Multiple sequence alignment - TraesCS5A01G393700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G393700 chr5A 100.000 7762 0 0 1 7762 589294989 589287228 0.000000e+00 14334.0
1 TraesCS5A01G393700 chr5A 87.731 1728 197 10 3052 4767 589291332 589289608 0.000000e+00 2002.0
2 TraesCS5A01G393700 chr5A 87.731 1728 197 10 3658 5382 589291938 589290223 0.000000e+00 2002.0
3 TraesCS5A01G393700 chr5A 82.985 2198 355 14 3073 5259 589291797 589289608 0.000000e+00 1969.0
4 TraesCS5A01G393700 chr5A 82.985 2198 355 14 3193 5382 589291917 589289731 0.000000e+00 1969.0
5 TraesCS5A01G393700 chr5A 82.594 2074 343 13 3069 5128 589291684 589289615 0.000000e+00 1814.0
6 TraesCS5A01G393700 chr5A 82.602 2075 341 15 3306 5375 589291921 589289862 0.000000e+00 1814.0
7 TraesCS5A01G393700 chr5A 82.540 1976 326 14 3412 5382 589291938 589289977 0.000000e+00 1720.0
8 TraesCS5A01G393700 chr5A 81.405 1850 331 8 3535 5382 589291938 589290100 0.000000e+00 1498.0
9 TraesCS5A01G393700 chr5A 81.734 865 147 6 3052 3906 589290471 589289608 0.000000e+00 712.0
10 TraesCS5A01G393700 chr5A 80.997 742 130 8 3052 3783 589290348 589289608 5.220000e-161 579.0
11 TraesCS5A01G393700 chr5A 91.971 137 11 0 558 694 589294293 589294157 7.950000e-45 193.0
12 TraesCS5A01G393700 chr5A 91.971 137 11 0 697 833 589294432 589294296 7.950000e-45 193.0
13 TraesCS5A01G393700 chr5A 76.923 260 32 14 5671 5926 584600210 584600445 1.060000e-23 122.0
14 TraesCS5A01G393700 chr5B 94.796 3670 169 12 718 4380 575972004 575968350 0.000000e+00 5699.0
15 TraesCS5A01G393700 chr5B 87.944 3492 309 33 3735 7169 575968202 575964766 0.000000e+00 4013.0
16 TraesCS5A01G393700 chr5B 90.736 1522 141 0 3861 5382 575968199 575966678 0.000000e+00 2030.0
17 TraesCS5A01G393700 chr5B 88.591 745 48 14 1 722 575972905 575972175 0.000000e+00 870.0
18 TraesCS5A01G393700 chr5B 87.500 120 11 4 579 694 575972004 575971885 1.360000e-27 135.0
19 TraesCS5A01G393700 chr5B 94.737 38 2 0 7331 7368 15567912 15567949 8.410000e-05 60.2
20 TraesCS5A01G393700 chr5D 95.101 2919 123 11 506 3416 469176947 469174041 0.000000e+00 4580.0
21 TraesCS5A01G393700 chr5D 91.217 3245 222 19 4071 7285 469174040 469170829 0.000000e+00 4355.0
22 TraesCS5A01G393700 chr5D 85.947 491 41 16 1 478 469177419 469176944 4.180000e-137 499.0
23 TraesCS5A01G393700 chr5D 91.124 169 14 1 7568 7736 469170757 469170590 2.180000e-55 228.0
24 TraesCS5A01G393700 chr5D 89.855 138 12 2 697 832 469176895 469176758 8.000000e-40 176.0
25 TraesCS5A01G393700 chr3B 82.353 578 77 17 2273 2837 436396677 436397242 5.450000e-131 479.0
26 TraesCS5A01G393700 chr2B 79.288 758 102 31 2088 2837 549378600 549379310 5.450000e-131 479.0
27 TraesCS5A01G393700 chr6B 82.149 577 79 16 2273 2837 646290726 646291290 2.530000e-129 473.0
28 TraesCS5A01G393700 chr1B 81.961 571 78 15 2279 2837 610183579 610183022 1.970000e-125 460.0
29 TraesCS5A01G393700 chr2A 78.992 238 28 11 5671 5904 48431321 48431102 8.120000e-30 143.0
30 TraesCS5A01G393700 chr2A 78.205 234 28 13 5685 5915 537231716 537231929 2.270000e-25 128.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G393700 chr5A 589287228 589294989 7761 True 14334.000000 14334 100.0000 1 7762 1 chr5A.!!$R1 7761
1 TraesCS5A01G393700 chr5A 589289608 589294432 4824 True 1372.083333 2002 84.7705 558 5382 12 chr5A.!!$R2 4824
2 TraesCS5A01G393700 chr5B 575964766 575972905 8139 True 2549.400000 5699 89.9134 1 7169 5 chr5B.!!$R1 7168
3 TraesCS5A01G393700 chr5D 469170590 469177419 6829 True 1967.600000 4580 90.6488 1 7736 5 chr5D.!!$R1 7735
4 TraesCS5A01G393700 chr3B 436396677 436397242 565 False 479.000000 479 82.3530 2273 2837 1 chr3B.!!$F1 564
5 TraesCS5A01G393700 chr2B 549378600 549379310 710 False 479.000000 479 79.2880 2088 2837 1 chr2B.!!$F1 749
6 TraesCS5A01G393700 chr6B 646290726 646291290 564 False 473.000000 473 82.1490 2273 2837 1 chr6B.!!$F1 564
7 TraesCS5A01G393700 chr1B 610183022 610183579 557 True 460.000000 460 81.9610 2279 2837 1 chr1B.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 428 0.180171 TGGATGGTATTCGGCTGTGG 59.820 55.000 0.00 0.00 0.00 4.17 F
438 465 4.789075 GCTTGCTGGCCACATGCG 62.789 66.667 21.48 7.35 42.61 4.73 F
5382 6402 7.040686 GCTTAAGAAGGTTGGACAACTTGATTA 60.041 37.037 14.14 7.48 40.94 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
5384 6404 0.400213 TGAGGAAATCCAACGTGGCT 59.600 50.0 1.67 0.0 37.47 4.75 R
5385 6405 0.804989 CTGAGGAAATCCAACGTGGC 59.195 55.0 1.67 0.0 37.47 5.01 R
7742 8822 0.028770 CAACGCTTTCTCGTGCCAAA 59.971 50.0 0.00 0.0 42.46 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 174 2.613223 GCTCCTCGCTAAACCTTCTTGT 60.613 50.000 0.00 0.00 35.14 3.16
158 180 2.286772 CGCTAAACCTTCTTGTTTGCGT 60.287 45.455 17.18 0.00 43.04 5.24
197 219 3.015312 GCTCTCCGGGTAAGCGGTT 62.015 63.158 4.76 4.76 0.00 4.44
199 221 0.384669 CTCTCCGGGTAAGCGGTTAG 59.615 60.000 7.43 0.00 0.00 2.34
200 222 1.039233 TCTCCGGGTAAGCGGTTAGG 61.039 60.000 7.43 6.07 0.00 2.69
201 223 2.202974 CCGGGTAAGCGGTTAGGC 60.203 66.667 7.43 0.00 0.00 3.93
203 225 1.227176 CGGGTAAGCGGTTAGGCTC 60.227 63.158 7.43 0.00 43.93 4.70
305 327 8.713036 TCAAACAGTACCTTAGGGTTTTAGTTA 58.287 33.333 0.07 0.00 44.73 2.24
326 350 4.028993 AGTTAATTAGGTGTGGTGGTGG 57.971 45.455 0.00 0.00 0.00 4.61
327 351 3.396611 AGTTAATTAGGTGTGGTGGTGGT 59.603 43.478 0.00 0.00 0.00 4.16
328 352 2.286365 AATTAGGTGTGGTGGTGGTG 57.714 50.000 0.00 0.00 0.00 4.17
346 370 2.354805 GGTGTTAAGCTCGGTTCCTGAT 60.355 50.000 0.00 0.00 0.00 2.90
356 380 2.026636 TCGGTTCCTGATTTTGGGTAGG 60.027 50.000 0.00 0.00 0.00 3.18
360 387 4.010349 GTTCCTGATTTTGGGTAGGAGTG 58.990 47.826 0.00 0.00 40.21 3.51
376 403 1.532868 GAGTGCTGCCTTACTGTTGTG 59.467 52.381 0.00 0.00 0.00 3.33
381 408 2.100749 GCTGCCTTACTGTTGTGGTTTT 59.899 45.455 0.00 0.00 0.00 2.43
388 415 3.817709 ACTGTTGTGGTTTTTGGATGG 57.182 42.857 0.00 0.00 0.00 3.51
389 416 3.103742 ACTGTTGTGGTTTTTGGATGGT 58.896 40.909 0.00 0.00 0.00 3.55
395 422 3.508012 TGTGGTTTTTGGATGGTATTCGG 59.492 43.478 0.00 0.00 0.00 4.30
401 428 0.180171 TGGATGGTATTCGGCTGTGG 59.820 55.000 0.00 0.00 0.00 4.17
438 465 4.789075 GCTTGCTGGCCACATGCG 62.789 66.667 21.48 7.35 42.61 4.73
5382 6402 7.040686 GCTTAAGAAGGTTGGACAACTTGATTA 60.041 37.037 14.14 7.48 40.94 1.75
5383 6403 8.934023 TTAAGAAGGTTGGACAACTTGATTAT 57.066 30.769 14.14 1.20 40.94 1.28
5385 6405 8.567285 AAGAAGGTTGGACAACTTGATTATAG 57.433 34.615 14.14 0.00 40.94 1.31
5390 6410 4.188462 TGGACAACTTGATTATAGCCACG 58.812 43.478 0.00 0.00 0.00 4.94
5397 6417 5.437060 ACTTGATTATAGCCACGTTGGATT 58.563 37.500 8.04 0.00 40.96 3.01
5405 6425 1.453155 CCACGTTGGATTTCCTCAGG 58.547 55.000 0.00 0.00 40.96 3.86
5445 6465 1.402787 AGCAAACCTTCACACCCAAG 58.597 50.000 0.00 0.00 0.00 3.61
5491 6511 2.571216 CGAGGTGGGTTCACGGTCT 61.571 63.158 0.00 0.00 44.50 3.85
5514 6534 0.668535 AAGCGGAAAAGGTCAACAGC 59.331 50.000 0.00 0.00 0.00 4.40
5585 6605 4.418392 GCAATGTAGAAGGTGATTGCTTG 58.582 43.478 0.00 0.00 44.72 4.01
5656 6677 6.480763 TCATGTATTTGGGCTCTTCTGTTTA 58.519 36.000 0.00 0.00 0.00 2.01
5662 6683 2.884639 TGGGCTCTTCTGTTTAACTTGC 59.115 45.455 0.00 0.00 0.00 4.01
5704 6725 2.925563 GGCTAATGCATGCTTTGTGTTC 59.074 45.455 24.68 11.05 41.91 3.18
5706 6727 4.240096 GCTAATGCATGCTTTGTGTTCTT 58.760 39.130 24.68 2.73 39.41 2.52
5708 6729 5.164022 GCTAATGCATGCTTTGTGTTCTTTC 60.164 40.000 24.68 4.56 39.41 2.62
5824 6845 5.833406 TGTCGCCACATCAATTTCATATT 57.167 34.783 0.00 0.00 0.00 1.28
5871 6892 2.693074 AGGTTGACGGTGAAAAAGCAAT 59.307 40.909 0.00 0.00 0.00 3.56
6056 7077 6.703607 CAGTGATATATCTGACCCAGTTCAAC 59.296 42.308 13.79 0.00 34.02 3.18
6063 7084 1.754226 TGACCCAGTTCAACCTTTTGC 59.246 47.619 0.00 0.00 32.17 3.68
6076 7097 0.314935 CTTTTGCCAGCGACACCAAT 59.685 50.000 0.00 0.00 0.00 3.16
6124 7145 8.519492 TGTAAGCATCTTTTACTTTTGAATGC 57.481 30.769 0.00 0.00 33.29 3.56
6151 7172 4.323945 CCCAGTTTAACATACCAGCTACCA 60.324 45.833 0.00 0.00 0.00 3.25
6179 7200 0.107848 TTTAGTGCCTTAGGAGCGGC 60.108 55.000 0.69 0.00 46.46 6.53
6199 7220 3.315191 GGCTTATGCAAAAATCTAGCGGA 59.685 43.478 2.72 0.00 41.91 5.54
6200 7221 4.202010 GGCTTATGCAAAAATCTAGCGGAA 60.202 41.667 2.72 0.00 41.91 4.30
6365 7415 6.605594 AGGAGGACTGTAAACTCTTATCTGAG 59.394 42.308 6.59 0.00 39.78 3.35
6394 7444 1.153568 CCTTCGATGCGAGGCTTGA 60.154 57.895 5.76 0.00 37.14 3.02
6405 7455 0.741221 GAGGCTTGACGGGCTACAAG 60.741 60.000 0.00 0.00 44.05 3.16
6493 7564 8.717821 CAATAGAAGACGTCAACCTATTCAAAA 58.282 33.333 22.72 8.57 30.27 2.44
6505 7577 9.171877 TCAACCTATTCAAAATTTGCTGTTTTT 57.828 25.926 0.00 0.00 0.00 1.94
6534 7606 2.508526 CCTCCCCTGTTTGTTTCAGAG 58.491 52.381 0.00 0.00 35.20 3.35
6543 7615 4.755411 TGTTTGTTTCAGAGTCGAGAAGT 58.245 39.130 0.00 0.00 0.00 3.01
6557 7629 0.251077 AGAAGTTGCCCAGCTTCCAG 60.251 55.000 17.55 0.00 45.88 3.86
6594 7666 0.606401 ACACCAAATCGAGCAGTGGG 60.606 55.000 11.01 1.00 35.32 4.61
6738 7810 1.674221 CGGTCTCAGAGCTGAAAAGGG 60.674 57.143 1.64 0.00 39.39 3.95
6766 7838 1.811679 GCTCACTGAAGTAGCCGCC 60.812 63.158 0.00 0.00 0.00 6.13
6793 7865 3.787001 GCTGGCTCGCCCCTAAGT 61.787 66.667 5.33 0.00 34.56 2.24
6837 7911 3.306088 CGGTGACTTGAGGAGTAATGTGT 60.306 47.826 0.00 0.00 39.19 3.72
6838 7912 3.997021 GGTGACTTGAGGAGTAATGTGTG 59.003 47.826 0.00 0.00 39.19 3.82
6851 7925 5.118990 AGTAATGTGTGGTCATACTGATGC 58.881 41.667 0.01 0.00 32.62 3.91
6852 7926 2.008752 TGTGTGGTCATACTGATGCG 57.991 50.000 0.01 0.00 32.62 4.73
6857 7931 2.100916 GTGGTCATACTGATGCGGTAGT 59.899 50.000 0.00 0.00 32.62 2.73
6874 7948 2.239681 AGTGAGGAGTTAGGAGGGTG 57.760 55.000 0.00 0.00 0.00 4.61
6886 7960 1.357079 AGGAGGGTGTTACGTAGGAGT 59.643 52.381 0.00 0.00 0.00 3.85
6951 8026 0.110823 GGAACGTGTTGTGTCGATGC 60.111 55.000 0.00 0.00 0.00 3.91
6953 8028 1.503818 AACGTGTTGTGTCGATGCCC 61.504 55.000 0.00 0.00 0.00 5.36
6957 8032 1.336755 GTGTTGTGTCGATGCCCTTTT 59.663 47.619 0.00 0.00 0.00 2.27
6961 8036 0.387239 GTGTCGATGCCCTTTTGCAC 60.387 55.000 0.00 0.00 45.48 4.57
6993 8068 2.708216 TGTGCTTTGGAACTGAGACA 57.292 45.000 0.00 0.00 0.00 3.41
7007 8082 2.603776 GACAGTGTCCGGGACCCT 60.604 66.667 23.81 15.62 0.00 4.34
7020 8095 4.643387 ACCCTGTGCACCGCCTTC 62.643 66.667 15.69 0.00 0.00 3.46
7123 8198 2.936993 GCTAGTGTGAGTGTTGGATGGG 60.937 54.545 0.00 0.00 0.00 4.00
7132 8207 4.041762 TTGGATGGGCGGGGTGTC 62.042 66.667 0.00 0.00 0.00 3.67
7146 8221 1.324005 GGTGTCGAGGGAGGAAGAGG 61.324 65.000 0.00 0.00 0.00 3.69
7160 8240 3.726144 GAGGCCTTCCCAGCTGCT 61.726 66.667 6.77 0.00 35.39 4.24
7174 8254 2.281970 TGCTGCTGCTCCCTGTTG 60.282 61.111 17.00 0.00 40.48 3.33
7177 8257 1.954528 CTGCTGCTCCCTGTTGTTG 59.045 57.895 0.00 0.00 0.00 3.33
7179 8259 2.949106 CTGCTCCCTGTTGTTGCG 59.051 61.111 0.00 0.00 0.00 4.85
7201 8281 4.506288 CGTTGTAATCACACTGACTTGACA 59.494 41.667 0.00 0.00 33.30 3.58
7203 8283 6.422223 GTTGTAATCACACTGACTTGACAAG 58.578 40.000 13.77 13.77 33.30 3.16
7209 8289 4.635765 TCACACTGACTTGACAAGAAAAGG 59.364 41.667 21.95 10.08 0.00 3.11
7212 8292 4.635765 CACTGACTTGACAAGAAAAGGTGA 59.364 41.667 21.95 0.00 0.00 4.02
7228 8308 0.895100 GTGATGGGCTTCCAACTGCA 60.895 55.000 0.00 0.00 44.86 4.41
7235 8315 1.571460 CTTCCAACTGCACGTCAGC 59.429 57.895 12.90 3.21 46.76 4.26
7285 8365 3.128242 CACGTCGTACTTGATACTCCCTT 59.872 47.826 0.00 0.00 0.00 3.95
7287 8367 3.545624 CGTCGTACTTGATACTCCCTTCG 60.546 52.174 0.00 0.00 0.00 3.79
7289 8369 3.624861 TCGTACTTGATACTCCCTTCGTC 59.375 47.826 0.00 0.00 0.00 4.20
7290 8370 3.243002 CGTACTTGATACTCCCTTCGTCC 60.243 52.174 0.00 0.00 0.00 4.79
7291 8371 1.749634 ACTTGATACTCCCTTCGTCCG 59.250 52.381 0.00 0.00 0.00 4.79
7292 8372 1.067212 CTTGATACTCCCTTCGTCCGG 59.933 57.143 0.00 0.00 0.00 5.14
7293 8373 0.033796 TGATACTCCCTTCGTCCGGT 60.034 55.000 0.00 0.00 0.00 5.28
7295 8375 2.158564 TGATACTCCCTTCGTCCGGTAT 60.159 50.000 0.00 0.00 0.00 2.73
7298 8378 2.027385 ACTCCCTTCGTCCGGTATTAC 58.973 52.381 0.00 0.00 0.00 1.89
7299 8379 2.305009 CTCCCTTCGTCCGGTATTACT 58.695 52.381 0.00 0.00 0.00 2.24
7302 8382 2.167075 CCCTTCGTCCGGTATTACTTGT 59.833 50.000 0.00 0.00 0.00 3.16
7303 8383 3.184541 CCTTCGTCCGGTATTACTTGTG 58.815 50.000 0.00 0.00 0.00 3.33
7304 8384 2.945447 TCGTCCGGTATTACTTGTGG 57.055 50.000 0.00 0.00 0.00 4.17
7305 8385 1.477700 TCGTCCGGTATTACTTGTGGG 59.522 52.381 0.00 0.00 0.00 4.61
7307 8387 2.480759 CGTCCGGTATTACTTGTGGGAG 60.481 54.545 0.00 0.00 0.00 4.30
7308 8388 2.762327 GTCCGGTATTACTTGTGGGAGA 59.238 50.000 0.00 0.00 0.00 3.71
7309 8389 3.196254 GTCCGGTATTACTTGTGGGAGAA 59.804 47.826 0.00 0.00 0.00 2.87
7310 8390 3.839490 TCCGGTATTACTTGTGGGAGAAA 59.161 43.478 0.00 0.00 0.00 2.52
7312 8392 4.574828 CCGGTATTACTTGTGGGAGAAATG 59.425 45.833 0.00 0.00 0.00 2.32
7313 8393 4.574828 CGGTATTACTTGTGGGAGAAATGG 59.425 45.833 0.00 0.00 0.00 3.16
7315 8395 6.365520 GGTATTACTTGTGGGAGAAATGGAT 58.634 40.000 0.00 0.00 0.00 3.41
7316 8396 6.263168 GGTATTACTTGTGGGAGAAATGGATG 59.737 42.308 0.00 0.00 0.00 3.51
7317 8397 2.450476 ACTTGTGGGAGAAATGGATGC 58.550 47.619 0.00 0.00 0.00 3.91
7318 8398 2.225091 ACTTGTGGGAGAAATGGATGCA 60.225 45.455 0.00 0.00 0.00 3.96
7319 8399 2.832643 TGTGGGAGAAATGGATGCAT 57.167 45.000 0.00 0.00 0.00 3.96
7320 8400 2.658285 TGTGGGAGAAATGGATGCATC 58.342 47.619 18.81 18.81 0.00 3.91
7323 8403 4.070716 GTGGGAGAAATGGATGCATCTAG 58.929 47.826 25.28 0.00 0.00 2.43
7326 8406 5.074102 TGGGAGAAATGGATGCATCTAGAAT 59.926 40.000 25.28 10.31 0.00 2.40
7327 8407 5.647225 GGGAGAAATGGATGCATCTAGAATC 59.353 44.000 25.28 17.61 0.00 2.52
7329 8409 7.310921 GGGAGAAATGGATGCATCTAGAATCTA 60.311 40.741 25.28 0.00 32.33 1.98
7331 8411 8.433249 AGAAATGGATGCATCTAGAATCTAGA 57.567 34.615 25.28 20.85 32.33 2.43
7334 8414 8.891985 AATGGATGCATCTAGAATCTAGAGTA 57.108 34.615 25.28 14.93 32.33 2.59
7335 8415 7.936496 TGGATGCATCTAGAATCTAGAGTAG 57.064 40.000 25.28 16.11 32.33 2.57
7336 8416 7.694093 TGGATGCATCTAGAATCTAGAGTAGA 58.306 38.462 25.28 9.15 39.50 2.59
7338 8418 7.609918 GGATGCATCTAGAATCTAGAGTAGACA 59.390 40.741 25.28 15.85 37.69 3.41
7339 8419 9.177608 GATGCATCTAGAATCTAGAGTAGACAT 57.822 37.037 22.57 18.88 37.69 3.06
7354 8434 5.178797 AGTAGACATATCCATTTATGCGGC 58.821 41.667 0.00 0.00 33.67 6.53
7356 8436 4.397420 AGACATATCCATTTATGCGGCAA 58.603 39.130 6.82 0.00 33.67 4.52
7357 8437 4.456911 AGACATATCCATTTATGCGGCAAG 59.543 41.667 6.82 0.00 33.67 4.01
7358 8438 4.144297 ACATATCCATTTATGCGGCAAGT 58.856 39.130 6.82 0.00 33.67 3.16
7359 8439 5.312895 ACATATCCATTTATGCGGCAAGTA 58.687 37.500 6.82 0.00 33.67 2.24
7360 8440 5.767665 ACATATCCATTTATGCGGCAAGTAA 59.232 36.000 6.82 0.00 33.67 2.24
7363 8443 5.181690 TCCATTTATGCGGCAAGTAATTC 57.818 39.130 6.82 0.00 0.00 2.17
7364 8444 4.037446 TCCATTTATGCGGCAAGTAATTCC 59.963 41.667 6.82 0.00 0.00 3.01
7365 8445 3.684103 TTTATGCGGCAAGTAATTCCG 57.316 42.857 6.82 8.71 45.46 4.30
7366 8446 2.605837 TATGCGGCAAGTAATTCCGA 57.394 45.000 6.82 4.26 45.53 4.55
7367 8447 1.745232 ATGCGGCAAGTAATTCCGAA 58.255 45.000 6.82 7.27 45.53 4.30
7368 8448 1.524848 TGCGGCAAGTAATTCCGAAA 58.475 45.000 14.89 3.12 45.53 3.46
7369 8449 1.880675 TGCGGCAAGTAATTCCGAAAA 59.119 42.857 14.89 1.23 45.53 2.29
7370 8450 2.095466 TGCGGCAAGTAATTCCGAAAAG 60.095 45.455 14.89 0.00 45.53 2.27
7371 8451 2.515912 CGGCAAGTAATTCCGAAAAGC 58.484 47.619 7.68 0.00 45.53 3.51
7372 8452 2.161609 CGGCAAGTAATTCCGAAAAGCT 59.838 45.455 7.68 0.00 45.53 3.74
7373 8453 3.365969 CGGCAAGTAATTCCGAAAAGCTT 60.366 43.478 7.68 0.00 45.53 3.74
7374 8454 3.920412 GGCAAGTAATTCCGAAAAGCTTG 59.080 43.478 0.00 13.24 36.08 4.01
7375 8455 3.920412 GCAAGTAATTCCGAAAAGCTTGG 59.080 43.478 0.00 0.00 34.28 3.61
7376 8456 4.485163 CAAGTAATTCCGAAAAGCTTGGG 58.515 43.478 0.00 2.03 0.00 4.12
7377 8457 2.492088 AGTAATTCCGAAAAGCTTGGGC 59.508 45.455 0.00 0.00 39.06 5.36
7378 8458 1.337118 AATTCCGAAAAGCTTGGGCA 58.663 45.000 0.00 0.00 41.70 5.36
7379 8459 1.560505 ATTCCGAAAAGCTTGGGCAT 58.439 45.000 0.00 0.00 41.70 4.40
7380 8460 0.602562 TTCCGAAAAGCTTGGGCATG 59.397 50.000 0.00 0.00 41.70 4.06
7381 8461 0.251121 TCCGAAAAGCTTGGGCATGA 60.251 50.000 0.00 0.00 41.70 3.07
7382 8462 0.171903 CCGAAAAGCTTGGGCATGAG 59.828 55.000 0.00 0.00 41.70 2.90
7383 8463 0.457337 CGAAAAGCTTGGGCATGAGC 60.457 55.000 0.00 0.00 41.70 4.26
7387 8467 3.416253 AGCTTGGGCATGAGCTATG 57.584 52.632 4.90 0.00 46.78 2.23
7395 8475 2.328235 CATGAGCTATGCACCCTGC 58.672 57.895 0.00 0.00 45.29 4.85
7404 8484 4.719106 GCACCCTGCAGCTGCTCT 62.719 66.667 36.61 15.22 44.26 4.09
7405 8485 2.984623 CACCCTGCAGCTGCTCTA 59.015 61.111 36.61 18.17 42.66 2.43
7406 8486 1.525923 CACCCTGCAGCTGCTCTAT 59.474 57.895 36.61 18.74 42.66 1.98
7407 8487 0.107312 CACCCTGCAGCTGCTCTATT 60.107 55.000 36.61 16.24 42.66 1.73
7408 8488 0.622665 ACCCTGCAGCTGCTCTATTT 59.377 50.000 36.61 15.18 42.66 1.40
7409 8489 1.005215 ACCCTGCAGCTGCTCTATTTT 59.995 47.619 36.61 13.63 42.66 1.82
7410 8490 2.239654 ACCCTGCAGCTGCTCTATTTTA 59.760 45.455 36.61 15.14 42.66 1.52
7411 8491 2.877168 CCCTGCAGCTGCTCTATTTTAG 59.123 50.000 36.61 23.03 42.66 1.85
7412 8492 2.877168 CCTGCAGCTGCTCTATTTTAGG 59.123 50.000 36.61 27.39 42.66 2.69
7413 8493 2.877168 CTGCAGCTGCTCTATTTTAGGG 59.123 50.000 36.61 10.15 42.66 3.53
7430 8510 3.505835 GGCACCCCATAATTCCGAA 57.494 52.632 0.00 0.00 0.00 4.30
7431 8511 1.770294 GGCACCCCATAATTCCGAAA 58.230 50.000 0.00 0.00 0.00 3.46
7432 8512 2.104170 GGCACCCCATAATTCCGAAAA 58.896 47.619 0.00 0.00 0.00 2.29
7433 8513 2.100749 GGCACCCCATAATTCCGAAAAG 59.899 50.000 0.00 0.00 0.00 2.27
7434 8514 2.481276 GCACCCCATAATTCCGAAAAGC 60.481 50.000 0.00 0.00 0.00 3.51
7435 8515 3.023832 CACCCCATAATTCCGAAAAGCT 58.976 45.455 0.00 0.00 0.00 3.74
7436 8516 3.447229 CACCCCATAATTCCGAAAAGCTT 59.553 43.478 0.00 0.00 0.00 3.74
7437 8517 3.447229 ACCCCATAATTCCGAAAAGCTTG 59.553 43.478 0.00 0.00 0.00 4.01
7438 8518 3.447742 CCCATAATTCCGAAAAGCTTGC 58.552 45.455 0.00 0.00 0.00 4.01
7439 8519 3.108144 CCATAATTCCGAAAAGCTTGCG 58.892 45.455 13.33 13.33 0.00 4.85
7440 8520 2.256445 TAATTCCGAAAAGCTTGCGC 57.744 45.000 14.50 0.00 0.00 6.09
7441 8521 0.729140 AATTCCGAAAAGCTTGCGCG 60.729 50.000 14.50 0.00 42.32 6.86
7442 8522 1.573829 ATTCCGAAAAGCTTGCGCGA 61.574 50.000 12.10 0.00 42.32 5.87
7443 8523 2.170260 TTCCGAAAAGCTTGCGCGAG 62.170 55.000 20.86 20.86 42.32 5.03
7468 8548 4.798344 CCCTGCAGCTGCTCCCTG 62.798 72.222 36.61 20.83 42.66 4.45
7469 8549 4.031129 CCTGCAGCTGCTCCCTGT 62.031 66.667 36.61 0.00 42.66 4.00
7470 8550 2.033757 CTGCAGCTGCTCCCTGTT 59.966 61.111 36.61 0.00 42.66 3.16
7471 8551 2.281970 TGCAGCTGCTCCCTGTTG 60.282 61.111 36.61 0.00 42.66 3.33
7472 8552 2.282040 GCAGCTGCTCCCTGTTGT 60.282 61.111 31.33 0.00 38.21 3.32
7473 8553 1.900498 GCAGCTGCTCCCTGTTGTT 60.900 57.895 31.33 0.00 38.21 2.83
7474 8554 1.954528 CAGCTGCTCCCTGTTGTTG 59.045 57.895 0.00 0.00 0.00 3.33
7475 8555 1.900498 AGCTGCTCCCTGTTGTTGC 60.900 57.895 0.00 0.00 0.00 4.17
7476 8556 2.195567 GCTGCTCCCTGTTGTTGCA 61.196 57.895 0.00 0.00 0.00 4.08
7477 8557 1.530013 GCTGCTCCCTGTTGTTGCAT 61.530 55.000 0.00 0.00 33.02 3.96
7478 8558 0.963962 CTGCTCCCTGTTGTTGCATT 59.036 50.000 0.00 0.00 33.02 3.56
7479 8559 0.675083 TGCTCCCTGTTGTTGCATTG 59.325 50.000 0.00 0.00 0.00 2.82
7480 8560 0.675633 GCTCCCTGTTGTTGCATTGT 59.324 50.000 0.00 0.00 0.00 2.71
7481 8561 1.885887 GCTCCCTGTTGTTGCATTGTA 59.114 47.619 0.00 0.00 0.00 2.41
7482 8562 2.295909 GCTCCCTGTTGTTGCATTGTAA 59.704 45.455 0.00 0.00 0.00 2.41
7483 8563 3.056607 GCTCCCTGTTGTTGCATTGTAAT 60.057 43.478 0.00 0.00 0.00 1.89
7484 8564 4.737054 CTCCCTGTTGTTGCATTGTAATC 58.263 43.478 0.00 0.00 0.00 1.75
7485 8565 4.148079 TCCCTGTTGTTGCATTGTAATCA 58.852 39.130 0.00 0.00 0.00 2.57
7486 8566 4.022416 TCCCTGTTGTTGCATTGTAATCAC 60.022 41.667 0.00 0.00 0.00 3.06
7487 8567 4.261952 CCCTGTTGTTGCATTGTAATCACA 60.262 41.667 0.00 0.00 0.00 3.58
7488 8568 4.681025 CCTGTTGTTGCATTGTAATCACAC 59.319 41.667 0.00 0.00 33.30 3.82
7489 8569 5.507817 CCTGTTGTTGCATTGTAATCACACT 60.508 40.000 0.00 0.00 33.30 3.55
7490 8570 5.280164 TGTTGTTGCATTGTAATCACACTG 58.720 37.500 0.00 0.00 38.13 3.66
7491 8571 5.067023 TGTTGTTGCATTGTAATCACACTGA 59.933 36.000 0.00 0.00 37.48 3.41
7492 8572 5.107109 TGTTGCATTGTAATCACACTGAC 57.893 39.130 0.00 0.00 37.48 3.51
7493 8573 4.821260 TGTTGCATTGTAATCACACTGACT 59.179 37.500 0.00 0.00 37.48 3.41
7494 8574 5.299028 TGTTGCATTGTAATCACACTGACTT 59.701 36.000 0.00 0.00 37.48 3.01
7495 8575 5.361135 TGCATTGTAATCACACTGACTTG 57.639 39.130 0.00 0.00 37.48 3.16
7496 8576 5.062528 TGCATTGTAATCACACTGACTTGA 58.937 37.500 0.00 0.00 37.48 3.02
7497 8577 5.049474 TGCATTGTAATCACACTGACTTGAC 60.049 40.000 0.00 0.00 37.48 3.18
7498 8578 5.049474 GCATTGTAATCACACTGACTTGACA 60.049 40.000 0.00 0.00 37.48 3.58
7499 8579 6.513230 GCATTGTAATCACACTGACTTGACAA 60.513 38.462 0.00 0.00 37.48 3.18
7500 8580 6.993786 TTGTAATCACACTGACTTGACAAA 57.006 33.333 0.00 0.00 33.30 2.83
7501 8581 6.993786 TGTAATCACACTGACTTGACAAAA 57.006 33.333 0.00 0.00 0.00 2.44
7502 8582 7.384439 TGTAATCACACTGACTTGACAAAAA 57.616 32.000 0.00 0.00 0.00 1.94
7503 8583 7.471721 TGTAATCACACTGACTTGACAAAAAG 58.528 34.615 0.00 0.00 0.00 2.27
7504 8584 6.757897 AATCACACTGACTTGACAAAAAGA 57.242 33.333 0.00 0.00 0.00 2.52
7505 8585 5.801350 TCACACTGACTTGACAAAAAGAG 57.199 39.130 0.00 0.00 0.00 2.85
7506 8586 5.487433 TCACACTGACTTGACAAAAAGAGA 58.513 37.500 0.00 0.00 0.00 3.10
7507 8587 6.115446 TCACACTGACTTGACAAAAAGAGAT 58.885 36.000 0.00 0.00 0.00 2.75
7508 8588 6.037500 TCACACTGACTTGACAAAAAGAGATG 59.962 38.462 0.00 0.00 0.00 2.90
7509 8589 5.210715 CACTGACTTGACAAAAAGAGATGC 58.789 41.667 0.00 0.00 0.00 3.91
7510 8590 5.008415 CACTGACTTGACAAAAAGAGATGCT 59.992 40.000 0.00 0.00 0.00 3.79
7511 8591 5.008415 ACTGACTTGACAAAAAGAGATGCTG 59.992 40.000 0.00 0.00 0.00 4.41
7512 8592 4.276678 TGACTTGACAAAAAGAGATGCTGG 59.723 41.667 0.00 0.00 0.00 4.85
7513 8593 3.571401 ACTTGACAAAAAGAGATGCTGGG 59.429 43.478 0.00 0.00 0.00 4.45
7514 8594 1.888512 TGACAAAAAGAGATGCTGGGC 59.111 47.619 0.00 0.00 0.00 5.36
7515 8595 2.165998 GACAAAAAGAGATGCTGGGCT 58.834 47.619 0.00 0.00 0.00 5.19
7516 8596 2.560105 GACAAAAAGAGATGCTGGGCTT 59.440 45.455 0.00 0.00 0.00 4.35
7517 8597 2.560105 ACAAAAAGAGATGCTGGGCTTC 59.440 45.455 0.00 0.00 33.70 3.86
7518 8598 1.844687 AAAAGAGATGCTGGGCTTCC 58.155 50.000 2.54 0.00 33.95 3.46
7519 8599 0.700564 AAAGAGATGCTGGGCTTCCA 59.299 50.000 2.54 0.00 39.08 3.53
7520 8600 0.700564 AAGAGATGCTGGGCTTCCAA 59.299 50.000 2.54 0.00 40.58 3.53
7521 8601 0.034670 AGAGATGCTGGGCTTCCAAC 60.035 55.000 2.54 0.00 40.58 3.77
7522 8602 0.034670 GAGATGCTGGGCTTCCAACT 60.035 55.000 2.54 0.00 40.58 3.16
7523 8603 0.323178 AGATGCTGGGCTTCCAACTG 60.323 55.000 2.54 0.00 40.58 3.16
7524 8604 1.941999 GATGCTGGGCTTCCAACTGC 61.942 60.000 0.00 0.00 40.58 4.40
7525 8605 2.598394 GCTGGGCTTCCAACTGCA 60.598 61.111 0.00 0.00 40.58 4.41
7526 8606 2.924105 GCTGGGCTTCCAACTGCAC 61.924 63.158 0.00 0.00 40.58 4.57
7527 8607 2.594303 TGGGCTTCCAACTGCACG 60.594 61.111 0.00 0.00 37.67 5.34
7528 8608 4.043200 GGGCTTCCAACTGCACGC 62.043 66.667 0.00 0.00 0.00 5.34
7529 8609 4.043200 GGCTTCCAACTGCACGCC 62.043 66.667 0.00 0.00 0.00 5.68
7530 8610 3.286751 GCTTCCAACTGCACGCCA 61.287 61.111 0.00 0.00 0.00 5.69
7532 8612 2.594303 TTCCAACTGCACGCCAGG 60.594 61.111 8.34 0.00 46.14 4.45
7533 8613 4.641645 TCCAACTGCACGCCAGGG 62.642 66.667 8.34 1.73 46.14 4.45
7534 8614 4.954970 CCAACTGCACGCCAGGGT 62.955 66.667 8.34 0.00 46.14 4.34
7535 8615 2.906897 CAACTGCACGCCAGGGTT 60.907 61.111 8.34 0.00 46.14 4.11
7536 8616 1.599518 CAACTGCACGCCAGGGTTA 60.600 57.895 8.34 0.00 46.14 2.85
7537 8617 1.149627 AACTGCACGCCAGGGTTAA 59.850 52.632 8.34 0.00 46.14 2.01
7538 8618 1.170290 AACTGCACGCCAGGGTTAAC 61.170 55.000 8.34 0.00 46.14 2.01
7539 8619 2.666862 TGCACGCCAGGGTTAACG 60.667 61.111 0.00 0.00 0.00 3.18
7540 8620 4.097863 GCACGCCAGGGTTAACGC 62.098 66.667 14.45 14.45 0.00 4.84
7541 8621 2.666862 CACGCCAGGGTTAACGCA 60.667 61.111 22.93 0.00 0.00 5.24
7542 8622 2.111460 ACGCCAGGGTTAACGCAA 59.889 55.556 22.93 0.00 0.00 4.85
7544 8624 2.566529 GCCAGGGTTAACGCAAGC 59.433 61.111 22.93 19.76 45.62 4.01
7545 8625 1.971695 GCCAGGGTTAACGCAAGCT 60.972 57.895 22.93 1.04 45.62 3.74
7546 8626 1.923227 GCCAGGGTTAACGCAAGCTC 61.923 60.000 22.93 5.33 45.62 4.09
7547 8627 0.321653 CCAGGGTTAACGCAAGCTCT 60.322 55.000 22.93 0.00 45.62 4.09
7548 8628 1.523758 CAGGGTTAACGCAAGCTCTT 58.476 50.000 22.93 0.00 45.62 2.85
7549 8629 2.614481 CCAGGGTTAACGCAAGCTCTTA 60.614 50.000 22.93 0.00 45.62 2.10
7550 8630 2.673368 CAGGGTTAACGCAAGCTCTTAG 59.327 50.000 22.93 0.09 45.62 2.18
7551 8631 1.397343 GGGTTAACGCAAGCTCTTAGC 59.603 52.381 17.07 0.00 42.84 3.09
7561 8641 2.761071 GCTCTTAGCTCTGTGTGGC 58.239 57.895 0.00 0.00 38.45 5.01
7562 8642 0.036952 GCTCTTAGCTCTGTGTGGCA 60.037 55.000 0.00 0.00 38.45 4.92
7563 8643 1.719600 CTCTTAGCTCTGTGTGGCAC 58.280 55.000 11.55 11.55 34.56 5.01
7564 8644 0.038251 TCTTAGCTCTGTGTGGCACG 60.038 55.000 13.77 0.00 37.14 5.34
7565 8645 0.319900 CTTAGCTCTGTGTGGCACGT 60.320 55.000 13.77 0.00 37.14 4.49
7566 8646 0.319555 TTAGCTCTGTGTGGCACGTC 60.320 55.000 13.77 9.29 37.14 4.34
7567 8647 2.472232 TAGCTCTGTGTGGCACGTCG 62.472 60.000 13.77 3.34 37.14 5.12
7568 8648 2.027605 CTCTGTGTGGCACGTCGT 59.972 61.111 13.77 0.00 37.14 4.34
7569 8649 1.284715 CTCTGTGTGGCACGTCGTA 59.715 57.895 13.77 0.00 37.14 3.43
7570 8650 1.002250 CTCTGTGTGGCACGTCGTAC 61.002 60.000 13.77 5.61 37.14 3.67
7571 8651 2.019951 CTGTGTGGCACGTCGTACC 61.020 63.158 13.77 7.75 37.14 3.34
7572 8652 2.337532 GTGTGGCACGTCGTACCT 59.662 61.111 15.56 0.00 0.00 3.08
7573 8653 2.019951 GTGTGGCACGTCGTACCTG 61.020 63.158 15.56 0.00 0.00 4.00
7593 8673 4.518211 CCTGATAGGGCATGAATCTTGTTC 59.482 45.833 0.00 0.00 0.00 3.18
7594 8674 5.374921 CTGATAGGGCATGAATCTTGTTCT 58.625 41.667 0.00 0.00 0.00 3.01
7595 8675 5.759059 TGATAGGGCATGAATCTTGTTCTT 58.241 37.500 0.00 0.00 0.00 2.52
7630 8710 2.159338 CCACGCAATTCTGGAATGGAAG 60.159 50.000 2.19 0.00 0.00 3.46
7640 8720 1.379642 GGAATGGAAGAGCTTGGGCG 61.380 60.000 0.00 0.00 44.37 6.13
7663 8743 2.237392 GAGCGATGCCCCCTATTCTTAT 59.763 50.000 0.00 0.00 0.00 1.73
7673 8753 4.100189 CCCCCTATTCTTATAGCATCTCCG 59.900 50.000 0.00 0.00 33.73 4.63
7687 8767 0.687757 TCTCCGATAGCTGCCCTGTT 60.688 55.000 0.00 0.00 0.00 3.16
7724 8804 3.520317 TGGGCTCGGAGTAAAATTTAGGA 59.480 43.478 6.90 0.00 0.00 2.94
7732 8812 6.771749 TCGGAGTAAAATTTAGGACACCAAAA 59.228 34.615 11.90 0.00 0.00 2.44
7736 8816 9.244799 GAGTAAAATTTAGGACACCAAAAAGTG 57.755 33.333 0.00 0.00 43.65 3.16
7737 8817 6.918892 AAAATTTAGGACACCAAAAAGTGC 57.081 33.333 0.00 0.00 41.67 4.40
7738 8818 5.869649 AATTTAGGACACCAAAAAGTGCT 57.130 34.783 0.00 0.00 41.67 4.40
7739 8819 5.869649 ATTTAGGACACCAAAAAGTGCTT 57.130 34.783 0.00 0.00 41.67 3.91
7740 8820 5.669164 TTTAGGACACCAAAAAGTGCTTT 57.331 34.783 0.00 0.00 41.67 3.51
7741 8821 5.669164 TTAGGACACCAAAAAGTGCTTTT 57.331 34.783 4.26 4.26 43.88 2.27
7758 8838 3.542825 TTTTTGGCACGAGAAAGCG 57.457 47.368 0.00 0.00 37.29 4.68
7759 8839 0.736053 TTTTTGGCACGAGAAAGCGT 59.264 45.000 0.00 0.00 46.88 5.07
7760 8840 0.736053 TTTTGGCACGAGAAAGCGTT 59.264 45.000 0.00 0.00 43.59 4.84
7761 8841 0.028770 TTTGGCACGAGAAAGCGTTG 59.971 50.000 0.00 0.00 43.59 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 0.252197 CTAGGGTTTTGGAGGGACGG 59.748 60.000 0.00 0.00 0.00 4.79
17 18 0.034380 GGCTAGGGTTTTGGAGGGAC 60.034 60.000 0.00 0.00 0.00 4.46
18 19 1.559065 CGGCTAGGGTTTTGGAGGGA 61.559 60.000 0.00 0.00 0.00 4.20
19 20 1.077716 CGGCTAGGGTTTTGGAGGG 60.078 63.158 0.00 0.00 0.00 4.30
20 21 1.077716 CCGGCTAGGGTTTTGGAGG 60.078 63.158 0.00 0.00 35.97 4.30
21 22 4.637771 CCGGCTAGGGTTTTGGAG 57.362 61.111 0.00 0.00 35.97 3.86
104 126 0.870307 CTTACCGAGGAATGGCGACG 60.870 60.000 0.00 0.00 0.00 5.12
189 211 2.012902 GAGCCGAGCCTAACCGCTTA 62.013 60.000 0.00 0.00 39.87 3.09
190 212 3.372554 GAGCCGAGCCTAACCGCTT 62.373 63.158 0.00 0.00 39.87 4.68
254 276 1.202087 GCCACAAAATACGCACGCATA 60.202 47.619 0.00 0.00 0.00 3.14
265 287 1.135915 TGTTTGAGCACGCCACAAAAT 59.864 42.857 11.58 0.00 35.74 1.82
305 327 3.396611 ACCACCACCACACCTAATTAACT 59.603 43.478 0.00 0.00 0.00 2.24
326 350 2.450609 TCAGGAACCGAGCTTAACAC 57.549 50.000 0.00 0.00 0.00 3.32
327 351 3.695830 AATCAGGAACCGAGCTTAACA 57.304 42.857 0.00 0.00 0.00 2.41
328 352 4.379499 CCAAAATCAGGAACCGAGCTTAAC 60.379 45.833 0.00 0.00 0.00 2.01
346 370 0.251165 GGCAGCACTCCTACCCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
356 380 1.532868 CACAACAGTAAGGCAGCACTC 59.467 52.381 0.00 0.00 0.00 3.51
360 387 1.318576 AACCACAACAGTAAGGCAGC 58.681 50.000 0.00 0.00 0.00 5.25
376 403 2.758423 AGCCGAATACCATCCAAAAACC 59.242 45.455 0.00 0.00 0.00 3.27
381 408 1.408127 CCACAGCCGAATACCATCCAA 60.408 52.381 0.00 0.00 0.00 3.53
388 415 3.089784 CACGCCACAGCCGAATAC 58.910 61.111 0.00 0.00 34.57 1.89
389 416 2.817834 GCACGCCACAGCCGAATA 60.818 61.111 0.00 0.00 34.57 1.75
395 422 4.980903 CCAAACGCACGCCACAGC 62.981 66.667 0.00 0.00 0.00 4.40
401 428 1.117234 CAGTAAAACCAAACGCACGC 58.883 50.000 0.00 0.00 0.00 5.34
438 465 2.162681 CCACCACCAAGAATCTTCCAC 58.837 52.381 0.00 0.00 0.00 4.02
550 577 9.430838 CTAAATTAAATCAGAGCATTCGAACAG 57.569 33.333 0.00 0.00 0.00 3.16
551 578 8.946085 ACTAAATTAAATCAGAGCATTCGAACA 58.054 29.630 0.00 0.00 0.00 3.18
5382 6402 2.238646 TGAGGAAATCCAACGTGGCTAT 59.761 45.455 1.67 0.00 37.47 2.97
5383 6403 1.626321 TGAGGAAATCCAACGTGGCTA 59.374 47.619 1.67 0.00 37.47 3.93
5384 6404 0.400213 TGAGGAAATCCAACGTGGCT 59.600 50.000 1.67 0.00 37.47 4.75
5385 6405 0.804989 CTGAGGAAATCCAACGTGGC 59.195 55.000 1.67 0.00 37.47 5.01
5445 6465 1.539827 ACTTCATAACTGGCAAACCGC 59.460 47.619 0.00 0.00 39.70 5.68
5461 6481 2.076863 CCCACCTCGTCATCAAACTTC 58.923 52.381 0.00 0.00 0.00 3.01
5491 6511 3.811083 TGTTGACCTTTTCCGCTTCTTA 58.189 40.909 0.00 0.00 0.00 2.10
5585 6605 9.541143 TTTTGTGAAGGACAATTTTCTAATTCC 57.459 29.630 0.00 0.00 44.23 3.01
5662 6683 4.676196 GCCTCTTGAACATGTATGCCAAAG 60.676 45.833 0.00 0.00 0.00 2.77
5737 6758 3.620374 CCTTCTCAGTCAATGTGGAATCG 59.380 47.826 0.00 0.00 0.00 3.34
5741 6762 3.136443 ACAACCTTCTCAGTCAATGTGGA 59.864 43.478 0.00 0.00 0.00 4.02
5824 6845 2.288763 TGCACGATAAGCTTGTCAGTCA 60.289 45.455 21.29 12.46 0.00 3.41
5871 6892 2.289195 ACGAAGGTGCTATTTTCCGTCA 60.289 45.455 0.00 0.00 31.87 4.35
5904 6925 5.776744 TGGTCGTTAAAGTAAGTCTTCTCC 58.223 41.667 0.00 0.00 35.02 3.71
6040 7061 3.884037 AAAGGTTGAACTGGGTCAGAT 57.116 42.857 1.59 0.00 35.18 2.90
6056 7077 1.733402 TTGGTGTCGCTGGCAAAAGG 61.733 55.000 0.00 0.00 0.00 3.11
6063 7084 2.422597 TGAAGTTATTGGTGTCGCTGG 58.577 47.619 0.00 0.00 0.00 4.85
6076 7097 7.264221 ACATGTTTTCACTTTGCATGAAGTTA 58.736 30.769 0.90 0.00 37.76 2.24
6124 7145 5.930135 AGCTGGTATGTTAAACTGGGATAG 58.070 41.667 0.00 0.00 0.00 2.08
6151 7172 6.773200 GCTCCTAAGGCACTAAAAATTAGGAT 59.227 38.462 11.33 0.00 46.35 3.24
6179 7200 7.810766 TTTTTCCGCTAGATTTTTGCATAAG 57.189 32.000 0.00 0.00 0.00 1.73
6220 7241 5.049612 GGTTATGAAAGGGTTATAGCGCTTC 60.050 44.000 18.68 3.71 40.11 3.86
6344 7394 6.532988 ACCTCAGATAAGAGTTTACAGTCC 57.467 41.667 0.00 0.00 33.75 3.85
6345 7395 7.757624 CAGAACCTCAGATAAGAGTTTACAGTC 59.242 40.741 0.00 0.00 33.75 3.51
6346 7396 7.310113 CCAGAACCTCAGATAAGAGTTTACAGT 60.310 40.741 0.00 0.00 33.75 3.55
6365 7415 1.468914 GCATCGAAGGTTTCCAGAACC 59.531 52.381 0.00 0.00 40.58 3.62
6394 7444 1.918800 AAGGAGCCTTGTAGCCCGT 60.919 57.895 0.00 0.00 34.60 5.28
6475 7525 6.088085 CAGCAAATTTTGAATAGGTTGACGTC 59.912 38.462 13.26 9.11 0.00 4.34
6493 7564 3.337358 GGCAGGCATAAAAACAGCAAAT 58.663 40.909 0.00 0.00 0.00 2.32
6505 7577 2.773918 CAGGGGAGGGCAGGCATA 60.774 66.667 0.00 0.00 0.00 3.14
6534 7606 0.603975 AAGCTGGGCAACTTCTCGAC 60.604 55.000 0.00 0.00 0.00 4.20
6543 7615 0.840288 TAGTCCTGGAAGCTGGGCAA 60.840 55.000 0.00 0.00 0.00 4.52
6594 7666 3.575506 TGAACTGATGGGTCATGGC 57.424 52.632 0.00 0.00 36.62 4.40
6716 7788 1.273606 CTTTTCAGCTCTGAGACCGGA 59.726 52.381 9.46 0.00 41.13 5.14
6776 7848 1.968050 TTACTTAGGGGCGAGCCAGC 61.968 60.000 16.65 0.00 37.98 4.85
6778 7850 0.985760 TTTTACTTAGGGGCGAGCCA 59.014 50.000 16.65 0.00 37.98 4.75
6802 7874 1.901948 TCACCGACCGAGCAACTCT 60.902 57.895 0.00 0.00 0.00 3.24
6810 7882 1.228337 TCCTCAAGTCACCGACCGA 60.228 57.895 0.00 0.00 32.18 4.69
6811 7883 1.213013 CTCCTCAAGTCACCGACCG 59.787 63.158 0.00 0.00 32.18 4.79
6812 7884 1.542492 TACTCCTCAAGTCACCGACC 58.458 55.000 0.00 0.00 39.55 4.79
6813 7885 3.056749 ACATTACTCCTCAAGTCACCGAC 60.057 47.826 0.00 0.00 39.55 4.79
6851 7925 2.299521 CCTCCTAACTCCTCACTACCG 58.700 57.143 0.00 0.00 0.00 4.02
6852 7926 2.024177 ACCCTCCTAACTCCTCACTACC 60.024 54.545 0.00 0.00 0.00 3.18
6857 7931 2.715763 AACACCCTCCTAACTCCTCA 57.284 50.000 0.00 0.00 0.00 3.86
6874 7948 5.915196 ACACGAAGTTAAACTCCTACGTAAC 59.085 40.000 0.00 0.00 41.61 2.50
6906 7980 0.744281 GCACCCCATCCCAAAATACG 59.256 55.000 0.00 0.00 0.00 3.06
6947 8022 0.037975 CCTGTGTGCAAAAGGGCATC 60.038 55.000 0.00 0.00 46.92 3.91
6957 8032 0.467844 ACATTCTTGCCCTGTGTGCA 60.468 50.000 0.00 0.00 36.84 4.57
6961 8036 0.963962 AAGCACATTCTTGCCCTGTG 59.036 50.000 0.00 0.00 44.14 3.66
6970 8045 3.817647 GTCTCAGTTCCAAAGCACATTCT 59.182 43.478 0.00 0.00 0.00 2.40
7007 8082 4.680237 CGGAGAAGGCGGTGCACA 62.680 66.667 20.43 0.00 0.00 4.57
7096 8171 2.802816 CAACACTCACACTAGCTCAACC 59.197 50.000 0.00 0.00 0.00 3.77
7132 8207 1.681486 GAAGGCCTCTTCCTCCCTCG 61.681 65.000 5.23 0.00 42.61 4.63
7160 8240 2.195567 GCAACAACAGGGAGCAGCA 61.196 57.895 0.00 0.00 0.00 4.41
7174 8254 3.247648 AGTCAGTGTGATTACAACGCAAC 59.752 43.478 0.00 0.00 38.82 4.17
7177 8257 3.493129 TCAAGTCAGTGTGATTACAACGC 59.507 43.478 0.00 0.00 38.82 4.84
7179 8259 5.984233 TGTCAAGTCAGTGTGATTACAAC 57.016 39.130 0.00 0.00 38.82 3.32
7201 8281 2.158325 TGGAAGCCCATCACCTTTTCTT 60.158 45.455 0.00 0.00 37.58 2.52
7203 8283 1.923356 TGGAAGCCCATCACCTTTTC 58.077 50.000 0.00 0.00 37.58 2.29
7209 8289 0.895100 TGCAGTTGGAAGCCCATCAC 60.895 55.000 0.00 0.00 43.12 3.06
7212 8292 1.973281 CGTGCAGTTGGAAGCCCAT 60.973 57.895 0.00 0.00 43.12 4.00
7228 8308 1.508632 ACTTGCGTTAATGCTGACGT 58.491 45.000 19.94 9.00 41.10 4.34
7285 8365 1.477700 CCCACAAGTAATACCGGACGA 59.522 52.381 9.46 0.00 0.00 4.20
7287 8367 2.762327 TCTCCCACAAGTAATACCGGAC 59.238 50.000 9.46 0.00 0.00 4.79
7289 8369 3.899052 TTCTCCCACAAGTAATACCGG 57.101 47.619 0.00 0.00 0.00 5.28
7290 8370 4.574828 CCATTTCTCCCACAAGTAATACCG 59.425 45.833 0.00 0.00 0.00 4.02
7291 8371 5.751586 TCCATTTCTCCCACAAGTAATACC 58.248 41.667 0.00 0.00 0.00 2.73
7292 8372 6.238759 GCATCCATTTCTCCCACAAGTAATAC 60.239 42.308 0.00 0.00 0.00 1.89
7293 8373 5.827797 GCATCCATTTCTCCCACAAGTAATA 59.172 40.000 0.00 0.00 0.00 0.98
7295 8375 4.016444 GCATCCATTTCTCCCACAAGTAA 58.984 43.478 0.00 0.00 0.00 2.24
7298 8378 2.449464 TGCATCCATTTCTCCCACAAG 58.551 47.619 0.00 0.00 0.00 3.16
7299 8379 2.601240 TGCATCCATTTCTCCCACAA 57.399 45.000 0.00 0.00 0.00 3.33
7302 8382 3.975982 TCTAGATGCATCCATTTCTCCCA 59.024 43.478 23.06 0.00 0.00 4.37
7303 8383 4.630644 TCTAGATGCATCCATTTCTCCC 57.369 45.455 23.06 0.00 0.00 4.30
7304 8384 6.474630 AGATTCTAGATGCATCCATTTCTCC 58.525 40.000 23.06 6.31 0.00 3.71
7305 8385 8.530311 TCTAGATTCTAGATGCATCCATTTCTC 58.470 37.037 23.06 12.69 0.00 2.87
7307 8387 8.313292 ACTCTAGATTCTAGATGCATCCATTTC 58.687 37.037 23.06 13.31 0.00 2.17
7308 8388 8.204903 ACTCTAGATTCTAGATGCATCCATTT 57.795 34.615 23.06 7.24 0.00 2.32
7309 8389 7.795534 ACTCTAGATTCTAGATGCATCCATT 57.204 36.000 23.06 7.62 0.00 3.16
7310 8390 8.335484 TCTACTCTAGATTCTAGATGCATCCAT 58.665 37.037 23.06 10.19 0.00 3.41
7312 8392 7.609918 TGTCTACTCTAGATTCTAGATGCATCC 59.390 40.741 23.06 6.67 37.13 3.51
7313 8393 8.560355 TGTCTACTCTAGATTCTAGATGCATC 57.440 38.462 20.90 19.37 37.13 3.91
7326 8406 8.678199 CGCATAAATGGATATGTCTACTCTAGA 58.322 37.037 0.00 0.00 36.00 2.43
7327 8407 7.918033 CCGCATAAATGGATATGTCTACTCTAG 59.082 40.741 0.00 0.00 36.00 2.43
7329 8409 6.634805 CCGCATAAATGGATATGTCTACTCT 58.365 40.000 0.00 0.00 36.00 3.24
7331 8411 5.178797 GCCGCATAAATGGATATGTCTACT 58.821 41.667 0.00 0.00 36.00 2.57
7334 8414 4.019792 TGCCGCATAAATGGATATGTCT 57.980 40.909 0.00 0.00 36.00 3.41
7335 8415 4.216257 ACTTGCCGCATAAATGGATATGTC 59.784 41.667 0.00 0.00 36.00 3.06
7336 8416 4.144297 ACTTGCCGCATAAATGGATATGT 58.856 39.130 0.00 0.00 36.00 2.29
7338 8418 7.362920 GGAATTACTTGCCGCATAAATGGATAT 60.363 37.037 0.00 0.00 0.00 1.63
7339 8419 6.072175 GGAATTACTTGCCGCATAAATGGATA 60.072 38.462 0.00 0.00 0.00 2.59
7340 8420 5.278957 GGAATTACTTGCCGCATAAATGGAT 60.279 40.000 0.00 0.00 0.00 3.41
7342 8422 4.298332 GGAATTACTTGCCGCATAAATGG 58.702 43.478 0.00 0.00 0.00 3.16
7343 8423 3.974401 CGGAATTACTTGCCGCATAAATG 59.026 43.478 0.00 0.00 38.46 2.32
7344 8424 3.880490 TCGGAATTACTTGCCGCATAAAT 59.120 39.130 0.00 0.00 44.45 1.40
7345 8425 3.271729 TCGGAATTACTTGCCGCATAAA 58.728 40.909 0.00 0.00 44.45 1.40
7346 8426 2.907634 TCGGAATTACTTGCCGCATAA 58.092 42.857 0.00 0.00 44.45 1.90
7347 8427 2.605837 TCGGAATTACTTGCCGCATA 57.394 45.000 0.00 0.00 44.45 3.14
7348 8428 1.745232 TTCGGAATTACTTGCCGCAT 58.255 45.000 0.00 0.00 44.45 4.73
7349 8429 1.524848 TTTCGGAATTACTTGCCGCA 58.475 45.000 0.00 0.00 44.45 5.69
7351 8431 2.161609 AGCTTTTCGGAATTACTTGCCG 59.838 45.455 0.00 0.00 46.08 5.69
7354 8434 4.485163 CCCAAGCTTTTCGGAATTACTTG 58.515 43.478 14.97 14.97 34.30 3.16
7356 8436 2.492088 GCCCAAGCTTTTCGGAATTACT 59.508 45.455 0.00 0.00 35.50 2.24
7357 8437 2.230266 TGCCCAAGCTTTTCGGAATTAC 59.770 45.455 0.00 0.00 40.80 1.89
7358 8438 2.520069 TGCCCAAGCTTTTCGGAATTA 58.480 42.857 0.00 0.00 40.80 1.40
7359 8439 1.337118 TGCCCAAGCTTTTCGGAATT 58.663 45.000 0.00 0.00 40.80 2.17
7360 8440 1.205417 CATGCCCAAGCTTTTCGGAAT 59.795 47.619 0.00 0.00 40.80 3.01
7363 8443 0.171903 CTCATGCCCAAGCTTTTCGG 59.828 55.000 0.00 0.00 40.80 4.30
7364 8444 0.457337 GCTCATGCCCAAGCTTTTCG 60.457 55.000 0.00 0.00 40.80 3.46
7365 8445 0.893447 AGCTCATGCCCAAGCTTTTC 59.107 50.000 0.00 0.00 46.49 2.29
7366 8446 2.220653 TAGCTCATGCCCAAGCTTTT 57.779 45.000 11.46 0.00 46.49 2.27
7367 8447 2.029623 CATAGCTCATGCCCAAGCTTT 58.970 47.619 11.46 2.13 46.49 3.51
7368 8448 1.688772 CATAGCTCATGCCCAAGCTT 58.311 50.000 11.46 0.00 46.49 3.74
7377 8457 2.328235 GCAGGGTGCATAGCTCATG 58.672 57.895 0.00 0.00 44.26 3.07
7378 8458 4.894201 GCAGGGTGCATAGCTCAT 57.106 55.556 0.00 0.00 44.26 2.90
7388 8468 0.107312 AATAGAGCAGCTGCAGGGTG 60.107 55.000 38.24 12.83 45.16 4.61
7389 8469 0.622665 AAATAGAGCAGCTGCAGGGT 59.377 50.000 38.24 19.88 45.16 4.34
7390 8470 1.760192 AAAATAGAGCAGCTGCAGGG 58.240 50.000 38.24 1.90 45.16 4.45
7391 8471 2.877168 CCTAAAATAGAGCAGCTGCAGG 59.123 50.000 38.24 28.07 45.16 4.85
7392 8472 2.877168 CCCTAAAATAGAGCAGCTGCAG 59.123 50.000 38.24 23.69 45.16 4.41
7393 8473 2.923121 CCCTAAAATAGAGCAGCTGCA 58.077 47.619 38.24 20.45 45.16 4.41
7394 8474 1.606189 GCCCTAAAATAGAGCAGCTGC 59.394 52.381 31.53 31.53 42.49 5.25
7395 8475 2.615912 GTGCCCTAAAATAGAGCAGCTG 59.384 50.000 10.11 10.11 40.31 4.24
7396 8476 2.924421 GTGCCCTAAAATAGAGCAGCT 58.076 47.619 0.00 0.00 40.31 4.24
7398 8478 2.576615 GGGTGCCCTAAAATAGAGCAG 58.423 52.381 0.00 0.00 40.31 4.24
7399 8479 1.214424 GGGGTGCCCTAAAATAGAGCA 59.786 52.381 7.26 0.00 41.34 4.26
7400 8480 1.214424 TGGGGTGCCCTAAAATAGAGC 59.786 52.381 7.26 0.00 45.70 4.09
7401 8481 3.884037 ATGGGGTGCCCTAAAATAGAG 57.116 47.619 7.26 0.00 45.70 2.43
7402 8482 5.941146 ATTATGGGGTGCCCTAAAATAGA 57.059 39.130 7.26 0.00 45.70 1.98
7403 8483 5.480422 GGAATTATGGGGTGCCCTAAAATAG 59.520 44.000 7.26 0.00 45.70 1.73
7404 8484 5.399113 GGAATTATGGGGTGCCCTAAAATA 58.601 41.667 7.26 0.00 45.70 1.40
7405 8485 4.231273 GGAATTATGGGGTGCCCTAAAAT 58.769 43.478 7.26 2.12 45.70 1.82
7406 8486 3.648739 GGAATTATGGGGTGCCCTAAAA 58.351 45.455 7.26 0.00 45.70 1.52
7407 8487 2.423660 CGGAATTATGGGGTGCCCTAAA 60.424 50.000 7.26 0.16 45.70 1.85
7408 8488 1.144093 CGGAATTATGGGGTGCCCTAA 59.856 52.381 7.26 0.00 45.70 2.69
7409 8489 0.768622 CGGAATTATGGGGTGCCCTA 59.231 55.000 7.26 0.74 45.70 3.53
7410 8490 0.991355 TCGGAATTATGGGGTGCCCT 60.991 55.000 7.26 0.00 45.70 5.19
7411 8491 0.106419 TTCGGAATTATGGGGTGCCC 60.106 55.000 0.00 0.00 45.71 5.36
7412 8492 1.770294 TTTCGGAATTATGGGGTGCC 58.230 50.000 0.00 0.00 0.00 5.01
7413 8493 2.481276 GCTTTTCGGAATTATGGGGTGC 60.481 50.000 0.00 0.00 0.00 5.01
7414 8494 3.023832 AGCTTTTCGGAATTATGGGGTG 58.976 45.455 0.00 0.00 0.00 4.61
7415 8495 3.382083 AGCTTTTCGGAATTATGGGGT 57.618 42.857 0.00 0.00 0.00 4.95
7416 8496 3.737972 GCAAGCTTTTCGGAATTATGGGG 60.738 47.826 0.00 0.00 0.00 4.96
7417 8497 3.447742 GCAAGCTTTTCGGAATTATGGG 58.552 45.455 0.00 0.00 0.00 4.00
7418 8498 3.108144 CGCAAGCTTTTCGGAATTATGG 58.892 45.455 0.00 0.00 0.00 2.74
7434 8514 4.858200 GTGCATCGCTCGCGCAAG 62.858 66.667 8.75 0.00 39.67 4.01
7451 8531 4.798344 CAGGGAGCAGCTGCAGGG 62.798 72.222 38.24 19.51 45.16 4.45
7452 8532 3.564345 AACAGGGAGCAGCTGCAGG 62.564 63.158 38.24 23.65 45.16 4.85
7453 8533 2.033757 AACAGGGAGCAGCTGCAG 59.966 61.111 38.24 23.58 45.16 4.41
7454 8534 2.281970 CAACAGGGAGCAGCTGCA 60.282 61.111 38.24 0.00 45.16 4.41
7455 8535 1.900498 AACAACAGGGAGCAGCTGC 60.900 57.895 31.53 31.53 42.49 5.25
7456 8536 1.954528 CAACAACAGGGAGCAGCTG 59.045 57.895 10.11 10.11 0.00 4.24
7457 8537 1.900498 GCAACAACAGGGAGCAGCT 60.900 57.895 0.00 0.00 0.00 4.24
7458 8538 1.530013 ATGCAACAACAGGGAGCAGC 61.530 55.000 0.00 0.00 38.75 5.25
7459 8539 0.963962 AATGCAACAACAGGGAGCAG 59.036 50.000 0.00 0.00 38.75 4.24
7460 8540 0.675083 CAATGCAACAACAGGGAGCA 59.325 50.000 0.00 0.00 39.79 4.26
7461 8541 0.675633 ACAATGCAACAACAGGGAGC 59.324 50.000 0.00 0.00 0.00 4.70
7462 8542 4.218200 TGATTACAATGCAACAACAGGGAG 59.782 41.667 0.00 0.00 0.00 4.30
7463 8543 4.022416 GTGATTACAATGCAACAACAGGGA 60.022 41.667 0.00 0.00 0.00 4.20
7464 8544 4.236935 GTGATTACAATGCAACAACAGGG 58.763 43.478 0.00 0.00 0.00 4.45
7465 8545 4.681025 GTGTGATTACAATGCAACAACAGG 59.319 41.667 0.00 0.00 38.82 4.00
7466 8546 5.400188 CAGTGTGATTACAATGCAACAACAG 59.600 40.000 5.08 0.00 44.56 3.16
7467 8547 5.280164 CAGTGTGATTACAATGCAACAACA 58.720 37.500 5.08 0.00 44.56 3.33
7468 8548 5.811018 CAGTGTGATTACAATGCAACAAC 57.189 39.130 5.08 0.00 44.56 3.32
7476 8556 7.566760 TTTGTCAAGTCAGTGTGATTACAAT 57.433 32.000 0.00 0.00 38.82 2.71
7477 8557 6.993786 TTTGTCAAGTCAGTGTGATTACAA 57.006 33.333 0.00 0.00 38.82 2.41
7478 8558 6.993786 TTTTGTCAAGTCAGTGTGATTACA 57.006 33.333 0.00 0.00 0.00 2.41
7479 8559 7.693952 TCTTTTTGTCAAGTCAGTGTGATTAC 58.306 34.615 0.00 0.00 0.00 1.89
7480 8560 7.768582 TCTCTTTTTGTCAAGTCAGTGTGATTA 59.231 33.333 0.00 0.00 0.00 1.75
7481 8561 6.599244 TCTCTTTTTGTCAAGTCAGTGTGATT 59.401 34.615 0.00 0.00 0.00 2.57
7482 8562 6.115446 TCTCTTTTTGTCAAGTCAGTGTGAT 58.885 36.000 0.00 0.00 0.00 3.06
7483 8563 5.487433 TCTCTTTTTGTCAAGTCAGTGTGA 58.513 37.500 0.00 0.00 0.00 3.58
7484 8564 5.801350 TCTCTTTTTGTCAAGTCAGTGTG 57.199 39.130 0.00 0.00 0.00 3.82
7485 8565 5.220931 GCATCTCTTTTTGTCAAGTCAGTGT 60.221 40.000 0.00 0.00 0.00 3.55
7486 8566 5.008415 AGCATCTCTTTTTGTCAAGTCAGTG 59.992 40.000 0.00 0.00 0.00 3.66
7487 8567 5.008415 CAGCATCTCTTTTTGTCAAGTCAGT 59.992 40.000 0.00 0.00 0.00 3.41
7488 8568 5.450171 CAGCATCTCTTTTTGTCAAGTCAG 58.550 41.667 0.00 0.00 0.00 3.51
7489 8569 4.276678 CCAGCATCTCTTTTTGTCAAGTCA 59.723 41.667 0.00 0.00 0.00 3.41
7490 8570 4.320788 CCCAGCATCTCTTTTTGTCAAGTC 60.321 45.833 0.00 0.00 0.00 3.01
7491 8571 3.571401 CCCAGCATCTCTTTTTGTCAAGT 59.429 43.478 0.00 0.00 0.00 3.16
7492 8572 3.613432 GCCCAGCATCTCTTTTTGTCAAG 60.613 47.826 0.00 0.00 0.00 3.02
7493 8573 2.297033 GCCCAGCATCTCTTTTTGTCAA 59.703 45.455 0.00 0.00 0.00 3.18
7494 8574 1.888512 GCCCAGCATCTCTTTTTGTCA 59.111 47.619 0.00 0.00 0.00 3.58
7495 8575 2.165998 AGCCCAGCATCTCTTTTTGTC 58.834 47.619 0.00 0.00 0.00 3.18
7496 8576 2.299326 AGCCCAGCATCTCTTTTTGT 57.701 45.000 0.00 0.00 0.00 2.83
7497 8577 2.094338 GGAAGCCCAGCATCTCTTTTTG 60.094 50.000 0.00 0.00 0.00 2.44
7498 8578 2.174360 GGAAGCCCAGCATCTCTTTTT 58.826 47.619 0.00 0.00 0.00 1.94
7499 8579 1.076024 TGGAAGCCCAGCATCTCTTTT 59.924 47.619 0.00 0.00 37.58 2.27
7500 8580 0.700564 TGGAAGCCCAGCATCTCTTT 59.299 50.000 0.00 0.00 37.58 2.52
7501 8581 0.700564 TTGGAAGCCCAGCATCTCTT 59.299 50.000 0.00 0.00 44.60 2.85
7502 8582 0.034670 GTTGGAAGCCCAGCATCTCT 60.035 55.000 0.00 0.00 44.60 3.10
7503 8583 0.034670 AGTTGGAAGCCCAGCATCTC 60.035 55.000 0.00 0.00 45.01 2.75
7504 8584 0.323178 CAGTTGGAAGCCCAGCATCT 60.323 55.000 0.00 0.00 45.01 2.90
7505 8585 1.941999 GCAGTTGGAAGCCCAGCATC 61.942 60.000 0.00 0.00 45.01 3.91
7506 8586 1.980772 GCAGTTGGAAGCCCAGCAT 60.981 57.895 0.00 0.00 45.01 3.79
7507 8587 2.598394 GCAGTTGGAAGCCCAGCA 60.598 61.111 0.00 0.00 45.01 4.41
7508 8588 2.598394 TGCAGTTGGAAGCCCAGC 60.598 61.111 0.00 0.00 44.60 4.85
7509 8589 2.620112 CGTGCAGTTGGAAGCCCAG 61.620 63.158 0.00 0.00 44.60 4.45
7510 8590 2.594303 CGTGCAGTTGGAAGCCCA 60.594 61.111 0.00 0.00 41.64 5.36
7511 8591 4.043200 GCGTGCAGTTGGAAGCCC 62.043 66.667 0.42 0.00 35.14 5.19
7513 8593 3.259425 CTGGCGTGCAGTTGGAAGC 62.259 63.158 3.18 3.18 39.79 3.86
7514 8594 2.620112 CCTGGCGTGCAGTTGGAAG 61.620 63.158 0.00 0.00 0.00 3.46
7515 8595 2.594303 CCTGGCGTGCAGTTGGAA 60.594 61.111 0.00 0.00 0.00 3.53
7516 8596 4.641645 CCCTGGCGTGCAGTTGGA 62.642 66.667 0.00 0.00 0.00 3.53
7517 8597 4.954970 ACCCTGGCGTGCAGTTGG 62.955 66.667 0.00 0.00 0.00 3.77
7518 8598 1.169661 TTAACCCTGGCGTGCAGTTG 61.170 55.000 0.00 0.00 0.00 3.16
7519 8599 1.149627 TTAACCCTGGCGTGCAGTT 59.850 52.632 0.00 0.00 0.00 3.16
7520 8600 1.599797 GTTAACCCTGGCGTGCAGT 60.600 57.895 0.00 0.00 0.00 4.40
7521 8601 2.677003 CGTTAACCCTGGCGTGCAG 61.677 63.158 0.00 0.00 0.00 4.41
7522 8602 2.666862 CGTTAACCCTGGCGTGCA 60.667 61.111 0.00 0.00 0.00 4.57
7523 8603 4.097863 GCGTTAACCCTGGCGTGC 62.098 66.667 0.00 0.00 0.00 5.34
7524 8604 2.182614 CTTGCGTTAACCCTGGCGTG 62.183 60.000 0.00 0.00 0.00 5.34
7525 8605 1.964373 CTTGCGTTAACCCTGGCGT 60.964 57.895 0.00 0.00 0.00 5.68
7526 8606 2.867472 CTTGCGTTAACCCTGGCG 59.133 61.111 0.00 0.00 0.00 5.69
7527 8607 1.923227 GAGCTTGCGTTAACCCTGGC 61.923 60.000 0.00 0.00 0.00 4.85
7528 8608 0.321653 AGAGCTTGCGTTAACCCTGG 60.322 55.000 0.00 0.00 0.00 4.45
7529 8609 1.523758 AAGAGCTTGCGTTAACCCTG 58.476 50.000 0.00 0.00 0.00 4.45
7530 8610 2.935676 GCTAAGAGCTTGCGTTAACCCT 60.936 50.000 0.00 0.00 38.45 4.34
7531 8611 1.397343 GCTAAGAGCTTGCGTTAACCC 59.603 52.381 0.00 0.00 38.45 4.11
7532 8612 2.808157 GCTAAGAGCTTGCGTTAACC 57.192 50.000 0.00 0.00 38.45 2.85
7541 8621 5.976326 GTGCCACACAGAGCTAAGAGCTT 62.976 52.174 1.88 0.00 42.26 3.74
7542 8622 4.559364 GTGCCACACAGAGCTAAGAGCT 62.559 54.545 0.00 0.00 43.74 4.09
7543 8623 0.036952 TGCCACACAGAGCTAAGAGC 60.037 55.000 0.00 0.00 42.84 4.09
7544 8624 1.719600 GTGCCACACAGAGCTAAGAG 58.280 55.000 0.00 0.00 34.08 2.85
7545 8625 0.038251 CGTGCCACACAGAGCTAAGA 60.038 55.000 0.00 0.00 33.40 2.10
7546 8626 0.319900 ACGTGCCACACAGAGCTAAG 60.320 55.000 0.00 0.00 33.40 2.18
7547 8627 0.319555 GACGTGCCACACAGAGCTAA 60.320 55.000 0.00 0.00 33.40 3.09
7548 8628 1.289066 GACGTGCCACACAGAGCTA 59.711 57.895 0.00 0.00 33.40 3.32
7549 8629 2.029666 GACGTGCCACACAGAGCT 59.970 61.111 0.00 0.00 33.40 4.09
7550 8630 2.742710 TACGACGTGCCACACAGAGC 62.743 60.000 11.56 0.00 33.40 4.09
7551 8631 1.002250 GTACGACGTGCCACACAGAG 61.002 60.000 11.56 0.00 33.40 3.35
7552 8632 1.008194 GTACGACGTGCCACACAGA 60.008 57.895 11.56 0.00 33.40 3.41
7553 8633 2.019951 GGTACGACGTGCCACACAG 61.020 63.158 27.46 0.00 38.20 3.66
7554 8634 2.027897 GGTACGACGTGCCACACA 59.972 61.111 27.46 0.00 38.20 3.72
7555 8635 2.019951 CAGGTACGACGTGCCACAC 61.020 63.158 32.29 13.02 40.76 3.82
7556 8636 1.529152 ATCAGGTACGACGTGCCACA 61.529 55.000 32.29 20.29 40.76 4.17
7557 8637 0.452987 TATCAGGTACGACGTGCCAC 59.547 55.000 32.29 13.74 40.76 5.01
7558 8638 0.736636 CTATCAGGTACGACGTGCCA 59.263 55.000 32.29 16.54 40.76 4.92
7559 8639 0.030369 CCTATCAGGTACGACGTGCC 59.970 60.000 25.53 25.53 38.59 5.01
7560 8640 0.030369 CCCTATCAGGTACGACGTGC 59.970 60.000 11.56 9.51 34.28 5.34
7561 8641 0.030369 GCCCTATCAGGTACGACGTG 59.970 60.000 11.56 0.00 35.48 4.49
7562 8642 0.394762 TGCCCTATCAGGTACGACGT 60.395 55.000 5.52 5.52 31.93 4.34
7563 8643 0.959553 ATGCCCTATCAGGTACGACG 59.040 55.000 0.00 0.00 31.93 5.12
7564 8644 1.961394 TCATGCCCTATCAGGTACGAC 59.039 52.381 0.00 0.00 31.93 4.34
7565 8645 2.375014 TCATGCCCTATCAGGTACGA 57.625 50.000 0.00 0.00 31.93 3.43
7566 8646 3.259374 AGATTCATGCCCTATCAGGTACG 59.741 47.826 0.00 0.00 31.93 3.67
7567 8647 4.899352 AGATTCATGCCCTATCAGGTAC 57.101 45.455 0.00 0.00 31.93 3.34
7568 8648 4.660303 ACAAGATTCATGCCCTATCAGGTA 59.340 41.667 0.00 0.00 31.93 3.08
7569 8649 3.461085 ACAAGATTCATGCCCTATCAGGT 59.539 43.478 0.00 0.00 31.93 4.00
7570 8650 4.096190 ACAAGATTCATGCCCTATCAGG 57.904 45.455 0.00 0.00 34.30 3.86
7571 8651 5.374921 AGAACAAGATTCATGCCCTATCAG 58.625 41.667 0.00 0.00 0.00 2.90
7572 8652 5.378230 AGAACAAGATTCATGCCCTATCA 57.622 39.130 0.00 0.00 0.00 2.15
7573 8653 5.009410 CCAAGAACAAGATTCATGCCCTATC 59.991 44.000 0.00 0.00 0.00 2.08
7640 8720 3.537206 AATAGGGGGCATCGCTCGC 62.537 63.158 0.00 0.00 42.52 5.03
7648 8728 4.438913 AGATGCTATAAGAATAGGGGGCA 58.561 43.478 0.00 0.00 36.37 5.36
7654 8734 8.075574 CAGCTATCGGAGATGCTATAAGAATAG 58.924 40.741 0.00 0.00 45.12 1.73
7687 8767 2.301583 GAGCCCAAAATGTTGCCCTAAA 59.698 45.455 0.00 0.00 33.01 1.85
7696 8776 2.871096 TTACTCCGAGCCCAAAATGT 57.129 45.000 0.00 0.00 0.00 2.71
7740 8820 0.736053 ACGCTTTCTCGTGCCAAAAA 59.264 45.000 0.00 0.00 41.62 1.94
7741 8821 0.736053 AACGCTTTCTCGTGCCAAAA 59.264 45.000 0.00 0.00 42.46 2.44
7742 8822 0.028770 CAACGCTTTCTCGTGCCAAA 59.971 50.000 0.00 0.00 42.46 3.28
7743 8823 1.646540 CAACGCTTTCTCGTGCCAA 59.353 52.632 0.00 0.00 42.46 4.52
7744 8824 3.329231 CAACGCTTTCTCGTGCCA 58.671 55.556 0.00 0.00 42.46 4.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.