTTT 57.466 34.783 0.00 0.00 0.00 2.43
834 843 1.358787 AGGACCCATTTTGCTCCATCA 59.641 47.619 0.00 0.00 0.00 3.07
839 849 3.686016 TCTAACAGGACCCATTTTGCTC 58.314 45.455 0.00 0.00 0.00 4.26
929 943 4.051237 GCTGGTTTTGAGAAAATCACACC 58.949 43.478 0.00 0.00 36.62 4.16
1054 1083 1.115930 AGGGATCTCGCGGTAGCAAT 61.116 55.000 6.13 0.00 45.49 3.56
1105 1134 1.268794 CCGGTGCAGTCGAGATCTAAG 60.269 57.143 10.52 0.00 0.00 2.18
1151 1180 1.377333 GAGGTGGCTTACTGCACCC 60.377 63.158 0.00 0.00 45.15 4.61
1342 1371 1.168714 GCAACTGAATGTCCAGACCC 58.831 55.000 0.00 0.00 37.59 4.46
1393 1422 1.836166 TCCAAGCTGCTAGAGATGCTT 59.164 47.619 0.90 0.00 45.22 3.91
1458 1487 0.254178 ACTGCCTAGCATGACTTGGG 59.746 55.000 15.32 10.16 41.20 4.12
1495 1524 4.199310 GGGCTAGTGTCAAATAATGAGCA 58.801 43.478 0.00 0.00 39.19 4.26
1554 1585 4.019792 TGACATGGTTACTCTGCACAAT 57.980 40.909 0.00 0.00 0.00 2.71
1678 1878 5.282055 TCAGAAGGGAGCAACATATACTG 57.718 43.478 0.00 0.00 0.00 2.74
1880 2081 7.063898 CGTGCCTTACTCTTCATCCAATATATG 59.936 40.741 0.00 0.00 0.00 1.78
2039 2240 9.288576 CATACCAGTTCATATAACACCATCATT 57.711 33.333 0.00 0.00 0.00 2.57
2107 2308 8.432805 AGATATAGGACAATTAAGGTGTCTTGG 58.567 37.037 17.18 0.00 44.02 3.61
2208 2420 9.143155 AGGTAAAGTGGTAAAAACAATGAATCT 57.857 29.630 0.00 0.00 0.00 2.40
2218 2430 3.318557 CCGGCAAGGTAAAGTGGTAAAAA 59.681 43.478 0.00 0.00 34.51 1.94
2236 2448 2.061773 CTCGTATGTCATCATTCCGGC 58.938 52.381 0.00 0.00 35.70 6.13
2243 2455 5.241728 CCCAACTCTATCTCGTATGTCATCA 59.758 44.000 0.00 0.00 0.00 3.07
2259 2471 0.617820 ATCGGTGCTACCCCAACTCT 60.618 55.000 0.00 0.00 33.75 3.24
2260 2472 0.252197 AATCGGTGCTACCCCAACTC 59.748 55.000 0.00 0.00 33.75 3.01
2261 2473 0.035439 CAATCGGTGCTACCCCAACT 60.035 55.000 0.00 0.00 33.75 3.16
2262 2474 0.035820 TCAATCGGTGCTACCCCAAC 60.036 55.000 0.00 0.00 33.75 3.77
2263 2475 0.693622 TTCAATCGGTGCTACCCCAA 59.306 50.000 0.00 0.00 33.75 4.12
2264 2476 0.251916 CTTCAATCGGTGCTACCCCA 59.748 55.000 0.00 0.00 33.75 4.96
2265 2477 0.539986 TCTTCAATCGGTGCTACCCC 59.460 55.000 0.00 0.00 33.75 4.95
2266 2478 1.480954 TCTCTTCAATCGGTGCTACCC 59.519 52.381 0.00 0.00 33.75 3.69
2267 2479 2.930682 GTTCTCTTCAATCGGTGCTACC 59.069 50.000 0.00 0.00 34.05 3.18
2268 2480 2.930682 GGTTCTCTTCAATCGGTGCTAC 59.069 50.000 0.00 0.00 0.00 3.58
2269 2481 2.565391 TGGTTCTCTTCAATCGGTGCTA 59.435 45.455 0.00 0.00 0.00 3.49
2270 2482 1.347707 TGGTTCTCTTCAATCGGTGCT 59.652 47.619 0.00 0.00 0.00 4.40
2271 2483 1.808411 TGGTTCTCTTCAATCGGTGC 58.192 50.000 0.00 0.00 0.00 5.01
2272 2484 3.599343 TCATGGTTCTCTTCAATCGGTG 58.401 45.455 0.00 0.00 0.00 4.94
2273 2485 3.261897 ACTCATGGTTCTCTTCAATCGGT 59.738 43.478 0.00 0.00 0.00 4.69
2274 2486 3.866651 ACTCATGGTTCTCTTCAATCGG 58.133 45.455 0.00 0.00 0.00 4.18
2275 2487 4.093998 CCAACTCATGGTTCTCTTCAATCG 59.906 45.833 0.00 0.00 44.85 3.34
2276 2488 5.557891 CCAACTCATGGTTCTCTTCAATC 57.442 43.478 0.00 0.00 44.85 2.67
2300 2512 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
2319 2531 3.315880 AGTTAGGGTAGGCTAGAGGTG 57.684 52.381 0.00 0.00 0.00 4.00
2490 2741 1.500474 TAGAGAATCCTGCCACCTGG 58.500 55.000 0.00 0.00 33.66 4.45
2557 2808 6.830912 TGAAAGATAGTAGATTGGGACATGG 58.169 40.000 0.00 0.00 39.30 3.66
2596 2847 3.325870 TGAGTGAAATGCTGAGTAACCG 58.674 45.455 0.00 0.00 0.00 4.44
2647 2898 5.221461 ACAAATGGAAGTCACGAGAAGTAGT 60.221 40.000 0.00 0.00 0.00 2.73
2778 3029 2.347661 CGCGTTAGAGAATTGAATCCGC 60.348 50.000 0.00 0.00 35.63 5.54
2794 3045 1.892209 AAGGTTGGAATTCTCGCGTT 58.108 45.000 5.77 0.00 0.00 4.84
2799 3050 3.901222 TGGGGAAAAAGGTTGGAATTCTC 59.099 43.478 5.23 0.00 0.00 2.87
2801 3052 4.641396 CTTGGGGAAAAAGGTTGGAATTC 58.359 43.478 0.00 0.00 0.00 2.17
2832 3083 0.039256 GCAGCGCATCAAAACTTCCA 60.039 50.000 11.47 0.00 0.00 3.53
2854 3106 6.494835 GGCATCCCTCAATAATTTTAGGACAT 59.505 38.462 0.00 0.00 29.03 3.06
2856 3108 5.243954 GGGCATCCCTCAATAATTTTAGGAC 59.756 44.000 0.00 0.00 41.34 3.85
2879 3131 2.362717 GGACTACGAGATGGGAAAGAGG 59.637 54.545 0.00 0.00 0.00 3.69
2880 3132 3.024547 TGGACTACGAGATGGGAAAGAG 58.975 50.000 0.00 0.00 0.00 2.85
2881 3133 2.758979 GTGGACTACGAGATGGGAAAGA 59.241 50.000 0.00 0.00 0.00 2.52
2882 3134 2.761208 AGTGGACTACGAGATGGGAAAG 59.239 50.000 0.00 0.00 0.00 2.62
2883 3135 2.816411 AGTGGACTACGAGATGGGAAA 58.184 47.619 0.00 0.00 0.00 3.13
2884 3136 2.526888 AGTGGACTACGAGATGGGAA 57.473 50.000 0.00 0.00 0.00 3.97
2885 3137 2.526888 AAGTGGACTACGAGATGGGA 57.473 50.000 0.00 0.00 0.00 4.37
2886 3138 4.939052 ATTAAGTGGACTACGAGATGGG 57.061 45.455 0.00 0.00 0.00 4.00
2887 3139 5.661458 ACAATTAAGTGGACTACGAGATGG 58.339 41.667 7.93 0.00 0.00 3.51
2888 3140 6.565234 AGACAATTAAGTGGACTACGAGATG 58.435 40.000 7.93 0.00 0.00 2.90
2889 3141 6.777213 AGACAATTAAGTGGACTACGAGAT 57.223 37.500 7.93 0.00 0.00 2.75
2890 3142 6.585695 AAGACAATTAAGTGGACTACGAGA 57.414 37.500 7.93 0.00 0.00 4.04
2891 3143 8.027771 AGTAAAGACAATTAAGTGGACTACGAG 58.972 37.037 7.93 0.00 0.00 4.18
2892 3144 7.889469 AGTAAAGACAATTAAGTGGACTACGA 58.111 34.615 7.93 0.00 0.00 3.43
2893 3145 9.070149 GTAGTAAAGACAATTAAGTGGACTACG 57.930 37.037 7.93 0.00 29.87 3.51
2894 3146 9.070149 CGTAGTAAAGACAATTAAGTGGACTAC 57.930 37.037 7.93 13.34 34.73 2.73
2895 3147 8.246180 CCGTAGTAAAGACAATTAAGTGGACTA 58.754 37.037 7.93 4.35 0.00 2.59
2896 3148 7.095270 CCGTAGTAAAGACAATTAAGTGGACT 58.905 38.462 7.93 3.70 0.00 3.85
2897 3149 6.312180 CCCGTAGTAAAGACAATTAAGTGGAC 59.688 42.308 7.93 1.39 0.00 4.02
2898 3150 6.400568 CCCGTAGTAAAGACAATTAAGTGGA 58.599 40.000 7.93 0.00 0.00 4.02
2899 3151 5.583457 CCCCGTAGTAAAGACAATTAAGTGG 59.417 44.000 7.93 0.00 0.00 4.00
2900 3152 6.091713 CACCCCGTAGTAAAGACAATTAAGTG 59.908 42.308 0.45 0.45 0.00 3.16
2901 3153 6.168389 CACCCCGTAGTAAAGACAATTAAGT 58.832 40.000 0.00 0.00 0.00 2.24
2902 3154 5.064325 GCACCCCGTAGTAAAGACAATTAAG 59.936 44.000 0.00 0.00 0.00 1.85
2903 3155 4.937015 GCACCCCGTAGTAAAGACAATTAA 59.063 41.667 0.00 0.00 0.00 1.40
2904 3156 4.020396 TGCACCCCGTAGTAAAGACAATTA 60.020 41.667 0.00 0.00 0.00 1.40
2905 3157 3.244630 TGCACCCCGTAGTAAAGACAATT 60.245 43.478 0.00 0.00 0.00 2.32
2906 3158 2.303600 TGCACCCCGTAGTAAAGACAAT 59.696 45.455 0.00 0.00 0.00 2.71
2907 3159 1.693062 TGCACCCCGTAGTAAAGACAA 59.307 47.619 0.00 0.00 0.00 3.18
2908 3160 1.274167 CTGCACCCCGTAGTAAAGACA 59.726 52.381 0.00 0.00 0.00 3.41
2909 3161 2.005560 GCTGCACCCCGTAGTAAAGAC 61.006 57.143 0.00 0.00 0.00 3.01
2910 3162 0.248289 GCTGCACCCCGTAGTAAAGA 59.752 55.000 0.00 0.00 0.00 2.52
2911 3163 0.249398 AGCTGCACCCCGTAGTAAAG 59.751 55.000 1.02 0.00 0.00 1.85
2912 3164 1.205417 GTAGCTGCACCCCGTAGTAAA 59.795 52.381 1.02 0.00 0.00 2.01
2913 3165 0.819582 GTAGCTGCACCCCGTAGTAA 59.180 55.000 1.02 0.00 0.00 2.24
2914 3166 1.378882 CGTAGCTGCACCCCGTAGTA 61.379 60.000 1.02 0.00 0.00 1.82
2915 3167 2.707849 CGTAGCTGCACCCCGTAGT 61.708 63.158 1.02 0.00 0.00 2.73
2916 3168 2.104331 CGTAGCTGCACCCCGTAG 59.896 66.667 1.02 0.00 0.00 3.51
2917 3169 2.677524 ACGTAGCTGCACCCCGTA 60.678 61.111 1.02 0.00 0.00 4.02
2918 3170 4.065281 GACGTAGCTGCACCCCGT 62.065 66.667 1.02 3.97 0.00 5.28
2919 3171 2.011741 TATGACGTAGCTGCACCCCG 62.012 60.000 1.02 0.44 0.00 5.73
2920 3172 0.393077 ATATGACGTAGCTGCACCCC 59.607 55.000 1.02 0.00 0.00 4.95
2921 3173 3.594603 ATATATGACGTAGCTGCACCC 57.405 47.619 1.02 0.00 0.00 4.61
2922 3174 6.565234 AGATAATATATGACGTAGCTGCACC 58.435 40.000 1.02 0.00 0.00 5.01
2923 3175 7.755373 TGAAGATAATATATGACGTAGCTGCAC 59.245 37.037 1.02 0.00 0.00 4.57
2924 3176 7.826690 TGAAGATAATATATGACGTAGCTGCA 58.173 34.615 1.02 0.00 0.00 4.41
2925 3177 7.971168 ACTGAAGATAATATATGACGTAGCTGC 59.029 37.037 0.00 0.00 0.00 5.25
2926 3178 9.847706 AACTGAAGATAATATATGACGTAGCTG 57.152 33.333 0.00 0.00 0.00 4.24
2938 3215 7.349598 AGGAAGCACCAAACTGAAGATAATAT 58.650 34.615 2.96 0.00 42.04 1.28
2983 3263 1.868469 CTCATCCTTGAGCTGCTAGC 58.132 55.000 8.10 8.10 42.79 3.42
3125 3406 5.793030 TTAAGGCCAGAGCTAAGAGATAC 57.207 43.478 5.01 0.00 39.73 2.24
3138 3419 8.378565 TCTTATCTCCAATTAGATTAAGGCCAG 58.621 37.037 5.01 0.00 37.41 4.85
3203 3484 4.981647 TCATTTATGGGGTCCTCCTTATGT 59.018 41.667 0.00 0.00 35.33 2.29
3280 3561 0.178935 GGCTAGGGAGAGGCTCTCAT 60.179 60.000 37.55 28.85 45.12 2.90
3415 3698 4.709250 TGTAGCACTGTCACCAAAATACA 58.291 39.130 0.00 0.00 0.00 2.29
3501 4258 3.568007 AGCTAAAATTCTTCACGGTTGCA 59.432 39.130 0.00 0.00 0.00 4.08
3581 4364 4.630069 ACCATGCAACGATAAACTGAGTAC 59.370 41.667 0.00 0.00 0.00 2.73
3596 4379 7.319646 GGTAAAAGAACATCATAACCATGCAA 58.680 34.615 0.00 0.00 31.73 4.08
3685 4468 0.833287 TCATCTTGAGGTGGGCTAGC 59.167 55.000 6.04 6.04 0.00 3.42
3799 4584 3.378512 TGGCTATGTCCTTGATGAGAGT 58.621 45.455 0.00 0.00 0.00 3.24
3839 4633 4.640201 AGAAGCTCACAACACTTAGCAAAA 59.360 37.500 0.00 0.00 37.44 2.44
3844 4638 7.293745 CAATACAAGAAGCTCACAACACTTAG 58.706 38.462 0.00 0.00 0.00 2.18
3888 4685 1.610522 CAGAAACCCACCAAGAGCAAG 59.389 52.381 0.00 0.00 0.00 4.01
3938 4735 5.075858 ACAAACATGAATAGGGTGCAATG 57.924 39.130 0.00 0.00 0.00 2.82
3984 4781 7.608376 TGCACATGCCTTTAAGTAACTATACAA 59.392 33.333 0.49 0.00 41.18 2.41
4188 4992 0.884704 TCCAAGTCAAACGAGGCAGC 60.885 55.000 0.00 0.00 0.00 5.25
4283 5087 9.832445 TTCTTCATAACTATATCAGGTGGAAAC 57.168 33.333 0.00 0.00 0.00 2.78
4315 5123 5.349543 CCAATTGGTATTTCTTGAAGCTTGC 59.650 40.000 16.90 0.00 0.00 4.01
4346 5154 3.573598 CAAAATACATGCGTCTTTGCCA 58.426 40.909 0.00 0.00 0.00 4.92
4360 5168 3.128764 GGGTAGGCTGAGTTGCAAAATAC 59.871 47.826 0.00 0.00 34.04 1.89
4362 5170 2.171003 GGGTAGGCTGAGTTGCAAAAT 58.829 47.619 0.00 0.00 34.04 1.82
4443 5251 7.152645 TCTGGTGTTAGACAATCACTTAAGTC 58.847 38.462 4.77 0.00 33.30 3.01
4528 5336 7.977789 TTAATGAGCACTCAGAAATGTGTTA 57.022 32.000 6.50 0.00 43.61 2.41
4589 5400 3.846383 GCGCAGAAAGAGTCTTTCAACAC 60.846 47.826 35.55 23.72 32.70 3.32
4712 5524 9.383519 TGGATCATTTTCTACTCAGAATTGTAC 57.616 33.333 0.00 0.00 40.47 2.90
4754 5572 5.764686 TGATGAAAATATCCATGAAGGTCGG 59.235 40.000 0.00 0.00 39.02 4.79
5047 5931 1.271163 TGAGGAAAAACTGTAGGCCCG 60.271 52.381 0.00 0.00 0.00 6.13
5328 6215 5.574830 GGATTCTATTGCGCTACTGATGTAG 59.425 44.000 9.73 0.00 46.59 2.74
5379 6266 7.064016 GCATGAAAGGAAACTACACAAAACAAA 59.936 33.333 0.00 0.00 42.68 2.83
5389 6276 4.457257 AGCAGAAGCATGAAAGGAAACTAC 59.543 41.667 0.00 0.00 45.49 2.73
5390 6277 4.655963 AGCAGAAGCATGAAAGGAAACTA 58.344 39.130 0.00 0.00 45.49 2.24
5391 6278 3.494332 AGCAGAAGCATGAAAGGAAACT 58.506 40.909 0.00 0.00 45.49 2.66
5392 6279 3.930634 AGCAGAAGCATGAAAGGAAAC 57.069 42.857 0.00 0.00 45.49 2.78
5426 6502 6.497259 TCCTCCTGAACAGATACTAACAGTTT 59.503 38.462 3.19 0.00 0.00 2.66
5499 6575 3.007290 TGAGTGCCATACCAGATGATAGC 59.993 47.826 0.00 0.00 0.00 2.97
5520 6596 8.891367 GCAACACTATGCATAATCATCTATTG 57.109 34.615 8.00 5.57 45.70 1.90
5682 6758 7.907389 ACACTTTGAGAGAACATACCTGATTA 58.093 34.615 0.00 0.00 0.00 1.75
5742 6818 6.723977 ACAAAAAGCATAGGGAAGGTATTGAA 59.276 34.615 0.00 0.00 0.00 2.69
5744 6820 6.530019 ACAAAAAGCATAGGGAAGGTATTG 57.470 37.500 0.00 0.00 0.00 1.90
5745 6821 6.723977 TGAACAAAAAGCATAGGGAAGGTATT 59.276 34.615 0.00 0.00 0.00 1.89
5783 6859 6.364706 GCTGATGCTACATATGACAGACTTAC 59.635 42.308 10.38 0.00 36.03 2.34
5808 6886 1.410004 TTAGTGGATAGACTGGGGCG 58.590 55.000 0.00 0.00 0.00 6.13
5942 7020 0.107703 TTCCTTGGTCCATAGCAGCG 60.108 55.000 0.00 0.00 33.93 5.18
6049 7127 6.171921 CCAGACAGAGAGTTCAATGATTCTT 58.828 40.000 0.41 0.00 0.00 2.52
6110 7188 4.100189 AGAATATCGACAAGGAGTTCCCAG 59.900 45.833 0.00 0.00 37.41 4.45
6165 7243 1.403679 TGAAAGAACTTTGGGTGCACG 59.596 47.619 11.45 0.00 32.11 5.34
6376 7455 1.078848 AGCTTACCGGCTTCAGCAG 60.079 57.895 15.00 0.00 44.36 4.24
6454 7535 0.252479 ATGCCCTGAGAGCACAAGAG 59.748 55.000 0.00 0.00 44.40 2.85
6537 7618 7.925483 ACATGCAGCAACAAGATAACTTAAAAA 59.075 29.630 0.00 0.00 34.70 1.94
6564 7645 3.695556 CACCATTAGATGCAACACATGGA 59.304 43.478 23.28 0.00 39.84 3.41
6568 7649 2.488937 CAGCACCATTAGATGCAACACA 59.511 45.455 0.00 0.00 44.59 3.72
6570 7651 2.794103 ACAGCACCATTAGATGCAACA 58.206 42.857 0.00 0.00 44.59 3.33
6619 7703 1.635487 AGATTTCCCTGCTGCCAACTA 59.365 47.619 0.00 0.00 0.00 2.24
6622 7706 0.112995 ACAGATTTCCCTGCTGCCAA 59.887 50.000 0.00 0.00 37.68 4.52
6810 7897 5.799936 ACAAACAAACTTGTCAGACAATTCG 59.200 36.000 16.53 7.86 41.31 3.34
6948 8035 2.185867 GCACCCGCCGAACTCATA 59.814 61.111 0.00 0.00 0.00 2.15
6999 8086 1.069978 TCATATTCGCCATCTTCCGCA 59.930 47.619 0.00 0.00 0.00 5.69
7136 8223 7.575414 TCAACAAAGTACCTGAAAGCATTAA 57.425 32.000 0.00 0.00 0.00 1.40
7158 8245 0.106918 ACCAGGCAAGTTTCCGTTCA 60.107 50.000 0.00 0.00 0.00 3.18
7384 8471 2.654912 GGCAACCGACTGAACGACG 61.655 63.158 0.00 0.00 35.09 5.12
7408 8495 0.955428 GAGGAACATTCAGCACGGCA 60.955 55.000 0.00 0.00 0.00 5.69
7432 8519 6.547141 CCCAATCCTTAAACAGAAGCATCATA 59.453 38.462 0.00 0.00 0.00 2.15
7503 8590 8.348507 GGCGTATAACAGTCTACTAAATACAGT 58.651 37.037 0.00 0.00 0.00 3.55
7505 8592 7.355017 CGGCGTATAACAGTCTACTAAATACA 58.645 38.462 0.00 0.00 0.00 2.29
7663 8887 3.396560 TGAACATGTGAAGCAGACAGAG 58.603 45.455 0.00 0.00 0.00 3.35
7667 8891 2.498167 ACCTGAACATGTGAAGCAGAC 58.502 47.619 15.65 0.00 0.00 3.51
7713 8937 2.571206 GAACGAGTTCAATCCAAACGC 58.429 47.619 10.75 0.00 39.31 4.84
7730 8954 4.222114 CTGACAAAAAGAAGCATCGGAAC 58.778 43.478 0.00 0.00 0.00 3.62
7733 8957 2.589014 GCTGACAAAAAGAAGCATCGG 58.411 47.619 0.00 0.00 35.69 4.18
7745 9389 2.554636 CGCTGGCAAGGCTGACAAA 61.555 57.895 4.73 0.00 41.21 2.83
7771 9415 0.729140 CGCCAAGAAACATTCGGTGC 60.729 55.000 0.00 0.00 34.02 5.01
7778 9422 1.609208 AGCAAGACGCCAAGAAACAT 58.391 45.000 0.00 0.00 44.04 2.71
7779 9423 1.065401 CAAGCAAGACGCCAAGAAACA 59.935 47.619 0.00 0.00 44.04 2.83
7781 9425 0.667993 CCAAGCAAGACGCCAAGAAA 59.332 50.000 0.00 0.00 44.04 2.52
7782 9426 0.465460 ACCAAGCAAGACGCCAAGAA 60.465 50.000 0.00 0.00 44.04 2.52
7784 9428 0.798776 CTACCAAGCAAGACGCCAAG 59.201 55.000 0.00 0.00 44.04 3.61
7787 9431 0.320421 TCACTACCAAGCAAGACGCC 60.320 55.000 0.00 0.00 44.04 5.68
7789 9433 2.148916 TGTCACTACCAAGCAAGACG 57.851 50.000 0.00 0.00 0.00 4.18
7790 9434 3.437049 GGAATGTCACTACCAAGCAAGAC 59.563 47.826 0.00 0.00 0.00 3.01
7792 9436 2.749621 GGGAATGTCACTACCAAGCAAG 59.250 50.000 0.00 0.00 0.00 4.01
7793 9437 2.375174 AGGGAATGTCACTACCAAGCAA 59.625 45.455 0.00 0.00 0.00 3.91
7794 9438 1.985159 AGGGAATGTCACTACCAAGCA 59.015 47.619 0.00 0.00 0.00 3.91
7795 9439 2.789409 AGGGAATGTCACTACCAAGC 57.211 50.000 0.00 0.00 0.00 4.01
7796 9440 4.256920 CAGAAGGGAATGTCACTACCAAG 58.743 47.826 0.00 0.00 24.29 3.61
7797 9441 3.009033 CCAGAAGGGAATGTCACTACCAA 59.991 47.826 0.00 0.00 40.01 3.67
7798 9442 2.571653 CCAGAAGGGAATGTCACTACCA 59.428 50.000 0.00 0.00 40.01 3.25
7799 9443 2.572104 ACCAGAAGGGAATGTCACTACC 59.428 50.000 0.00 0.00 41.15 3.18
7801 9445 3.009033 CCAACCAGAAGGGAATGTCACTA 59.991 47.826 0.00 0.00 41.15 2.74
7803 9447 2.162681 CCAACCAGAAGGGAATGTCAC 58.837 52.381 0.00 0.00 41.15 3.67
7842 11415 7.008628 CGAACATCCTTGCACAAAATATCTTTC 59.991 37.037 0.00 0.00 0.00 2.62
7849 11422 2.890311 TCCGAACATCCTTGCACAAAAT 59.110 40.909 0.00 0.00 0.00 1.82
7918 11491 5.668558 ACTACAATGTTCTGTTCGGAAAC 57.331 39.130 0.00 0.00 35.85 2.78
7991 11566 2.333389 AGCGTATGTACATAGCTCGC 57.667 50.000 28.34 28.34 36.89 5.03
8008 11583 4.562789 GGAAATTAACGCCATTTCAGAAGC 59.437 41.667 13.55 0.00 40.88 3.86
8009 11584 5.708948 TGGAAATTAACGCCATTTCAGAAG 58.291 37.500 13.55 0.00 40.88 2.85
8206 11781 9.651718 GATCATTTTATGTCGGTAACTCATTTC 57.348 33.333 0.00 0.00 32.61 2.17
8219 11794 5.288472 GGTGCAAAACGGATCATTTTATGTC 59.712 40.000 6.61 0.85 0.00 3.06
8234 11809 6.695713 AGAGAACGAATTAAAAGGTGCAAAAC 59.304 34.615 0.00 0.00 0.00 2.43
8280 11855 8.859090 ACCAAAGTCAAATGATGTTCTGAAATA 58.141 29.630 0.00 0.00 0.00 1.40
8285 11860 5.009911 TGGACCAAAGTCAAATGATGTTCTG 59.990 40.000 0.00 0.00 45.48 3.02
8328 11904 3.239941 CGTAAATTAGGCGTCTCGTTGAG 59.760 47.826 0.00 0.00 0.00 3.02
8378 11954 4.079253 TGGAGTAGAAGGAACAAAATGGC 58.921 43.478 0.00 0.00 0.00 4.40
8393 11969 1.226323 CGAAGCGACGGTGGAGTAG 60.226 63.158 0.00 0.00 0.00 2.57
8401 11977 3.996744 GACGAGGACGAAGCGACGG 62.997 68.421 9.92 0.00 42.66 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.