Multiple sequence alignment - TraesCS5A01G395100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G395100 chr5A 100.000 4377 0 0 1 4377 590580922 590576546 0.000000e+00 8083
1 TraesCS5A01G395100 chr5D 91.816 1845 58 34 2585 4377 469510201 469508398 0.000000e+00 2484
2 TraesCS5A01G395100 chr5D 88.937 2079 92 38 574 2571 469512422 469510401 0.000000e+00 2438
3 TraesCS5A01G395100 chr5B 88.738 1403 84 33 593 1950 577242179 577240806 0.000000e+00 1648
4 TraesCS5A01G395100 chr5B 90.808 990 44 21 2209 3152 577240407 577239419 0.000000e+00 1280
5 TraesCS5A01G395100 chr5B 90.878 866 36 13 3157 4000 577235196 577234352 0.000000e+00 1122
6 TraesCS5A01G395100 chr5B 96.000 250 7 1 1931 2177 577240794 577240545 1.900000e-108 403
7 TraesCS5A01G395100 chr5B 94.191 241 10 3 4138 4377 577234086 577233849 8.950000e-97 364
8 TraesCS5A01G395100 chr5B 93.750 128 8 0 3997 4124 577234195 577234068 4.470000e-45 193
9 TraesCS5A01G395100 chr5B 82.051 234 20 10 593 811 577244404 577244178 3.480000e-41 180
10 TraesCS5A01G395100 chr7A 96.390 277 9 1 293 569 506291316 506291591 5.160000e-124 455
11 TraesCS5A01G395100 chr7A 96.296 270 9 1 300 568 108819420 108819689 4.020000e-120 442
12 TraesCS5A01G395100 chr7A 96.604 265 8 1 300 564 101271801 101272064 5.200000e-119 438
13 TraesCS5A01G395100 chr7A 94.907 216 11 0 86 301 401405161 401405376 5.420000e-89 339
14 TraesCS5A01G395100 chr7A 94.444 216 12 0 86 301 27383993 27384208 2.520000e-87 333
15 TraesCS5A01G395100 chr7A 94.444 216 12 0 86 301 641431414 641431629 2.520000e-87 333
16 TraesCS5A01G395100 chr2A 97.318 261 7 0 300 560 625961210 625961470 1.120000e-120 444
17 TraesCS5A01G395100 chr2A 94.035 285 13 3 281 561 724498419 724498703 3.130000e-116 429
18 TraesCS5A01G395100 chr2A 92.105 114 9 0 2688 2801 413073135 413073022 1.260000e-35 161
19 TraesCS5A01G395100 chr6B 96.947 262 8 0 299 560 455461041 455461302 1.440000e-119 440
20 TraesCS5A01G395100 chr4A 96.947 262 8 0 299 560 250425041 250425302 1.440000e-119 440
21 TraesCS5A01G395100 chr4A 94.444 216 12 0 86 301 640235846 640236061 2.520000e-87 333
22 TraesCS5A01G395100 chr1A 96.947 262 8 0 299 560 447114613 447114352 1.440000e-119 440
23 TraesCS5A01G395100 chr6A 96.241 266 10 0 299 564 614497197 614497462 1.870000e-118 436
24 TraesCS5A01G395100 chr6A 96.759 216 7 0 86 301 459511969 459511754 1.160000e-95 361
25 TraesCS5A01G395100 chr6A 95.370 216 10 0 86 301 487689608 487689823 1.170000e-90 344
26 TraesCS5A01G395100 chr6A 95.370 216 10 0 86 301 487690128 487689913 1.170000e-90 344
27 TraesCS5A01G395100 chr3A 96.774 217 7 0 85 301 545885234 545885018 3.220000e-96 363
28 TraesCS5A01G395100 chr3A 94.444 216 12 0 86 301 40360355 40360140 2.520000e-87 333
29 TraesCS5A01G395100 chr2B 92.982 114 8 0 2688 2801 386594520 386594633 2.710000e-37 167
30 TraesCS5A01G395100 chr2B 88.095 126 13 2 1997 2121 386593119 386593243 9.810000e-32 148


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G395100 chr5A 590576546 590580922 4376 True 8083.000000 8083 100.000000 1 4377 1 chr5A.!!$R1 4376
1 TraesCS5A01G395100 chr5D 469508398 469512422 4024 True 2461.000000 2484 90.376500 574 4377 2 chr5D.!!$R1 3803
2 TraesCS5A01G395100 chr5B 577239419 577244404 4985 True 877.750000 1648 89.399250 593 3152 4 chr5B.!!$R2 2559
3 TraesCS5A01G395100 chr5B 577233849 577235196 1347 True 559.666667 1122 92.939667 3157 4377 3 chr5B.!!$R1 1220

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 277 0.098376 CGACCTAGGAGCACACGTAC 59.902 60.0 17.98 0.00 0.0 3.67 F
284 285 0.664761 GAGCACACGTACGCCCTATA 59.335 55.0 16.72 0.00 0.0 1.31 F
1049 3304 0.809636 TCTCTCTCTCTCTCGCAGCG 60.810 60.0 9.06 9.06 0.0 5.18 F
1050 3305 0.809636 CTCTCTCTCTCTCGCAGCGA 60.810 60.0 18.39 18.39 0.0 4.93 F
1681 3961 0.814410 TCTCTACTCTACAGCGGCCG 60.814 60.0 24.05 24.05 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 3460 0.110688 CGAACACCGACGACGAGTAA 60.111 55.000 9.28 0.00 42.66 2.24 R
1732 4013 0.307453 TGCGTACGCGTATACGGATT 59.693 50.000 32.65 1.05 46.39 3.01 R
2667 5366 0.376502 GCTCAAGATCGAAAGCCAGC 59.623 55.000 0.00 0.00 0.00 4.85 R
2821 5520 2.672651 CCGTGGAAGTGCATGCCA 60.673 61.111 16.68 1.80 0.00 4.92 R
3630 6354 2.159435 CGTAACCAAAGCCCTATTGCAC 60.159 50.000 0.00 0.00 0.00 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 6.780706 ACGAAGTAAATGTCAAGTTAGGTG 57.219 37.500 0.00 0.00 41.94 4.00
28 29 6.518493 ACGAAGTAAATGTCAAGTTAGGTGA 58.482 36.000 0.00 0.00 41.94 4.02
29 30 6.423001 ACGAAGTAAATGTCAAGTTAGGTGAC 59.577 38.462 0.00 0.00 41.94 3.67
30 31 6.399669 CGAAGTAAATGTCAAGTTAGGTGACG 60.400 42.308 0.57 0.00 46.89 4.35
31 32 4.689345 AGTAAATGTCAAGTTAGGTGACGC 59.311 41.667 0.57 0.00 46.89 5.19
32 33 2.831685 ATGTCAAGTTAGGTGACGCA 57.168 45.000 0.57 0.00 46.89 5.24
33 34 2.605837 TGTCAAGTTAGGTGACGCAA 57.394 45.000 0.57 0.00 46.89 4.85
34 35 2.907634 TGTCAAGTTAGGTGACGCAAA 58.092 42.857 0.57 0.00 46.89 3.68
35 36 3.472652 TGTCAAGTTAGGTGACGCAAAT 58.527 40.909 0.57 0.00 46.89 2.32
36 37 3.880490 TGTCAAGTTAGGTGACGCAAATT 59.120 39.130 0.57 0.00 46.89 1.82
37 38 4.336993 TGTCAAGTTAGGTGACGCAAATTT 59.663 37.500 0.57 0.00 46.89 1.82
38 39 5.527951 TGTCAAGTTAGGTGACGCAAATTTA 59.472 36.000 0.00 0.00 46.89 1.40
39 40 6.205853 TGTCAAGTTAGGTGACGCAAATTTAT 59.794 34.615 0.00 0.00 46.89 1.40
40 41 7.388224 TGTCAAGTTAGGTGACGCAAATTTATA 59.612 33.333 0.00 0.00 46.89 0.98
41 42 8.395633 GTCAAGTTAGGTGACGCAAATTTATAT 58.604 33.333 0.00 0.00 36.35 0.86
42 43 8.952278 TCAAGTTAGGTGACGCAAATTTATATT 58.048 29.630 0.00 0.00 0.00 1.28
43 44 9.567848 CAAGTTAGGTGACGCAAATTTATATTT 57.432 29.630 0.00 0.00 34.29 1.40
45 46 9.783256 AGTTAGGTGACGCAAATTTATATTTTC 57.217 29.630 0.00 0.00 31.63 2.29
46 47 9.562583 GTTAGGTGACGCAAATTTATATTTTCA 57.437 29.630 0.00 0.00 31.63 2.69
48 49 8.856490 AGGTGACGCAAATTTATATTTTCATC 57.144 30.769 0.00 0.00 31.63 2.92
49 50 8.465999 AGGTGACGCAAATTTATATTTTCATCA 58.534 29.630 0.00 0.00 31.63 3.07
50 51 9.081997 GGTGACGCAAATTTATATTTTCATCAA 57.918 29.630 0.00 0.00 31.63 2.57
72 73 9.930693 ATCAAAGTTTAAACACTAAACCAAACA 57.069 25.926 20.06 0.00 37.96 2.83
73 74 9.930693 TCAAAGTTTAAACACTAAACCAAACAT 57.069 25.926 20.06 0.00 37.96 2.71
75 76 8.623310 AAGTTTAAACACTAAACCAAACATCG 57.377 30.769 20.06 0.00 37.96 3.84
76 77 7.987649 AGTTTAAACACTAAACCAAACATCGA 58.012 30.769 20.06 0.00 37.96 3.59
77 78 8.126700 AGTTTAAACACTAAACCAAACATCGAG 58.873 33.333 20.06 0.00 37.96 4.04
78 79 7.789273 TTAAACACTAAACCAAACATCGAGA 57.211 32.000 0.00 0.00 0.00 4.04
79 80 5.924475 AACACTAAACCAAACATCGAGAG 57.076 39.130 0.00 0.00 0.00 3.20
80 81 3.746492 ACACTAAACCAAACATCGAGAGC 59.254 43.478 0.00 0.00 0.00 4.09
81 82 3.745975 CACTAAACCAAACATCGAGAGCA 59.254 43.478 0.00 0.00 0.00 4.26
82 83 4.213270 CACTAAACCAAACATCGAGAGCAA 59.787 41.667 0.00 0.00 0.00 3.91
83 84 5.003804 ACTAAACCAAACATCGAGAGCAAT 58.996 37.500 0.00 0.00 0.00 3.56
84 85 4.425577 AAACCAAACATCGAGAGCAATC 57.574 40.909 0.00 0.00 0.00 2.67
85 86 3.340814 ACCAAACATCGAGAGCAATCT 57.659 42.857 0.00 0.00 0.00 2.40
86 87 4.471904 ACCAAACATCGAGAGCAATCTA 57.528 40.909 0.00 0.00 0.00 1.98
87 88 4.184629 ACCAAACATCGAGAGCAATCTAC 58.815 43.478 0.00 0.00 0.00 2.59
88 89 4.081420 ACCAAACATCGAGAGCAATCTACT 60.081 41.667 0.00 0.00 0.00 2.57
89 90 5.127194 ACCAAACATCGAGAGCAATCTACTA 59.873 40.000 0.00 0.00 0.00 1.82
90 91 5.460419 CCAAACATCGAGAGCAATCTACTAC 59.540 44.000 0.00 0.00 0.00 2.73
91 92 4.839668 ACATCGAGAGCAATCTACTACC 57.160 45.455 0.00 0.00 0.00 3.18
92 93 4.465886 ACATCGAGAGCAATCTACTACCT 58.534 43.478 0.00 0.00 0.00 3.08
93 94 4.517453 ACATCGAGAGCAATCTACTACCTC 59.483 45.833 0.00 0.00 0.00 3.85
94 95 3.478509 TCGAGAGCAATCTACTACCTCC 58.521 50.000 0.00 0.00 0.00 4.30
95 96 3.118000 TCGAGAGCAATCTACTACCTCCA 60.118 47.826 0.00 0.00 0.00 3.86
96 97 3.823873 CGAGAGCAATCTACTACCTCCAT 59.176 47.826 0.00 0.00 0.00 3.41
97 98 4.279671 CGAGAGCAATCTACTACCTCCATT 59.720 45.833 0.00 0.00 0.00 3.16
98 99 5.221342 CGAGAGCAATCTACTACCTCCATTT 60.221 44.000 0.00 0.00 0.00 2.32
99 100 6.168270 AGAGCAATCTACTACCTCCATTTC 57.832 41.667 0.00 0.00 0.00 2.17
100 101 5.663106 AGAGCAATCTACTACCTCCATTTCA 59.337 40.000 0.00 0.00 0.00 2.69
101 102 5.923204 AGCAATCTACTACCTCCATTTCAG 58.077 41.667 0.00 0.00 0.00 3.02
102 103 5.426833 AGCAATCTACTACCTCCATTTCAGT 59.573 40.000 0.00 0.00 0.00 3.41
103 104 6.069963 AGCAATCTACTACCTCCATTTCAGTT 60.070 38.462 0.00 0.00 0.00 3.16
104 105 6.599638 GCAATCTACTACCTCCATTTCAGTTT 59.400 38.462 0.00 0.00 0.00 2.66
105 106 7.769044 GCAATCTACTACCTCCATTTCAGTTTA 59.231 37.037 0.00 0.00 0.00 2.01
106 107 9.099454 CAATCTACTACCTCCATTTCAGTTTAC 57.901 37.037 0.00 0.00 0.00 2.01
107 108 7.786046 TCTACTACCTCCATTTCAGTTTACA 57.214 36.000 0.00 0.00 0.00 2.41
108 109 8.197592 TCTACTACCTCCATTTCAGTTTACAA 57.802 34.615 0.00 0.00 0.00 2.41
109 110 8.311836 TCTACTACCTCCATTTCAGTTTACAAG 58.688 37.037 0.00 0.00 0.00 3.16
110 111 6.838382 ACTACCTCCATTTCAGTTTACAAGT 58.162 36.000 0.00 0.00 0.00 3.16
111 112 6.935208 ACTACCTCCATTTCAGTTTACAAGTC 59.065 38.462 0.00 0.00 0.00 3.01
112 113 5.070685 ACCTCCATTTCAGTTTACAAGTCC 58.929 41.667 0.00 0.00 0.00 3.85
113 114 5.163088 ACCTCCATTTCAGTTTACAAGTCCT 60.163 40.000 0.00 0.00 0.00 3.85
114 115 6.043938 ACCTCCATTTCAGTTTACAAGTCCTA 59.956 38.462 0.00 0.00 0.00 2.94
115 116 6.371825 CCTCCATTTCAGTTTACAAGTCCTAC 59.628 42.308 0.00 0.00 0.00 3.18
116 117 5.929992 TCCATTTCAGTTTACAAGTCCTACG 59.070 40.000 0.00 0.00 0.00 3.51
117 118 5.390567 CCATTTCAGTTTACAAGTCCTACGC 60.391 44.000 0.00 0.00 0.00 4.42
118 119 2.937591 TCAGTTTACAAGTCCTACGCG 58.062 47.619 3.53 3.53 0.00 6.01
119 120 2.294233 TCAGTTTACAAGTCCTACGCGT 59.706 45.455 19.17 19.17 0.00 6.01
120 121 3.501828 TCAGTTTACAAGTCCTACGCGTA 59.498 43.478 19.40 19.40 0.00 4.42
121 122 4.156556 TCAGTTTACAAGTCCTACGCGTAT 59.843 41.667 20.91 5.41 0.00 3.06
122 123 5.353956 TCAGTTTACAAGTCCTACGCGTATA 59.646 40.000 20.91 8.44 0.00 1.47
123 124 5.453587 CAGTTTACAAGTCCTACGCGTATAC 59.546 44.000 20.91 19.74 0.00 1.47
124 125 4.552166 TTACAAGTCCTACGCGTATACC 57.448 45.455 20.91 10.04 0.00 2.73
125 126 2.648059 ACAAGTCCTACGCGTATACCT 58.352 47.619 20.91 12.19 0.00 3.08
126 127 3.808728 ACAAGTCCTACGCGTATACCTA 58.191 45.455 20.91 0.00 0.00 3.08
127 128 3.812053 ACAAGTCCTACGCGTATACCTAG 59.188 47.826 20.91 8.56 0.00 3.02
128 129 4.060900 CAAGTCCTACGCGTATACCTAGA 58.939 47.826 20.91 7.23 0.00 2.43
129 130 4.550076 AGTCCTACGCGTATACCTAGAT 57.450 45.455 20.91 2.47 0.00 1.98
130 131 4.904241 AGTCCTACGCGTATACCTAGATT 58.096 43.478 20.91 4.40 0.00 2.40
131 132 4.694509 AGTCCTACGCGTATACCTAGATTG 59.305 45.833 20.91 3.59 0.00 2.67
132 133 3.438087 TCCTACGCGTATACCTAGATTGC 59.562 47.826 20.91 0.00 0.00 3.56
133 134 2.719426 ACGCGTATACCTAGATTGCC 57.281 50.000 11.67 0.00 0.00 4.52
134 135 1.958579 ACGCGTATACCTAGATTGCCA 59.041 47.619 11.67 0.00 0.00 4.92
135 136 2.363038 ACGCGTATACCTAGATTGCCAA 59.637 45.455 11.67 0.00 0.00 4.52
136 137 3.006537 ACGCGTATACCTAGATTGCCAAT 59.993 43.478 11.67 0.00 0.00 3.16
137 138 3.994392 CGCGTATACCTAGATTGCCAATT 59.006 43.478 0.00 0.00 0.00 2.32
138 139 4.451096 CGCGTATACCTAGATTGCCAATTT 59.549 41.667 0.00 0.00 0.00 1.82
139 140 5.049680 CGCGTATACCTAGATTGCCAATTTT 60.050 40.000 0.00 0.00 0.00 1.82
140 141 6.146510 CGCGTATACCTAGATTGCCAATTTTA 59.853 38.462 0.00 0.00 0.00 1.52
141 142 7.148474 CGCGTATACCTAGATTGCCAATTTTAT 60.148 37.037 0.00 0.00 0.00 1.40
142 143 8.175716 GCGTATACCTAGATTGCCAATTTTATC 58.824 37.037 0.00 0.00 0.00 1.75
143 144 9.214957 CGTATACCTAGATTGCCAATTTTATCA 57.785 33.333 0.00 0.00 0.00 2.15
145 146 6.715347 ACCTAGATTGCCAATTTTATCACC 57.285 37.500 0.00 0.00 0.00 4.02
146 147 6.435164 ACCTAGATTGCCAATTTTATCACCT 58.565 36.000 0.00 0.00 0.00 4.00
147 148 6.897413 ACCTAGATTGCCAATTTTATCACCTT 59.103 34.615 0.00 0.00 0.00 3.50
148 149 7.068716 ACCTAGATTGCCAATTTTATCACCTTC 59.931 37.037 0.00 0.00 0.00 3.46
149 150 6.855763 AGATTGCCAATTTTATCACCTTCA 57.144 33.333 0.00 0.00 0.00 3.02
150 151 7.427989 AGATTGCCAATTTTATCACCTTCAT 57.572 32.000 0.00 0.00 0.00 2.57
151 152 8.537728 AGATTGCCAATTTTATCACCTTCATA 57.462 30.769 0.00 0.00 0.00 2.15
152 153 9.151177 AGATTGCCAATTTTATCACCTTCATAT 57.849 29.630 0.00 0.00 0.00 1.78
202 203 9.063615 ACGGTTTGAAAATAGAACATCTTAAGT 57.936 29.630 1.63 0.00 0.00 2.24
203 204 9.893305 CGGTTTGAAAATAGAACATCTTAAGTT 57.107 29.630 1.63 0.00 0.00 2.66
253 254 9.920946 ATATGACTTGTATTAGGTTGGTCAAAT 57.079 29.630 0.00 0.00 36.16 2.32
254 255 8.650143 ATGACTTGTATTAGGTTGGTCAAATT 57.350 30.769 0.00 0.00 36.16 1.82
255 256 7.881142 TGACTTGTATTAGGTTGGTCAAATTG 58.119 34.615 0.00 0.00 30.81 2.32
256 257 7.721842 TGACTTGTATTAGGTTGGTCAAATTGA 59.278 33.333 0.00 0.00 30.81 2.57
257 258 7.882179 ACTTGTATTAGGTTGGTCAAATTGAC 58.118 34.615 17.16 17.16 46.23 3.18
268 269 2.930682 GTCAAATTGACGACCTAGGAGC 59.069 50.000 17.98 6.03 37.67 4.70
269 270 2.565391 TCAAATTGACGACCTAGGAGCA 59.435 45.455 17.98 8.59 0.00 4.26
270 271 2.673368 CAAATTGACGACCTAGGAGCAC 59.327 50.000 17.98 4.87 0.00 4.40
271 272 1.557099 ATTGACGACCTAGGAGCACA 58.443 50.000 17.98 7.54 0.00 4.57
272 273 0.601558 TTGACGACCTAGGAGCACAC 59.398 55.000 17.98 2.33 0.00 3.82
273 274 1.136984 GACGACCTAGGAGCACACG 59.863 63.158 17.98 12.63 0.00 4.49
274 275 1.584380 GACGACCTAGGAGCACACGT 61.584 60.000 17.98 15.52 35.31 4.49
275 276 0.321919 ACGACCTAGGAGCACACGTA 60.322 55.000 17.98 0.00 0.00 3.57
276 277 0.098376 CGACCTAGGAGCACACGTAC 59.902 60.000 17.98 0.00 0.00 3.67
277 278 0.098376 GACCTAGGAGCACACGTACG 59.902 60.000 17.98 15.01 0.00 3.67
278 279 1.226603 CCTAGGAGCACACGTACGC 60.227 63.158 16.72 0.00 0.00 4.42
279 280 1.226603 CTAGGAGCACACGTACGCC 60.227 63.158 16.72 7.24 0.00 5.68
280 281 2.609183 CTAGGAGCACACGTACGCCC 62.609 65.000 16.72 7.19 0.00 6.13
281 282 4.065281 GGAGCACACGTACGCCCT 62.065 66.667 16.72 6.22 0.00 5.19
282 283 2.703798 GGAGCACACGTACGCCCTA 61.704 63.158 16.72 0.00 0.00 3.53
283 284 1.436336 GAGCACACGTACGCCCTAT 59.564 57.895 16.72 0.00 0.00 2.57
284 285 0.664761 GAGCACACGTACGCCCTATA 59.335 55.000 16.72 0.00 0.00 1.31
285 286 1.066002 GAGCACACGTACGCCCTATAA 59.934 52.381 16.72 0.00 0.00 0.98
286 287 1.477700 AGCACACGTACGCCCTATAAA 59.522 47.619 16.72 0.00 0.00 1.40
287 288 1.589779 GCACACGTACGCCCTATAAAC 59.410 52.381 16.72 0.00 0.00 2.01
288 289 2.736400 GCACACGTACGCCCTATAAACT 60.736 50.000 16.72 0.00 0.00 2.66
289 290 3.489059 GCACACGTACGCCCTATAAACTA 60.489 47.826 16.72 0.00 0.00 2.24
290 291 4.671377 CACACGTACGCCCTATAAACTAA 58.329 43.478 16.72 0.00 0.00 2.24
291 292 4.736793 CACACGTACGCCCTATAAACTAAG 59.263 45.833 16.72 0.00 0.00 2.18
292 293 4.640201 ACACGTACGCCCTATAAACTAAGA 59.360 41.667 16.72 0.00 0.00 2.10
293 294 5.210715 CACGTACGCCCTATAAACTAAGAG 58.789 45.833 16.72 0.00 0.00 2.85
294 295 5.008019 CACGTACGCCCTATAAACTAAGAGA 59.992 44.000 16.72 0.00 0.00 3.10
295 296 5.238214 ACGTACGCCCTATAAACTAAGAGAG 59.762 44.000 16.72 0.00 0.00 3.20
296 297 5.468072 CGTACGCCCTATAAACTAAGAGAGA 59.532 44.000 0.52 0.00 0.00 3.10
297 298 6.347563 CGTACGCCCTATAAACTAAGAGAGAG 60.348 46.154 0.52 0.00 0.00 3.20
298 299 4.828387 ACGCCCTATAAACTAAGAGAGAGG 59.172 45.833 0.00 0.00 0.00 3.69
299 300 4.828387 CGCCCTATAAACTAAGAGAGAGGT 59.172 45.833 0.00 0.00 0.00 3.85
300 301 6.002704 CGCCCTATAAACTAAGAGAGAGGTA 58.997 44.000 0.00 0.00 0.00 3.08
301 302 6.072563 CGCCCTATAAACTAAGAGAGAGGTAC 60.073 46.154 0.00 0.00 0.00 3.34
320 321 7.912056 AGGTACTCCCTTCGTTTTTATTTAC 57.088 36.000 0.00 0.00 42.73 2.01
321 322 7.683578 AGGTACTCCCTTCGTTTTTATTTACT 58.316 34.615 0.00 0.00 42.73 2.24
322 323 7.821359 AGGTACTCCCTTCGTTTTTATTTACTC 59.179 37.037 0.00 0.00 42.73 2.59
323 324 7.821359 GGTACTCCCTTCGTTTTTATTTACTCT 59.179 37.037 0.00 0.00 0.00 3.24
324 325 7.668525 ACTCCCTTCGTTTTTATTTACTCTG 57.331 36.000 0.00 0.00 0.00 3.35
325 326 6.148976 ACTCCCTTCGTTTTTATTTACTCTGC 59.851 38.462 0.00 0.00 0.00 4.26
326 327 5.998981 TCCCTTCGTTTTTATTTACTCTGCA 59.001 36.000 0.00 0.00 0.00 4.41
327 328 6.657541 TCCCTTCGTTTTTATTTACTCTGCAT 59.342 34.615 0.00 0.00 0.00 3.96
328 329 7.825270 TCCCTTCGTTTTTATTTACTCTGCATA 59.175 33.333 0.00 0.00 0.00 3.14
329 330 8.621286 CCCTTCGTTTTTATTTACTCTGCATAT 58.379 33.333 0.00 0.00 0.00 1.78
344 345 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
345 346 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
346 347 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
521 522 7.770801 AAGTTTGTAAAGCTTGATTTTGACC 57.229 32.000 0.00 0.00 45.94 4.02
522 523 6.872920 AGTTTGTAAAGCTTGATTTTGACCA 58.127 32.000 0.00 0.00 31.36 4.02
523 524 7.327214 AGTTTGTAAAGCTTGATTTTGACCAA 58.673 30.769 0.00 0.00 31.36 3.67
524 525 7.821846 AGTTTGTAAAGCTTGATTTTGACCAAA 59.178 29.630 0.00 0.00 31.36 3.28
525 526 7.769272 TTGTAAAGCTTGATTTTGACCAAAG 57.231 32.000 0.00 0.00 0.00 2.77
526 527 5.752955 TGTAAAGCTTGATTTTGACCAAAGC 59.247 36.000 0.00 0.00 0.00 3.51
527 528 4.677673 AAGCTTGATTTTGACCAAAGCT 57.322 36.364 0.00 2.50 31.55 3.74
528 529 5.789643 AAGCTTGATTTTGACCAAAGCTA 57.210 34.783 8.49 0.00 31.55 3.32
529 530 5.789643 AGCTTGATTTTGACCAAAGCTAA 57.210 34.783 6.43 0.00 31.55 3.09
530 531 6.350629 AGCTTGATTTTGACCAAAGCTAAT 57.649 33.333 6.43 0.00 31.55 1.73
531 532 7.466746 AGCTTGATTTTGACCAAAGCTAATA 57.533 32.000 6.43 0.00 31.55 0.98
532 533 8.071177 AGCTTGATTTTGACCAAAGCTAATAT 57.929 30.769 6.43 0.00 31.55 1.28
533 534 9.189156 AGCTTGATTTTGACCAAAGCTAATATA 57.811 29.630 6.43 0.00 31.55 0.86
534 535 9.237846 GCTTGATTTTGACCAAAGCTAATATAC 57.762 33.333 0.00 0.00 31.55 1.47
535 536 9.438291 CTTGATTTTGACCAAAGCTAATATACG 57.562 33.333 0.00 0.00 31.55 3.06
536 537 8.725405 TGATTTTGACCAAAGCTAATATACGA 57.275 30.769 0.00 0.00 31.55 3.43
537 538 9.168451 TGATTTTGACCAAAGCTAATATACGAA 57.832 29.630 0.00 0.00 31.55 3.85
538 539 9.434559 GATTTTGACCAAAGCTAATATACGAAC 57.565 33.333 0.00 0.00 0.00 3.95
539 540 8.556213 TTTTGACCAAAGCTAATATACGAACT 57.444 30.769 0.00 0.00 0.00 3.01
540 541 9.656040 TTTTGACCAAAGCTAATATACGAACTA 57.344 29.630 0.00 0.00 0.00 2.24
541 542 9.656040 TTTGACCAAAGCTAATATACGAACTAA 57.344 29.630 0.00 0.00 0.00 2.24
542 543 9.656040 TTGACCAAAGCTAATATACGAACTAAA 57.344 29.630 0.00 0.00 0.00 1.85
543 544 9.826574 TGACCAAAGCTAATATACGAACTAAAT 57.173 29.630 0.00 0.00 0.00 1.40
555 556 5.868043 ACGAACTAAATAAAAACGGAGGG 57.132 39.130 0.00 0.00 0.00 4.30
556 557 5.550290 ACGAACTAAATAAAAACGGAGGGA 58.450 37.500 0.00 0.00 0.00 4.20
557 558 5.640783 ACGAACTAAATAAAAACGGAGGGAG 59.359 40.000 0.00 0.00 0.00 4.30
558 559 5.640783 CGAACTAAATAAAAACGGAGGGAGT 59.359 40.000 0.00 0.00 0.00 3.85
559 560 6.813152 CGAACTAAATAAAAACGGAGGGAGTA 59.187 38.462 0.00 0.00 0.00 2.59
560 561 7.009907 CGAACTAAATAAAAACGGAGGGAGTAG 59.990 40.741 0.00 0.00 0.00 2.57
561 562 7.250032 ACTAAATAAAAACGGAGGGAGTAGT 57.750 36.000 0.00 0.00 0.00 2.73
562 563 8.366359 ACTAAATAAAAACGGAGGGAGTAGTA 57.634 34.615 0.00 0.00 0.00 1.82
563 564 8.985922 ACTAAATAAAAACGGAGGGAGTAGTAT 58.014 33.333 0.00 0.00 0.00 2.12
569 570 8.716674 AAAAACGGAGGGAGTAGTATATATGA 57.283 34.615 0.00 0.00 0.00 2.15
570 571 7.700022 AAACGGAGGGAGTAGTATATATGAC 57.300 40.000 0.00 0.00 0.00 3.06
571 572 6.639590 ACGGAGGGAGTAGTATATATGACT 57.360 41.667 0.00 0.00 0.00 3.41
572 573 6.652053 ACGGAGGGAGTAGTATATATGACTC 58.348 44.000 14.38 14.38 38.06 3.36
597 601 2.875296 TCATTGCTGGGTGCTAACTTT 58.125 42.857 0.00 0.00 43.37 2.66
621 626 2.436417 CGGCATGGATATTTACCCAGG 58.564 52.381 0.00 0.00 37.30 4.45
744 2981 5.640732 TCGGTAATTCGTTGAGTAAGTACC 58.359 41.667 0.00 0.00 40.94 3.34
756 2993 2.180017 AGTACCGGTACTTGCGCG 59.820 61.111 36.34 0.00 43.35 6.86
771 3008 2.579249 GCGCGCTCTCTCTGTCAG 60.579 66.667 26.67 0.00 0.00 3.51
806 3043 3.299977 TCGTCTGTCACCCACCCG 61.300 66.667 0.00 0.00 0.00 5.28
932 3185 2.158143 ACTCTCCCCAGTTGTTACTCCT 60.158 50.000 0.00 0.00 30.26 3.69
933 3186 3.077088 ACTCTCCCCAGTTGTTACTCCTA 59.923 47.826 0.00 0.00 30.26 2.94
934 3187 3.702045 CTCTCCCCAGTTGTTACTCCTAG 59.298 52.174 0.00 0.00 30.26 3.02
935 3188 3.077088 TCTCCCCAGTTGTTACTCCTAGT 59.923 47.826 0.00 0.00 30.26 2.57
936 3189 3.438183 TCCCCAGTTGTTACTCCTAGTC 58.562 50.000 0.00 0.00 30.26 2.59
937 3190 2.500504 CCCCAGTTGTTACTCCTAGTCC 59.499 54.545 0.00 0.00 30.26 3.85
938 3191 3.442076 CCCAGTTGTTACTCCTAGTCCT 58.558 50.000 0.00 0.00 30.26 3.85
939 3192 4.571362 CCCCAGTTGTTACTCCTAGTCCTA 60.571 50.000 0.00 0.00 30.26 2.94
940 3193 4.645588 CCCAGTTGTTACTCCTAGTCCTAG 59.354 50.000 0.00 0.00 30.26 3.02
941 3194 4.098196 CCAGTTGTTACTCCTAGTCCTAGC 59.902 50.000 0.00 0.00 30.26 3.42
942 3195 4.098196 CAGTTGTTACTCCTAGTCCTAGCC 59.902 50.000 0.00 0.00 30.26 3.93
951 3204 4.182433 GTCCTAGCCCAGCCAGCC 62.182 72.222 0.00 0.00 0.00 4.85
996 3249 2.289195 CGCTACAACTAGAACCAACCCA 60.289 50.000 0.00 0.00 0.00 4.51
1038 3293 2.627945 CAGTGTAGCTCGTCTCTCTCT 58.372 52.381 0.00 0.00 0.00 3.10
1040 3295 2.500098 AGTGTAGCTCGTCTCTCTCTCT 59.500 50.000 0.00 0.00 0.00 3.10
1041 3296 2.864343 GTGTAGCTCGTCTCTCTCTCTC 59.136 54.545 0.00 0.00 0.00 3.20
1042 3297 2.764010 TGTAGCTCGTCTCTCTCTCTCT 59.236 50.000 0.00 0.00 0.00 3.10
1043 3298 2.604046 AGCTCGTCTCTCTCTCTCTC 57.396 55.000 0.00 0.00 0.00 3.20
1044 3299 1.202417 AGCTCGTCTCTCTCTCTCTCG 60.202 57.143 0.00 0.00 0.00 4.04
1045 3300 1.209128 CTCGTCTCTCTCTCTCTCGC 58.791 60.000 0.00 0.00 0.00 5.03
1049 3304 0.809636 TCTCTCTCTCTCTCGCAGCG 60.810 60.000 9.06 9.06 0.00 5.18
1050 3305 0.809636 CTCTCTCTCTCTCGCAGCGA 60.810 60.000 18.39 18.39 0.00 4.93
1051 3306 1.087202 TCTCTCTCTCTCGCAGCGAC 61.087 60.000 15.11 0.00 0.00 5.19
1053 3308 1.062365 CTCTCTCTCGCAGCGACAG 59.938 63.158 15.11 14.19 0.00 3.51
1054 3309 2.579249 CTCTCTCGCAGCGACAGC 60.579 66.667 15.11 0.00 45.58 4.40
1055 3310 4.121669 TCTCTCGCAGCGACAGCC 62.122 66.667 15.11 0.00 46.67 4.85
1103 3364 1.517257 GATCGGAGTGCTCGTGGTG 60.517 63.158 0.00 0.00 0.00 4.17
1104 3365 2.214181 GATCGGAGTGCTCGTGGTGT 62.214 60.000 0.00 0.00 0.00 4.16
1105 3366 2.214181 ATCGGAGTGCTCGTGGTGTC 62.214 60.000 0.00 0.00 0.00 3.67
1238 3499 3.532155 GAGCTCGGCGGATGGTCT 61.532 66.667 7.21 0.00 0.00 3.85
1675 3955 5.092554 TCTCCACACTCTCTACTCTACAG 57.907 47.826 0.00 0.00 0.00 2.74
1681 3961 0.814410 TCTCTACTCTACAGCGGCCG 60.814 60.000 24.05 24.05 0.00 6.13
1703 3984 5.154222 CGCTTGGTTCCTTGTTTATTCTTC 58.846 41.667 0.00 0.00 0.00 2.87
1704 3985 5.048713 CGCTTGGTTCCTTGTTTATTCTTCT 60.049 40.000 0.00 0.00 0.00 2.85
2163 4501 6.785488 TCACTTCACTTGTGTTGCTTATAG 57.215 37.500 0.46 0.00 36.83 1.31
2204 4657 2.601367 GCACACATGGGCAAGGGT 60.601 61.111 0.00 0.00 45.57 4.34
2205 4658 1.304052 GCACACATGGGCAAGGGTA 60.304 57.895 0.00 0.00 45.57 3.69
2206 4659 0.897863 GCACACATGGGCAAGGGTAA 60.898 55.000 0.00 0.00 45.57 2.85
2207 4660 1.626686 CACACATGGGCAAGGGTAAA 58.373 50.000 0.00 0.00 0.00 2.01
2231 4684 2.622546 TTGGTTTCTTATTTCGGCGC 57.377 45.000 0.00 0.00 0.00 6.53
2235 4688 2.095415 GGTTTCTTATTTCGGCGCACTT 60.095 45.455 10.83 0.00 0.00 3.16
2264 4717 4.269183 TCTCTCAAAGAAAACCACAAGCA 58.731 39.130 0.00 0.00 0.00 3.91
2315 4768 6.018994 GCAATTTATAACGATCGACCTTGACT 60.019 38.462 24.34 0.00 0.00 3.41
2316 4769 7.337718 CAATTTATAACGATCGACCTTGACTG 58.662 38.462 24.34 6.80 0.00 3.51
2318 4771 4.920640 ATAACGATCGACCTTGACTGAT 57.079 40.909 24.34 0.00 0.00 2.90
2320 4773 2.092323 ACGATCGACCTTGACTGATCA 58.908 47.619 24.34 0.00 37.64 2.92
2322 4775 3.048501 CGATCGACCTTGACTGATCATG 58.951 50.000 10.26 0.00 37.64 3.07
2365 4827 2.422127 CGGTTGGCGATTAATTTGGACT 59.578 45.455 0.00 0.00 0.00 3.85
2475 4962 3.079578 CCCATGTAGCAGCTATGGAATG 58.920 50.000 21.70 14.75 43.15 2.67
2476 4963 3.497405 CCCATGTAGCAGCTATGGAATGT 60.497 47.826 21.70 0.00 43.15 2.71
2583 5261 5.938279 AGAGTAGATACGGGTGACTAATGA 58.062 41.667 0.00 0.00 0.00 2.57
2613 5291 6.070366 TGAGGATATTTGAGATGAGGCATAGG 60.070 42.308 0.00 0.00 0.00 2.57
2645 5323 5.712152 ATCTTCTTGTGGTGGTTCATTTC 57.288 39.130 0.00 0.00 0.00 2.17
2667 5366 4.081972 TCCATCTTTTCTCTTCTCACCGAG 60.082 45.833 0.00 0.00 0.00 4.63
2944 5643 0.534873 TGAATCCTGCATCGTCGGAA 59.465 50.000 0.00 0.00 0.00 4.30
3067 5769 2.525629 TCCTCGTTGGTGCCTCCA 60.526 61.111 0.00 0.00 45.60 3.86
3134 5836 4.806247 CAGGAGTAAGAAATGGATGACGAC 59.194 45.833 0.00 0.00 0.00 4.34
3204 5916 6.723052 GGATCATCCAAACATATTTCCTCCAT 59.277 38.462 0.00 0.00 36.28 3.41
3330 6042 7.671398 TGAGATTTAAGAAAAATCCAGGAAGCT 59.329 33.333 0.00 0.00 37.36 3.74
3504 6216 7.285401 TGATTAGTTGGCTATTTCCCTCAATTC 59.715 37.037 0.00 0.00 0.00 2.17
3505 6217 5.198602 AGTTGGCTATTTCCCTCAATTCT 57.801 39.130 0.00 0.00 0.00 2.40
3506 6218 5.583932 AGTTGGCTATTTCCCTCAATTCTT 58.416 37.500 0.00 0.00 0.00 2.52
3507 6219 6.019108 AGTTGGCTATTTCCCTCAATTCTTT 58.981 36.000 0.00 0.00 0.00 2.52
3508 6220 6.498303 AGTTGGCTATTTCCCTCAATTCTTTT 59.502 34.615 0.00 0.00 0.00 2.27
3509 6221 6.933514 TGGCTATTTCCCTCAATTCTTTTT 57.066 33.333 0.00 0.00 0.00 1.94
3630 6354 9.889128 AAATATTCCCATCCAACAACTAAATTG 57.111 29.630 0.00 0.00 44.60 2.32
3645 6369 5.723295 ACTAAATTGTGCAATAGGGCTTTG 58.277 37.500 0.00 0.00 34.04 2.77
3746 6476 2.856091 GCGGTTGCATATATCACGAC 57.144 50.000 0.00 0.00 42.15 4.34
3747 6477 2.404215 GCGGTTGCATATATCACGACT 58.596 47.619 0.00 0.00 42.15 4.18
3748 6478 2.800544 GCGGTTGCATATATCACGACTT 59.199 45.455 0.00 0.00 42.15 3.01
3749 6479 3.120991 GCGGTTGCATATATCACGACTTC 60.121 47.826 0.00 0.00 42.15 3.01
3750 6480 4.048504 CGGTTGCATATATCACGACTTCA 58.951 43.478 0.00 0.00 0.00 3.02
3751 6481 4.085055 CGGTTGCATATATCACGACTTCAC 60.085 45.833 0.00 0.00 0.00 3.18
3752 6482 4.085055 GGTTGCATATATCACGACTTCACG 60.085 45.833 0.00 0.00 39.31 4.35
3753 6483 4.561735 TGCATATATCACGACTTCACGA 57.438 40.909 0.00 0.00 37.03 4.35
3782 6512 5.873179 CTGTACTCCAGTATCTAGCTAGC 57.127 47.826 16.35 6.62 36.37 3.42
3783 6513 5.556915 CTGTACTCCAGTATCTAGCTAGCT 58.443 45.833 23.12 23.12 36.37 3.32
3943 6674 9.438228 TTGATTGGACAACAAGTTCGTATAATA 57.562 29.630 0.00 0.00 43.48 0.98
4029 6922 4.050553 GTTGTACCGTGTACTAAAGCACA 58.949 43.478 13.14 0.00 35.51 4.57
4030 6923 4.319139 TGTACCGTGTACTAAAGCACAA 57.681 40.909 13.14 0.00 35.51 3.33
4143 7038 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4144 7039 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4145 7040 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4146 7041 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4147 7042 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4148 7043 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4149 7044 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4150 7045 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4151 7046 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
4152 7047 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
4153 7048 5.523588 TCTCTCTCTCTCTCTCTCTCTCTT 58.476 45.833 0.00 0.00 0.00 2.85
4154 7049 5.596361 TCTCTCTCTCTCTCTCTCTCTCTTC 59.404 48.000 0.00 0.00 0.00 2.87
4155 7050 5.523588 TCTCTCTCTCTCTCTCTCTCTTCT 58.476 45.833 0.00 0.00 0.00 2.85
4257 7152 7.618019 TTATGCAGAATTATCTCCCTACTGT 57.382 36.000 0.00 0.00 32.03 3.55
4305 7200 1.198713 GTCTCAGATCAGGGAAGGCA 58.801 55.000 0.00 0.00 0.00 4.75
4350 7246 2.206576 AGGGTTTCCAGCTGATTGAC 57.793 50.000 17.39 8.04 34.83 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.932791 CACCTAACTTGACATTTACTTCGTAAT 58.067 33.333 0.00 0.00 0.00 1.89
2 3 8.143193 TCACCTAACTTGACATTTACTTCGTAA 58.857 33.333 0.00 0.00 0.00 3.18
3 4 7.596248 GTCACCTAACTTGACATTTACTTCGTA 59.404 37.037 0.00 0.00 42.58 3.43
4 5 6.423001 GTCACCTAACTTGACATTTACTTCGT 59.577 38.462 0.00 0.00 42.58 3.85
5 6 6.399669 CGTCACCTAACTTGACATTTACTTCG 60.400 42.308 3.58 0.00 43.09 3.79
6 7 6.617953 GCGTCACCTAACTTGACATTTACTTC 60.618 42.308 3.58 0.00 43.09 3.01
7 8 5.178809 GCGTCACCTAACTTGACATTTACTT 59.821 40.000 3.58 0.00 43.09 2.24
8 9 4.689345 GCGTCACCTAACTTGACATTTACT 59.311 41.667 3.58 0.00 43.09 2.24
9 10 4.449743 TGCGTCACCTAACTTGACATTTAC 59.550 41.667 3.58 0.00 43.09 2.01
10 11 4.633175 TGCGTCACCTAACTTGACATTTA 58.367 39.130 3.58 0.00 43.09 1.40
11 12 3.472652 TGCGTCACCTAACTTGACATTT 58.527 40.909 3.58 0.00 43.09 2.32
12 13 3.120321 TGCGTCACCTAACTTGACATT 57.880 42.857 3.58 0.00 43.09 2.71
13 14 2.831685 TGCGTCACCTAACTTGACAT 57.168 45.000 3.58 0.00 43.09 3.06
14 15 2.605837 TTGCGTCACCTAACTTGACA 57.394 45.000 3.58 0.00 43.09 3.58
15 16 4.483476 AATTTGCGTCACCTAACTTGAC 57.517 40.909 0.00 0.00 40.10 3.18
16 17 6.811253 ATAAATTTGCGTCACCTAACTTGA 57.189 33.333 0.00 0.00 0.00 3.02
17 18 9.567848 AAATATAAATTTGCGTCACCTAACTTG 57.432 29.630 0.00 0.00 33.97 3.16
19 20 9.783256 GAAAATATAAATTTGCGTCACCTAACT 57.217 29.630 0.00 0.00 35.46 2.24
20 21 9.562583 TGAAAATATAAATTTGCGTCACCTAAC 57.437 29.630 0.00 0.00 33.78 2.34
22 23 9.944663 GATGAAAATATAAATTTGCGTCACCTA 57.055 29.630 0.00 0.00 42.70 3.08
23 24 8.465999 TGATGAAAATATAAATTTGCGTCACCT 58.534 29.630 8.89 0.00 45.66 4.00
24 25 8.627487 TGATGAAAATATAAATTTGCGTCACC 57.373 30.769 8.89 0.00 45.66 4.02
46 47 9.930693 TGTTTGGTTTAGTGTTTAAACTTTGAT 57.069 25.926 18.72 3.81 37.51 2.57
47 48 9.930693 ATGTTTGGTTTAGTGTTTAAACTTTGA 57.069 25.926 18.72 2.09 37.51 2.69
49 50 9.078753 CGATGTTTGGTTTAGTGTTTAAACTTT 57.921 29.630 18.72 9.58 37.51 2.66
50 51 8.460428 TCGATGTTTGGTTTAGTGTTTAAACTT 58.540 29.630 18.72 9.90 37.51 2.66
51 52 7.987649 TCGATGTTTGGTTTAGTGTTTAAACT 58.012 30.769 18.72 2.51 37.51 2.66
52 53 8.124199 TCTCGATGTTTGGTTTAGTGTTTAAAC 58.876 33.333 11.54 11.54 36.86 2.01
53 54 8.211116 TCTCGATGTTTGGTTTAGTGTTTAAA 57.789 30.769 0.00 0.00 0.00 1.52
54 55 7.519328 GCTCTCGATGTTTGGTTTAGTGTTTAA 60.519 37.037 0.00 0.00 0.00 1.52
55 56 6.073440 GCTCTCGATGTTTGGTTTAGTGTTTA 60.073 38.462 0.00 0.00 0.00 2.01
56 57 5.277828 GCTCTCGATGTTTGGTTTAGTGTTT 60.278 40.000 0.00 0.00 0.00 2.83
57 58 4.213482 GCTCTCGATGTTTGGTTTAGTGTT 59.787 41.667 0.00 0.00 0.00 3.32
58 59 3.746492 GCTCTCGATGTTTGGTTTAGTGT 59.254 43.478 0.00 0.00 0.00 3.55
59 60 3.745975 TGCTCTCGATGTTTGGTTTAGTG 59.254 43.478 0.00 0.00 0.00 2.74
60 61 4.002906 TGCTCTCGATGTTTGGTTTAGT 57.997 40.909 0.00 0.00 0.00 2.24
61 62 5.352569 AGATTGCTCTCGATGTTTGGTTTAG 59.647 40.000 0.00 0.00 0.00 1.85
62 63 5.245531 AGATTGCTCTCGATGTTTGGTTTA 58.754 37.500 0.00 0.00 0.00 2.01
63 64 4.074970 AGATTGCTCTCGATGTTTGGTTT 58.925 39.130 0.00 0.00 0.00 3.27
64 65 3.679389 AGATTGCTCTCGATGTTTGGTT 58.321 40.909 0.00 0.00 0.00 3.67
65 66 3.340814 AGATTGCTCTCGATGTTTGGT 57.659 42.857 0.00 0.00 0.00 3.67
66 67 4.437239 AGTAGATTGCTCTCGATGTTTGG 58.563 43.478 0.00 0.00 32.66 3.28
67 68 5.460419 GGTAGTAGATTGCTCTCGATGTTTG 59.540 44.000 0.00 0.00 32.66 2.93
68 69 5.361285 AGGTAGTAGATTGCTCTCGATGTTT 59.639 40.000 0.00 0.00 32.66 2.83
69 70 4.890581 AGGTAGTAGATTGCTCTCGATGTT 59.109 41.667 0.00 0.00 32.66 2.71
70 71 4.465886 AGGTAGTAGATTGCTCTCGATGT 58.534 43.478 0.00 0.00 32.66 3.06
71 72 4.083003 GGAGGTAGTAGATTGCTCTCGATG 60.083 50.000 0.00 0.00 32.66 3.84
72 73 4.076394 GGAGGTAGTAGATTGCTCTCGAT 58.924 47.826 0.00 0.00 32.66 3.59
73 74 3.118000 TGGAGGTAGTAGATTGCTCTCGA 60.118 47.826 0.00 0.00 32.66 4.04
74 75 3.215151 TGGAGGTAGTAGATTGCTCTCG 58.785 50.000 0.00 0.00 32.66 4.04
75 76 5.799827 AATGGAGGTAGTAGATTGCTCTC 57.200 43.478 0.00 0.00 32.66 3.20
76 77 5.663106 TGAAATGGAGGTAGTAGATTGCTCT 59.337 40.000 0.00 0.00 35.39 4.09
77 78 5.918608 TGAAATGGAGGTAGTAGATTGCTC 58.081 41.667 0.00 0.00 0.00 4.26
78 79 5.426833 ACTGAAATGGAGGTAGTAGATTGCT 59.573 40.000 0.00 0.00 0.00 3.91
79 80 5.675538 ACTGAAATGGAGGTAGTAGATTGC 58.324 41.667 0.00 0.00 0.00 3.56
80 81 9.099454 GTAAACTGAAATGGAGGTAGTAGATTG 57.901 37.037 0.00 0.00 0.00 2.67
81 82 8.822805 TGTAAACTGAAATGGAGGTAGTAGATT 58.177 33.333 0.00 0.00 0.00 2.40
82 83 8.375493 TGTAAACTGAAATGGAGGTAGTAGAT 57.625 34.615 0.00 0.00 0.00 1.98
83 84 7.786046 TGTAAACTGAAATGGAGGTAGTAGA 57.214 36.000 0.00 0.00 0.00 2.59
84 85 8.095169 ACTTGTAAACTGAAATGGAGGTAGTAG 58.905 37.037 0.00 0.00 0.00 2.57
85 86 7.970102 ACTTGTAAACTGAAATGGAGGTAGTA 58.030 34.615 0.00 0.00 0.00 1.82
86 87 6.838382 ACTTGTAAACTGAAATGGAGGTAGT 58.162 36.000 0.00 0.00 0.00 2.73
87 88 6.371825 GGACTTGTAAACTGAAATGGAGGTAG 59.628 42.308 0.00 0.00 0.00 3.18
88 89 6.043938 AGGACTTGTAAACTGAAATGGAGGTA 59.956 38.462 0.00 0.00 0.00 3.08
89 90 5.070685 GGACTTGTAAACTGAAATGGAGGT 58.929 41.667 0.00 0.00 0.00 3.85
90 91 5.316987 AGGACTTGTAAACTGAAATGGAGG 58.683 41.667 0.00 0.00 0.00 4.30
91 92 6.090898 CGTAGGACTTGTAAACTGAAATGGAG 59.909 42.308 0.00 0.00 0.00 3.86
92 93 5.929992 CGTAGGACTTGTAAACTGAAATGGA 59.070 40.000 0.00 0.00 0.00 3.41
93 94 5.390567 GCGTAGGACTTGTAAACTGAAATGG 60.391 44.000 0.00 0.00 0.00 3.16
94 95 5.618561 GCGTAGGACTTGTAAACTGAAATG 58.381 41.667 0.00 0.00 0.00 2.32
95 96 4.387862 CGCGTAGGACTTGTAAACTGAAAT 59.612 41.667 0.00 0.00 0.00 2.17
96 97 3.737266 CGCGTAGGACTTGTAAACTGAAA 59.263 43.478 0.00 0.00 0.00 2.69
97 98 3.243501 ACGCGTAGGACTTGTAAACTGAA 60.244 43.478 11.67 0.00 0.00 3.02
98 99 2.294233 ACGCGTAGGACTTGTAAACTGA 59.706 45.455 11.67 0.00 0.00 3.41
99 100 2.669364 ACGCGTAGGACTTGTAAACTG 58.331 47.619 11.67 0.00 0.00 3.16
100 101 4.708726 ATACGCGTAGGACTTGTAAACT 57.291 40.909 24.78 0.00 0.00 2.66
101 102 4.735338 GGTATACGCGTAGGACTTGTAAAC 59.265 45.833 24.78 6.78 0.00 2.01
102 103 4.640201 AGGTATACGCGTAGGACTTGTAAA 59.360 41.667 24.78 0.00 0.00 2.01
103 104 4.199310 AGGTATACGCGTAGGACTTGTAA 58.801 43.478 24.78 0.00 0.00 2.41
104 105 3.808728 AGGTATACGCGTAGGACTTGTA 58.191 45.455 24.78 7.25 0.00 2.41
105 106 2.648059 AGGTATACGCGTAGGACTTGT 58.352 47.619 24.78 8.30 0.00 3.16
106 107 4.060900 TCTAGGTATACGCGTAGGACTTG 58.939 47.826 24.78 19.54 0.00 3.16
107 108 4.342862 TCTAGGTATACGCGTAGGACTT 57.657 45.455 24.78 21.05 0.00 3.01
108 109 4.550076 ATCTAGGTATACGCGTAGGACT 57.450 45.455 24.78 21.30 0.00 3.85
109 110 4.671250 GCAATCTAGGTATACGCGTAGGAC 60.671 50.000 24.78 22.22 0.00 3.85
110 111 3.438087 GCAATCTAGGTATACGCGTAGGA 59.562 47.826 24.78 12.19 0.00 2.94
111 112 3.427233 GGCAATCTAGGTATACGCGTAGG 60.427 52.174 24.78 9.83 0.00 3.18
112 113 3.189910 TGGCAATCTAGGTATACGCGTAG 59.810 47.826 24.78 11.63 0.00 3.51
113 114 3.148412 TGGCAATCTAGGTATACGCGTA 58.852 45.455 22.94 22.94 0.00 4.42
114 115 1.958579 TGGCAATCTAGGTATACGCGT 59.041 47.619 19.17 19.17 0.00 6.01
115 116 2.717580 TGGCAATCTAGGTATACGCG 57.282 50.000 3.53 3.53 0.00 6.01
116 117 5.941948 AAATTGGCAATCTAGGTATACGC 57.058 39.130 14.04 0.00 0.00 4.42
117 118 9.214957 TGATAAAATTGGCAATCTAGGTATACG 57.785 33.333 14.04 0.00 0.00 3.06
119 120 9.515226 GGTGATAAAATTGGCAATCTAGGTATA 57.485 33.333 14.04 0.41 0.00 1.47
120 121 8.227507 AGGTGATAAAATTGGCAATCTAGGTAT 58.772 33.333 14.04 6.93 0.00 2.73
121 122 7.582719 AGGTGATAAAATTGGCAATCTAGGTA 58.417 34.615 14.04 2.41 0.00 3.08
122 123 6.435164 AGGTGATAAAATTGGCAATCTAGGT 58.565 36.000 14.04 0.00 0.00 3.08
123 124 6.966534 AGGTGATAAAATTGGCAATCTAGG 57.033 37.500 14.04 0.00 0.00 3.02
124 125 7.999679 TGAAGGTGATAAAATTGGCAATCTAG 58.000 34.615 14.04 0.00 0.00 2.43
125 126 7.953005 TGAAGGTGATAAAATTGGCAATCTA 57.047 32.000 14.04 8.66 0.00 1.98
126 127 6.855763 TGAAGGTGATAAAATTGGCAATCT 57.144 33.333 14.04 6.60 0.00 2.40
176 177 9.063615 ACTTAAGATGTTCTATTTTCAAACCGT 57.936 29.630 10.09 0.00 0.00 4.83
177 178 9.893305 AACTTAAGATGTTCTATTTTCAAACCG 57.107 29.630 10.09 0.00 0.00 4.44
227 228 9.920946 ATTTGACCAACCTAATACAAGTCATAT 57.079 29.630 0.00 0.00 33.21 1.78
228 229 9.747898 AATTTGACCAACCTAATACAAGTCATA 57.252 29.630 0.00 0.00 33.21 2.15
229 230 8.522830 CAATTTGACCAACCTAATACAAGTCAT 58.477 33.333 0.00 0.00 33.21 3.06
230 231 7.721842 TCAATTTGACCAACCTAATACAAGTCA 59.278 33.333 0.00 0.00 0.00 3.41
231 232 8.021396 GTCAATTTGACCAACCTAATACAAGTC 58.979 37.037 17.07 0.00 41.37 3.01
232 233 7.308348 CGTCAATTTGACCAACCTAATACAAGT 60.308 37.037 20.87 0.00 44.20 3.16
233 234 7.021196 CGTCAATTTGACCAACCTAATACAAG 58.979 38.462 20.87 1.46 44.20 3.16
234 235 6.711194 TCGTCAATTTGACCAACCTAATACAA 59.289 34.615 20.87 0.00 44.20 2.41
235 236 6.148150 GTCGTCAATTTGACCAACCTAATACA 59.852 38.462 20.87 0.00 44.20 2.29
236 237 6.540205 GTCGTCAATTTGACCAACCTAATAC 58.460 40.000 20.87 5.03 44.20 1.89
237 238 6.730960 GTCGTCAATTTGACCAACCTAATA 57.269 37.500 20.87 0.00 44.20 0.98
238 239 5.622770 GTCGTCAATTTGACCAACCTAAT 57.377 39.130 20.87 0.00 44.20 1.73
247 248 2.930682 GCTCCTAGGTCGTCAATTTGAC 59.069 50.000 17.76 17.76 43.65 3.18
248 249 2.565391 TGCTCCTAGGTCGTCAATTTGA 59.435 45.455 9.08 0.00 0.00 2.69
249 250 2.673368 GTGCTCCTAGGTCGTCAATTTG 59.327 50.000 9.08 0.00 0.00 2.32
250 251 2.301870 TGTGCTCCTAGGTCGTCAATTT 59.698 45.455 9.08 0.00 0.00 1.82
251 252 1.899814 TGTGCTCCTAGGTCGTCAATT 59.100 47.619 9.08 0.00 0.00 2.32
252 253 1.204941 GTGTGCTCCTAGGTCGTCAAT 59.795 52.381 9.08 0.00 0.00 2.57
253 254 0.601558 GTGTGCTCCTAGGTCGTCAA 59.398 55.000 9.08 0.00 0.00 3.18
254 255 1.583495 CGTGTGCTCCTAGGTCGTCA 61.583 60.000 9.08 2.23 0.00 4.35
255 256 1.136984 CGTGTGCTCCTAGGTCGTC 59.863 63.158 9.08 0.00 0.00 4.20
256 257 0.321919 TACGTGTGCTCCTAGGTCGT 60.322 55.000 9.08 12.75 0.00 4.34
257 258 0.098376 GTACGTGTGCTCCTAGGTCG 59.902 60.000 9.08 7.93 0.00 4.79
258 259 0.098376 CGTACGTGTGCTCCTAGGTC 59.902 60.000 9.08 2.70 0.00 3.85
259 260 1.930908 GCGTACGTGTGCTCCTAGGT 61.931 60.000 17.90 0.00 0.00 3.08
260 261 1.226603 GCGTACGTGTGCTCCTAGG 60.227 63.158 17.90 0.82 0.00 3.02
261 262 1.226603 GGCGTACGTGTGCTCCTAG 60.227 63.158 17.90 0.00 0.00 3.02
262 263 2.703798 GGGCGTACGTGTGCTCCTA 61.704 63.158 17.90 0.00 0.00 2.94
263 264 4.065281 GGGCGTACGTGTGCTCCT 62.065 66.667 17.90 0.00 0.00 3.69
264 265 2.012902 ATAGGGCGTACGTGTGCTCC 62.013 60.000 17.90 7.97 29.58 4.70
265 266 0.664761 TATAGGGCGTACGTGTGCTC 59.335 55.000 17.90 9.38 0.00 4.26
266 267 1.105457 TTATAGGGCGTACGTGTGCT 58.895 50.000 17.90 2.24 0.00 4.40
267 268 1.589779 GTTTATAGGGCGTACGTGTGC 59.410 52.381 17.90 0.95 0.00 4.57
268 269 3.155093 AGTTTATAGGGCGTACGTGTG 57.845 47.619 17.90 0.00 0.00 3.82
269 270 4.640201 TCTTAGTTTATAGGGCGTACGTGT 59.360 41.667 17.90 4.29 0.00 4.49
270 271 5.008019 TCTCTTAGTTTATAGGGCGTACGTG 59.992 44.000 17.90 0.00 0.00 4.49
271 272 5.126067 TCTCTTAGTTTATAGGGCGTACGT 58.874 41.667 17.90 0.00 0.00 3.57
272 273 5.468072 TCTCTCTTAGTTTATAGGGCGTACG 59.532 44.000 11.84 11.84 0.00 3.67
273 274 6.072563 CCTCTCTCTTAGTTTATAGGGCGTAC 60.073 46.154 0.00 0.00 0.00 3.67
274 275 6.002704 CCTCTCTCTTAGTTTATAGGGCGTA 58.997 44.000 0.00 0.00 0.00 4.42
275 276 4.828387 CCTCTCTCTTAGTTTATAGGGCGT 59.172 45.833 0.00 0.00 0.00 5.68
276 277 4.828387 ACCTCTCTCTTAGTTTATAGGGCG 59.172 45.833 0.00 0.00 0.00 6.13
277 278 7.005902 AGTACCTCTCTCTTAGTTTATAGGGC 58.994 42.308 0.00 0.00 0.00 5.19
278 279 7.666804 GGAGTACCTCTCTCTTAGTTTATAGGG 59.333 44.444 0.00 0.00 42.40 3.53
279 280 7.666804 GGGAGTACCTCTCTCTTAGTTTATAGG 59.333 44.444 0.00 0.00 40.34 2.57
280 281 8.625786 GGGAGTACCTCTCTCTTAGTTTATAG 57.374 42.308 0.00 0.00 40.34 1.31
297 298 7.821359 AGAGTAAATAAAAACGAAGGGAGTACC 59.179 37.037 0.00 0.00 40.67 3.34
298 299 8.654215 CAGAGTAAATAAAAACGAAGGGAGTAC 58.346 37.037 0.00 0.00 0.00 2.73
299 300 7.332678 GCAGAGTAAATAAAAACGAAGGGAGTA 59.667 37.037 0.00 0.00 0.00 2.59
300 301 6.148976 GCAGAGTAAATAAAAACGAAGGGAGT 59.851 38.462 0.00 0.00 0.00 3.85
301 302 6.148811 TGCAGAGTAAATAAAAACGAAGGGAG 59.851 38.462 0.00 0.00 0.00 4.30
302 303 5.998981 TGCAGAGTAAATAAAAACGAAGGGA 59.001 36.000 0.00 0.00 0.00 4.20
303 304 6.249035 TGCAGAGTAAATAAAAACGAAGGG 57.751 37.500 0.00 0.00 0.00 3.95
320 321 7.264221 ACTTCAGTCAACTCTAATATGCAGAG 58.736 38.462 11.37 11.37 44.28 3.35
321 322 7.175347 ACTTCAGTCAACTCTAATATGCAGA 57.825 36.000 0.00 0.00 0.00 4.26
322 323 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
489 490 6.329496 TCAAGCTTTACAAACTTTGACCAAG 58.671 36.000 8.55 7.77 38.64 3.61
490 491 6.274157 TCAAGCTTTACAAACTTTGACCAA 57.726 33.333 8.55 0.00 0.00 3.67
491 492 5.906113 TCAAGCTTTACAAACTTTGACCA 57.094 34.783 8.55 0.00 0.00 4.02
492 493 7.770801 AAATCAAGCTTTACAAACTTTGACC 57.229 32.000 8.55 0.00 0.00 4.02
493 494 8.868916 TCAAAATCAAGCTTTACAAACTTTGAC 58.131 29.630 8.55 0.00 0.00 3.18
494 495 8.868916 GTCAAAATCAAGCTTTACAAACTTTGA 58.131 29.630 8.55 3.22 0.00 2.69
495 496 8.116136 GGTCAAAATCAAGCTTTACAAACTTTG 58.884 33.333 0.00 0.00 0.00 2.77
496 497 7.821846 TGGTCAAAATCAAGCTTTACAAACTTT 59.178 29.630 0.00 0.00 0.00 2.66
497 498 7.327214 TGGTCAAAATCAAGCTTTACAAACTT 58.673 30.769 0.00 0.00 0.00 2.66
498 499 6.872920 TGGTCAAAATCAAGCTTTACAAACT 58.127 32.000 0.00 0.00 0.00 2.66
499 500 7.532682 TTGGTCAAAATCAAGCTTTACAAAC 57.467 32.000 0.00 0.00 0.00 2.93
500 501 7.201600 GCTTTGGTCAAAATCAAGCTTTACAAA 60.202 33.333 0.00 0.00 0.00 2.83
501 502 6.257630 GCTTTGGTCAAAATCAAGCTTTACAA 59.742 34.615 0.00 0.00 0.00 2.41
502 503 5.752955 GCTTTGGTCAAAATCAAGCTTTACA 59.247 36.000 0.00 0.00 0.00 2.41
503 504 5.985530 AGCTTTGGTCAAAATCAAGCTTTAC 59.014 36.000 0.00 0.00 29.75 2.01
504 505 6.160576 AGCTTTGGTCAAAATCAAGCTTTA 57.839 33.333 0.00 0.00 29.75 1.85
505 506 5.027293 AGCTTTGGTCAAAATCAAGCTTT 57.973 34.783 0.00 0.00 29.75 3.51
506 507 4.677673 AGCTTTGGTCAAAATCAAGCTT 57.322 36.364 0.00 0.00 29.75 3.74
507 508 5.789643 TTAGCTTTGGTCAAAATCAAGCT 57.210 34.783 9.50 9.50 34.43 3.74
508 509 9.237846 GTATATTAGCTTTGGTCAAAATCAAGC 57.762 33.333 0.00 0.00 0.00 4.01
509 510 9.438291 CGTATATTAGCTTTGGTCAAAATCAAG 57.562 33.333 0.00 0.00 0.00 3.02
510 511 9.168451 TCGTATATTAGCTTTGGTCAAAATCAA 57.832 29.630 0.00 0.00 0.00 2.57
511 512 8.725405 TCGTATATTAGCTTTGGTCAAAATCA 57.275 30.769 0.00 0.00 0.00 2.57
512 513 9.434559 GTTCGTATATTAGCTTTGGTCAAAATC 57.565 33.333 0.00 0.00 0.00 2.17
513 514 9.174166 AGTTCGTATATTAGCTTTGGTCAAAAT 57.826 29.630 0.00 0.00 0.00 1.82
514 515 8.556213 AGTTCGTATATTAGCTTTGGTCAAAA 57.444 30.769 0.00 0.00 0.00 2.44
515 516 9.656040 TTAGTTCGTATATTAGCTTTGGTCAAA 57.344 29.630 0.00 0.00 0.00 2.69
516 517 9.656040 TTTAGTTCGTATATTAGCTTTGGTCAA 57.344 29.630 0.00 0.00 0.00 3.18
517 518 9.826574 ATTTAGTTCGTATATTAGCTTTGGTCA 57.173 29.630 0.00 0.00 0.00 4.02
529 530 9.264719 CCCTCCGTTTTTATTTAGTTCGTATAT 57.735 33.333 0.00 0.00 0.00 0.86
530 531 8.474025 TCCCTCCGTTTTTATTTAGTTCGTATA 58.526 33.333 0.00 0.00 0.00 1.47
531 532 7.330262 TCCCTCCGTTTTTATTTAGTTCGTAT 58.670 34.615 0.00 0.00 0.00 3.06
532 533 6.696411 TCCCTCCGTTTTTATTTAGTTCGTA 58.304 36.000 0.00 0.00 0.00 3.43
533 534 5.550290 TCCCTCCGTTTTTATTTAGTTCGT 58.450 37.500 0.00 0.00 0.00 3.85
534 535 5.640783 ACTCCCTCCGTTTTTATTTAGTTCG 59.359 40.000 0.00 0.00 0.00 3.95
535 536 7.821359 ACTACTCCCTCCGTTTTTATTTAGTTC 59.179 37.037 0.00 0.00 0.00 3.01
536 537 7.683578 ACTACTCCCTCCGTTTTTATTTAGTT 58.316 34.615 0.00 0.00 0.00 2.24
537 538 7.250032 ACTACTCCCTCCGTTTTTATTTAGT 57.750 36.000 0.00 0.00 0.00 2.24
543 544 9.812347 TCATATATACTACTCCCTCCGTTTTTA 57.188 33.333 0.00 0.00 0.00 1.52
544 545 8.583296 GTCATATATACTACTCCCTCCGTTTTT 58.417 37.037 0.00 0.00 0.00 1.94
545 546 7.949006 AGTCATATATACTACTCCCTCCGTTTT 59.051 37.037 0.00 0.00 0.00 2.43
546 547 7.468496 AGTCATATATACTACTCCCTCCGTTT 58.532 38.462 0.00 0.00 0.00 3.60
547 548 7.030234 AGTCATATATACTACTCCCTCCGTT 57.970 40.000 0.00 0.00 0.00 4.44
548 549 6.444493 AGAGTCATATATACTACTCCCTCCGT 59.556 42.308 17.02 2.21 39.33 4.69
549 550 6.891388 AGAGTCATATATACTACTCCCTCCG 58.109 44.000 17.02 0.00 39.33 4.63
550 551 8.995577 AGTAGAGTCATATATACTACTCCCTCC 58.004 40.741 17.02 7.67 39.25 4.30
560 561 9.579768 CCAGCAATGAAGTAGAGTCATATATAC 57.420 37.037 0.00 0.00 34.60 1.47
561 562 8.753133 CCCAGCAATGAAGTAGAGTCATATATA 58.247 37.037 0.00 0.00 34.60 0.86
562 563 7.236432 ACCCAGCAATGAAGTAGAGTCATATAT 59.764 37.037 0.00 0.00 34.60 0.86
563 564 6.554982 ACCCAGCAATGAAGTAGAGTCATATA 59.445 38.462 0.00 0.00 34.60 0.86
564 565 5.367937 ACCCAGCAATGAAGTAGAGTCATAT 59.632 40.000 0.00 0.00 34.60 1.78
565 566 4.716784 ACCCAGCAATGAAGTAGAGTCATA 59.283 41.667 0.00 0.00 34.60 2.15
566 567 3.521126 ACCCAGCAATGAAGTAGAGTCAT 59.479 43.478 0.00 0.00 37.31 3.06
567 568 2.906389 ACCCAGCAATGAAGTAGAGTCA 59.094 45.455 0.00 0.00 0.00 3.41
568 569 3.265791 CACCCAGCAATGAAGTAGAGTC 58.734 50.000 0.00 0.00 0.00 3.36
569 570 2.616510 GCACCCAGCAATGAAGTAGAGT 60.617 50.000 0.00 0.00 44.79 3.24
570 571 2.012673 GCACCCAGCAATGAAGTAGAG 58.987 52.381 0.00 0.00 44.79 2.43
571 572 2.113860 GCACCCAGCAATGAAGTAGA 57.886 50.000 0.00 0.00 44.79 2.59
583 584 1.676014 CCGGAGAAAGTTAGCACCCAG 60.676 57.143 0.00 0.00 0.00 4.45
628 633 2.367242 TTGGTATCCCCGGACCCC 60.367 66.667 0.73 0.00 34.58 4.95
629 634 2.913501 GTTGGTATCCCCGGACCC 59.086 66.667 0.73 0.00 34.58 4.46
630 635 2.502577 CGTTGGTATCCCCGGACC 59.497 66.667 0.73 2.18 35.15 4.46
631 636 2.502577 CCGTTGGTATCCCCGGAC 59.497 66.667 0.73 0.00 38.68 4.79
632 637 3.472726 GCCGTTGGTATCCCCGGA 61.473 66.667 0.73 0.00 38.68 5.14
633 638 3.476419 AGCCGTTGGTATCCCCGG 61.476 66.667 0.00 0.00 39.16 5.73
651 656 2.537560 CCAATCATCGGTGCGAGCC 61.538 63.158 0.00 0.00 39.91 4.70
754 2991 2.579249 CTGACAGAGAGAGCGCGC 60.579 66.667 26.66 26.66 0.00 6.86
771 3008 3.414700 CTTGACGCTGGTGACCGC 61.415 66.667 8.11 8.11 0.00 5.68
932 3185 1.762460 GCTGGCTGGGCTAGGACTA 60.762 63.158 0.00 0.00 37.62 2.59
933 3186 3.086600 GCTGGCTGGGCTAGGACT 61.087 66.667 0.00 0.00 37.62 3.85
934 3187 4.182433 GGCTGGCTGGGCTAGGAC 62.182 72.222 0.00 0.00 37.62 3.85
1016 3269 0.736053 GAGAGACGAGCTACACTGGG 59.264 60.000 0.00 0.00 0.00 4.45
1028 3281 0.930310 CTGCGAGAGAGAGAGAGACG 59.070 60.000 0.00 0.00 0.00 4.18
1049 3304 1.392710 TAGCTAGCTTCCGGGCTGTC 61.393 60.000 24.88 6.68 43.01 3.51
1050 3305 1.381327 TAGCTAGCTTCCGGGCTGT 60.381 57.895 24.88 0.00 43.01 4.40
1051 3306 1.365633 CTAGCTAGCTTCCGGGCTG 59.634 63.158 24.88 6.62 43.01 4.85
1053 3308 2.029815 GCTAGCTAGCTTCCGGGC 59.970 66.667 33.71 15.16 45.62 6.13
1195 3456 0.248377 CACCGACGACGAGTAATCCC 60.248 60.000 9.28 0.00 42.66 3.85
1199 3460 0.110688 CGAACACCGACGACGAGTAA 60.111 55.000 9.28 0.00 42.66 2.24
1319 3580 2.022520 CATGATCTCGTCCGACGGA 58.977 57.895 20.35 13.88 42.81 4.69
1368 3629 3.386237 GCTGGAGCAGGAGGACGT 61.386 66.667 0.00 0.00 41.59 4.34
1681 3961 6.152379 CAGAAGAATAAACAAGGAACCAAGC 58.848 40.000 0.00 0.00 0.00 4.01
1703 3984 1.263356 TACGTGAGGAAAGGGGACAG 58.737 55.000 0.00 0.00 0.00 3.51
1704 3985 1.946984 ATACGTGAGGAAAGGGGACA 58.053 50.000 0.00 0.00 0.00 4.02
1732 4013 0.307453 TGCGTACGCGTATACGGATT 59.693 50.000 32.65 1.05 46.39 3.01
1735 4016 0.658244 ACATGCGTACGCGTATACGG 60.658 55.000 32.55 22.18 46.39 4.02
1864 4164 6.757947 TCCGTAAAGAAATACCGGAATTACTG 59.242 38.462 9.46 3.62 30.79 2.74
1867 4167 7.068593 TCTCTCCGTAAAGAAATACCGGAATTA 59.931 37.037 9.46 0.00 32.27 1.40
1891 4191 7.120051 TCTTCAAGATGGTTAGCTAGTACTCT 58.880 38.462 0.00 0.00 0.00 3.24
2022 4360 1.301716 GCTCTTGGTCACGAAGGCA 60.302 57.895 0.00 0.00 0.00 4.75
2199 4652 5.950544 AAGAAACCAAAAGCTTTACCCTT 57.049 34.783 13.10 7.57 0.00 3.95
2200 4653 7.612065 AATAAGAAACCAAAAGCTTTACCCT 57.388 32.000 13.10 1.77 0.00 4.34
2201 4654 7.115805 CGAAATAAGAAACCAAAAGCTTTACCC 59.884 37.037 13.10 0.00 0.00 3.69
2202 4655 7.115805 CCGAAATAAGAAACCAAAAGCTTTACC 59.884 37.037 13.10 0.00 0.00 2.85
2203 4656 7.358931 GCCGAAATAAGAAACCAAAAGCTTTAC 60.359 37.037 13.10 0.81 0.00 2.01
2204 4657 6.643360 GCCGAAATAAGAAACCAAAAGCTTTA 59.357 34.615 13.10 0.00 0.00 1.85
2205 4658 5.465390 GCCGAAATAAGAAACCAAAAGCTTT 59.535 36.000 5.69 5.69 0.00 3.51
2206 4659 4.988540 GCCGAAATAAGAAACCAAAAGCTT 59.011 37.500 0.00 0.00 0.00 3.74
2207 4660 4.556233 GCCGAAATAAGAAACCAAAAGCT 58.444 39.130 0.00 0.00 0.00 3.74
2293 4746 6.802608 TCAGTCAAGGTCGATCGTTATAAAT 58.197 36.000 15.94 0.00 0.00 1.40
2315 4768 7.722285 TCTGATCAAATAGCAATTCCATGATCA 59.278 33.333 13.12 13.12 40.85 2.92
2316 4769 8.107399 TCTGATCAAATAGCAATTCCATGATC 57.893 34.615 0.00 0.00 37.37 2.92
2318 4771 7.523216 GCATCTGATCAAATAGCAATTCCATGA 60.523 37.037 0.00 0.00 0.00 3.07
2320 4773 6.569801 CGCATCTGATCAAATAGCAATTCCAT 60.570 38.462 0.00 0.00 0.00 3.41
2322 4775 5.152097 CGCATCTGATCAAATAGCAATTCC 58.848 41.667 0.00 0.00 0.00 3.01
2323 4776 5.152097 CCGCATCTGATCAAATAGCAATTC 58.848 41.667 0.00 0.00 0.00 2.17
2324 4777 4.581824 ACCGCATCTGATCAAATAGCAATT 59.418 37.500 0.00 0.00 0.00 2.32
2331 4793 1.406539 GCCAACCGCATCTGATCAAAT 59.593 47.619 0.00 0.00 37.47 2.32
2528 5019 4.469945 TGTAGCTACATTGGGTAAGCTCTT 59.530 41.667 22.67 0.00 37.51 2.85
2583 5261 5.543405 CCTCATCTCAAATATCCTCACTCCT 59.457 44.000 0.00 0.00 0.00 3.69
2613 5291 3.057033 ACCACAAGAAGATTGCATGCTTC 60.057 43.478 20.33 13.89 40.54 3.86
2645 5323 4.180057 CTCGGTGAGAAGAGAAAAGATGG 58.820 47.826 0.00 0.00 36.65 3.51
2667 5366 0.376502 GCTCAAGATCGAAAGCCAGC 59.623 55.000 0.00 0.00 0.00 4.85
2821 5520 2.672651 CCGTGGAAGTGCATGCCA 60.673 61.111 16.68 1.80 0.00 4.92
3038 5737 4.039357 CGAGGACGGTGTCTGCGT 62.039 66.667 0.00 0.00 35.72 5.24
3067 5769 3.502211 GTCCCATGTCAAACGAAACATCT 59.498 43.478 0.00 0.00 33.92 2.90
3161 5871 7.917505 GGATGATCCAACTATTTACAAAGCTTG 59.082 37.037 6.60 0.00 36.28 4.01
3200 5912 9.197306 TGCTATAAACTTTAGTCTGTAGATGGA 57.803 33.333 0.00 0.00 0.00 3.41
3236 5948 6.361748 GTGCTCAAAGTGCAAGATTTTAAGAG 59.638 38.462 0.00 0.00 42.41 2.85
3238 5950 6.143438 CAGTGCTCAAAGTGCAAGATTTTAAG 59.857 38.462 0.00 0.00 42.41 1.85
3506 6218 9.023962 ACAATTAGCATATCAGGAAGTCAAAAA 57.976 29.630 0.00 0.00 0.00 1.94
3507 6219 8.579850 ACAATTAGCATATCAGGAAGTCAAAA 57.420 30.769 0.00 0.00 0.00 2.44
3508 6220 8.579850 AACAATTAGCATATCAGGAAGTCAAA 57.420 30.769 0.00 0.00 0.00 2.69
3509 6221 8.461222 CAAACAATTAGCATATCAGGAAGTCAA 58.539 33.333 0.00 0.00 0.00 3.18
3630 6354 2.159435 CGTAACCAAAGCCCTATTGCAC 60.159 50.000 0.00 0.00 0.00 4.57
3709 6434 1.469767 CGCAAGGAATTAAAGCCCTGC 60.470 52.381 9.41 9.41 0.00 4.85
3710 6435 2.566952 CGCAAGGAATTAAAGCCCTG 57.433 50.000 0.00 0.00 0.00 4.45
3823 6553 5.648178 TCATCCATAAATACATGGCATGC 57.352 39.130 26.70 9.90 44.47 4.06
3918 6648 7.915293 ATTATACGAACTTGTTGTCCAATCA 57.085 32.000 0.00 0.00 31.20 2.57
3960 6693 7.460910 TGGAATGGATAGTACATGCATGTATT 58.539 34.615 35.33 32.62 44.25 1.89
4029 6922 5.476945 GTGAAAACTTGGGACAGGATATGTT 59.523 40.000 0.00 0.00 44.17 2.71
4080 6973 9.454859 AGAGAACAAACAGATCTATAAAAAGGG 57.545 33.333 0.00 0.00 28.28 3.95
4143 7038 3.695556 TGCATGTCTGAGAAGAGAGAGAG 59.304 47.826 0.00 0.00 0.00 3.20
4144 7039 3.694926 TGCATGTCTGAGAAGAGAGAGA 58.305 45.455 0.00 0.00 0.00 3.10
4145 7040 4.659111 ATGCATGTCTGAGAAGAGAGAG 57.341 45.455 0.00 0.00 0.00 3.20
4146 7041 5.832060 TGATATGCATGTCTGAGAAGAGAGA 59.168 40.000 22.09 0.00 0.00 3.10
4147 7042 6.086785 TGATATGCATGTCTGAGAAGAGAG 57.913 41.667 22.09 0.00 0.00 3.20
4148 7043 6.667558 ATGATATGCATGTCTGAGAAGAGA 57.332 37.500 22.09 1.41 35.42 3.10
4228 7123 5.071788 AGGGAGATAATTCTGCATAAACGGA 59.928 40.000 0.00 0.00 41.79 4.69
4257 7152 8.845227 GTCATGACTTCAGAGTTCAGATATAGA 58.155 37.037 18.83 0.00 35.88 1.98
4305 7200 2.196595 TGGGTAGCTGCTTGGTTATCT 58.803 47.619 7.79 0.00 0.00 1.98
4350 7246 1.067749 CTCTGCAGGAGAGCATCGG 59.932 63.158 15.13 0.00 44.68 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.