Multiple sequence alignment - TraesCS5A01G394000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G394000 chr5A 100.000 2742 0 0 1 2742 589327301 589330042 0.000000e+00 5064.0
1 TraesCS5A01G394000 chr5A 88.351 1116 115 10 997 2099 589311572 589312685 0.000000e+00 1327.0
2 TraesCS5A01G394000 chr5A 100.000 522 0 0 2923 3444 589330223 589330744 0.000000e+00 965.0
3 TraesCS5A01G394000 chr5A 90.634 331 28 3 2087 2415 589312774 589313103 1.470000e-118 436.0
4 TraesCS5A01G394000 chr5A 76.763 482 98 11 1013 1484 589315628 589316105 1.230000e-64 257.0
5 TraesCS5A01G394000 chr5A 83.750 240 34 4 2093 2331 589338020 589338255 4.470000e-54 222.0
6 TraesCS5A01G394000 chr5A 83.750 240 34 4 2093 2331 589373282 589373517 4.470000e-54 222.0
7 TraesCS5A01G394000 chr5B 91.501 1612 94 24 892 2464 576225260 576226867 0.000000e+00 2178.0
8 TraesCS5A01G394000 chr5B 88.969 1115 106 13 997 2099 576160749 576161858 0.000000e+00 1362.0
9 TraesCS5A01G394000 chr5B 90.562 890 79 5 1551 2437 576054974 576055861 0.000000e+00 1173.0
10 TraesCS5A01G394000 chr5B 90.650 492 41 5 998 1485 576053822 576054312 0.000000e+00 649.0
11 TraesCS5A01G394000 chr5B 95.200 375 16 2 1 375 433455777 433455405 2.960000e-165 592.0
12 TraesCS5A01G394000 chr5B 88.701 354 36 4 2093 2444 576161943 576162294 2.460000e-116 429.0
13 TraesCS5A01G394000 chr5B 75.659 493 96 15 1013 1484 576213479 576213968 1.240000e-54 224.0
14 TraesCS5A01G394000 chr5B 82.917 240 36 4 2093 2331 576245717 576245952 9.680000e-51 211.0
15 TraesCS5A01G394000 chr5B 87.143 70 8 1 3374 3442 576211055 576211124 1.020000e-10 78.7
16 TraesCS5A01G394000 chr5D 92.484 1530 88 19 964 2481 469244683 469246197 0.000000e+00 2163.0
17 TraesCS5A01G394000 chr5D 88.821 1145 101 19 980 2099 469228457 469229599 0.000000e+00 1380.0
18 TraesCS5A01G394000 chr5D 88.136 354 38 4 2093 2444 469229695 469230046 5.320000e-113 418.0
19 TraesCS5A01G394000 chr5D 85.213 399 56 1 1703 2098 469242848 469243246 1.150000e-109 407.0
20 TraesCS5A01G394000 chr5D 84.211 399 60 1 1703 2098 469236240 469236638 5.390000e-103 385.0
21 TraesCS5A01G394000 chr5D 79.843 511 84 10 1602 2098 469285328 469285833 4.230000e-94 355.0
22 TraesCS5A01G394000 chr5D 89.855 69 6 1 3375 3442 469232524 469232592 1.700000e-13 87.9
23 TraesCS5A01G394000 chr2B 94.556 900 29 11 1 881 755638605 755637707 0.000000e+00 1373.0
24 TraesCS5A01G394000 chr4B 93.757 897 34 3 1 879 580964069 580963177 0.000000e+00 1327.0
25 TraesCS5A01G394000 chr4B 92.116 761 37 11 139 878 370708605 370709363 0.000000e+00 1051.0
26 TraesCS5A01G394000 chr3B 91.853 896 31 11 1 878 3207897 3207026 0.000000e+00 1212.0
27 TraesCS5A01G394000 chr3B 90.737 896 43 4 1 878 61872559 61871686 0.000000e+00 1158.0
28 TraesCS5A01G394000 chr4A 93.063 764 31 3 1 746 743712710 743713469 0.000000e+00 1098.0
29 TraesCS5A01G394000 chr3D 92.876 758 31 11 139 875 54773287 54774042 0.000000e+00 1079.0
30 TraesCS5A01G394000 chr2D 92.773 761 32 11 139 878 142709622 142710380 0.000000e+00 1079.0
31 TraesCS5A01G394000 chr2D 92.559 766 34 11 139 883 288988951 288988188 0.000000e+00 1077.0
32 TraesCS5A01G394000 chr2D 92.641 761 33 11 139 878 144463596 144464354 0.000000e+00 1074.0
33 TraesCS5A01G394000 chr4D 92.641 761 33 11 139 878 486438883 486439641 0.000000e+00 1074.0
34 TraesCS5A01G394000 chr1A 92.510 761 37 11 139 881 564329857 564330615 0.000000e+00 1072.0
35 TraesCS5A01G394000 chr1D 92.510 761 34 11 139 878 408519316 408518558 0.000000e+00 1068.0
36 TraesCS5A01G394000 chr7B 92.654 422 31 0 5 426 686840524 686840103 2.940000e-170 608.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G394000 chr5A 589327301 589330744 3443 False 3014.500000 5064 100.000000 1 3444 2 chr5A.!!$F4 3443
1 TraesCS5A01G394000 chr5A 589311572 589316105 4533 False 673.333333 1327 85.249333 997 2415 3 chr5A.!!$F3 1418
2 TraesCS5A01G394000 chr5B 576225260 576226867 1607 False 2178.000000 2178 91.501000 892 2464 1 chr5B.!!$F1 1572
3 TraesCS5A01G394000 chr5B 576053822 576055861 2039 False 911.000000 1173 90.606000 998 2437 2 chr5B.!!$F3 1439
4 TraesCS5A01G394000 chr5B 576160749 576162294 1545 False 895.500000 1362 88.835000 997 2444 2 chr5B.!!$F4 1447
5 TraesCS5A01G394000 chr5D 469242848 469246197 3349 False 1285.000000 2163 88.848500 964 2481 2 chr5D.!!$F3 1517
6 TraesCS5A01G394000 chr5D 469228457 469236638 8181 False 567.725000 1380 87.755750 980 3442 4 chr5D.!!$F2 2462
7 TraesCS5A01G394000 chr5D 469285328 469285833 505 False 355.000000 355 79.843000 1602 2098 1 chr5D.!!$F1 496
8 TraesCS5A01G394000 chr2B 755637707 755638605 898 True 1373.000000 1373 94.556000 1 881 1 chr2B.!!$R1 880
9 TraesCS5A01G394000 chr4B 580963177 580964069 892 True 1327.000000 1327 93.757000 1 879 1 chr4B.!!$R1 878
10 TraesCS5A01G394000 chr4B 370708605 370709363 758 False 1051.000000 1051 92.116000 139 878 1 chr4B.!!$F1 739
11 TraesCS5A01G394000 chr3B 3207026 3207897 871 True 1212.000000 1212 91.853000 1 878 1 chr3B.!!$R1 877
12 TraesCS5A01G394000 chr3B 61871686 61872559 873 True 1158.000000 1158 90.737000 1 878 1 chr3B.!!$R2 877
13 TraesCS5A01G394000 chr4A 743712710 743713469 759 False 1098.000000 1098 93.063000 1 746 1 chr4A.!!$F1 745
14 TraesCS5A01G394000 chr3D 54773287 54774042 755 False 1079.000000 1079 92.876000 139 875 1 chr3D.!!$F1 736
15 TraesCS5A01G394000 chr2D 142709622 142710380 758 False 1079.000000 1079 92.773000 139 878 1 chr2D.!!$F1 739
16 TraesCS5A01G394000 chr2D 288988188 288988951 763 True 1077.000000 1077 92.559000 139 883 1 chr2D.!!$R1 744
17 TraesCS5A01G394000 chr2D 144463596 144464354 758 False 1074.000000 1074 92.641000 139 878 1 chr2D.!!$F2 739
18 TraesCS5A01G394000 chr4D 486438883 486439641 758 False 1074.000000 1074 92.641000 139 878 1 chr4D.!!$F1 739
19 TraesCS5A01G394000 chr1A 564329857 564330615 758 False 1072.000000 1072 92.510000 139 881 1 chr1A.!!$F1 742
20 TraesCS5A01G394000 chr1D 408518558 408519316 758 True 1068.000000 1068 92.510000 139 878 1 chr1D.!!$R1 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 997 0.456653 GTTCGCCACACATTGCATCC 60.457 55.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2498 4143 0.107897 CCACGGCAACATAGCTGGTA 60.108 55.0 0.0 0.0 45.17 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 4.097437 ACAACAAATAGCAGCAGATGGATG 59.903 41.667 0.00 0.00 35.52 3.51
105 106 4.160642 ACAAATAGCAGCAGATGGATGA 57.839 40.909 0.00 0.00 33.82 2.92
176 177 8.624776 GCAGCAGATAAATTAACAGGATTACTT 58.375 33.333 0.00 0.00 0.00 2.24
508 512 2.363711 CTATCTTGCCGGCGCCAGTA 62.364 60.000 28.98 12.90 0.00 2.74
520 542 1.450025 CGCCAGTAACCTTTTCCTCC 58.550 55.000 0.00 0.00 0.00 4.30
780 845 2.210013 TGGAACTGAGCGAGCTGGT 61.210 57.895 0.84 0.00 0.00 4.00
883 949 0.468400 GGACGGAGGGAGTAGATGCT 60.468 60.000 0.00 0.00 0.00 3.79
884 950 1.202903 GGACGGAGGGAGTAGATGCTA 60.203 57.143 0.00 0.00 0.00 3.49
887 953 1.883275 CGGAGGGAGTAGATGCTAGTG 59.117 57.143 0.00 0.00 0.00 2.74
888 954 2.750135 CGGAGGGAGTAGATGCTAGTGT 60.750 54.545 0.00 0.00 0.00 3.55
889 955 2.888414 GGAGGGAGTAGATGCTAGTGTC 59.112 54.545 0.00 0.00 0.00 3.67
890 956 2.888414 GAGGGAGTAGATGCTAGTGTCC 59.112 54.545 0.00 0.00 0.00 4.02
891 957 1.609555 GGGAGTAGATGCTAGTGTCCG 59.390 57.143 0.00 0.00 0.00 4.79
893 959 2.033550 GGAGTAGATGCTAGTGTCCGTG 59.966 54.545 0.00 0.00 0.00 4.94
894 960 1.405821 AGTAGATGCTAGTGTCCGTGC 59.594 52.381 0.00 0.00 0.00 5.34
895 961 0.744874 TAGATGCTAGTGTCCGTGCC 59.255 55.000 0.00 0.00 0.00 5.01
931 997 0.456653 GTTCGCCACACATTGCATCC 60.457 55.000 0.00 0.00 0.00 3.51
933 999 2.048023 CGCCACACATTGCATCCCT 61.048 57.895 0.00 0.00 0.00 4.20
1455 2342 1.072015 CTCAAGATCCCCCAGCTGATC 59.928 57.143 17.39 10.22 38.10 2.92
1501 2405 7.014615 ACAAGGGTATATGCAAATTCCATTCTC 59.985 37.037 0.00 0.00 0.00 2.87
1509 2413 9.803507 ATATGCAAATTCCATTCTCTATTCTGA 57.196 29.630 0.00 0.00 0.00 3.27
1930 3460 1.224315 CATGGCCATCTTCGACCCA 59.776 57.895 17.61 0.00 0.00 4.51
1990 3520 2.108362 CGGCCGTTCCTATGGGTC 59.892 66.667 19.50 0.00 0.00 4.46
2035 3568 3.159298 GAGCAAGGAATGGCTCGAA 57.841 52.632 0.00 0.00 46.01 3.71
2371 4016 0.179000 CCTGGCTCAAGGATAACGCT 59.821 55.000 0.00 0.00 40.02 5.07
2431 4076 6.881602 AGAATTTCACTAGATTTGTGGACCTC 59.118 38.462 0.00 0.00 36.21 3.85
2446 4091 3.907474 TGGACCTCCTAAGTGAATGAACA 59.093 43.478 0.00 0.00 36.82 3.18
2478 4123 3.651562 GCGTATGCGTGTGATTAGTTT 57.348 42.857 4.81 0.00 40.81 2.66
2480 4125 3.342269 CGTATGCGTGTGATTAGTTTGC 58.658 45.455 0.00 0.00 0.00 3.68
2483 4128 5.051039 CGTATGCGTGTGATTAGTTTGCTAT 60.051 40.000 0.00 0.00 0.00 2.97
2484 4129 4.598406 TGCGTGTGATTAGTTTGCTATG 57.402 40.909 0.00 0.00 0.00 2.23
2485 4130 4.000325 TGCGTGTGATTAGTTTGCTATGT 59.000 39.130 0.00 0.00 0.00 2.29
2486 4131 5.172205 TGCGTGTGATTAGTTTGCTATGTA 58.828 37.500 0.00 0.00 0.00 2.29
2489 4134 6.019075 GCGTGTGATTAGTTTGCTATGTATCA 60.019 38.462 0.00 0.00 0.00 2.15
2490 4135 7.307396 GCGTGTGATTAGTTTGCTATGTATCAT 60.307 37.037 0.00 0.00 29.76 2.45
2491 4136 9.191995 CGTGTGATTAGTTTGCTATGTATCATA 57.808 33.333 0.00 0.00 29.76 2.15
2512 4157 6.875726 TCATAAGATGATACCAGCTATGTTGC 59.124 38.462 0.00 0.00 38.21 4.17
2513 4158 4.013267 AGATGATACCAGCTATGTTGCC 57.987 45.455 0.00 0.00 37.25 4.52
2516 4161 1.867233 GATACCAGCTATGTTGCCGTG 59.133 52.381 0.00 0.00 0.00 4.94
2517 4162 0.107897 TACCAGCTATGTTGCCGTGG 60.108 55.000 0.00 0.00 35.29 4.94
2518 4163 2.114670 CCAGCTATGTTGCCGTGGG 61.115 63.158 0.00 0.00 0.00 4.61
2519 4164 1.078497 CAGCTATGTTGCCGTGGGA 60.078 57.895 0.00 0.00 0.00 4.37
2520 4165 0.676466 CAGCTATGTTGCCGTGGGAA 60.676 55.000 0.00 0.00 0.00 3.97
2521 4166 0.255890 AGCTATGTTGCCGTGGGAAT 59.744 50.000 0.00 0.00 0.00 3.01
2522 4167 1.102978 GCTATGTTGCCGTGGGAATT 58.897 50.000 0.00 0.00 0.00 2.17
2524 4169 2.364632 CTATGTTGCCGTGGGAATTGA 58.635 47.619 0.00 0.00 0.00 2.57
2528 4173 0.246086 TTGCCGTGGGAATTGATTGC 59.754 50.000 0.00 0.00 0.00 3.56
2530 4175 0.246086 GCCGTGGGAATTGATTGCAA 59.754 50.000 0.00 0.00 38.60 4.08
2531 4176 1.134729 GCCGTGGGAATTGATTGCAAT 60.135 47.619 12.83 12.83 46.35 3.56
2533 4178 3.243839 GCCGTGGGAATTGATTGCAATAT 60.244 43.478 12.97 0.00 43.71 1.28
2534 4179 4.300803 CCGTGGGAATTGATTGCAATATG 58.699 43.478 12.97 0.00 43.71 1.78
2535 4180 4.202141 CCGTGGGAATTGATTGCAATATGT 60.202 41.667 12.97 0.00 43.71 2.29
2538 4183 6.576185 GTGGGAATTGATTGCAATATGTCTT 58.424 36.000 12.97 2.10 43.71 3.01
2539 4184 7.468494 CGTGGGAATTGATTGCAATATGTCTTA 60.468 37.037 12.97 0.00 43.71 2.10
2540 4185 8.196771 GTGGGAATTGATTGCAATATGTCTTAA 58.803 33.333 12.97 0.00 43.71 1.85
2541 4186 8.926374 TGGGAATTGATTGCAATATGTCTTAAT 58.074 29.630 12.97 0.00 43.71 1.40
2552 4197 9.135189 TGCAATATGTCTTAATAAGATTTGGCT 57.865 29.630 5.96 0.00 40.18 4.75
2553 4198 9.403110 GCAATATGTCTTAATAAGATTTGGCTG 57.597 33.333 5.96 2.27 40.18 4.85
2558 4203 9.851686 ATGTCTTAATAAGATTTGGCTGTATGA 57.148 29.630 5.96 0.00 40.18 2.15
2559 4204 9.679661 TGTCTTAATAAGATTTGGCTGTATGAA 57.320 29.630 5.96 0.00 40.18 2.57
2647 4325 1.158434 TGTTTAATTGGGTCGCCGTC 58.842 50.000 0.00 0.00 0.00 4.79
2649 4327 2.028294 TGTTTAATTGGGTCGCCGTCTA 60.028 45.455 0.00 0.00 0.00 2.59
2652 4330 0.539986 AATTGGGTCGCCGTCTATGT 59.460 50.000 0.00 0.00 0.00 2.29
2653 4331 1.405872 ATTGGGTCGCCGTCTATGTA 58.594 50.000 0.00 0.00 0.00 2.29
2654 4332 1.405872 TTGGGTCGCCGTCTATGTAT 58.594 50.000 0.00 0.00 0.00 2.29
2655 4333 1.405872 TGGGTCGCCGTCTATGTATT 58.594 50.000 0.00 0.00 0.00 1.89
2657 4335 2.957680 TGGGTCGCCGTCTATGTATTTA 59.042 45.455 0.00 0.00 0.00 1.40
2658 4336 3.575256 TGGGTCGCCGTCTATGTATTTAT 59.425 43.478 0.00 0.00 0.00 1.40
2659 4337 4.039488 TGGGTCGCCGTCTATGTATTTATT 59.961 41.667 0.00 0.00 0.00 1.40
2660 4338 4.387862 GGGTCGCCGTCTATGTATTTATTG 59.612 45.833 0.00 0.00 0.00 1.90
2661 4339 4.986659 GGTCGCCGTCTATGTATTTATTGT 59.013 41.667 0.00 0.00 0.00 2.71
2662 4340 5.107607 GGTCGCCGTCTATGTATTTATTGTG 60.108 44.000 0.00 0.00 0.00 3.33
2665 4343 5.107104 CGCCGTCTATGTATTTATTGTGCAT 60.107 40.000 0.00 0.00 0.00 3.96
2666 4344 6.079763 GCCGTCTATGTATTTATTGTGCATG 58.920 40.000 0.00 0.00 0.00 4.06
2667 4345 6.073276 GCCGTCTATGTATTTATTGTGCATGA 60.073 38.462 0.00 0.00 0.00 3.07
2668 4346 7.361201 GCCGTCTATGTATTTATTGTGCATGAT 60.361 37.037 0.00 0.00 0.00 2.45
2669 4347 8.506437 CCGTCTATGTATTTATTGTGCATGATT 58.494 33.333 0.00 0.00 0.00 2.57
2670 4348 9.321590 CGTCTATGTATTTATTGTGCATGATTG 57.678 33.333 0.00 0.00 0.00 2.67
2683 4361 4.558538 GCATGATTGCCTGTTAAGGTAG 57.441 45.455 0.00 0.00 46.43 3.18
2685 4363 5.123227 GCATGATTGCCTGTTAAGGTAGTA 58.877 41.667 0.00 0.00 46.43 1.82
2686 4364 5.765182 GCATGATTGCCTGTTAAGGTAGTAT 59.235 40.000 0.00 0.00 46.43 2.12
2687 4365 6.934645 GCATGATTGCCTGTTAAGGTAGTATA 59.065 38.462 0.00 0.00 46.43 1.47
2689 4367 9.507329 CATGATTGCCTGTTAAGGTAGTATAAT 57.493 33.333 0.00 0.00 46.43 1.28
2695 4373 9.841295 TGCCTGTTAAGGTAGTATAATTTTAGG 57.159 33.333 0.00 0.00 46.43 2.69
2696 4374 9.281371 GCCTGTTAAGGTAGTATAATTTTAGGG 57.719 37.037 0.00 0.00 46.43 3.53
2702 4380 6.756221 AGGTAGTATAATTTTAGGGTGAGCG 58.244 40.000 0.00 0.00 0.00 5.03
2704 4382 5.881923 AGTATAATTTTAGGGTGAGCGGA 57.118 39.130 0.00 0.00 0.00 5.54
2705 4383 6.243216 AGTATAATTTTAGGGTGAGCGGAA 57.757 37.500 0.00 0.00 0.00 4.30
2707 4385 7.114095 AGTATAATTTTAGGGTGAGCGGAAAA 58.886 34.615 0.00 0.00 0.00 2.29
2708 4386 7.778382 AGTATAATTTTAGGGTGAGCGGAAAAT 59.222 33.333 0.96 0.96 32.50 1.82
2709 4387 5.738619 AATTTTAGGGTGAGCGGAAAATT 57.261 34.783 10.25 10.25 35.77 1.82
2710 4388 5.738619 ATTTTAGGGTGAGCGGAAAATTT 57.261 34.783 0.96 0.00 0.00 1.82
2712 4390 5.890424 TTTAGGGTGAGCGGAAAATTTAG 57.110 39.130 0.00 0.00 0.00 1.85
2713 4391 2.723273 AGGGTGAGCGGAAAATTTAGG 58.277 47.619 0.00 0.00 0.00 2.69
2714 4392 2.307686 AGGGTGAGCGGAAAATTTAGGA 59.692 45.455 0.00 0.00 0.00 2.94
2715 4393 2.683362 GGGTGAGCGGAAAATTTAGGAG 59.317 50.000 0.00 0.00 0.00 3.69
2717 4395 4.200092 GGTGAGCGGAAAATTTAGGAGAT 58.800 43.478 0.00 0.00 0.00 2.75
2718 4396 4.273724 GGTGAGCGGAAAATTTAGGAGATC 59.726 45.833 0.00 0.00 0.00 2.75
2720 4398 4.876107 TGAGCGGAAAATTTAGGAGATCAC 59.124 41.667 0.00 0.00 0.00 3.06
2723 4401 5.130477 AGCGGAAAATTTAGGAGATCACCTA 59.870 40.000 14.28 14.28 41.00 3.08
2725 4403 6.147985 GCGGAAAATTTAGGAGATCACCTATC 59.852 42.308 18.28 12.46 41.41 2.08
3003 4681 6.693315 TTTTAGGGCAATGTAGCATTACTC 57.307 37.500 0.00 0.00 35.83 2.59
3004 4682 3.931907 AGGGCAATGTAGCATTACTCA 57.068 42.857 0.00 0.00 35.83 3.41
3005 4683 4.443978 AGGGCAATGTAGCATTACTCAT 57.556 40.909 0.00 0.00 35.83 2.90
3006 4684 4.392940 AGGGCAATGTAGCATTACTCATC 58.607 43.478 0.00 0.00 35.83 2.92
3007 4685 4.103785 AGGGCAATGTAGCATTACTCATCT 59.896 41.667 0.00 0.00 35.83 2.90
3008 4686 5.307976 AGGGCAATGTAGCATTACTCATCTA 59.692 40.000 0.00 0.00 35.83 1.98
3009 4687 5.997746 GGGCAATGTAGCATTACTCATCTAA 59.002 40.000 0.00 0.00 35.83 2.10
3011 4689 7.175641 GGGCAATGTAGCATTACTCATCTAATT 59.824 37.037 0.00 0.00 35.83 1.40
3013 4691 8.562892 GCAATGTAGCATTACTCATCTAATTGT 58.437 33.333 0.00 0.00 0.00 2.71
3024 4702 9.929180 TTACTCATCTAATTGTATAGGATGTGC 57.071 33.333 0.00 0.00 0.00 4.57
3025 4703 7.093354 ACTCATCTAATTGTATAGGATGTGCG 58.907 38.462 0.00 0.00 0.00 5.34
3028 4706 1.795768 ATTGTATAGGATGTGCGGCG 58.204 50.000 0.51 0.51 0.00 6.46
3029 4707 0.747852 TTGTATAGGATGTGCGGCGA 59.252 50.000 12.98 0.00 0.00 5.54
3032 4710 1.538512 GTATAGGATGTGCGGCGACTA 59.461 52.381 12.98 2.69 0.00 2.59
3033 4711 0.314302 ATAGGATGTGCGGCGACTAC 59.686 55.000 12.98 6.76 0.00 2.73
3034 4712 0.750546 TAGGATGTGCGGCGACTACT 60.751 55.000 12.98 2.57 0.00 2.57
3036 4714 0.314302 GGATGTGCGGCGACTACTAT 59.686 55.000 12.98 2.90 0.00 2.12
3038 4716 2.052157 GATGTGCGGCGACTACTATTC 58.948 52.381 12.98 2.04 0.00 1.75
3039 4717 1.100510 TGTGCGGCGACTACTATTCT 58.899 50.000 12.98 0.00 0.00 2.40
3040 4718 2.291365 TGTGCGGCGACTACTATTCTA 58.709 47.619 12.98 0.00 0.00 2.10
3041 4719 2.289820 TGTGCGGCGACTACTATTCTAG 59.710 50.000 12.98 0.00 0.00 2.43
3043 4721 2.547211 TGCGGCGACTACTATTCTAGAC 59.453 50.000 12.98 0.00 0.00 2.59
3045 4723 3.606615 GCGGCGACTACTATTCTAGACAC 60.607 52.174 12.98 0.00 0.00 3.67
3047 4725 4.034858 CGGCGACTACTATTCTAGACACAA 59.965 45.833 0.00 0.00 0.00 3.33
3050 4728 6.979238 GGCGACTACTATTCTAGACACAATTT 59.021 38.462 0.00 0.00 0.00 1.82
3051 4729 7.167801 GGCGACTACTATTCTAGACACAATTTC 59.832 40.741 0.00 0.00 0.00 2.17
3052 4730 7.701078 GCGACTACTATTCTAGACACAATTTCA 59.299 37.037 0.00 0.00 0.00 2.69
3054 4732 9.303537 GACTACTATTCTAGACACAATTTCACC 57.696 37.037 0.00 0.00 0.00 4.02
3063 4880 8.154203 TCTAGACACAATTTCACCTTTATGTCA 58.846 33.333 0.00 0.00 38.11 3.58
3065 4882 8.181904 AGACACAATTTCACCTTTATGTCAAT 57.818 30.769 0.00 0.00 38.11 2.57
3067 4884 9.260002 GACACAATTTCACCTTTATGTCAATTT 57.740 29.630 0.00 0.00 36.18 1.82
3068 4885 9.260002 ACACAATTTCACCTTTATGTCAATTTC 57.740 29.630 0.00 0.00 0.00 2.17
3070 4887 8.141268 ACAATTTCACCTTTATGTCAATTTCGT 58.859 29.630 0.00 0.00 0.00 3.85
3071 4888 9.619316 CAATTTCACCTTTATGTCAATTTCGTA 57.381 29.630 0.00 0.00 0.00 3.43
3082 4899 6.582677 TGTCAATTTCGTATCAACCCAAAT 57.417 33.333 0.00 0.00 0.00 2.32
3085 6074 8.240682 TGTCAATTTCGTATCAACCCAAATAAG 58.759 33.333 0.00 0.00 0.00 1.73
3088 6077 4.126208 TCGTATCAACCCAAATAAGCGA 57.874 40.909 0.00 0.00 0.00 4.93
3089 6078 4.699637 TCGTATCAACCCAAATAAGCGAT 58.300 39.130 0.00 0.00 0.00 4.58
3098 6087 6.959639 ACCCAAATAAGCGATGACATTATT 57.040 33.333 0.00 0.00 32.00 1.40
3099 6088 7.346751 ACCCAAATAAGCGATGACATTATTT 57.653 32.000 0.00 0.00 38.83 1.40
3119 6108 3.726557 TTTTCATGGAGCACTGGATCT 57.273 42.857 0.00 0.00 0.00 2.75
3120 6109 2.996249 TTCATGGAGCACTGGATCTC 57.004 50.000 0.00 0.00 0.00 2.75
3121 6110 1.126488 TCATGGAGCACTGGATCTCC 58.874 55.000 1.54 1.54 46.95 3.71
3124 6113 2.601664 GGAGCACTGGATCTCCACT 58.398 57.895 3.60 0.00 46.24 4.00
3125 6114 0.463620 GGAGCACTGGATCTCCACTC 59.536 60.000 3.60 6.74 46.24 3.51
3126 6115 1.189752 GAGCACTGGATCTCCACTCA 58.810 55.000 9.36 0.00 42.01 3.41
3128 6117 2.170187 GAGCACTGGATCTCCACTCAAT 59.830 50.000 9.36 0.00 42.01 2.57
3131 6120 3.433314 GCACTGGATCTCCACTCAATGAT 60.433 47.826 0.00 0.00 42.01 2.45
3132 6121 4.127907 CACTGGATCTCCACTCAATGATG 58.872 47.826 0.00 0.00 42.01 3.07
3133 6122 4.035814 ACTGGATCTCCACTCAATGATGA 58.964 43.478 0.00 0.00 42.01 2.92
3134 6123 4.141756 ACTGGATCTCCACTCAATGATGAC 60.142 45.833 0.00 0.00 42.01 3.06
3136 6125 4.125703 GGATCTCCACTCAATGATGACAC 58.874 47.826 0.00 0.00 35.64 3.67
3137 6126 4.141756 GGATCTCCACTCAATGATGACACT 60.142 45.833 0.00 0.00 35.64 3.55
3138 6127 4.198028 TCTCCACTCAATGATGACACTG 57.802 45.455 0.00 0.00 0.00 3.66
3139 6128 3.055602 TCTCCACTCAATGATGACACTGG 60.056 47.826 0.00 0.00 0.00 4.00
3140 6129 2.905736 TCCACTCAATGATGACACTGGA 59.094 45.455 0.00 0.00 30.98 3.86
3141 6130 3.520721 TCCACTCAATGATGACACTGGAT 59.479 43.478 0.00 0.00 29.54 3.41
3142 6131 3.875727 CCACTCAATGATGACACTGGATC 59.124 47.826 0.00 0.00 0.00 3.36
3143 6132 4.383880 CCACTCAATGATGACACTGGATCT 60.384 45.833 0.00 0.00 0.00 2.75
3144 6133 4.809958 CACTCAATGATGACACTGGATCTC 59.190 45.833 0.00 0.00 0.00 2.75
3145 6134 4.715792 ACTCAATGATGACACTGGATCTCT 59.284 41.667 0.00 0.00 0.00 3.10
3146 6135 5.163426 ACTCAATGATGACACTGGATCTCTC 60.163 44.000 0.00 0.00 0.00 3.20
3148 6137 4.669206 ATGATGACACTGGATCTCTCAC 57.331 45.455 0.00 0.00 0.00 3.51
3149 6138 2.762887 TGATGACACTGGATCTCTCACC 59.237 50.000 0.00 0.00 0.00 4.02
3151 6140 2.608623 TGACACTGGATCTCTCACCAA 58.391 47.619 0.00 0.00 35.67 3.67
3152 6141 2.972021 TGACACTGGATCTCTCACCAAA 59.028 45.455 0.00 0.00 35.67 3.28
3154 6143 3.999663 GACACTGGATCTCTCACCAAAAG 59.000 47.826 0.00 0.00 35.67 2.27
3155 6144 2.746362 CACTGGATCTCTCACCAAAAGC 59.254 50.000 0.00 0.00 35.67 3.51
3156 6145 2.641815 ACTGGATCTCTCACCAAAAGCT 59.358 45.455 0.00 0.00 35.67 3.74
3159 6148 3.269178 GGATCTCTCACCAAAAGCTCTG 58.731 50.000 0.00 0.00 0.00 3.35
3161 6150 4.383989 GGATCTCTCACCAAAAGCTCTGAT 60.384 45.833 0.00 0.00 0.00 2.90
3162 6151 3.935315 TCTCTCACCAAAAGCTCTGATG 58.065 45.455 0.00 0.00 0.00 3.07
3163 6152 3.008330 CTCTCACCAAAAGCTCTGATGG 58.992 50.000 5.72 5.72 38.91 3.51
3164 6153 1.471684 CTCACCAAAAGCTCTGATGGC 59.528 52.381 6.88 0.00 36.37 4.40
3165 6154 1.202915 TCACCAAAAGCTCTGATGGCA 60.203 47.619 6.88 0.00 36.37 4.92
3166 6155 1.614903 CACCAAAAGCTCTGATGGCAA 59.385 47.619 0.00 0.00 36.37 4.52
3167 6156 2.232941 CACCAAAAGCTCTGATGGCAAT 59.767 45.455 0.00 0.00 36.37 3.56
3168 6157 2.232941 ACCAAAAGCTCTGATGGCAATG 59.767 45.455 0.00 0.00 36.37 2.82
3169 6158 2.494471 CCAAAAGCTCTGATGGCAATGA 59.506 45.455 0.00 0.00 0.00 2.57
3170 6159 3.056393 CCAAAAGCTCTGATGGCAATGAA 60.056 43.478 0.00 0.00 0.00 2.57
3175 6164 3.575256 AGCTCTGATGGCAATGAACAAAA 59.425 39.130 0.00 0.00 0.00 2.44
3177 6166 4.933400 GCTCTGATGGCAATGAACAAAATT 59.067 37.500 0.00 0.00 0.00 1.82
3178 6167 5.410439 GCTCTGATGGCAATGAACAAAATTT 59.590 36.000 0.00 0.00 0.00 1.82
3179 6168 6.619874 GCTCTGATGGCAATGAACAAAATTTG 60.620 38.462 3.89 3.89 0.00 2.32
3182 6171 7.599621 TCTGATGGCAATGAACAAAATTTGTAG 59.400 33.333 12.11 1.59 44.59 2.74
3184 6173 7.599621 TGATGGCAATGAACAAAATTTGTAGAG 59.400 33.333 12.11 2.66 44.59 2.43
3185 6174 6.222389 TGGCAATGAACAAAATTTGTAGAGG 58.778 36.000 12.11 2.97 44.59 3.69
3186 6175 6.041409 TGGCAATGAACAAAATTTGTAGAGGA 59.959 34.615 12.11 0.00 44.59 3.71
3187 6176 6.366061 GGCAATGAACAAAATTTGTAGAGGAC 59.634 38.462 12.11 0.18 44.59 3.85
3188 6177 7.147976 GCAATGAACAAAATTTGTAGAGGACT 58.852 34.615 12.11 0.00 44.59 3.85
3189 6178 7.327032 GCAATGAACAAAATTTGTAGAGGACTC 59.673 37.037 12.11 4.82 44.59 3.36
3190 6179 8.571336 CAATGAACAAAATTTGTAGAGGACTCT 58.429 33.333 12.11 7.08 44.59 3.24
3191 6180 8.697507 ATGAACAAAATTTGTAGAGGACTCTT 57.302 30.769 12.11 0.19 44.59 2.85
3192 6181 7.930217 TGAACAAAATTTGTAGAGGACTCTTG 58.070 34.615 12.11 0.00 44.59 3.02
3193 6182 7.556275 TGAACAAAATTTGTAGAGGACTCTTGT 59.444 33.333 12.11 0.57 44.59 3.16
3194 6183 7.264373 ACAAAATTTGTAGAGGACTCTTGTG 57.736 36.000 9.92 0.00 43.27 3.33
3195 6184 6.263168 ACAAAATTTGTAGAGGACTCTTGTGG 59.737 38.462 9.92 0.00 43.27 4.17
3196 6185 5.568620 AATTTGTAGAGGACTCTTGTGGT 57.431 39.130 7.21 0.00 40.93 4.16
3197 6186 4.336889 TTTGTAGAGGACTCTTGTGGTG 57.663 45.455 7.21 0.00 40.93 4.17
3198 6187 1.618837 TGTAGAGGACTCTTGTGGTGC 59.381 52.381 7.21 0.00 40.93 5.01
3201 6190 0.389166 GAGGACTCTTGTGGTGCGAG 60.389 60.000 0.00 0.00 0.00 5.03
3202 6191 2.029844 GGACTCTTGTGGTGCGAGC 61.030 63.158 0.00 0.00 0.00 5.03
3204 6193 0.671781 GACTCTTGTGGTGCGAGCAT 60.672 55.000 0.00 0.00 0.00 3.79
3205 6194 0.250467 ACTCTTGTGGTGCGAGCATT 60.250 50.000 0.00 0.00 0.00 3.56
3206 6195 0.445436 CTCTTGTGGTGCGAGCATTC 59.555 55.000 0.00 0.00 0.00 2.67
3207 6196 0.250252 TCTTGTGGTGCGAGCATTCA 60.250 50.000 0.00 0.57 0.00 2.57
3208 6197 0.167470 CTTGTGGTGCGAGCATTCAG 59.833 55.000 0.00 0.00 0.00 3.02
3209 6198 0.250252 TTGTGGTGCGAGCATTCAGA 60.250 50.000 0.00 0.00 0.00 3.27
3210 6199 0.671472 TGTGGTGCGAGCATTCAGAG 60.671 55.000 0.00 0.00 0.00 3.35
3211 6200 1.078918 TGGTGCGAGCATTCAGAGG 60.079 57.895 0.00 0.00 0.00 3.69
3212 6201 2.467826 GGTGCGAGCATTCAGAGGC 61.468 63.158 0.00 0.00 0.00 4.70
3214 6203 0.179100 GTGCGAGCATTCAGAGGCTA 60.179 55.000 0.00 0.00 44.07 3.93
3215 6204 0.536724 TGCGAGCATTCAGAGGCTAA 59.463 50.000 0.00 0.00 44.07 3.09
3216 6205 0.933796 GCGAGCATTCAGAGGCTAAC 59.066 55.000 0.00 0.00 44.07 2.34
3217 6206 1.203928 CGAGCATTCAGAGGCTAACG 58.796 55.000 0.00 0.00 44.07 3.18
3218 6207 1.576356 GAGCATTCAGAGGCTAACGG 58.424 55.000 0.00 0.00 44.07 4.44
3219 6208 1.137086 GAGCATTCAGAGGCTAACGGA 59.863 52.381 0.00 0.00 44.07 4.69
3221 6210 1.808133 GCATTCAGAGGCTAACGGAGG 60.808 57.143 0.00 0.00 0.00 4.30
3222 6211 1.482593 CATTCAGAGGCTAACGGAGGT 59.517 52.381 0.00 0.00 0.00 3.85
3223 6212 2.519771 TTCAGAGGCTAACGGAGGTA 57.480 50.000 0.00 0.00 0.00 3.08
3224 6213 2.519771 TCAGAGGCTAACGGAGGTAA 57.480 50.000 0.00 0.00 0.00 2.85
3226 6215 3.371965 TCAGAGGCTAACGGAGGTAATT 58.628 45.455 0.00 0.00 0.00 1.40
3228 6217 2.158943 AGAGGCTAACGGAGGTAATTGC 60.159 50.000 0.00 0.00 0.00 3.56
3229 6218 1.557832 AGGCTAACGGAGGTAATTGCA 59.442 47.619 0.00 0.00 0.00 4.08
3230 6219 1.669265 GGCTAACGGAGGTAATTGCAC 59.331 52.381 0.00 0.00 0.00 4.57
3231 6220 2.352388 GCTAACGGAGGTAATTGCACA 58.648 47.619 0.00 0.00 0.00 4.57
3233 6222 1.530323 AACGGAGGTAATTGCACACC 58.470 50.000 3.58 3.58 34.86 4.16
3235 6224 1.086696 CGGAGGTAATTGCACACCTG 58.913 55.000 16.53 2.37 45.32 4.00
3236 6225 0.811281 GGAGGTAATTGCACACCTGC 59.189 55.000 16.53 15.46 45.32 4.85
3237 6226 1.614317 GGAGGTAATTGCACACCTGCT 60.614 52.381 19.65 0.00 46.54 4.24
3239 6228 1.888512 AGGTAATTGCACACCTGCTTG 59.111 47.619 12.00 0.00 43.64 4.01
3240 6229 1.613437 GGTAATTGCACACCTGCTTGT 59.387 47.619 4.42 0.00 44.57 3.16
3241 6230 6.620851 GAGGTAATTGCACACCTGCTTGTG 62.621 50.000 16.53 8.74 45.32 3.33
3245 6234 2.481795 ATTGCACACCTGCTTGTGAAAC 60.482 45.455 15.23 5.01 45.90 2.78
3246 6235 4.994415 ATTGCACACCTGCTTGTGAAACA 61.994 43.478 15.23 7.00 45.90 2.83
3266 6255 4.344237 CCAAATGGGCAGGAGGAC 57.656 61.111 0.00 0.00 0.00 3.85
3268 6257 0.918983 CCAAATGGGCAGGAGGACTA 59.081 55.000 0.00 0.00 0.00 2.59
3269 6258 1.133976 CCAAATGGGCAGGAGGACTAG 60.134 57.143 0.00 0.00 0.00 2.57
3270 6259 1.133976 CAAATGGGCAGGAGGACTAGG 60.134 57.143 0.00 0.00 0.00 3.02
3271 6260 1.348775 AATGGGCAGGAGGACTAGGC 61.349 60.000 0.00 0.00 0.00 3.93
3272 6261 2.365635 GGGCAGGAGGACTAGGCA 60.366 66.667 0.00 0.00 0.00 4.75
3273 6262 1.768077 GGGCAGGAGGACTAGGCAT 60.768 63.158 0.00 0.00 0.00 4.40
3274 6263 1.348775 GGGCAGGAGGACTAGGCATT 61.349 60.000 0.00 0.00 0.00 3.56
3275 6264 0.548510 GGCAGGAGGACTAGGCATTT 59.451 55.000 0.00 0.00 0.00 2.32
3276 6265 1.475930 GGCAGGAGGACTAGGCATTTC 60.476 57.143 0.00 0.00 0.00 2.17
3277 6266 1.210478 GCAGGAGGACTAGGCATTTCA 59.790 52.381 0.00 0.00 0.00 2.69
3279 6268 3.686691 GCAGGAGGACTAGGCATTTCATT 60.687 47.826 0.00 0.00 0.00 2.57
3280 6269 4.530875 CAGGAGGACTAGGCATTTCATTT 58.469 43.478 0.00 0.00 0.00 2.32
3281 6270 4.952335 CAGGAGGACTAGGCATTTCATTTT 59.048 41.667 0.00 0.00 0.00 1.82
3284 6273 5.418840 GGAGGACTAGGCATTTCATTTTGAA 59.581 40.000 0.00 0.00 34.03 2.69
3331 6320 9.757227 TTTTTGAATCGGTGATTTTAGACATTT 57.243 25.926 0.00 0.00 31.89 2.32
3332 6321 8.964420 TTTGAATCGGTGATTTTAGACATTTC 57.036 30.769 0.00 0.00 31.89 2.17
3334 6323 8.279970 TGAATCGGTGATTTTAGACATTTCAT 57.720 30.769 0.00 0.00 31.89 2.57
3335 6324 8.739039 TGAATCGGTGATTTTAGACATTTCATT 58.261 29.630 0.00 0.00 31.89 2.57
3336 6325 9.573133 GAATCGGTGATTTTAGACATTTCATTT 57.427 29.630 0.00 0.00 31.89 2.32
3337 6326 9.927668 AATCGGTGATTTTAGACATTTCATTTT 57.072 25.926 0.00 0.00 0.00 1.82
3338 6327 8.741101 TCGGTGATTTTAGACATTTCATTTTG 57.259 30.769 0.00 0.00 0.00 2.44
3339 6328 8.572185 TCGGTGATTTTAGACATTTCATTTTGA 58.428 29.630 0.00 0.00 0.00 2.69
3340 6329 9.190858 CGGTGATTTTAGACATTTCATTTTGAA 57.809 29.630 0.00 0.00 34.03 2.69
3350 6339 9.577222 AGACATTTCATTTTGAATTTTGGGATT 57.423 25.926 0.00 0.00 36.11 3.01
3442 6649 6.605194 TCCATGAACATTTTATGAAATCCCGA 59.395 34.615 0.00 0.00 33.25 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
176 177 3.340928 CTCTGTTGGTGAAGCATCATGA 58.659 45.455 0.00 0.00 38.01 3.07
508 512 0.179001 CCACCGTGGAGGAAAAGGTT 60.179 55.000 12.68 0.00 45.00 3.50
655 699 4.162690 CTACCCCGTGCAGCTCCC 62.163 72.222 0.00 0.00 0.00 4.30
780 845 1.320344 CGGTCCAATCGTCTCCTCCA 61.320 60.000 0.00 0.00 0.00 3.86
846 912 1.265635 TCCCGAAAAACATTGTCGCAG 59.734 47.619 0.00 0.00 33.46 5.18
853 919 1.530323 CCTCCGTCCCGAAAAACATT 58.470 50.000 0.00 0.00 0.00 2.71
894 960 4.431131 AGCTGGGAATGGGCACGG 62.431 66.667 0.00 0.00 0.00 4.94
895 961 3.136123 CAGCTGGGAATGGGCACG 61.136 66.667 5.57 0.00 0.00 5.34
993 1870 4.387343 CCCTTGGCCATGGCTGGT 62.387 66.667 34.70 0.00 45.10 4.00
1005 1886 1.577328 GCACCATCACGTGACCCTTG 61.577 60.000 22.71 15.07 35.68 3.61
1311 2198 2.034687 CACTTCACCCTGGGCCTG 59.965 66.667 14.08 4.61 0.00 4.85
1434 2321 0.043183 TCAGCTGGGGGATCTTGAGA 59.957 55.000 15.13 0.00 0.00 3.27
1509 2413 7.466455 CGCAATCACTCACAAGCTATAAGAATT 60.466 37.037 0.00 0.00 0.00 2.17
1516 2420 3.251479 TCGCAATCACTCACAAGCTAT 57.749 42.857 0.00 0.00 0.00 2.97
1523 2427 5.403766 AGAATATTCGATCGCAATCACTCAC 59.596 40.000 11.09 2.40 31.76 3.51
1527 2431 6.363626 ACAGTAGAATATTCGATCGCAATCAC 59.636 38.462 11.09 0.76 31.76 3.06
2026 3559 3.685139 TTCTTGAACTCTTCGAGCCAT 57.315 42.857 0.00 0.00 40.36 4.40
2035 3568 1.129326 CGACGCGTTTCTTGAACTCT 58.871 50.000 15.53 0.00 36.06 3.24
2061 3600 0.390492 CCAGCTGACGATCATGCCTA 59.610 55.000 17.39 0.00 0.00 3.93
2062 3601 1.145598 CCAGCTGACGATCATGCCT 59.854 57.895 17.39 0.00 0.00 4.75
2332 3977 1.153745 CGCCCTCTTCCTGAAGTCG 60.154 63.158 6.78 3.85 39.38 4.18
2365 4010 0.323302 TGATGCACCTCCAAGCGTTA 59.677 50.000 0.00 0.00 0.00 3.18
2367 4012 1.376424 CTGATGCACCTCCAAGCGT 60.376 57.895 0.00 0.00 0.00 5.07
2371 4016 1.375908 GTCGCTGATGCACCTCCAA 60.376 57.895 0.00 0.00 39.64 3.53
2405 4050 6.881602 AGGTCCACAAATCTAGTGAAATTCTC 59.118 38.462 0.00 0.00 39.30 2.87
2459 4104 5.051039 ATAGCAAACTAATCACACGCATACG 60.051 40.000 0.00 0.00 37.33 3.06
2465 4110 7.463469 TGATACATAGCAAACTAATCACACG 57.537 36.000 0.00 0.00 30.45 4.49
2489 4134 6.176183 GGCAACATAGCTGGTATCATCTTAT 58.824 40.000 0.00 0.00 34.17 1.73
2490 4135 5.551233 GGCAACATAGCTGGTATCATCTTA 58.449 41.667 0.00 0.00 34.17 2.10
2491 4136 4.392940 GGCAACATAGCTGGTATCATCTT 58.607 43.478 0.00 0.00 34.17 2.40
2492 4137 3.555795 CGGCAACATAGCTGGTATCATCT 60.556 47.826 0.00 0.00 37.24 2.90
2493 4138 2.738846 CGGCAACATAGCTGGTATCATC 59.261 50.000 0.00 0.00 37.24 2.92
2495 4140 1.484653 ACGGCAACATAGCTGGTATCA 59.515 47.619 0.00 0.00 45.17 2.15
2497 4142 1.475034 CCACGGCAACATAGCTGGTAT 60.475 52.381 0.00 0.00 45.17 2.73
2498 4143 0.107897 CCACGGCAACATAGCTGGTA 60.108 55.000 0.00 0.00 45.17 3.25
2499 4144 1.377202 CCACGGCAACATAGCTGGT 60.377 57.895 0.00 0.00 45.17 4.00
2501 4146 0.676466 TTCCCACGGCAACATAGCTG 60.676 55.000 0.00 0.00 46.31 4.24
2502 4147 0.255890 ATTCCCACGGCAACATAGCT 59.744 50.000 0.00 0.00 34.17 3.32
2504 4149 2.364632 TCAATTCCCACGGCAACATAG 58.635 47.619 0.00 0.00 0.00 2.23
2505 4150 2.498644 TCAATTCCCACGGCAACATA 57.501 45.000 0.00 0.00 0.00 2.29
2506 4151 1.851304 ATCAATTCCCACGGCAACAT 58.149 45.000 0.00 0.00 0.00 2.71
2507 4152 1.271934 CAATCAATTCCCACGGCAACA 59.728 47.619 0.00 0.00 0.00 3.33
2511 4156 0.246086 TTGCAATCAATTCCCACGGC 59.754 50.000 0.00 0.00 0.00 5.68
2512 4157 2.965572 ATTGCAATCAATTCCCACGG 57.034 45.000 5.99 0.00 39.78 4.94
2513 4158 4.935702 ACATATTGCAATCAATTCCCACG 58.064 39.130 16.86 0.00 42.51 4.94
2533 4178 9.679661 TTCATACAGCCAAATCTTATTAAGACA 57.320 29.630 8.27 0.00 41.01 3.41
2619 4297 9.100554 CGGCGACCCAATTAAACATATATATAA 57.899 33.333 0.00 0.00 0.00 0.98
2620 4298 8.259411 ACGGCGACCCAATTAAACATATATATA 58.741 33.333 16.62 0.00 0.00 0.86
2621 4299 7.107542 ACGGCGACCCAATTAAACATATATAT 58.892 34.615 16.62 0.00 0.00 0.86
2625 4303 3.547746 ACGGCGACCCAATTAAACATAT 58.452 40.909 16.62 0.00 0.00 1.78
2627 4305 1.741145 GACGGCGACCCAATTAAACAT 59.259 47.619 16.62 0.00 0.00 2.71
2628 4306 1.158434 GACGGCGACCCAATTAAACA 58.842 50.000 16.62 0.00 0.00 2.83
2631 4309 2.168936 ACATAGACGGCGACCCAATTAA 59.831 45.455 16.62 0.00 0.00 1.40
2634 4312 1.405872 TACATAGACGGCGACCCAAT 58.594 50.000 16.62 0.00 0.00 3.16
2635 4313 1.405872 ATACATAGACGGCGACCCAA 58.594 50.000 16.62 0.00 0.00 4.12
2636 4314 1.405872 AATACATAGACGGCGACCCA 58.594 50.000 16.62 0.00 0.00 4.51
2637 4315 2.521105 AAATACATAGACGGCGACCC 57.479 50.000 16.62 1.74 0.00 4.46
2638 4316 4.986659 ACAATAAATACATAGACGGCGACC 59.013 41.667 16.62 4.70 0.00 4.79
2640 4318 4.446385 GCACAATAAATACATAGACGGCGA 59.554 41.667 16.62 0.00 0.00 5.54
2641 4319 4.210328 TGCACAATAAATACATAGACGGCG 59.790 41.667 4.80 4.80 0.00 6.46
2642 4320 5.666969 TGCACAATAAATACATAGACGGC 57.333 39.130 0.00 0.00 0.00 5.68
2644 4322 9.321590 CAATCATGCACAATAAATACATAGACG 57.678 33.333 0.00 0.00 0.00 4.18
2665 4343 9.914834 AAATTATACTACCTTAACAGGCAATCA 57.085 29.630 0.00 0.00 45.56 2.57
2669 4347 9.841295 CCTAAAATTATACTACCTTAACAGGCA 57.159 33.333 0.00 0.00 45.56 4.75
2670 4348 9.281371 CCCTAAAATTATACTACCTTAACAGGC 57.719 37.037 0.00 0.00 45.56 4.85
2676 4354 8.362639 CGCTCACCCTAAAATTATACTACCTTA 58.637 37.037 0.00 0.00 0.00 2.69
2678 4356 6.239515 CCGCTCACCCTAAAATTATACTACCT 60.240 42.308 0.00 0.00 0.00 3.08
2679 4357 5.930569 CCGCTCACCCTAAAATTATACTACC 59.069 44.000 0.00 0.00 0.00 3.18
2680 4358 6.752168 TCCGCTCACCCTAAAATTATACTAC 58.248 40.000 0.00 0.00 0.00 2.73
2682 4360 5.881923 TCCGCTCACCCTAAAATTATACT 57.118 39.130 0.00 0.00 0.00 2.12
2683 4361 6.930667 TTTCCGCTCACCCTAAAATTATAC 57.069 37.500 0.00 0.00 0.00 1.47
2685 4363 7.418337 AATTTTCCGCTCACCCTAAAATTAT 57.582 32.000 0.00 0.00 37.74 1.28
2686 4364 6.844097 AATTTTCCGCTCACCCTAAAATTA 57.156 33.333 0.00 0.00 37.74 1.40
2687 4365 5.738619 AATTTTCCGCTCACCCTAAAATT 57.261 34.783 0.00 0.00 35.81 1.82
2689 4367 5.184287 CCTAAATTTTCCGCTCACCCTAAAA 59.816 40.000 0.00 0.00 0.00 1.52
2692 4370 3.520317 TCCTAAATTTTCCGCTCACCCTA 59.480 43.478 0.00 0.00 0.00 3.53
2693 4371 2.307686 TCCTAAATTTTCCGCTCACCCT 59.692 45.455 0.00 0.00 0.00 4.34
2695 4373 3.606687 TCTCCTAAATTTTCCGCTCACC 58.393 45.455 0.00 0.00 0.00 4.02
2696 4374 4.876107 TGATCTCCTAAATTTTCCGCTCAC 59.124 41.667 0.00 0.00 0.00 3.51
2697 4375 4.876107 GTGATCTCCTAAATTTTCCGCTCA 59.124 41.667 0.00 0.00 0.00 4.26
2699 4377 4.080299 AGGTGATCTCCTAAATTTTCCGCT 60.080 41.667 14.73 0.00 35.87 5.52
2700 4378 4.200092 AGGTGATCTCCTAAATTTTCCGC 58.800 43.478 14.73 0.00 35.87 5.54
2701 4379 7.445945 AGATAGGTGATCTCCTAAATTTTCCG 58.554 38.462 23.70 0.00 41.37 4.30
2979 4657 6.661377 TGAGTAATGCTACATTGCCCTAAAAA 59.339 34.615 3.11 0.00 0.00 1.94
2981 4659 5.750524 TGAGTAATGCTACATTGCCCTAAA 58.249 37.500 3.11 0.00 0.00 1.85
2982 4660 5.366482 TGAGTAATGCTACATTGCCCTAA 57.634 39.130 3.11 0.00 0.00 2.69
2983 4661 5.307976 AGATGAGTAATGCTACATTGCCCTA 59.692 40.000 3.11 0.00 0.00 3.53
2984 4662 3.931907 TGAGTAATGCTACATTGCCCT 57.068 42.857 3.11 0.00 0.00 5.19
2985 4663 4.392940 AGATGAGTAATGCTACATTGCCC 58.607 43.478 3.11 0.00 0.00 5.36
2986 4664 7.678947 ATTAGATGAGTAATGCTACATTGCC 57.321 36.000 3.11 0.00 0.00 4.52
2987 4665 8.562892 ACAATTAGATGAGTAATGCTACATTGC 58.437 33.333 3.11 1.90 0.00 3.56
2998 4676 9.929180 GCACATCCTATACAATTAGATGAGTAA 57.071 33.333 5.38 0.00 0.00 2.24
2999 4677 8.244113 CGCACATCCTATACAATTAGATGAGTA 58.756 37.037 5.38 0.00 0.00 2.59
3000 4678 7.093354 CGCACATCCTATACAATTAGATGAGT 58.907 38.462 5.38 0.00 0.00 3.41
3001 4679 6.533012 CCGCACATCCTATACAATTAGATGAG 59.467 42.308 5.38 0.00 0.00 2.90
3003 4681 5.063944 GCCGCACATCCTATACAATTAGATG 59.936 44.000 0.00 0.00 0.00 2.90
3004 4682 5.178797 GCCGCACATCCTATACAATTAGAT 58.821 41.667 0.00 0.00 0.00 1.98
3005 4683 4.566004 GCCGCACATCCTATACAATTAGA 58.434 43.478 0.00 0.00 0.00 2.10
3006 4684 3.367932 CGCCGCACATCCTATACAATTAG 59.632 47.826 0.00 0.00 0.00 1.73
3007 4685 3.006003 TCGCCGCACATCCTATACAATTA 59.994 43.478 0.00 0.00 0.00 1.40
3008 4686 2.143122 CGCCGCACATCCTATACAATT 58.857 47.619 0.00 0.00 0.00 2.32
3009 4687 1.343142 TCGCCGCACATCCTATACAAT 59.657 47.619 0.00 0.00 0.00 2.71
3011 4689 0.031585 GTCGCCGCACATCCTATACA 59.968 55.000 0.00 0.00 0.00 2.29
3013 4691 1.538512 GTAGTCGCCGCACATCCTATA 59.461 52.381 0.00 0.00 0.00 1.31
3014 4692 0.314302 GTAGTCGCCGCACATCCTAT 59.686 55.000 0.00 0.00 0.00 2.57
3015 4693 0.750546 AGTAGTCGCCGCACATCCTA 60.751 55.000 0.00 0.00 0.00 2.94
3017 4695 0.314302 ATAGTAGTCGCCGCACATCC 59.686 55.000 0.00 0.00 0.00 3.51
3018 4696 2.052157 GAATAGTAGTCGCCGCACATC 58.948 52.381 0.00 0.00 0.00 3.06
3019 4697 1.681793 AGAATAGTAGTCGCCGCACAT 59.318 47.619 0.00 0.00 0.00 3.21
3020 4698 1.100510 AGAATAGTAGTCGCCGCACA 58.899 50.000 0.00 0.00 0.00 4.57
3021 4699 2.547211 TCTAGAATAGTAGTCGCCGCAC 59.453 50.000 0.00 0.00 40.38 5.34
3022 4700 2.547211 GTCTAGAATAGTAGTCGCCGCA 59.453 50.000 0.00 0.00 40.38 5.69
3023 4701 2.547211 TGTCTAGAATAGTAGTCGCCGC 59.453 50.000 0.00 0.00 40.38 6.53
3024 4702 3.558829 TGTGTCTAGAATAGTAGTCGCCG 59.441 47.826 0.00 0.00 40.38 6.46
3025 4703 5.496133 TTGTGTCTAGAATAGTAGTCGCC 57.504 43.478 0.00 0.00 40.38 5.54
3028 4706 9.303537 GGTGAAATTGTGTCTAGAATAGTAGTC 57.696 37.037 0.00 0.00 40.38 2.59
3029 4707 9.036980 AGGTGAAATTGTGTCTAGAATAGTAGT 57.963 33.333 0.00 0.00 40.38 2.73
3036 4714 8.918202 ACATAAAGGTGAAATTGTGTCTAGAA 57.082 30.769 0.00 0.00 0.00 2.10
3038 4716 8.322906 TGACATAAAGGTGAAATTGTGTCTAG 57.677 34.615 13.80 0.00 43.71 2.43
3039 4717 8.684386 TTGACATAAAGGTGAAATTGTGTCTA 57.316 30.769 13.80 6.30 43.71 2.59
3040 4718 7.581213 TTGACATAAAGGTGAAATTGTGTCT 57.419 32.000 13.80 0.00 43.71 3.41
3041 4719 8.816640 AATTGACATAAAGGTGAAATTGTGTC 57.183 30.769 8.01 8.01 43.66 3.67
3043 4721 8.427012 CGAAATTGACATAAAGGTGAAATTGTG 58.573 33.333 0.00 0.00 0.00 3.33
3045 4723 8.519492 ACGAAATTGACATAAAGGTGAAATTG 57.481 30.769 0.00 0.00 0.00 2.32
3050 4728 8.447833 GTTGATACGAAATTGACATAAAGGTGA 58.552 33.333 0.00 0.00 0.00 4.02
3051 4729 7.696453 GGTTGATACGAAATTGACATAAAGGTG 59.304 37.037 0.00 0.00 0.00 4.00
3052 4730 7.148137 GGGTTGATACGAAATTGACATAAAGGT 60.148 37.037 0.00 0.00 0.00 3.50
3054 4732 7.757526 TGGGTTGATACGAAATTGACATAAAG 58.242 34.615 0.00 0.00 0.00 1.85
3060 4877 7.220108 GCTTATTTGGGTTGATACGAAATTGAC 59.780 37.037 0.00 0.00 0.00 3.18
3063 4880 6.094325 TCGCTTATTTGGGTTGATACGAAATT 59.906 34.615 0.00 0.00 0.00 1.82
3065 4882 4.936411 TCGCTTATTTGGGTTGATACGAAA 59.064 37.500 0.00 0.00 0.00 3.46
3067 4884 4.126208 TCGCTTATTTGGGTTGATACGA 57.874 40.909 0.00 0.00 0.00 3.43
3068 4885 4.509970 TCATCGCTTATTTGGGTTGATACG 59.490 41.667 0.00 0.00 0.00 3.06
3070 4887 5.432645 TGTCATCGCTTATTTGGGTTGATA 58.567 37.500 0.00 0.00 33.41 2.15
3071 4888 4.269183 TGTCATCGCTTATTTGGGTTGAT 58.731 39.130 0.00 0.00 33.41 2.57
3098 6087 4.012374 GAGATCCAGTGCTCCATGAAAAA 58.988 43.478 0.00 0.00 0.00 1.94
3099 6088 3.614092 GAGATCCAGTGCTCCATGAAAA 58.386 45.455 0.00 0.00 0.00 2.29
3114 6103 4.125703 GTGTCATCATTGAGTGGAGATCC 58.874 47.826 0.00 0.00 30.85 3.36
3115 6104 4.809958 CAGTGTCATCATTGAGTGGAGATC 59.190 45.833 0.00 0.00 33.95 2.75
3117 6106 3.055602 CCAGTGTCATCATTGAGTGGAGA 60.056 47.826 0.00 0.00 33.20 3.71
3118 6107 3.055602 TCCAGTGTCATCATTGAGTGGAG 60.056 47.826 0.00 0.00 34.63 3.86
3119 6108 2.905736 TCCAGTGTCATCATTGAGTGGA 59.094 45.455 0.00 0.00 36.08 4.02
3120 6109 3.339253 TCCAGTGTCATCATTGAGTGG 57.661 47.619 0.00 0.00 33.95 4.00
3121 6110 4.767478 AGATCCAGTGTCATCATTGAGTG 58.233 43.478 0.00 0.00 33.95 3.51
3124 6113 4.713321 TGAGAGATCCAGTGTCATCATTGA 59.287 41.667 0.00 0.00 33.95 2.57
3125 6114 4.809958 GTGAGAGATCCAGTGTCATCATTG 59.190 45.833 0.00 0.00 0.00 2.82
3126 6115 4.141756 GGTGAGAGATCCAGTGTCATCATT 60.142 45.833 0.00 0.00 0.00 2.57
3128 6117 2.762887 GGTGAGAGATCCAGTGTCATCA 59.237 50.000 0.00 0.00 0.00 3.07
3131 6120 2.309136 TGGTGAGAGATCCAGTGTCA 57.691 50.000 0.00 0.00 0.00 3.58
3132 6121 3.685139 TTTGGTGAGAGATCCAGTGTC 57.315 47.619 0.00 0.00 35.05 3.67
3133 6122 3.808618 GCTTTTGGTGAGAGATCCAGTGT 60.809 47.826 0.00 0.00 35.05 3.55
3134 6123 2.746362 GCTTTTGGTGAGAGATCCAGTG 59.254 50.000 0.00 0.00 35.05 3.66
3136 6125 3.055240 AGAGCTTTTGGTGAGAGATCCAG 60.055 47.826 0.00 0.00 35.05 3.86
3137 6126 2.909006 AGAGCTTTTGGTGAGAGATCCA 59.091 45.455 0.00 0.00 0.00 3.41
3138 6127 3.055530 TCAGAGCTTTTGGTGAGAGATCC 60.056 47.826 0.00 0.00 0.00 3.36
3139 6128 4.199432 TCAGAGCTTTTGGTGAGAGATC 57.801 45.455 0.00 0.00 0.00 2.75
3140 6129 4.515361 CATCAGAGCTTTTGGTGAGAGAT 58.485 43.478 6.59 0.00 0.00 2.75
3141 6130 3.307269 CCATCAGAGCTTTTGGTGAGAGA 60.307 47.826 12.53 0.00 0.00 3.10
3142 6131 3.008330 CCATCAGAGCTTTTGGTGAGAG 58.992 50.000 12.53 0.00 0.00 3.20
3143 6132 2.877300 GCCATCAGAGCTTTTGGTGAGA 60.877 50.000 12.53 0.00 0.00 3.27
3144 6133 1.471684 GCCATCAGAGCTTTTGGTGAG 59.528 52.381 12.53 5.64 0.00 3.51
3145 6134 1.202915 TGCCATCAGAGCTTTTGGTGA 60.203 47.619 12.53 1.09 0.00 4.02
3146 6135 1.250328 TGCCATCAGAGCTTTTGGTG 58.750 50.000 5.65 5.65 0.00 4.17
3148 6137 2.494471 TCATTGCCATCAGAGCTTTTGG 59.506 45.455 0.00 0.00 0.00 3.28
3149 6138 3.861276 TCATTGCCATCAGAGCTTTTG 57.139 42.857 0.00 0.00 0.00 2.44
3151 6140 3.159472 TGTTCATTGCCATCAGAGCTTT 58.841 40.909 0.00 0.00 0.00 3.51
3152 6141 2.799017 TGTTCATTGCCATCAGAGCTT 58.201 42.857 0.00 0.00 0.00 3.74
3154 6143 3.581024 TTTGTTCATTGCCATCAGAGC 57.419 42.857 0.00 0.00 0.00 4.09
3155 6144 6.425721 ACAAATTTTGTTCATTGCCATCAGAG 59.574 34.615 8.97 0.00 42.22 3.35
3156 6145 6.289834 ACAAATTTTGTTCATTGCCATCAGA 58.710 32.000 8.97 0.00 42.22 3.27
3159 6148 7.063780 CCTCTACAAATTTTGTTCATTGCCATC 59.936 37.037 19.15 0.00 42.22 3.51
3161 6150 6.041409 TCCTCTACAAATTTTGTTCATTGCCA 59.959 34.615 19.15 0.00 42.22 4.92
3162 6151 6.366061 GTCCTCTACAAATTTTGTTCATTGCC 59.634 38.462 19.15 1.07 42.22 4.52
3163 6152 7.147976 AGTCCTCTACAAATTTTGTTCATTGC 58.852 34.615 19.15 7.50 42.22 3.56
3164 6153 8.571336 AGAGTCCTCTACAAATTTTGTTCATTG 58.429 33.333 19.15 6.22 44.76 2.82
3165 6154 8.697507 AGAGTCCTCTACAAATTTTGTTCATT 57.302 30.769 19.15 0.00 44.76 2.57
3166 6155 8.571336 CAAGAGTCCTCTACAAATTTTGTTCAT 58.429 33.333 19.15 0.76 44.76 2.57
3167 6156 7.556275 ACAAGAGTCCTCTACAAATTTTGTTCA 59.444 33.333 19.15 6.42 44.76 3.18
3168 6157 7.857885 CACAAGAGTCCTCTACAAATTTTGTTC 59.142 37.037 19.15 9.38 44.76 3.18
3169 6158 7.201821 CCACAAGAGTCCTCTACAAATTTTGTT 60.202 37.037 19.15 0.31 44.76 2.83
3175 6164 4.804261 GCACCACAAGAGTCCTCTACAAAT 60.804 45.833 0.00 0.00 39.39 2.32
3177 6166 2.037251 GCACCACAAGAGTCCTCTACAA 59.963 50.000 0.00 0.00 39.39 2.41
3178 6167 1.618837 GCACCACAAGAGTCCTCTACA 59.381 52.381 0.00 0.00 39.39 2.74
3179 6168 1.402984 CGCACCACAAGAGTCCTCTAC 60.403 57.143 0.00 0.00 39.39 2.59
3180 6169 0.888619 CGCACCACAAGAGTCCTCTA 59.111 55.000 0.00 0.00 39.39 2.43
3182 6171 0.389166 CTCGCACCACAAGAGTCCTC 60.389 60.000 0.00 0.00 0.00 3.71
3184 6173 2.029844 GCTCGCACCACAAGAGTCC 61.030 63.158 0.00 0.00 34.69 3.85
3185 6174 0.671781 ATGCTCGCACCACAAGAGTC 60.672 55.000 0.00 0.00 34.69 3.36
3186 6175 0.250467 AATGCTCGCACCACAAGAGT 60.250 50.000 0.00 0.00 34.69 3.24
3187 6176 0.445436 GAATGCTCGCACCACAAGAG 59.555 55.000 0.00 0.00 35.28 2.85
3188 6177 0.250252 TGAATGCTCGCACCACAAGA 60.250 50.000 0.00 0.00 0.00 3.02
3189 6178 0.167470 CTGAATGCTCGCACCACAAG 59.833 55.000 0.00 0.00 0.00 3.16
3190 6179 0.250252 TCTGAATGCTCGCACCACAA 60.250 50.000 0.00 0.00 0.00 3.33
3191 6180 0.671472 CTCTGAATGCTCGCACCACA 60.671 55.000 0.00 0.00 0.00 4.17
3192 6181 1.364626 CCTCTGAATGCTCGCACCAC 61.365 60.000 0.00 0.00 0.00 4.16
3193 6182 1.078918 CCTCTGAATGCTCGCACCA 60.079 57.895 0.00 0.00 0.00 4.17
3194 6183 2.467826 GCCTCTGAATGCTCGCACC 61.468 63.158 0.00 0.00 0.00 5.01
3195 6184 0.179100 TAGCCTCTGAATGCTCGCAC 60.179 55.000 4.79 0.00 39.00 5.34
3196 6185 0.536724 TTAGCCTCTGAATGCTCGCA 59.463 50.000 4.79 0.00 39.00 5.10
3197 6186 0.933796 GTTAGCCTCTGAATGCTCGC 59.066 55.000 4.79 0.00 39.00 5.03
3198 6187 1.203928 CGTTAGCCTCTGAATGCTCG 58.796 55.000 4.79 1.31 39.00 5.03
3201 6190 1.576356 CTCCGTTAGCCTCTGAATGC 58.424 55.000 0.00 0.00 0.00 3.56
3202 6191 1.482593 ACCTCCGTTAGCCTCTGAATG 59.517 52.381 0.00 0.00 0.00 2.67
3204 6193 2.519771 TACCTCCGTTAGCCTCTGAA 57.480 50.000 0.00 0.00 0.00 3.02
3205 6194 2.519771 TTACCTCCGTTAGCCTCTGA 57.480 50.000 0.00 0.00 0.00 3.27
3206 6195 3.458189 CAATTACCTCCGTTAGCCTCTG 58.542 50.000 0.00 0.00 0.00 3.35
3207 6196 2.158943 GCAATTACCTCCGTTAGCCTCT 60.159 50.000 0.00 0.00 0.00 3.69
3208 6197 2.210961 GCAATTACCTCCGTTAGCCTC 58.789 52.381 0.00 0.00 0.00 4.70
3209 6198 1.557832 TGCAATTACCTCCGTTAGCCT 59.442 47.619 0.00 0.00 0.00 4.58
3210 6199 1.669265 GTGCAATTACCTCCGTTAGCC 59.331 52.381 0.00 0.00 0.00 3.93
3211 6200 2.095372 GTGTGCAATTACCTCCGTTAGC 59.905 50.000 0.00 0.00 0.00 3.09
3212 6201 2.676342 GGTGTGCAATTACCTCCGTTAG 59.324 50.000 8.39 0.00 34.11 2.34
3213 6202 2.303600 AGGTGTGCAATTACCTCCGTTA 59.696 45.455 11.62 0.00 43.69 3.18
3214 6203 1.073284 AGGTGTGCAATTACCTCCGTT 59.927 47.619 11.62 0.00 43.69 4.44
3215 6204 0.690762 AGGTGTGCAATTACCTCCGT 59.309 50.000 11.62 0.00 43.69 4.69
3216 6205 1.086696 CAGGTGTGCAATTACCTCCG 58.913 55.000 13.89 3.21 45.26 4.63
3224 6213 6.983776 GTGTTTCACAAGCAGGTGTGCAAT 62.984 45.833 9.61 0.00 46.97 3.56
3226 6215 4.342063 GTGTTTCACAAGCAGGTGTGCA 62.342 50.000 9.61 0.00 46.97 4.57
3229 6218 1.102978 GGTGTTTCACAAGCAGGTGT 58.897 50.000 7.52 0.00 39.76 4.16
3230 6219 0.385390 GGGTGTTTCACAAGCAGGTG 59.615 55.000 1.65 1.65 40.16 4.00
3231 6220 0.755327 GGGGTGTTTCACAAGCAGGT 60.755 55.000 2.41 0.00 35.86 4.00
3233 6222 1.110442 TTGGGGTGTTTCACAAGCAG 58.890 50.000 2.41 0.00 35.86 4.24
3234 6223 1.561643 TTTGGGGTGTTTCACAAGCA 58.438 45.000 2.41 0.00 35.86 3.91
3235 6224 2.482864 CATTTGGGGTGTTTCACAAGC 58.517 47.619 2.41 0.00 35.86 4.01
3236 6225 3.110447 CCATTTGGGGTGTTTCACAAG 57.890 47.619 2.41 0.00 35.86 3.16
3249 6238 0.918983 TAGTCCTCCTGCCCATTTGG 59.081 55.000 0.00 0.00 37.09 3.28
3250 6239 1.133976 CCTAGTCCTCCTGCCCATTTG 60.134 57.143 0.00 0.00 0.00 2.32
3252 6241 1.348775 GCCTAGTCCTCCTGCCCATT 61.349 60.000 0.00 0.00 0.00 3.16
3253 6242 1.768077 GCCTAGTCCTCCTGCCCAT 60.768 63.158 0.00 0.00 0.00 4.00
3254 6243 2.365635 GCCTAGTCCTCCTGCCCA 60.366 66.667 0.00 0.00 0.00 5.36
3255 6244 1.348775 AATGCCTAGTCCTCCTGCCC 61.349 60.000 0.00 0.00 0.00 5.36
3256 6245 0.548510 AAATGCCTAGTCCTCCTGCC 59.451 55.000 0.00 0.00 0.00 4.85
3257 6246 1.210478 TGAAATGCCTAGTCCTCCTGC 59.790 52.381 0.00 0.00 0.00 4.85
3258 6247 3.853355 ATGAAATGCCTAGTCCTCCTG 57.147 47.619 0.00 0.00 0.00 3.86
3259 6248 4.870021 AAATGAAATGCCTAGTCCTCCT 57.130 40.909 0.00 0.00 0.00 3.69
3261 6250 6.515272 TTCAAAATGAAATGCCTAGTCCTC 57.485 37.500 0.00 0.00 32.71 3.71
3262 6251 6.916360 TTTCAAAATGAAATGCCTAGTCCT 57.084 33.333 1.57 0.00 41.02 3.85
3305 6294 9.757227 AAATGTCTAAAATCACCGATTCAAAAA 57.243 25.926 0.00 0.00 30.29 1.94
3306 6295 9.405587 GAAATGTCTAAAATCACCGATTCAAAA 57.594 29.630 0.00 0.00 30.29 2.44
3307 6296 8.572185 TGAAATGTCTAAAATCACCGATTCAAA 58.428 29.630 0.00 0.00 30.29 2.69
3308 6297 8.105097 TGAAATGTCTAAAATCACCGATTCAA 57.895 30.769 0.00 0.00 30.29 2.69
3309 6298 7.680442 TGAAATGTCTAAAATCACCGATTCA 57.320 32.000 0.00 0.00 30.29 2.57
3311 6300 9.927668 AAAATGAAATGTCTAAAATCACCGATT 57.072 25.926 0.00 0.00 33.25 3.34
3312 6301 9.357652 CAAAATGAAATGTCTAAAATCACCGAT 57.642 29.630 0.00 0.00 0.00 4.18
3314 6303 8.741101 TCAAAATGAAATGTCTAAAATCACCG 57.259 30.769 0.00 0.00 0.00 4.94
3324 6313 9.577222 AATCCCAAAATTCAAAATGAAATGTCT 57.423 25.926 0.00 0.00 40.12 3.41
3400 6606 9.081997 TGTTCATGGATTTAAAAATATTGACGC 57.918 29.630 0.00 0.00 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.