Multiple sequence alignment - TraesCS5A01G394500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G394500 chr5A 100.000 3461 0 0 1 3461 589583058 589586518 0.000000e+00 6392
1 TraesCS5A01G394500 chr5A 95.220 523 21 4 2941 3461 339081021 339080501 0.000000e+00 824
2 TraesCS5A01G394500 chr5A 95.038 524 22 4 2941 3461 365260059 365259537 0.000000e+00 821
3 TraesCS5A01G394500 chr5A 94.971 517 24 2 2941 3455 67195183 67195699 0.000000e+00 809
4 TraesCS5A01G394500 chr5A 79.867 750 139 10 1701 2446 590456174 590456915 3.930000e-149 538
5 TraesCS5A01G394500 chr5A 81.787 582 103 3 1867 2446 590445622 590446202 5.190000e-133 484
6 TraesCS5A01G394500 chr5A 85.593 118 12 5 412 525 247191271 247191155 6.070000e-23 119
7 TraesCS5A01G394500 chr5D 94.810 2216 96 14 670 2876 469305630 469307835 0.000000e+00 3437
8 TraesCS5A01G394500 chr5D 76.515 1452 298 31 1001 2440 469464106 469465526 0.000000e+00 752
9 TraesCS5A01G394500 chr5D 79.003 762 143 15 1688 2439 469480331 469481085 3.990000e-139 505
10 TraesCS5A01G394500 chr5D 88.690 168 17 1 3 168 469304330 469304163 1.630000e-48 204
11 TraesCS5A01G394500 chr5B 92.842 1844 92 25 739 2565 576259569 576261389 0.000000e+00 2638
12 TraesCS5A01G394500 chr5B 79.785 836 158 9 1615 2446 576917015 576917843 6.390000e-167 597
13 TraesCS5A01G394500 chr5B 82.747 597 99 4 1852 2446 576903882 576904476 2.370000e-146 529
14 TraesCS5A01G394500 chr5B 85.646 209 19 1 1 209 576259213 576259410 3.500000e-50 209
15 TraesCS5A01G394500 chr5B 93.860 114 7 0 641 754 576259430 576259543 4.590000e-39 172
16 TraesCS5A01G394500 chr5B 90.526 95 9 0 429 523 661126548 661126642 3.630000e-25 126
17 TraesCS5A01G394500 chr2A 95.220 523 21 4 2941 3461 96717784 96718304 0.000000e+00 824
18 TraesCS5A01G394500 chr2A 95.019 522 24 2 2941 3461 73504387 73503867 0.000000e+00 819
19 TraesCS5A01G394500 chr2A 95.652 92 4 0 522 613 85293396 85293487 7.740000e-32 148
20 TraesCS5A01G394500 chr2A 93.333 90 6 0 522 611 711853421 711853332 2.170000e-27 134
21 TraesCS5A01G394500 chr4A 94.847 524 23 4 2941 3461 133071997 133071475 0.000000e+00 815
22 TraesCS5A01G394500 chr7A 94.837 523 24 3 2941 3461 171799344 171798823 0.000000e+00 813
23 TraesCS5A01G394500 chr7A 93.407 91 6 0 521 611 168808258 168808168 6.030000e-28 135
24 TraesCS5A01G394500 chr7A 93.407 91 6 0 438 528 556151915 556152005 6.030000e-28 135
25 TraesCS5A01G394500 chr7A 85.047 107 14 2 420 526 205175102 205174998 1.310000e-19 108
26 TraesCS5A01G394500 chr6A 95.010 521 21 4 2944 3461 579172481 579171963 0.000000e+00 813
27 TraesCS5A01G394500 chr3A 94.667 525 23 4 2941 3461 575664170 575663647 0.000000e+00 809
28 TraesCS5A01G394500 chr3A 89.691 97 9 1 427 523 443203577 443203672 4.690000e-24 122
29 TraesCS5A01G394500 chr3A 90.110 91 8 1 433 523 712686177 712686266 2.180000e-22 117
30 TraesCS5A01G394500 chrUn 88.494 591 56 7 1975 2565 153252740 153253318 0.000000e+00 704
31 TraesCS5A01G394500 chrUn 90.547 402 33 2 1563 1959 153251300 153251701 8.510000e-146 527
32 TraesCS5A01G394500 chrUn 85.600 125 14 3 2694 2814 153253579 153253703 1.010000e-25 128
33 TraesCS5A01G394500 chr7D 94.624 93 5 0 521 613 575081291 575081199 1.000000e-30 145
34 TraesCS5A01G394500 chr7D 93.407 91 6 0 437 527 412001467 412001377 6.030000e-28 135
35 TraesCS5A01G394500 chr7D 90.526 95 7 2 431 523 33051236 33051142 1.300000e-24 124
36 TraesCS5A01G394500 chr3D 94.505 91 5 0 521 611 379244575 379244485 1.300000e-29 141
37 TraesCS5A01G394500 chr3D 90.323 93 9 0 431 523 347592653 347592745 4.690000e-24 122
38 TraesCS5A01G394500 chr6D 93.548 93 6 0 521 613 327002387 327002295 4.660000e-29 139
39 TraesCS5A01G394500 chr6D 91.753 97 7 1 438 534 385917026 385916931 2.170000e-27 134
40 TraesCS5A01G394500 chr3B 93.548 93 6 0 521 613 498631686 498631778 4.660000e-29 139
41 TraesCS5A01G394500 chr7B 91.837 98 8 0 435 532 458527970 458527873 1.680000e-28 137
42 TraesCS5A01G394500 chr7B 93.548 93 5 1 435 527 731020561 731020470 1.680000e-28 137
43 TraesCS5A01G394500 chr7B 92.391 92 7 0 520 611 81344634 81344543 7.790000e-27 132
44 TraesCS5A01G394500 chr1A 91.837 98 8 0 438 535 69995970 69995873 1.680000e-28 137
45 TraesCS5A01G394500 chr1A 94.318 88 5 0 521 608 516043869 516043956 6.030000e-28 135
46 TraesCS5A01G394500 chr6B 93.333 90 6 0 439 528 13443811 13443722 2.170000e-27 134
47 TraesCS5A01G394500 chr4D 90.722 97 7 2 439 534 483559704 483559799 1.010000e-25 128
48 TraesCS5A01G394500 chr2B 88.679 106 10 2 420 523 583771725 583771830 1.010000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G394500 chr5A 589583058 589586518 3460 False 6392.000000 6392 100.000000 1 3461 1 chr5A.!!$F2 3460
1 TraesCS5A01G394500 chr5A 339080501 339081021 520 True 824.000000 824 95.220000 2941 3461 1 chr5A.!!$R2 520
2 TraesCS5A01G394500 chr5A 365259537 365260059 522 True 821.000000 821 95.038000 2941 3461 1 chr5A.!!$R3 520
3 TraesCS5A01G394500 chr5A 67195183 67195699 516 False 809.000000 809 94.971000 2941 3455 1 chr5A.!!$F1 514
4 TraesCS5A01G394500 chr5A 590456174 590456915 741 False 538.000000 538 79.867000 1701 2446 1 chr5A.!!$F4 745
5 TraesCS5A01G394500 chr5A 590445622 590446202 580 False 484.000000 484 81.787000 1867 2446 1 chr5A.!!$F3 579
6 TraesCS5A01G394500 chr5D 469305630 469307835 2205 False 3437.000000 3437 94.810000 670 2876 1 chr5D.!!$F1 2206
7 TraesCS5A01G394500 chr5D 469464106 469465526 1420 False 752.000000 752 76.515000 1001 2440 1 chr5D.!!$F2 1439
8 TraesCS5A01G394500 chr5D 469480331 469481085 754 False 505.000000 505 79.003000 1688 2439 1 chr5D.!!$F3 751
9 TraesCS5A01G394500 chr5B 576259213 576261389 2176 False 1006.333333 2638 90.782667 1 2565 3 chr5B.!!$F4 2564
10 TraesCS5A01G394500 chr5B 576917015 576917843 828 False 597.000000 597 79.785000 1615 2446 1 chr5B.!!$F2 831
11 TraesCS5A01G394500 chr5B 576903882 576904476 594 False 529.000000 529 82.747000 1852 2446 1 chr5B.!!$F1 594
12 TraesCS5A01G394500 chr2A 96717784 96718304 520 False 824.000000 824 95.220000 2941 3461 1 chr2A.!!$F2 520
13 TraesCS5A01G394500 chr2A 73503867 73504387 520 True 819.000000 819 95.019000 2941 3461 1 chr2A.!!$R1 520
14 TraesCS5A01G394500 chr4A 133071475 133071997 522 True 815.000000 815 94.847000 2941 3461 1 chr4A.!!$R1 520
15 TraesCS5A01G394500 chr7A 171798823 171799344 521 True 813.000000 813 94.837000 2941 3461 1 chr7A.!!$R2 520
16 TraesCS5A01G394500 chr6A 579171963 579172481 518 True 813.000000 813 95.010000 2944 3461 1 chr6A.!!$R1 517
17 TraesCS5A01G394500 chr3A 575663647 575664170 523 True 809.000000 809 94.667000 2941 3461 1 chr3A.!!$R1 520
18 TraesCS5A01G394500 chrUn 153251300 153253703 2403 False 453.000000 704 88.213667 1563 2814 3 chrUn.!!$F1 1251

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
613 614 0.175989 GCTTAGGTGACTTCCCTCCG 59.824 60.0 0.00 0.0 43.67 4.63 F
1525 1579 0.034616 AGACCACTGTGCTCTTGCTC 59.965 55.0 1.29 0.0 40.48 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 1645 0.382515 CTGGATCGTCTCGTTCCTCC 59.617 60.0 16.5 7.78 43.59 4.30 R
2904 4202 0.036875 AGCCTCCACTAACACCAAGC 59.963 55.0 0.0 0.00 0.00 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 8.500837 TTGACAATAAACATTGACGAATTGTC 57.499 30.769 19.75 19.75 46.78 3.18
125 126 3.402110 TCAATGATATGTGCCGGTCATC 58.598 45.455 15.37 6.71 31.35 2.92
167 168 1.011904 CCTCGCGCATCGTTGAATG 60.012 57.895 8.75 0.00 39.67 2.67
185 186 1.226888 GCAGTCGTACCCGTCCATC 60.227 63.158 0.00 0.00 35.01 3.51
192 193 1.705873 GTACCCGTCCATCAGATCCT 58.294 55.000 0.00 0.00 0.00 3.24
196 197 0.678395 CCGTCCATCAGATCCTGAGG 59.322 60.000 0.00 0.00 44.08 3.86
202 203 0.948050 ATCAGATCCTGAGGGACCCT 59.052 55.000 14.79 14.79 44.08 4.34
227 228 3.554692 CGTGCGCGGAAGTGGATC 61.555 66.667 12.87 0.00 45.66 3.36
228 229 3.195698 GTGCGCGGAAGTGGATCC 61.196 66.667 8.83 4.20 45.66 3.36
229 230 3.390521 TGCGCGGAAGTGGATCCT 61.391 61.111 14.23 0.00 43.14 3.24
230 231 2.586357 GCGCGGAAGTGGATCCTC 60.586 66.667 14.23 9.81 43.14 3.71
231 232 3.082579 GCGCGGAAGTGGATCCTCT 62.083 63.158 14.23 12.34 43.14 3.69
232 233 1.735376 GCGCGGAAGTGGATCCTCTA 61.735 60.000 16.52 0.00 43.14 2.43
233 234 0.744874 CGCGGAAGTGGATCCTCTAA 59.255 55.000 16.52 0.00 37.34 2.10
234 235 1.536284 CGCGGAAGTGGATCCTCTAAC 60.536 57.143 16.52 13.01 37.34 2.34
235 236 1.480954 GCGGAAGTGGATCCTCTAACA 59.519 52.381 16.52 0.00 37.34 2.41
236 237 2.103263 GCGGAAGTGGATCCTCTAACAT 59.897 50.000 16.52 1.06 37.34 2.71
237 238 3.722147 CGGAAGTGGATCCTCTAACATG 58.278 50.000 16.52 7.20 37.34 3.21
238 239 3.384789 CGGAAGTGGATCCTCTAACATGA 59.615 47.826 16.52 0.00 37.34 3.07
239 240 4.500545 CGGAAGTGGATCCTCTAACATGAG 60.501 50.000 16.52 1.84 37.34 2.90
258 259 2.698168 GGGGGAAGTCACCTAAGCT 58.302 57.895 0.00 0.00 40.05 3.74
259 260 1.875488 GGGGGAAGTCACCTAAGCTA 58.125 55.000 0.00 0.00 40.05 3.32
260 261 1.485480 GGGGGAAGTCACCTAAGCTAC 59.515 57.143 0.00 0.00 40.05 3.58
261 262 1.136500 GGGGAAGTCACCTAAGCTACG 59.864 57.143 0.00 0.00 36.20 3.51
262 263 1.136500 GGGAAGTCACCTAAGCTACGG 59.864 57.143 0.00 0.00 0.00 4.02
263 264 1.823610 GGAAGTCACCTAAGCTACGGT 59.176 52.381 1.17 1.17 0.00 4.83
267 268 3.050703 CACCTAAGCTACGGTGCAG 57.949 57.895 18.15 0.00 43.59 4.41
268 269 0.530744 CACCTAAGCTACGGTGCAGA 59.469 55.000 18.15 0.00 43.59 4.26
269 270 0.531200 ACCTAAGCTACGGTGCAGAC 59.469 55.000 6.08 0.00 34.99 3.51
270 271 0.818296 CCTAAGCTACGGTGCAGACT 59.182 55.000 4.81 0.00 34.99 3.24
271 272 2.022195 CCTAAGCTACGGTGCAGACTA 58.978 52.381 4.81 0.00 34.99 2.59
272 273 2.033550 CCTAAGCTACGGTGCAGACTAG 59.966 54.545 4.81 0.00 34.99 2.57
273 274 1.546961 AAGCTACGGTGCAGACTAGT 58.453 50.000 0.00 0.00 34.99 2.57
274 275 0.811915 AGCTACGGTGCAGACTAGTG 59.188 55.000 0.00 0.00 34.99 2.74
275 276 0.526662 GCTACGGTGCAGACTAGTGT 59.473 55.000 0.00 0.00 0.00 3.55
276 277 1.741706 GCTACGGTGCAGACTAGTGTA 59.258 52.381 0.00 0.00 0.00 2.90
277 278 2.163010 GCTACGGTGCAGACTAGTGTAA 59.837 50.000 0.00 0.00 0.00 2.41
278 279 3.366679 GCTACGGTGCAGACTAGTGTAAA 60.367 47.826 0.00 0.00 0.00 2.01
279 280 3.738830 ACGGTGCAGACTAGTGTAAAA 57.261 42.857 0.00 0.00 0.00 1.52
280 281 3.387397 ACGGTGCAGACTAGTGTAAAAC 58.613 45.455 0.00 0.00 0.00 2.43
281 282 3.181473 ACGGTGCAGACTAGTGTAAAACA 60.181 43.478 0.00 0.00 0.00 2.83
282 283 3.428870 CGGTGCAGACTAGTGTAAAACAG 59.571 47.826 0.00 0.00 0.00 3.16
283 284 4.628074 GGTGCAGACTAGTGTAAAACAGA 58.372 43.478 0.00 0.00 0.00 3.41
284 285 4.686554 GGTGCAGACTAGTGTAAAACAGAG 59.313 45.833 0.00 0.00 0.00 3.35
285 286 5.509163 GGTGCAGACTAGTGTAAAACAGAGA 60.509 44.000 0.00 0.00 0.00 3.10
286 287 5.983720 GTGCAGACTAGTGTAAAACAGAGAA 59.016 40.000 0.00 0.00 0.00 2.87
287 288 6.144724 GTGCAGACTAGTGTAAAACAGAGAAG 59.855 42.308 0.00 0.00 0.00 2.85
288 289 5.635700 GCAGACTAGTGTAAAACAGAGAAGG 59.364 44.000 0.00 0.00 0.00 3.46
289 290 6.516860 GCAGACTAGTGTAAAACAGAGAAGGA 60.517 42.308 0.00 0.00 0.00 3.36
290 291 7.434492 CAGACTAGTGTAAAACAGAGAAGGAA 58.566 38.462 0.00 0.00 0.00 3.36
291 292 7.926555 CAGACTAGTGTAAAACAGAGAAGGAAA 59.073 37.037 0.00 0.00 0.00 3.13
292 293 8.145122 AGACTAGTGTAAAACAGAGAAGGAAAG 58.855 37.037 0.00 0.00 0.00 2.62
293 294 7.793036 ACTAGTGTAAAACAGAGAAGGAAAGT 58.207 34.615 0.00 0.00 0.00 2.66
294 295 8.265764 ACTAGTGTAAAACAGAGAAGGAAAGTT 58.734 33.333 0.00 0.00 0.00 2.66
295 296 9.760077 CTAGTGTAAAACAGAGAAGGAAAGTTA 57.240 33.333 0.00 0.00 0.00 2.24
296 297 8.434733 AGTGTAAAACAGAGAAGGAAAGTTAC 57.565 34.615 0.00 0.00 0.00 2.50
297 298 7.224167 AGTGTAAAACAGAGAAGGAAAGTTACG 59.776 37.037 0.00 0.00 0.00 3.18
298 299 7.010830 GTGTAAAACAGAGAAGGAAAGTTACGT 59.989 37.037 0.00 0.00 0.00 3.57
299 300 5.986004 AAACAGAGAAGGAAAGTTACGTG 57.014 39.130 0.00 0.00 0.00 4.49
300 301 3.391049 ACAGAGAAGGAAAGTTACGTGC 58.609 45.455 0.00 0.00 0.00 5.34
301 302 3.181469 ACAGAGAAGGAAAGTTACGTGCA 60.181 43.478 0.00 0.00 0.00 4.57
302 303 3.184581 CAGAGAAGGAAAGTTACGTGCAC 59.815 47.826 6.82 6.82 0.00 4.57
303 304 3.128349 GAGAAGGAAAGTTACGTGCACA 58.872 45.455 18.64 0.00 0.00 4.57
304 305 3.131396 AGAAGGAAAGTTACGTGCACAG 58.869 45.455 18.64 12.16 0.00 3.66
305 306 2.614829 AGGAAAGTTACGTGCACAGT 57.385 45.000 18.64 17.29 0.00 3.55
306 307 3.738830 AGGAAAGTTACGTGCACAGTA 57.261 42.857 18.64 16.28 0.00 2.74
307 308 3.650139 AGGAAAGTTACGTGCACAGTAG 58.350 45.455 18.64 2.44 0.00 2.57
308 309 3.069158 AGGAAAGTTACGTGCACAGTAGT 59.931 43.478 18.64 9.00 0.00 2.73
309 310 3.427863 GGAAAGTTACGTGCACAGTAGTC 59.572 47.826 18.64 14.74 0.00 2.59
310 311 3.720949 AAGTTACGTGCACAGTAGTCA 57.279 42.857 18.64 3.06 0.00 3.41
311 312 3.720949 AGTTACGTGCACAGTAGTCAA 57.279 42.857 18.64 4.43 0.00 3.18
312 313 4.049546 AGTTACGTGCACAGTAGTCAAA 57.950 40.909 18.64 4.08 0.00 2.69
313 314 3.800506 AGTTACGTGCACAGTAGTCAAAC 59.199 43.478 18.64 14.62 0.00 2.93
314 315 2.596904 ACGTGCACAGTAGTCAAACT 57.403 45.000 18.64 0.00 0.00 2.66
315 316 3.720949 ACGTGCACAGTAGTCAAACTA 57.279 42.857 18.64 0.00 0.00 2.24
316 317 4.252971 ACGTGCACAGTAGTCAAACTAT 57.747 40.909 18.64 0.00 32.65 2.12
317 318 5.381174 ACGTGCACAGTAGTCAAACTATA 57.619 39.130 18.64 0.00 32.65 1.31
318 319 5.962433 ACGTGCACAGTAGTCAAACTATAT 58.038 37.500 18.64 0.00 32.65 0.86
319 320 5.805486 ACGTGCACAGTAGTCAAACTATATG 59.195 40.000 18.64 0.00 32.65 1.78
320 321 5.805486 CGTGCACAGTAGTCAAACTATATGT 59.195 40.000 18.64 3.47 35.32 2.29
321 322 6.970613 CGTGCACAGTAGTCAAACTATATGTA 59.029 38.462 18.64 0.00 34.10 2.29
322 323 7.648112 CGTGCACAGTAGTCAAACTATATGTAT 59.352 37.037 18.64 0.00 34.10 2.29
323 324 8.969267 GTGCACAGTAGTCAAACTATATGTATC 58.031 37.037 13.17 4.91 34.10 2.24
324 325 8.914011 TGCACAGTAGTCAAACTATATGTATCT 58.086 33.333 7.29 0.00 34.10 1.98
347 348 8.890124 TCTACTATAGCAAGTACTGTACAGAG 57.110 38.462 29.30 13.67 0.00 3.35
348 349 8.484575 TCTACTATAGCAAGTACTGTACAGAGT 58.515 37.037 29.30 18.32 0.00 3.24
349 350 7.941431 ACTATAGCAAGTACTGTACAGAGTT 57.059 36.000 29.30 17.20 0.00 3.01
351 352 8.891720 ACTATAGCAAGTACTGTACAGAGTTAC 58.108 37.037 29.30 19.55 0.00 2.50
352 353 7.941431 ATAGCAAGTACTGTACAGAGTTACT 57.059 36.000 29.30 21.32 0.00 2.24
421 422 9.994432 TTTTGTTTGTATGCCATTTTTGTAAAG 57.006 25.926 0.00 0.00 0.00 1.85
422 423 7.721286 TGTTTGTATGCCATTTTTGTAAAGG 57.279 32.000 0.00 0.00 0.00 3.11
423 424 7.275920 TGTTTGTATGCCATTTTTGTAAAGGT 58.724 30.769 0.00 0.00 0.00 3.50
424 425 8.421784 TGTTTGTATGCCATTTTTGTAAAGGTA 58.578 29.630 0.00 0.00 0.00 3.08
425 426 9.430623 GTTTGTATGCCATTTTTGTAAAGGTAT 57.569 29.630 0.00 0.00 0.00 2.73
433 434 9.797556 GCCATTTTTGTAAAGGTATAAAGTAGG 57.202 33.333 0.00 0.00 0.00 3.18
444 445 7.429374 AGGTATAAAGTAGGTTTGTACTCCC 57.571 40.000 0.00 0.00 40.69 4.30
445 446 7.194761 AGGTATAAAGTAGGTTTGTACTCCCT 58.805 38.462 0.00 0.00 40.69 4.20
446 447 7.344093 AGGTATAAAGTAGGTTTGTACTCCCTC 59.656 40.741 0.00 0.00 40.69 4.30
447 448 7.344093 GGTATAAAGTAGGTTTGTACTCCCTCT 59.656 40.741 0.00 0.00 40.69 3.69
448 449 5.485209 AAAGTAGGTTTGTACTCCCTCTG 57.515 43.478 0.00 0.00 31.73 3.35
449 450 4.129317 AGTAGGTTTGTACTCCCTCTGT 57.871 45.455 0.00 0.00 0.00 3.41
450 451 5.266709 AGTAGGTTTGTACTCCCTCTGTA 57.733 43.478 0.00 0.00 0.00 2.74
451 452 5.648247 AGTAGGTTTGTACTCCCTCTGTAA 58.352 41.667 0.00 0.00 0.00 2.41
452 453 6.080009 AGTAGGTTTGTACTCCCTCTGTAAA 58.920 40.000 0.00 0.00 0.00 2.01
453 454 6.729569 AGTAGGTTTGTACTCCCTCTGTAAAT 59.270 38.462 0.00 0.00 0.00 1.40
454 455 6.449830 AGGTTTGTACTCCCTCTGTAAATT 57.550 37.500 0.00 0.00 0.00 1.82
455 456 7.563724 AGGTTTGTACTCCCTCTGTAAATTA 57.436 36.000 0.00 0.00 0.00 1.40
456 457 7.981142 AGGTTTGTACTCCCTCTGTAAATTAA 58.019 34.615 0.00 0.00 0.00 1.40
457 458 8.612145 AGGTTTGTACTCCCTCTGTAAATTAAT 58.388 33.333 0.00 0.00 0.00 1.40
458 459 9.895138 GGTTTGTACTCCCTCTGTAAATTAATA 57.105 33.333 0.00 0.00 0.00 0.98
466 467 9.360093 CTCCCTCTGTAAATTAATATAAGAGCG 57.640 37.037 9.98 4.77 0.00 5.03
467 468 8.867097 TCCCTCTGTAAATTAATATAAGAGCGT 58.133 33.333 9.98 0.00 0.00 5.07
468 469 9.490379 CCCTCTGTAAATTAATATAAGAGCGTT 57.510 33.333 9.98 0.00 0.00 4.84
541 542 9.657419 AGGGAGTAATTTGCAAATTAATTCAAG 57.343 29.630 34.44 0.00 41.14 3.02
542 543 9.435688 GGGAGTAATTTGCAAATTAATTCAAGT 57.564 29.630 34.44 23.17 41.14 3.16
575 576 9.829507 AGTCTTAATCATATGGAAGTGAAGAAG 57.170 33.333 2.13 0.00 0.00 2.85
576 577 9.050601 GTCTTAATCATATGGAAGTGAAGAAGG 57.949 37.037 2.13 0.00 0.00 3.46
577 578 8.992349 TCTTAATCATATGGAAGTGAAGAAGGA 58.008 33.333 2.13 0.00 0.00 3.36
578 579 9.618890 CTTAATCATATGGAAGTGAAGAAGGAA 57.381 33.333 2.13 0.00 0.00 3.36
579 580 9.973661 TTAATCATATGGAAGTGAAGAAGGAAA 57.026 29.630 2.13 0.00 0.00 3.13
580 581 8.517062 AATCATATGGAAGTGAAGAAGGAAAG 57.483 34.615 2.13 0.00 0.00 2.62
581 582 7.020827 TCATATGGAAGTGAAGAAGGAAAGT 57.979 36.000 2.13 0.00 0.00 2.66
582 583 7.461749 TCATATGGAAGTGAAGAAGGAAAGTT 58.538 34.615 2.13 0.00 0.00 2.66
583 584 8.602424 TCATATGGAAGTGAAGAAGGAAAGTTA 58.398 33.333 2.13 0.00 0.00 2.24
584 585 8.887717 CATATGGAAGTGAAGAAGGAAAGTTAG 58.112 37.037 0.00 0.00 0.00 2.34
585 586 5.621193 TGGAAGTGAAGAAGGAAAGTTAGG 58.379 41.667 0.00 0.00 0.00 2.69
586 587 5.004448 GGAAGTGAAGAAGGAAAGTTAGGG 58.996 45.833 0.00 0.00 0.00 3.53
587 588 5.221864 GGAAGTGAAGAAGGAAAGTTAGGGA 60.222 44.000 0.00 0.00 0.00 4.20
588 589 5.906772 AGTGAAGAAGGAAAGTTAGGGAA 57.093 39.130 0.00 0.00 0.00 3.97
589 590 5.870706 AGTGAAGAAGGAAAGTTAGGGAAG 58.129 41.667 0.00 0.00 0.00 3.46
590 591 5.369993 AGTGAAGAAGGAAAGTTAGGGAAGT 59.630 40.000 0.00 0.00 0.00 3.01
591 592 5.470437 GTGAAGAAGGAAAGTTAGGGAAGTG 59.530 44.000 0.00 0.00 0.00 3.16
592 593 5.132144 TGAAGAAGGAAAGTTAGGGAAGTGT 59.868 40.000 0.00 0.00 0.00 3.55
593 594 6.328148 TGAAGAAGGAAAGTTAGGGAAGTGTA 59.672 38.462 0.00 0.00 0.00 2.90
594 595 6.361768 AGAAGGAAAGTTAGGGAAGTGTAG 57.638 41.667 0.00 0.00 0.00 2.74
595 596 4.554960 AGGAAAGTTAGGGAAGTGTAGC 57.445 45.455 0.00 0.00 0.00 3.58
596 597 4.168883 AGGAAAGTTAGGGAAGTGTAGCT 58.831 43.478 0.00 0.00 0.00 3.32
597 598 4.597940 AGGAAAGTTAGGGAAGTGTAGCTT 59.402 41.667 0.00 0.00 40.76 3.74
598 599 5.783875 AGGAAAGTTAGGGAAGTGTAGCTTA 59.216 40.000 0.00 0.00 37.59 3.09
599 600 6.070710 AGGAAAGTTAGGGAAGTGTAGCTTAG 60.071 42.308 0.00 0.00 37.59 2.18
600 601 5.678955 AAGTTAGGGAAGTGTAGCTTAGG 57.321 43.478 0.00 0.00 37.59 2.69
601 602 4.685807 AGTTAGGGAAGTGTAGCTTAGGT 58.314 43.478 0.00 0.00 37.59 3.08
602 603 4.466726 AGTTAGGGAAGTGTAGCTTAGGTG 59.533 45.833 0.00 0.00 37.59 4.00
603 604 3.185880 AGGGAAGTGTAGCTTAGGTGA 57.814 47.619 0.00 0.00 37.59 4.02
604 605 2.832733 AGGGAAGTGTAGCTTAGGTGAC 59.167 50.000 0.00 0.00 37.59 3.67
606 607 3.261137 GGGAAGTGTAGCTTAGGTGACTT 59.739 47.826 9.42 9.42 43.67 3.01
607 608 4.496360 GGAAGTGTAGCTTAGGTGACTTC 58.504 47.826 20.40 20.40 43.67 3.01
608 609 4.496360 GAAGTGTAGCTTAGGTGACTTCC 58.504 47.826 18.99 8.27 43.67 3.46
609 610 2.832733 AGTGTAGCTTAGGTGACTTCCC 59.167 50.000 0.00 0.00 43.67 3.97
610 611 2.832733 GTGTAGCTTAGGTGACTTCCCT 59.167 50.000 0.00 0.00 43.67 4.20
611 612 3.097614 TGTAGCTTAGGTGACTTCCCTC 58.902 50.000 0.00 0.00 43.67 4.30
612 613 1.574263 AGCTTAGGTGACTTCCCTCC 58.426 55.000 0.00 0.00 43.67 4.30
613 614 0.175989 GCTTAGGTGACTTCCCTCCG 59.824 60.000 0.00 0.00 43.67 4.63
614 615 0.175989 CTTAGGTGACTTCCCTCCGC 59.824 60.000 0.00 0.00 43.67 5.54
615 616 1.601419 TTAGGTGACTTCCCTCCGCG 61.601 60.000 0.00 0.00 43.67 6.46
616 617 4.452733 GGTGACTTCCCTCCGCGG 62.453 72.222 22.12 22.12 0.00 6.46
625 626 2.046314 CCTCCGCGGGTCAACATT 60.046 61.111 27.83 0.00 0.00 2.71
626 627 2.106683 CCTCCGCGGGTCAACATTC 61.107 63.158 27.83 0.00 0.00 2.67
627 628 1.079127 CTCCGCGGGTCAACATTCT 60.079 57.895 27.83 0.00 0.00 2.40
628 629 0.673644 CTCCGCGGGTCAACATTCTT 60.674 55.000 27.83 0.00 0.00 2.52
629 630 0.672401 TCCGCGGGTCAACATTCTTC 60.672 55.000 27.83 0.00 0.00 2.87
630 631 0.673644 CCGCGGGTCAACATTCTTCT 60.674 55.000 20.10 0.00 0.00 2.85
631 632 0.721718 CGCGGGTCAACATTCTTCTC 59.278 55.000 0.00 0.00 0.00 2.87
632 633 1.087501 GCGGGTCAACATTCTTCTCC 58.912 55.000 0.00 0.00 0.00 3.71
633 634 1.739067 CGGGTCAACATTCTTCTCCC 58.261 55.000 0.00 0.00 0.00 4.30
634 635 1.679032 CGGGTCAACATTCTTCTCCCC 60.679 57.143 0.00 0.00 0.00 4.81
635 636 1.341089 GGGTCAACATTCTTCTCCCCC 60.341 57.143 0.00 0.00 0.00 5.40
636 637 1.636003 GGTCAACATTCTTCTCCCCCT 59.364 52.381 0.00 0.00 0.00 4.79
637 638 2.356227 GGTCAACATTCTTCTCCCCCTC 60.356 54.545 0.00 0.00 0.00 4.30
638 639 2.573915 GTCAACATTCTTCTCCCCCTCT 59.426 50.000 0.00 0.00 0.00 3.69
639 640 2.840651 TCAACATTCTTCTCCCCCTCTC 59.159 50.000 0.00 0.00 0.00 3.20
643 644 3.246314 ACATTCTTCTCCCCCTCTCTCTT 60.246 47.826 0.00 0.00 0.00 2.85
645 646 1.719378 TCTTCTCCCCCTCTCTCTTGT 59.281 52.381 0.00 0.00 0.00 3.16
658 659 6.425417 CCCTCTCTCTTGTTCTAGTTGTTTTC 59.575 42.308 0.00 0.00 0.00 2.29
745 746 2.618241 CCACCACGTGATCCAAATATGG 59.382 50.000 19.30 6.29 41.19 2.74
798 839 9.123709 CAATTTCAGTTCGCTATCTCTATCTAC 57.876 37.037 0.00 0.00 0.00 2.59
874 918 2.039974 CCATACGCACAAGCTGCCA 61.040 57.895 0.00 0.00 43.84 4.92
888 935 6.432162 CACAAGCTGCCATACTTATATTCCAT 59.568 38.462 0.00 0.00 0.00 3.41
939 989 1.405661 GGTGGTCGTGATCCTCCTTTC 60.406 57.143 0.00 0.00 36.17 2.62
1218 1269 2.362369 CCACATGGTCTCGCTCCCT 61.362 63.158 0.00 0.00 0.00 4.20
1224 1275 3.063084 GTCTCGCTCCCTGACGGT 61.063 66.667 0.00 0.00 0.00 4.83
1230 1281 1.760875 GCTCCCTGACGGTATGGGA 60.761 63.158 16.59 16.59 46.78 4.37
1299 1350 4.864334 GCCATGCTCGGACCCCTG 62.864 72.222 0.00 0.00 0.00 4.45
1300 1351 3.083349 CCATGCTCGGACCCCTGA 61.083 66.667 0.00 0.00 0.00 3.86
1522 1576 3.062763 CAAGTAGACCACTGTGCTCTTG 58.937 50.000 10.63 10.91 37.63 3.02
1523 1577 1.001406 AGTAGACCACTGTGCTCTTGC 59.999 52.381 10.63 5.42 35.62 4.01
1525 1579 0.034616 AGACCACTGTGCTCTTGCTC 59.965 55.000 1.29 0.00 40.48 4.26
1526 1580 0.034616 GACCACTGTGCTCTTGCTCT 59.965 55.000 1.29 0.00 40.48 4.09
1535 1589 1.221414 GCTCTTGCTCTGTGTCGTTT 58.779 50.000 0.00 0.00 36.03 3.60
1537 1591 2.348966 GCTCTTGCTCTGTGTCGTTTTC 60.349 50.000 0.00 0.00 36.03 2.29
1539 1593 3.123804 TCTTGCTCTGTGTCGTTTTCTC 58.876 45.455 0.00 0.00 0.00 2.87
1559 1618 0.729690 TGACTCAGAGATCGAGTGCG 59.270 55.000 3.79 0.00 43.72 5.34
1607 1672 0.171455 AACGAGACGATCCAGCTGAC 59.829 55.000 17.39 5.37 0.00 3.51
1758 1825 1.594293 CTGCAACACGTTCGAGGGT 60.594 57.895 0.00 0.00 0.00 4.34
1870 1937 2.681778 CAGAGGACCCCGTCTGCT 60.682 66.667 0.00 0.00 44.88 4.24
2060 3156 2.308039 GGTTCGACGCGTTCAAGCT 61.308 57.895 15.53 0.00 34.40 3.74
2253 3349 1.923204 CAGAGCTACATCTGCAACGTC 59.077 52.381 0.00 0.00 40.26 4.34
2310 3408 2.670148 GGCGGTCACCAAGGAGGAT 61.670 63.158 0.00 0.00 41.22 3.24
2322 3420 5.945784 CACCAAGGAGGATATCAAGAACAAA 59.054 40.000 4.83 0.00 41.22 2.83
2330 3428 4.870426 GGATATCAAGAACAAAGTCGAGCA 59.130 41.667 4.83 0.00 0.00 4.26
2412 3510 2.060383 CATCGCAGAGGGAGGGTCA 61.060 63.158 0.00 0.00 43.63 4.02
2446 3544 3.243636 CCTGCTCAAGCTTGTGAAATTGT 60.244 43.478 27.97 0.00 42.66 2.71
2454 3552 7.264221 TCAAGCTTGTGAAATTGTTAACACAT 58.736 30.769 25.19 2.80 41.67 3.21
2476 3577 9.901724 CACATCAATAGTCTTCAAATAACGTAC 57.098 33.333 0.00 0.00 0.00 3.67
2641 3935 6.021153 GCAGAATTTTTCATGTAATCGTGCTC 60.021 38.462 0.00 0.00 0.00 4.26
2662 3956 7.227049 GCTCTAGGCACTCTCTTATTTCTAT 57.773 40.000 0.00 0.00 41.75 1.98
2665 3959 5.559148 AGGCACTCTCTTATTTCTATGGG 57.441 43.478 0.00 0.00 0.00 4.00
2757 4051 2.171027 TCGGCAAATACCCGGTAGATTT 59.829 45.455 0.00 0.00 45.60 2.17
2829 4127 2.369860 TGCAGACTCCAGAGAAACACAT 59.630 45.455 0.70 0.00 0.00 3.21
2850 4148 2.483197 GGACACCAAAACCGCCGTT 61.483 57.895 0.00 0.00 0.00 4.44
2876 4174 3.061905 GCCCTTCCCTCCATCCACC 62.062 68.421 0.00 0.00 0.00 4.61
2877 4175 2.386935 CCCTTCCCTCCATCCACCC 61.387 68.421 0.00 0.00 0.00 4.61
2878 4176 2.386935 CCTTCCCTCCATCCACCCC 61.387 68.421 0.00 0.00 0.00 4.95
2879 4177 2.286885 TTCCCTCCATCCACCCCC 60.287 66.667 0.00 0.00 0.00 5.40
2880 4178 2.865183 CTTCCCTCCATCCACCCCCT 62.865 65.000 0.00 0.00 0.00 4.79
2881 4179 3.099170 CCCTCCATCCACCCCCTG 61.099 72.222 0.00 0.00 0.00 4.45
2882 4180 3.813724 CCTCCATCCACCCCCTGC 61.814 72.222 0.00 0.00 0.00 4.85
2883 4181 3.813724 CTCCATCCACCCCCTGCC 61.814 72.222 0.00 0.00 0.00 4.85
2886 4184 3.813724 CATCCACCCCCTGCCCTC 61.814 72.222 0.00 0.00 0.00 4.30
2901 4199 4.742201 CTCGAGGCGGTGGTGGTG 62.742 72.222 3.91 0.00 0.00 4.17
2908 4206 3.286751 CGGTGGTGGTGGTGCTTG 61.287 66.667 0.00 0.00 0.00 4.01
2909 4207 2.912025 GGTGGTGGTGGTGCTTGG 60.912 66.667 0.00 0.00 0.00 3.61
2910 4208 2.123897 GTGGTGGTGGTGCTTGGT 60.124 61.111 0.00 0.00 0.00 3.67
2911 4209 2.123939 TGGTGGTGGTGCTTGGTG 60.124 61.111 0.00 0.00 0.00 4.17
2912 4210 2.123897 GGTGGTGGTGCTTGGTGT 60.124 61.111 0.00 0.00 0.00 4.16
2913 4211 1.756561 GGTGGTGGTGCTTGGTGTT 60.757 57.895 0.00 0.00 0.00 3.32
2914 4212 0.466555 GGTGGTGGTGCTTGGTGTTA 60.467 55.000 0.00 0.00 0.00 2.41
2915 4213 0.951558 GTGGTGGTGCTTGGTGTTAG 59.048 55.000 0.00 0.00 0.00 2.34
2916 4214 0.548989 TGGTGGTGCTTGGTGTTAGT 59.451 50.000 0.00 0.00 0.00 2.24
2917 4215 0.951558 GGTGGTGCTTGGTGTTAGTG 59.048 55.000 0.00 0.00 0.00 2.74
2918 4216 0.951558 GTGGTGCTTGGTGTTAGTGG 59.048 55.000 0.00 0.00 0.00 4.00
2919 4217 0.840617 TGGTGCTTGGTGTTAGTGGA 59.159 50.000 0.00 0.00 0.00 4.02
2920 4218 1.202758 TGGTGCTTGGTGTTAGTGGAG 60.203 52.381 0.00 0.00 0.00 3.86
2921 4219 1.523758 GTGCTTGGTGTTAGTGGAGG 58.476 55.000 0.00 0.00 0.00 4.30
2922 4220 0.250727 TGCTTGGTGTTAGTGGAGGC 60.251 55.000 0.00 0.00 0.00 4.70
2923 4221 0.036875 GCTTGGTGTTAGTGGAGGCT 59.963 55.000 0.00 0.00 0.00 4.58
2924 4222 1.946283 GCTTGGTGTTAGTGGAGGCTC 60.946 57.143 5.78 5.78 0.00 4.70
2925 4223 0.320374 TTGGTGTTAGTGGAGGCTCG 59.680 55.000 8.69 0.00 0.00 5.03
2926 4224 0.830444 TGGTGTTAGTGGAGGCTCGT 60.830 55.000 8.69 0.00 0.00 4.18
2927 4225 0.389948 GGTGTTAGTGGAGGCTCGTG 60.390 60.000 8.69 0.00 0.00 4.35
2928 4226 0.601558 GTGTTAGTGGAGGCTCGTGA 59.398 55.000 8.69 0.00 0.00 4.35
2929 4227 0.601558 TGTTAGTGGAGGCTCGTGAC 59.398 55.000 8.69 5.18 0.00 3.67
2930 4228 0.456312 GTTAGTGGAGGCTCGTGACG 60.456 60.000 8.69 0.00 0.00 4.35
2931 4229 1.592400 TTAGTGGAGGCTCGTGACGG 61.592 60.000 8.69 0.00 0.00 4.79
2932 4230 4.436998 GTGGAGGCTCGTGACGGG 62.437 72.222 8.69 1.40 0.00 5.28
2933 4231 4.671590 TGGAGGCTCGTGACGGGA 62.672 66.667 10.00 0.00 0.00 5.14
2934 4232 4.131088 GGAGGCTCGTGACGGGAC 62.131 72.222 10.00 5.45 34.30 4.46
2935 4233 4.131088 GAGGCTCGTGACGGGACC 62.131 72.222 7.29 8.82 34.90 4.46
2938 4236 3.823330 GCTCGTGACGGGACCGAT 61.823 66.667 18.80 1.42 42.83 4.18
2939 4237 2.408022 CTCGTGACGGGACCGATC 59.592 66.667 18.80 11.43 42.83 3.69
3052 4353 0.748729 AAGGTTGCGACGGTGGAAAA 60.749 50.000 0.00 0.00 0.00 2.29
3124 4425 2.036862 GAGGAAGAAGTACGTTGGTGGT 59.963 50.000 0.00 0.00 0.00 4.16
3256 4558 6.267070 TCACGTTTGTTCCAAAAATAACTCC 58.733 36.000 0.00 0.00 0.00 3.85
3259 4561 5.452077 CGTTTGTTCCAAAAATAACTCCCCA 60.452 40.000 0.00 0.00 0.00 4.96
3274 4576 2.041620 CTCCCCAGAAGGTTTCATTCCA 59.958 50.000 0.00 0.00 0.00 3.53
3375 4680 8.323567 TGGTTAGTAGGTTAGTCCCAAAAATAG 58.676 37.037 0.00 0.00 36.75 1.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 6.112734 AGTGTTTTGATTTTTGAGGGGTTTC 58.887 36.000 0.00 0.00 0.00 2.78
69 70 3.840468 TGCACGTATGTAGACAATTCGT 58.160 40.909 0.00 4.98 33.55 3.85
71 72 8.447787 AAAATTTGCACGTATGTAGACAATTC 57.552 30.769 0.00 0.00 0.00 2.17
78 79 7.449827 TCTTACGAAAATTTGCACGTATGTAG 58.550 34.615 22.10 17.27 40.07 2.74
158 159 1.670674 GGGTACGACTGCATTCAACGA 60.671 52.381 4.82 0.00 0.00 3.85
159 160 0.719465 GGGTACGACTGCATTCAACG 59.281 55.000 4.82 1.35 0.00 4.10
164 165 1.217244 GGACGGGTACGACTGCATT 59.783 57.895 0.00 0.00 44.60 3.56
167 168 1.226888 GATGGACGGGTACGACTGC 60.227 63.158 0.00 0.00 44.60 4.40
169 170 0.034767 TCTGATGGACGGGTACGACT 60.035 55.000 0.00 0.00 44.60 4.18
211 212 3.195698 GGATCCACTTCCGCGCAC 61.196 66.667 8.75 0.00 0.00 5.34
212 213 3.371097 GAGGATCCACTTCCGCGCA 62.371 63.158 15.82 0.00 40.94 6.09
213 214 1.735376 TAGAGGATCCACTTCCGCGC 61.735 60.000 17.39 0.00 40.20 6.86
215 216 1.480954 TGTTAGAGGATCCACTTCCGC 59.519 52.381 17.39 6.12 40.94 5.54
217 218 4.954875 CTCATGTTAGAGGATCCACTTCC 58.045 47.826 17.39 8.65 33.66 3.46
240 241 1.485480 GTAGCTTAGGTGACTTCCCCC 59.515 57.143 0.00 0.00 43.67 5.40
241 242 1.136500 CGTAGCTTAGGTGACTTCCCC 59.864 57.143 0.00 0.00 43.67 4.81
242 243 1.136500 CCGTAGCTTAGGTGACTTCCC 59.864 57.143 0.00 0.00 43.67 3.97
243 244 1.823610 ACCGTAGCTTAGGTGACTTCC 59.176 52.381 11.43 0.00 43.67 3.46
250 251 0.531200 GTCTGCACCGTAGCTTAGGT 59.469 55.000 6.95 6.95 42.34 3.08
251 252 0.818296 AGTCTGCACCGTAGCTTAGG 59.182 55.000 0.00 0.00 34.99 2.69
252 253 2.683867 ACTAGTCTGCACCGTAGCTTAG 59.316 50.000 0.00 0.00 34.99 2.18
253 254 2.422479 CACTAGTCTGCACCGTAGCTTA 59.578 50.000 0.00 0.00 34.99 3.09
254 255 1.202582 CACTAGTCTGCACCGTAGCTT 59.797 52.381 0.00 0.00 34.99 3.74
255 256 0.811915 CACTAGTCTGCACCGTAGCT 59.188 55.000 0.00 0.00 34.99 3.32
256 257 0.526662 ACACTAGTCTGCACCGTAGC 59.473 55.000 0.00 0.00 0.00 3.58
257 258 4.430137 TTTACACTAGTCTGCACCGTAG 57.570 45.455 0.00 0.00 0.00 3.51
258 259 4.037803 TGTTTTACACTAGTCTGCACCGTA 59.962 41.667 0.00 0.00 0.00 4.02
259 260 3.181473 TGTTTTACACTAGTCTGCACCGT 60.181 43.478 0.00 0.00 0.00 4.83
260 261 3.386486 TGTTTTACACTAGTCTGCACCG 58.614 45.455 0.00 0.00 0.00 4.94
261 262 4.628074 TCTGTTTTACACTAGTCTGCACC 58.372 43.478 0.00 0.00 0.00 5.01
262 263 5.529791 TCTCTGTTTTACACTAGTCTGCAC 58.470 41.667 0.00 0.00 0.00 4.57
263 264 5.784578 TCTCTGTTTTACACTAGTCTGCA 57.215 39.130 0.00 0.00 0.00 4.41
264 265 5.635700 CCTTCTCTGTTTTACACTAGTCTGC 59.364 44.000 0.00 0.00 0.00 4.26
265 266 6.982852 TCCTTCTCTGTTTTACACTAGTCTG 58.017 40.000 0.00 0.00 0.00 3.51
266 267 7.598759 TTCCTTCTCTGTTTTACACTAGTCT 57.401 36.000 0.00 0.00 0.00 3.24
267 268 7.927092 ACTTTCCTTCTCTGTTTTACACTAGTC 59.073 37.037 0.00 0.00 0.00 2.59
268 269 7.793036 ACTTTCCTTCTCTGTTTTACACTAGT 58.207 34.615 0.00 0.00 0.00 2.57
269 270 8.664211 AACTTTCCTTCTCTGTTTTACACTAG 57.336 34.615 0.00 0.00 0.00 2.57
270 271 9.538508 GTAACTTTCCTTCTCTGTTTTACACTA 57.461 33.333 0.00 0.00 0.00 2.74
271 272 7.224167 CGTAACTTTCCTTCTCTGTTTTACACT 59.776 37.037 0.00 0.00 0.00 3.55
272 273 7.010830 ACGTAACTTTCCTTCTCTGTTTTACAC 59.989 37.037 0.00 0.00 0.00 2.90
273 274 7.010738 CACGTAACTTTCCTTCTCTGTTTTACA 59.989 37.037 0.00 0.00 0.00 2.41
274 275 7.342942 CACGTAACTTTCCTTCTCTGTTTTAC 58.657 38.462 0.00 0.00 0.00 2.01
275 276 6.018507 GCACGTAACTTTCCTTCTCTGTTTTA 60.019 38.462 0.00 0.00 0.00 1.52
276 277 5.220796 GCACGTAACTTTCCTTCTCTGTTTT 60.221 40.000 0.00 0.00 0.00 2.43
277 278 4.272748 GCACGTAACTTTCCTTCTCTGTTT 59.727 41.667 0.00 0.00 0.00 2.83
278 279 3.808174 GCACGTAACTTTCCTTCTCTGTT 59.192 43.478 0.00 0.00 0.00 3.16
279 280 3.181469 TGCACGTAACTTTCCTTCTCTGT 60.181 43.478 0.00 0.00 0.00 3.41
280 281 3.184581 GTGCACGTAACTTTCCTTCTCTG 59.815 47.826 0.00 0.00 0.00 3.35
281 282 3.181469 TGTGCACGTAACTTTCCTTCTCT 60.181 43.478 13.13 0.00 0.00 3.10
282 283 3.128349 TGTGCACGTAACTTTCCTTCTC 58.872 45.455 13.13 0.00 0.00 2.87
283 284 3.131396 CTGTGCACGTAACTTTCCTTCT 58.869 45.455 13.13 0.00 0.00 2.85
284 285 2.870411 ACTGTGCACGTAACTTTCCTTC 59.130 45.455 13.13 0.00 0.00 3.46
285 286 2.914059 ACTGTGCACGTAACTTTCCTT 58.086 42.857 13.13 0.00 0.00 3.36
286 287 2.614829 ACTGTGCACGTAACTTTCCT 57.385 45.000 13.13 0.00 0.00 3.36
287 288 3.387397 ACTACTGTGCACGTAACTTTCC 58.613 45.455 13.13 0.00 0.00 3.13
288 289 4.046462 TGACTACTGTGCACGTAACTTTC 58.954 43.478 13.13 10.78 0.00 2.62
289 290 4.049546 TGACTACTGTGCACGTAACTTT 57.950 40.909 13.13 2.81 0.00 2.66
290 291 3.720949 TGACTACTGTGCACGTAACTT 57.279 42.857 13.13 5.00 0.00 2.66
291 292 3.720949 TTGACTACTGTGCACGTAACT 57.279 42.857 13.13 5.58 0.00 2.24
292 293 3.800506 AGTTTGACTACTGTGCACGTAAC 59.199 43.478 13.13 12.66 0.00 2.50
293 294 4.049546 AGTTTGACTACTGTGCACGTAA 57.950 40.909 13.13 2.00 0.00 3.18
294 295 3.720949 AGTTTGACTACTGTGCACGTA 57.279 42.857 13.13 15.38 0.00 3.57
295 296 2.596904 AGTTTGACTACTGTGCACGT 57.403 45.000 13.13 15.07 0.00 4.49
296 297 5.805486 ACATATAGTTTGACTACTGTGCACG 59.195 40.000 13.13 9.67 32.84 5.34
297 298 8.873215 ATACATATAGTTTGACTACTGTGCAC 57.127 34.615 10.75 10.75 34.09 4.57
298 299 8.914011 AGATACATATAGTTTGACTACTGTGCA 58.086 33.333 12.08 0.00 34.09 4.57
321 322 9.496873 CTCTGTACAGTACTTGCTATAGTAGAT 57.503 37.037 21.99 0.00 31.56 1.98
322 323 8.484575 ACTCTGTACAGTACTTGCTATAGTAGA 58.515 37.037 21.99 1.85 31.56 2.59
323 324 8.665643 ACTCTGTACAGTACTTGCTATAGTAG 57.334 38.462 21.99 9.41 31.56 2.57
325 326 7.941431 AACTCTGTACAGTACTTGCTATAGT 57.059 36.000 21.99 11.10 0.00 2.12
326 327 9.111613 AGTAACTCTGTACAGTACTTGCTATAG 57.888 37.037 21.99 10.49 0.00 1.31
327 328 8.890718 CAGTAACTCTGTACAGTACTTGCTATA 58.109 37.037 21.99 0.00 39.17 1.31
328 329 7.763356 CAGTAACTCTGTACAGTACTTGCTAT 58.237 38.462 21.99 0.00 39.17 2.97
329 330 7.142306 CAGTAACTCTGTACAGTACTTGCTA 57.858 40.000 21.99 0.00 39.17 3.49
330 331 6.015027 CAGTAACTCTGTACAGTACTTGCT 57.985 41.667 21.99 15.77 39.17 3.91
395 396 9.994432 CTTTACAAAAATGGCATACAAACAAAA 57.006 25.926 0.00 0.00 0.00 2.44
396 397 8.616076 CCTTTACAAAAATGGCATACAAACAAA 58.384 29.630 0.00 0.00 0.00 2.83
397 398 7.770897 ACCTTTACAAAAATGGCATACAAACAA 59.229 29.630 0.00 0.00 0.00 2.83
398 399 7.275920 ACCTTTACAAAAATGGCATACAAACA 58.724 30.769 0.00 0.00 0.00 2.83
399 400 7.722795 ACCTTTACAAAAATGGCATACAAAC 57.277 32.000 0.00 0.00 0.00 2.93
407 408 9.797556 CCTACTTTATACCTTTACAAAAATGGC 57.202 33.333 0.00 0.00 0.00 4.40
418 419 8.324306 GGGAGTACAAACCTACTTTATACCTTT 58.676 37.037 0.00 0.00 0.00 3.11
419 420 7.681598 AGGGAGTACAAACCTACTTTATACCTT 59.318 37.037 0.00 0.00 31.53 3.50
420 421 7.194761 AGGGAGTACAAACCTACTTTATACCT 58.805 38.462 0.00 0.00 31.53 3.08
421 422 7.344093 AGAGGGAGTACAAACCTACTTTATACC 59.656 40.741 0.00 0.00 34.02 2.73
422 423 8.196103 CAGAGGGAGTACAAACCTACTTTATAC 58.804 40.741 0.00 0.00 34.02 1.47
423 424 7.897565 ACAGAGGGAGTACAAACCTACTTTATA 59.102 37.037 0.00 0.00 34.02 0.98
424 425 6.729569 ACAGAGGGAGTACAAACCTACTTTAT 59.270 38.462 0.00 0.00 34.02 1.40
425 426 6.080009 ACAGAGGGAGTACAAACCTACTTTA 58.920 40.000 0.00 0.00 34.02 1.85
426 427 4.906060 ACAGAGGGAGTACAAACCTACTTT 59.094 41.667 0.00 0.00 34.02 2.66
427 428 4.490706 ACAGAGGGAGTACAAACCTACTT 58.509 43.478 0.00 0.00 34.02 2.24
428 429 4.129317 ACAGAGGGAGTACAAACCTACT 57.871 45.455 0.00 0.00 34.02 2.57
429 430 5.990120 TTACAGAGGGAGTACAAACCTAC 57.010 43.478 0.00 0.00 34.02 3.18
430 431 7.563724 AATTTACAGAGGGAGTACAAACCTA 57.436 36.000 0.00 0.00 34.02 3.08
431 432 6.449830 AATTTACAGAGGGAGTACAAACCT 57.550 37.500 3.04 3.04 37.31 3.50
432 433 8.803397 ATTAATTTACAGAGGGAGTACAAACC 57.197 34.615 0.00 0.00 0.00 3.27
440 441 9.360093 CGCTCTTATATTAATTTACAGAGGGAG 57.640 37.037 20.74 5.24 40.49 4.30
441 442 8.867097 ACGCTCTTATATTAATTTACAGAGGGA 58.133 33.333 25.54 1.67 40.49 4.20
442 443 9.490379 AACGCTCTTATATTAATTTACAGAGGG 57.510 33.333 21.96 21.96 42.53 4.30
515 516 9.657419 CTTGAATTAATTTGCAAATTACTCCCT 57.343 29.630 33.73 19.33 39.75 4.20
516 517 9.435688 ACTTGAATTAATTTGCAAATTACTCCC 57.564 29.630 33.73 24.57 39.75 4.30
549 550 9.829507 CTTCTTCACTTCCATATGATTAAGACT 57.170 33.333 3.65 0.00 0.00 3.24
550 551 9.050601 CCTTCTTCACTTCCATATGATTAAGAC 57.949 37.037 3.65 0.00 0.00 3.01
551 552 8.992349 TCCTTCTTCACTTCCATATGATTAAGA 58.008 33.333 3.65 2.17 0.00 2.10
552 553 9.618890 TTCCTTCTTCACTTCCATATGATTAAG 57.381 33.333 3.65 7.48 0.00 1.85
553 554 9.973661 TTTCCTTCTTCACTTCCATATGATTAA 57.026 29.630 3.65 0.00 0.00 1.40
554 555 9.618890 CTTTCCTTCTTCACTTCCATATGATTA 57.381 33.333 3.65 0.00 0.00 1.75
555 556 8.112183 ACTTTCCTTCTTCACTTCCATATGATT 58.888 33.333 3.65 0.00 0.00 2.57
556 557 7.637511 ACTTTCCTTCTTCACTTCCATATGAT 58.362 34.615 3.65 0.00 0.00 2.45
557 558 7.020827 ACTTTCCTTCTTCACTTCCATATGA 57.979 36.000 3.65 0.00 0.00 2.15
558 559 7.693969 AACTTTCCTTCTTCACTTCCATATG 57.306 36.000 0.00 0.00 0.00 1.78
559 560 8.049721 CCTAACTTTCCTTCTTCACTTCCATAT 58.950 37.037 0.00 0.00 0.00 1.78
560 561 7.394816 CCTAACTTTCCTTCTTCACTTCCATA 58.605 38.462 0.00 0.00 0.00 2.74
561 562 6.241645 CCTAACTTTCCTTCTTCACTTCCAT 58.758 40.000 0.00 0.00 0.00 3.41
562 563 5.456186 CCCTAACTTTCCTTCTTCACTTCCA 60.456 44.000 0.00 0.00 0.00 3.53
563 564 5.004448 CCCTAACTTTCCTTCTTCACTTCC 58.996 45.833 0.00 0.00 0.00 3.46
564 565 5.866207 TCCCTAACTTTCCTTCTTCACTTC 58.134 41.667 0.00 0.00 0.00 3.01
565 566 5.906772 TCCCTAACTTTCCTTCTTCACTT 57.093 39.130 0.00 0.00 0.00 3.16
566 567 5.369993 ACTTCCCTAACTTTCCTTCTTCACT 59.630 40.000 0.00 0.00 0.00 3.41
567 568 5.470437 CACTTCCCTAACTTTCCTTCTTCAC 59.530 44.000 0.00 0.00 0.00 3.18
568 569 5.132144 ACACTTCCCTAACTTTCCTTCTTCA 59.868 40.000 0.00 0.00 0.00 3.02
569 570 5.622180 ACACTTCCCTAACTTTCCTTCTTC 58.378 41.667 0.00 0.00 0.00 2.87
570 571 5.648330 ACACTTCCCTAACTTTCCTTCTT 57.352 39.130 0.00 0.00 0.00 2.52
571 572 5.280062 GCTACACTTCCCTAACTTTCCTTCT 60.280 44.000 0.00 0.00 0.00 2.85
572 573 4.936411 GCTACACTTCCCTAACTTTCCTTC 59.064 45.833 0.00 0.00 0.00 3.46
573 574 4.597940 AGCTACACTTCCCTAACTTTCCTT 59.402 41.667 0.00 0.00 0.00 3.36
574 575 4.168883 AGCTACACTTCCCTAACTTTCCT 58.831 43.478 0.00 0.00 0.00 3.36
575 576 4.554960 AGCTACACTTCCCTAACTTTCC 57.445 45.455 0.00 0.00 0.00 3.13
576 577 6.107343 CCTAAGCTACACTTCCCTAACTTTC 58.893 44.000 0.00 0.00 39.97 2.62
577 578 5.546887 ACCTAAGCTACACTTCCCTAACTTT 59.453 40.000 0.00 0.00 39.97 2.66
578 579 5.046520 CACCTAAGCTACACTTCCCTAACTT 60.047 44.000 0.00 0.00 39.97 2.66
579 580 4.466726 CACCTAAGCTACACTTCCCTAACT 59.533 45.833 0.00 0.00 39.97 2.24
580 581 4.465305 TCACCTAAGCTACACTTCCCTAAC 59.535 45.833 0.00 0.00 39.97 2.34
581 582 4.465305 GTCACCTAAGCTACACTTCCCTAA 59.535 45.833 0.00 0.00 39.97 2.69
582 583 4.021916 GTCACCTAAGCTACACTTCCCTA 58.978 47.826 0.00 0.00 39.97 3.53
583 584 2.832733 GTCACCTAAGCTACACTTCCCT 59.167 50.000 0.00 0.00 39.97 4.20
584 585 2.832733 AGTCACCTAAGCTACACTTCCC 59.167 50.000 0.00 0.00 39.97 3.97
585 586 4.496360 GAAGTCACCTAAGCTACACTTCC 58.504 47.826 0.00 0.00 39.97 3.46
586 587 4.496360 GGAAGTCACCTAAGCTACACTTC 58.504 47.826 0.00 0.00 39.97 3.01
587 588 3.261137 GGGAAGTCACCTAAGCTACACTT 59.739 47.826 0.00 0.00 42.76 3.16
588 589 2.832733 GGGAAGTCACCTAAGCTACACT 59.167 50.000 0.00 0.00 0.00 3.55
589 590 2.832733 AGGGAAGTCACCTAAGCTACAC 59.167 50.000 0.00 0.00 36.32 2.90
590 591 3.097614 GAGGGAAGTCACCTAAGCTACA 58.902 50.000 0.00 0.00 38.79 2.74
591 592 2.431419 GGAGGGAAGTCACCTAAGCTAC 59.569 54.545 0.00 0.00 38.79 3.58
592 593 2.748388 GGAGGGAAGTCACCTAAGCTA 58.252 52.381 0.00 0.00 38.79 3.32
593 594 1.574263 GGAGGGAAGTCACCTAAGCT 58.426 55.000 0.00 0.00 38.79 3.74
594 595 0.175989 CGGAGGGAAGTCACCTAAGC 59.824 60.000 0.00 0.00 38.79 3.09
595 596 0.175989 GCGGAGGGAAGTCACCTAAG 59.824 60.000 0.00 0.00 38.79 2.18
596 597 1.601419 CGCGGAGGGAAGTCACCTAA 61.601 60.000 0.00 0.00 46.37 2.69
597 598 2.050350 CGCGGAGGGAAGTCACCTA 61.050 63.158 0.00 0.00 46.37 3.08
598 599 3.382832 CGCGGAGGGAAGTCACCT 61.383 66.667 0.00 0.00 46.37 4.00
599 600 4.452733 CCGCGGAGGGAAGTCACC 62.453 72.222 24.07 0.00 46.37 4.02
608 609 2.046314 AATGTTGACCCGCGGAGG 60.046 61.111 30.73 14.21 40.63 4.30
609 610 0.673644 AAGAATGTTGACCCGCGGAG 60.674 55.000 30.73 19.69 0.00 4.63
610 611 0.672401 GAAGAATGTTGACCCGCGGA 60.672 55.000 30.73 5.29 0.00 5.54
611 612 0.673644 AGAAGAATGTTGACCCGCGG 60.674 55.000 21.04 21.04 0.00 6.46
612 613 0.721718 GAGAAGAATGTTGACCCGCG 59.278 55.000 0.00 0.00 0.00 6.46
613 614 1.087501 GGAGAAGAATGTTGACCCGC 58.912 55.000 0.00 0.00 0.00 6.13
614 615 1.679032 GGGGAGAAGAATGTTGACCCG 60.679 57.143 0.00 0.00 37.01 5.28
615 616 1.341089 GGGGGAGAAGAATGTTGACCC 60.341 57.143 0.00 0.00 36.17 4.46
616 617 1.636003 AGGGGGAGAAGAATGTTGACC 59.364 52.381 0.00 0.00 0.00 4.02
617 618 2.573915 AGAGGGGGAGAAGAATGTTGAC 59.426 50.000 0.00 0.00 0.00 3.18
618 619 2.840651 GAGAGGGGGAGAAGAATGTTGA 59.159 50.000 0.00 0.00 0.00 3.18
619 620 2.843113 AGAGAGGGGGAGAAGAATGTTG 59.157 50.000 0.00 0.00 0.00 3.33
620 621 3.111484 GAGAGAGGGGGAGAAGAATGTT 58.889 50.000 0.00 0.00 0.00 2.71
621 622 2.317594 AGAGAGAGGGGGAGAAGAATGT 59.682 50.000 0.00 0.00 0.00 2.71
622 623 3.044873 AGAGAGAGGGGGAGAAGAATG 57.955 52.381 0.00 0.00 0.00 2.67
623 624 3.246314 ACAAGAGAGAGGGGGAGAAGAAT 60.246 47.826 0.00 0.00 0.00 2.40
624 625 2.112691 ACAAGAGAGAGGGGGAGAAGAA 59.887 50.000 0.00 0.00 0.00 2.52
625 626 1.719378 ACAAGAGAGAGGGGGAGAAGA 59.281 52.381 0.00 0.00 0.00 2.87
626 627 2.246091 ACAAGAGAGAGGGGGAGAAG 57.754 55.000 0.00 0.00 0.00 2.85
627 628 2.112691 AGAACAAGAGAGAGGGGGAGAA 59.887 50.000 0.00 0.00 0.00 2.87
628 629 1.719378 AGAACAAGAGAGAGGGGGAGA 59.281 52.381 0.00 0.00 0.00 3.71
629 630 2.246091 AGAACAAGAGAGAGGGGGAG 57.754 55.000 0.00 0.00 0.00 4.30
630 631 2.655407 ACTAGAACAAGAGAGAGGGGGA 59.345 50.000 0.00 0.00 0.00 4.81
631 632 3.108847 ACTAGAACAAGAGAGAGGGGG 57.891 52.381 0.00 0.00 0.00 5.40
632 633 3.835395 ACAACTAGAACAAGAGAGAGGGG 59.165 47.826 0.00 0.00 0.00 4.79
633 634 5.476091 AACAACTAGAACAAGAGAGAGGG 57.524 43.478 0.00 0.00 0.00 4.30
634 635 6.986817 TGAAAACAACTAGAACAAGAGAGAGG 59.013 38.462 0.00 0.00 0.00 3.69
635 636 8.425577 TTGAAAACAACTAGAACAAGAGAGAG 57.574 34.615 0.00 0.00 0.00 3.20
636 637 8.964476 ATTGAAAACAACTAGAACAAGAGAGA 57.036 30.769 0.00 0.00 0.00 3.10
643 644 8.677148 AGCTCTAATTGAAAACAACTAGAACA 57.323 30.769 0.00 0.00 0.00 3.18
658 659 6.425114 ACAGTCGCCATTAATAGCTCTAATTG 59.575 38.462 4.36 0.00 0.00 2.32
667 668 7.697691 AGATCAAAAACAGTCGCCATTAATAG 58.302 34.615 0.00 0.00 0.00 1.73
745 746 1.733526 AGGTGCCAACAACTTTCGC 59.266 52.632 0.00 0.00 42.91 4.70
798 839 2.987413 TGTAATTCGCCACTGCTTTG 57.013 45.000 0.00 0.00 34.43 2.77
888 935 3.692593 TCTACTAGTTCGCATGTGCTACA 59.307 43.478 0.00 0.00 39.32 2.74
939 989 8.992835 AGGTTGTACTACTACTTTTTATTCGG 57.007 34.615 7.38 0.00 0.00 4.30
1107 1158 1.444553 CACGAAGTCCACCTCGAGC 60.445 63.158 6.99 0.00 41.61 5.03
1224 1275 4.818863 TCGCCGTCGGGTCCCATA 62.819 66.667 14.38 0.00 36.13 2.74
1299 1350 3.708631 TCTTGGACCTGATCATCTCCTTC 59.291 47.826 16.21 0.47 0.00 3.46
1300 1351 3.729108 TCTTGGACCTGATCATCTCCTT 58.271 45.455 16.21 0.00 0.00 3.36
1470 1521 1.085091 TCTTACCAGACTCGTCGAGC 58.915 55.000 22.00 14.29 32.04 5.03
1522 1576 2.473235 GTCAGAGAAAACGACACAGAGC 59.527 50.000 0.00 0.00 0.00 4.09
1523 1577 3.971150 AGTCAGAGAAAACGACACAGAG 58.029 45.455 0.00 0.00 31.92 3.35
1525 1579 3.706698 TGAGTCAGAGAAAACGACACAG 58.293 45.455 0.00 0.00 31.92 3.66
1526 1580 3.380320 TCTGAGTCAGAGAAAACGACACA 59.620 43.478 19.10 0.00 35.39 3.72
1539 1593 1.267982 CGCACTCGATCTCTGAGTCAG 60.268 57.143 14.36 14.36 44.60 3.51
1559 1618 3.063997 CACGTTCCCTGCATTTCATAGAC 59.936 47.826 0.00 0.00 0.00 2.59
1583 1645 0.382515 CTGGATCGTCTCGTTCCTCC 59.617 60.000 16.50 7.78 43.59 4.30
1758 1825 2.203167 AGCGCCTCCGACTCGATA 60.203 61.111 2.29 0.00 36.29 2.92
1833 1900 2.435586 CAGAGTTGGCCGGCAGAG 60.436 66.667 30.85 6.31 0.00 3.35
2028 3118 1.743958 TCGAACCACTCTTCTCCGATC 59.256 52.381 0.00 0.00 0.00 3.69
2040 3130 1.200839 CTTGAACGCGTCGAACCAC 59.799 57.895 14.44 0.00 0.00 4.16
2294 3392 2.039418 TGATATCCTCCTTGGTGACCG 58.961 52.381 0.00 0.00 37.07 4.79
2310 3408 3.679980 GCTGCTCGACTTTGTTCTTGATA 59.320 43.478 0.00 0.00 0.00 2.15
2330 3428 2.415010 CATCGTCGCCTAGCAGCT 59.585 61.111 0.00 0.00 0.00 4.24
2412 3510 3.682155 GCTTGAGCAGGTTCTGATCTGAT 60.682 47.826 13.22 6.01 45.71 2.90
2481 3582 9.601810 AAACCTAGGGACTTTATTGAAGAAAAT 57.398 29.630 14.81 0.00 41.75 1.82
2482 3583 9.429109 AAAACCTAGGGACTTTATTGAAGAAAA 57.571 29.630 14.81 0.00 41.75 2.29
2504 3605 1.228657 ACCTTGCTCGAGCGGAAAAC 61.229 55.000 30.61 7.57 45.83 2.43
2641 3935 6.495181 TCCCATAGAAATAAGAGAGTGCCTAG 59.505 42.308 0.00 0.00 0.00 3.02
2662 3956 8.908903 GTTGGTTATCACAACATATAATTCCCA 58.091 33.333 3.65 0.00 45.62 4.37
2862 4160 2.286885 GGGGGTGGATGGAGGGAA 60.287 66.667 0.00 0.00 0.00 3.97
2884 4182 4.742201 CACCACCACCGCCTCGAG 62.742 72.222 5.13 5.13 0.00 4.04
2891 4189 3.286751 CAAGCACCACCACCACCG 61.287 66.667 0.00 0.00 0.00 4.94
2892 4190 2.912025 CCAAGCACCACCACCACC 60.912 66.667 0.00 0.00 0.00 4.61
2893 4191 2.123897 ACCAAGCACCACCACCAC 60.124 61.111 0.00 0.00 0.00 4.16
2894 4192 2.123939 CACCAAGCACCACCACCA 60.124 61.111 0.00 0.00 0.00 4.17
2895 4193 0.466555 TAACACCAAGCACCACCACC 60.467 55.000 0.00 0.00 0.00 4.61
2896 4194 0.951558 CTAACACCAAGCACCACCAC 59.048 55.000 0.00 0.00 0.00 4.16
2897 4195 0.548989 ACTAACACCAAGCACCACCA 59.451 50.000 0.00 0.00 0.00 4.17
2898 4196 0.951558 CACTAACACCAAGCACCACC 59.048 55.000 0.00 0.00 0.00 4.61
2899 4197 0.951558 CCACTAACACCAAGCACCAC 59.048 55.000 0.00 0.00 0.00 4.16
2900 4198 0.840617 TCCACTAACACCAAGCACCA 59.159 50.000 0.00 0.00 0.00 4.17
2901 4199 1.523758 CTCCACTAACACCAAGCACC 58.476 55.000 0.00 0.00 0.00 5.01
2902 4200 1.523758 CCTCCACTAACACCAAGCAC 58.476 55.000 0.00 0.00 0.00 4.40
2903 4201 0.250727 GCCTCCACTAACACCAAGCA 60.251 55.000 0.00 0.00 0.00 3.91
2904 4202 0.036875 AGCCTCCACTAACACCAAGC 59.963 55.000 0.00 0.00 0.00 4.01
2905 4203 1.673033 CGAGCCTCCACTAACACCAAG 60.673 57.143 0.00 0.00 0.00 3.61
2906 4204 0.320374 CGAGCCTCCACTAACACCAA 59.680 55.000 0.00 0.00 0.00 3.67
2907 4205 0.830444 ACGAGCCTCCACTAACACCA 60.830 55.000 0.00 0.00 0.00 4.17
2908 4206 0.389948 CACGAGCCTCCACTAACACC 60.390 60.000 0.00 0.00 0.00 4.16
2909 4207 0.601558 TCACGAGCCTCCACTAACAC 59.398 55.000 0.00 0.00 0.00 3.32
2910 4208 0.601558 GTCACGAGCCTCCACTAACA 59.398 55.000 0.00 0.00 0.00 2.41
2911 4209 0.456312 CGTCACGAGCCTCCACTAAC 60.456 60.000 0.00 0.00 0.00 2.34
2912 4210 1.592400 CCGTCACGAGCCTCCACTAA 61.592 60.000 0.00 0.00 0.00 2.24
2913 4211 2.044555 CCGTCACGAGCCTCCACTA 61.045 63.158 0.00 0.00 0.00 2.74
2914 4212 3.374402 CCGTCACGAGCCTCCACT 61.374 66.667 0.00 0.00 0.00 4.00
2915 4213 4.436998 CCCGTCACGAGCCTCCAC 62.437 72.222 0.00 0.00 0.00 4.02
2916 4214 4.671590 TCCCGTCACGAGCCTCCA 62.672 66.667 0.00 0.00 0.00 3.86
2917 4215 4.131088 GTCCCGTCACGAGCCTCC 62.131 72.222 0.00 0.00 0.00 4.30
2918 4216 4.131088 GGTCCCGTCACGAGCCTC 62.131 72.222 0.00 0.00 0.00 4.70
2921 4219 3.753070 GATCGGTCCCGTCACGAGC 62.753 68.421 0.00 0.00 40.21 5.03
2922 4220 2.408022 GATCGGTCCCGTCACGAG 59.592 66.667 0.00 0.00 40.21 4.18
2923 4221 3.502455 CGATCGGTCCCGTCACGA 61.502 66.667 7.38 0.00 41.20 4.35
2924 4222 3.450559 CTCGATCGGTCCCGTCACG 62.451 68.421 16.41 9.90 40.74 4.35
2925 4223 2.408022 CTCGATCGGTCCCGTCAC 59.592 66.667 16.41 0.00 40.74 3.67
2926 4224 2.827190 CCTCGATCGGTCCCGTCA 60.827 66.667 16.41 0.00 40.74 4.35
2927 4225 4.267503 GCCTCGATCGGTCCCGTC 62.268 72.222 16.41 2.38 40.74 4.79
2928 4226 2.693896 ATAGCCTCGATCGGTCCCGT 62.694 60.000 16.41 0.00 40.74 5.28
2929 4227 1.972223 ATAGCCTCGATCGGTCCCG 60.972 63.158 16.41 0.00 41.35 5.14
2930 4228 1.587054 CATAGCCTCGATCGGTCCC 59.413 63.158 16.41 1.64 0.00 4.46
2931 4229 1.179814 ACCATAGCCTCGATCGGTCC 61.180 60.000 16.41 3.51 0.00 4.46
2932 4230 0.039074 CACCATAGCCTCGATCGGTC 60.039 60.000 16.41 4.70 0.00 4.79
2933 4231 0.755698 ACACCATAGCCTCGATCGGT 60.756 55.000 16.41 0.00 0.00 4.69
2934 4232 0.389391 AACACCATAGCCTCGATCGG 59.611 55.000 16.41 5.93 0.00 4.18
2935 4233 1.067060 TCAACACCATAGCCTCGATCG 59.933 52.381 9.36 9.36 0.00 3.69
2936 4234 2.890808 TCAACACCATAGCCTCGATC 57.109 50.000 0.00 0.00 0.00 3.69
2937 4235 2.435805 ACATCAACACCATAGCCTCGAT 59.564 45.455 0.00 0.00 0.00 3.59
2938 4236 1.831106 ACATCAACACCATAGCCTCGA 59.169 47.619 0.00 0.00 0.00 4.04
2939 4237 2.315925 ACATCAACACCATAGCCTCG 57.684 50.000 0.00 0.00 0.00 4.63
3052 4353 1.228154 GGAGCACCACGAAACCCTT 60.228 57.895 0.00 0.00 35.97 3.95
3256 4558 4.322953 CCAAATGGAATGAAACCTTCTGGG 60.323 45.833 0.00 0.00 38.16 4.45
3274 4576 7.660030 AAGGAATATCAAACGGAATCCAAAT 57.340 32.000 0.00 0.00 32.27 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.