Multiple sequence alignment - TraesCS5A01G391800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G391800 chr5A 100.000 7590 0 0 1 7590 588024759 588017170 0.000000e+00 14017.0
1 TraesCS5A01G391800 chr5A 87.283 173 20 2 1001 1172 494863148 494863319 6.010000e-46 196.0
2 TraesCS5A01G391800 chr5A 84.810 79 6 3 2174 2251 556682321 556682394 2.940000e-09 75.0
3 TraesCS5A01G391800 chr5B 87.800 2205 144 57 22 2185 574062155 574060035 0.000000e+00 2466.0
4 TraesCS5A01G391800 chr5B 91.184 1622 84 18 5479 7075 574056944 574055357 0.000000e+00 2148.0
5 TraesCS5A01G391800 chr5B 87.871 371 38 7 3827 4192 574058508 574058140 5.440000e-116 429.0
6 TraesCS5A01G391800 chr5B 94.071 253 15 0 7092 7344 54859678 54859426 1.190000e-102 385.0
7 TraesCS5A01G391800 chr5B 80.189 530 51 29 3316 3835 574059058 574058573 1.570000e-91 348.0
8 TraesCS5A01G391800 chr5B 90.821 207 14 2 7387 7590 54858373 54858169 9.700000e-69 272.0
9 TraesCS5A01G391800 chr5B 87.671 219 23 2 2248 2466 574060041 574059827 1.260000e-62 252.0
10 TraesCS5A01G391800 chr5B 79.692 389 43 11 5099 5482 574057397 574057040 1.640000e-61 248.0
11 TraesCS5A01G391800 chr5B 79.705 271 36 12 2469 2737 574059790 574059537 2.180000e-40 178.0
12 TraesCS5A01G391800 chr5B 84.932 73 7 2 2179 2251 336799837 336799769 3.800000e-08 71.3
13 TraesCS5A01G391800 chr5D 87.658 2220 129 71 22 2182 467425579 467423446 0.000000e+00 2447.0
14 TraesCS5A01G391800 chr5D 90.255 1765 102 34 5337 7075 467419507 467417787 0.000000e+00 2242.0
15 TraesCS5A01G391800 chr5D 81.932 797 78 37 2942 3699 467422146 467421377 1.400000e-171 614.0
16 TraesCS5A01G391800 chr5D 87.908 306 31 5 2249 2553 467423437 467423137 9.370000e-94 355.0
17 TraesCS5A01G391800 chr5D 89.286 196 14 4 7093 7281 447227130 447226935 9.840000e-59 239.0
18 TraesCS5A01G391800 chr5D 84.615 208 29 3 2545 2751 467423043 467422838 3.590000e-48 204.0
19 TraesCS5A01G391800 chr5D 87.283 173 20 2 1001 1172 391730414 391730585 6.010000e-46 196.0
20 TraesCS5A01G391800 chr1A 98.444 514 8 0 7077 7590 549047450 549046937 0.000000e+00 905.0
21 TraesCS5A01G391800 chrUn 97.652 511 12 0 7080 7590 83344794 83344284 0.000000e+00 878.0
22 TraesCS5A01G391800 chr2D 95.935 246 9 1 808 1053 395147965 395147721 1.530000e-106 398.0
23 TraesCS5A01G391800 chr1B 86.726 226 25 3 7077 7298 525658666 525658442 5.880000e-61 246.0
24 TraesCS5A01G391800 chr1B 86.486 74 8 2 2183 2255 142039723 142039651 6.310000e-11 80.5
25 TraesCS5A01G391800 chr6D 82.508 303 29 10 7289 7587 417517800 417518082 2.120000e-60 244.0
26 TraesCS5A01G391800 chr6D 87.006 177 19 1 7077 7253 417511223 417511395 6.010000e-46 196.0
27 TraesCS5A01G391800 chr6B 82.295 305 28 6 7289 7590 627468853 627468572 2.740000e-59 241.0
28 TraesCS5A01G391800 chr6B 81.967 305 29 6 7289 7590 627510272 627509991 1.270000e-57 235.0
29 TraesCS5A01G391800 chr6B 81.967 305 29 5 7289 7590 627542599 627542318 1.270000e-57 235.0
30 TraesCS5A01G391800 chr6B 79.646 226 27 12 7368 7590 629166937 629166728 2.210000e-30 145.0
31 TraesCS5A01G391800 chr6B 86.111 72 7 3 2183 2251 710003129 710003200 2.940000e-09 75.0
32 TraesCS5A01G391800 chr7A 89.674 184 17 2 1000 1182 78575364 78575182 4.580000e-57 233.0
33 TraesCS5A01G391800 chr7A 89.130 184 18 2 1000 1182 78520558 78520376 2.130000e-55 228.0
34 TraesCS5A01G391800 chr7A 86.111 72 6 4 2183 2251 492257335 492257265 2.940000e-09 75.0
35 TraesCS5A01G391800 chr7B 88.830 188 18 3 997 1182 18218025 18217839 2.130000e-55 228.0
36 TraesCS5A01G391800 chr7B 88.298 188 19 3 997 1182 18506216 18506030 9.910000e-54 222.0
37 TraesCS5A01G391800 chr7B 88.587 184 19 2 1000 1182 19141197 19141015 9.910000e-54 222.0
38 TraesCS5A01G391800 chr7B 86.111 72 6 4 2183 2251 458364546 458364476 2.940000e-09 75.0
39 TraesCS5A01G391800 chr6A 86.111 144 19 1 7077 7219 32896093 32895950 3.670000e-33 154.0
40 TraesCS5A01G391800 chr6A 83.333 114 10 6 7481 7590 32895667 32895559 6.270000e-16 97.1
41 TraesCS5A01G391800 chr2B 88.406 69 8 0 2183 2251 766079403 766079471 4.880000e-12 84.2
42 TraesCS5A01G391800 chr4A 86.111 72 7 3 2183 2251 670946789 670946860 2.940000e-09 75.0
43 TraesCS5A01G391800 chr3D 85.915 71 7 3 2183 2250 603942407 603942477 1.060000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G391800 chr5A 588017170 588024759 7589 True 14017.0 14017 100.000000 1 7590 1 chr5A.!!$R1 7589
1 TraesCS5A01G391800 chr5B 574055357 574062155 6798 True 867.0 2466 84.873143 22 7075 7 chr5B.!!$R3 7053
2 TraesCS5A01G391800 chr5B 54858169 54859678 1509 True 328.5 385 92.446000 7092 7590 2 chr5B.!!$R2 498
3 TraesCS5A01G391800 chr5D 467417787 467425579 7792 True 1172.4 2447 86.473600 22 7075 5 chr5D.!!$R2 7053
4 TraesCS5A01G391800 chr1A 549046937 549047450 513 True 905.0 905 98.444000 7077 7590 1 chr1A.!!$R1 513
5 TraesCS5A01G391800 chrUn 83344284 83344794 510 True 878.0 878 97.652000 7080 7590 1 chrUn.!!$R1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1039 0.183971 GGAGGAGATCAGAGGTCGGA 59.816 60.000 0.00 0.0 0.00 4.55 F
2195 2289 0.179000 TCGTACCTACTCCCTCCGTC 59.821 60.000 0.00 0.0 0.00 4.79 F
2197 2291 0.467106 GTACCTACTCCCTCCGTCCC 60.467 65.000 0.00 0.0 0.00 4.46 F
2200 2294 0.481567 CCTACTCCCTCCGTCCCATA 59.518 60.000 0.00 0.0 0.00 2.74 F
2843 3271 1.066858 TGCGAGAGACCTTCATTGTCC 60.067 52.381 0.00 0.0 33.09 4.02 F
3670 4444 0.108138 ACAGCATCGAGTAACTGGGC 60.108 55.000 10.36 0.0 34.40 5.36 F
3775 4563 0.598065 CTAACAGCTTGGTTGGCCAC 59.402 55.000 3.88 0.0 46.01 5.01 F
4526 5709 0.663153 AACAAAGGTCTTCTGCGCAC 59.337 50.000 5.66 0.0 0.00 5.34 F
5232 6462 0.755686 TTTGCGGGACAAAAAGGCAT 59.244 45.000 0.00 0.0 45.22 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2898 3326 0.621571 TCAGATTCACTGGGGGAGGG 60.622 60.000 0.00 0.00 45.76 4.30 R
3654 4428 0.108138 AGTGCCCAGTTACTCGATGC 60.108 55.000 0.00 0.00 0.00 3.91 R
3663 4437 2.121963 TCTCCCCAGTGCCCAGTT 60.122 61.111 0.00 0.00 0.00 3.16 R
3670 4444 2.564947 GCAGATATAGGTCTCCCCAGTG 59.435 54.545 0.00 0.00 34.66 3.66 R
4259 5430 0.388391 TGTTTGCGCTTTGCTATGGC 60.388 50.000 9.73 0.00 46.63 4.40 R
5213 6443 0.755686 ATGCCTTTTTGTCCCGCAAA 59.244 45.000 0.00 0.00 44.52 3.68 R
5452 6682 0.881118 AATGTTGCGGTAACCTGCTG 59.119 50.000 6.50 0.00 38.55 4.41 R
6053 7393 0.103208 CTACTAGTGGGCTTGCCGAG 59.897 60.000 5.39 3.23 0.00 4.63 R
6909 8266 0.250424 TGCCATACATGCATCGGGAG 60.250 55.000 0.00 0.00 32.85 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 4.382685 GCAGCAGTGGTGGAGTAAATAGTA 60.383 45.833 22.98 0.00 0.00 1.82
60 61 5.024118 AGCAGTGGTGGAGTAAATAGTAGT 58.976 41.667 0.00 0.00 0.00 2.73
93 94 2.900838 AGCATGGCAGCATCGCTC 60.901 61.111 10.71 0.00 36.40 5.03
407 422 3.324930 CCAGCAGTCAGGCAGGGA 61.325 66.667 0.00 0.00 36.85 4.20
408 423 2.268280 CAGCAGTCAGGCAGGGAG 59.732 66.667 0.00 0.00 35.83 4.30
409 424 3.007920 AGCAGTCAGGCAGGGAGG 61.008 66.667 0.00 0.00 35.83 4.30
410 425 4.792804 GCAGTCAGGCAGGGAGGC 62.793 72.222 0.00 0.00 44.61 4.70
573 595 5.711036 GGTGGTGGTGTCTAGATATAGTAGG 59.289 48.000 0.00 0.00 0.00 3.18
737 777 3.889692 CCACCACCACCACAGGCT 61.890 66.667 0.00 0.00 0.00 4.58
738 778 2.281761 CACCACCACCACAGGCTC 60.282 66.667 0.00 0.00 0.00 4.70
739 779 3.570212 ACCACCACCACAGGCTCC 61.570 66.667 0.00 0.00 0.00 4.70
762 802 2.519302 GCACCACTGCAACCCTGT 60.519 61.111 0.00 0.00 43.62 4.00
844 887 1.338200 ACTTAGCCTTGGTTGAGAGCG 60.338 52.381 2.60 0.00 0.00 5.03
846 889 0.532573 TAGCCTTGGTTGAGAGCGAG 59.467 55.000 0.00 0.00 35.05 5.03
869 912 0.252761 TCGAGCCAGATTTCATGCCA 59.747 50.000 0.00 0.00 0.00 4.92
886 929 1.536943 CCATCCTAGCTCGCCCCTAC 61.537 65.000 0.00 0.00 0.00 3.18
896 939 2.264794 GCCCCTACCAGACACACG 59.735 66.667 0.00 0.00 0.00 4.49
899 942 1.590147 CCCTACCAGACACACGTCC 59.410 63.158 0.00 0.00 43.73 4.79
924 969 2.624838 AGTGGTGCTGAATTTTGTCAGG 59.375 45.455 4.49 0.00 44.43 3.86
947 992 2.113139 CGTTGCTGGTTGGGAGGT 59.887 61.111 0.00 0.00 0.00 3.85
957 1002 1.538876 TTGGGAGGTGAGGTGAGGG 60.539 63.158 0.00 0.00 0.00 4.30
958 1003 3.403558 GGGAGGTGAGGTGAGGGC 61.404 72.222 0.00 0.00 0.00 5.19
975 1023 3.515611 CGAGAGGTTCGGGAGGAG 58.484 66.667 0.00 0.00 45.54 3.69
989 1037 1.604604 GAGGAGGAGATCAGAGGTCG 58.395 60.000 0.00 0.00 0.00 4.79
990 1038 0.184933 AGGAGGAGATCAGAGGTCGG 59.815 60.000 0.00 0.00 0.00 4.79
991 1039 0.183971 GGAGGAGATCAGAGGTCGGA 59.816 60.000 0.00 0.00 0.00 4.55
992 1040 1.604604 GAGGAGATCAGAGGTCGGAG 58.395 60.000 0.00 0.00 0.00 4.63
993 1041 0.184933 AGGAGATCAGAGGTCGGAGG 59.815 60.000 0.00 0.00 0.00 4.30
1152 1200 2.344203 CGTCCTCTTCTCCCACGCT 61.344 63.158 0.00 0.00 0.00 5.07
1193 1241 5.043281 TCTCCTCCTCCTCCAAGTAATTACT 60.043 44.000 12.50 12.50 38.39 2.24
1195 1243 4.345547 CCTCCTCCTCCAAGTAATTACTCC 59.654 50.000 18.28 0.00 34.99 3.85
1197 1245 5.600749 TCCTCCTCCAAGTAATTACTCCTT 58.399 41.667 18.28 0.43 34.99 3.36
1213 1271 1.690219 CCTTCCGATCTCCCCCAGTG 61.690 65.000 0.00 0.00 0.00 3.66
1231 1289 0.892755 TGCCGTACCATATCGATCCC 59.107 55.000 0.00 0.00 0.00 3.85
1249 1307 5.514169 GATCCCTCCATTTCCTTTTCTCTT 58.486 41.667 0.00 0.00 0.00 2.85
1252 1310 4.835056 CCCTCCATTTCCTTTTCTCTTTGT 59.165 41.667 0.00 0.00 0.00 2.83
1253 1311 5.279156 CCCTCCATTTCCTTTTCTCTTTGTG 60.279 44.000 0.00 0.00 0.00 3.33
1254 1312 5.279156 CCTCCATTTCCTTTTCTCTTTGTGG 60.279 44.000 0.00 0.00 0.00 4.17
1263 1321 2.045561 TCTCTTTGTGGTTTTGCCGA 57.954 45.000 0.00 0.00 41.21 5.54
1293 1351 1.821216 TTGATTTGCTCTCCCCGTTC 58.179 50.000 0.00 0.00 0.00 3.95
1299 1357 0.400213 TGCTCTCCCCGTTCAAACAT 59.600 50.000 0.00 0.00 0.00 2.71
1342 1413 5.867174 TCGATCTGAATTTTCTTGCGTCTTA 59.133 36.000 0.00 0.00 0.00 2.10
1362 1433 2.325082 GGCGTCCGTGCATGAACTT 61.325 57.895 7.72 0.00 36.28 2.66
1390 1461 1.706443 CTGGGTCCGTACGTTCTTTC 58.294 55.000 15.21 0.00 0.00 2.62
1394 1465 1.403382 GGTCCGTACGTTCTTTCCCTC 60.403 57.143 15.21 0.00 0.00 4.30
1397 1468 2.029649 TCCGTACGTTCTTTCCCTCTTG 60.030 50.000 15.21 0.00 0.00 3.02
1409 1480 2.575532 TCCCTCTTGTTTGCTGTTCTG 58.424 47.619 0.00 0.00 0.00 3.02
1501 1573 3.493272 CAGATCGACGGACATACTATGC 58.507 50.000 0.00 0.00 0.00 3.14
1506 1578 3.497262 TCGACGGACATACTATGCAGTAG 59.503 47.826 0.00 0.00 40.57 2.57
1507 1579 3.365064 CGACGGACATACTATGCAGTAGG 60.365 52.174 0.00 0.00 43.21 3.18
1509 1581 3.821600 ACGGACATACTATGCAGTAGGAG 59.178 47.826 4.96 0.03 40.68 3.69
1551 1625 6.611613 TTGTCTCATTCACAGTAGAGGATT 57.388 37.500 0.00 0.00 0.00 3.01
1556 1630 9.436957 GTCTCATTCACAGTAGAGGATTAAAAA 57.563 33.333 0.00 0.00 0.00 1.94
1663 1738 8.777413 TGTATGCACATAATTAGAGCTTTGATC 58.223 33.333 0.00 0.00 0.00 2.92
1669 1744 6.261826 ACATAATTAGAGCTTTGATCACCTGC 59.738 38.462 0.00 0.00 0.00 4.85
1690 1765 6.183360 CCTGCTGAGATTAATTTGCACCAATA 60.183 38.462 0.00 0.00 0.00 1.90
1701 1776 1.341852 TGCACCAATATGGCATGCATC 59.658 47.619 21.36 3.15 42.35 3.91
1719 1802 3.063997 GCATCCTTGTGAAACTCATACGG 59.936 47.826 0.00 0.00 38.04 4.02
1725 1808 2.563620 TGTGAAACTCATACGGGCACTA 59.436 45.455 0.00 0.00 38.04 2.74
1727 1810 4.189231 GTGAAACTCATACGGGCACTAAT 58.811 43.478 0.00 0.00 0.00 1.73
1728 1811 4.634443 GTGAAACTCATACGGGCACTAATT 59.366 41.667 0.00 0.00 0.00 1.40
1729 1812 4.634004 TGAAACTCATACGGGCACTAATTG 59.366 41.667 0.00 0.00 0.00 2.32
1731 1814 4.216411 ACTCATACGGGCACTAATTGTT 57.784 40.909 0.00 0.00 0.00 2.83
1787 1870 4.835615 GTCTGGGTAGTATGATGATCCACT 59.164 45.833 2.89 2.89 0.00 4.00
1803 1886 9.947669 GATGATCCACTTCTGAGAATTAATTTG 57.052 33.333 1.43 0.00 0.00 2.32
1845 1928 2.727123 TTCTGCAGACCCAAGTTCAA 57.273 45.000 18.03 0.00 0.00 2.69
1847 1930 2.783135 TCTGCAGACCCAAGTTCAATC 58.217 47.619 13.74 0.00 0.00 2.67
1851 1934 4.922206 TGCAGACCCAAGTTCAATCTATT 58.078 39.130 0.00 0.00 0.00 1.73
1897 1991 6.430000 TCAGTCTAATTTGACACCTTTAAGGC 59.570 38.462 19.82 0.00 39.27 4.35
1899 1993 5.180680 GTCTAATTTGACACCTTTAAGGCGT 59.819 40.000 11.45 7.76 39.63 5.68
1901 1995 5.622770 AATTTGACACCTTTAAGGCGTAG 57.377 39.130 11.45 1.54 39.63 3.51
1902 1996 2.754946 TGACACCTTTAAGGCGTAGG 57.245 50.000 11.45 0.00 39.63 3.18
1912 2006 7.228706 CACCTTTAAGGCGTAGGATTGAATTAT 59.771 37.037 11.45 0.00 39.63 1.28
1913 2007 8.434392 ACCTTTAAGGCGTAGGATTGAATTATA 58.566 33.333 11.45 0.00 39.63 0.98
2156 2250 6.986231 CCTTGGAGCAAAAGAAAACAAGTAAT 59.014 34.615 0.00 0.00 33.81 1.89
2157 2251 8.141268 CCTTGGAGCAAAAGAAAACAAGTAATA 58.859 33.333 0.00 0.00 33.81 0.98
2158 2252 9.528018 CTTGGAGCAAAAGAAAACAAGTAATAA 57.472 29.630 0.00 0.00 31.73 1.40
2159 2253 9.877178 TTGGAGCAAAAGAAAACAAGTAATAAA 57.123 25.926 0.00 0.00 0.00 1.40
2182 2276 6.141560 ACTAGCTAATGTTAGGTTCGTACC 57.858 41.667 9.47 2.44 45.39 3.34
2192 2286 1.397672 GGTTCGTACCTACTCCCTCC 58.602 60.000 3.61 0.00 41.53 4.30
2193 2287 1.020437 GTTCGTACCTACTCCCTCCG 58.980 60.000 0.00 0.00 0.00 4.63
2194 2288 0.620556 TTCGTACCTACTCCCTCCGT 59.379 55.000 0.00 0.00 0.00 4.69
2195 2289 0.179000 TCGTACCTACTCCCTCCGTC 59.821 60.000 0.00 0.00 0.00 4.79
2196 2290 0.817229 CGTACCTACTCCCTCCGTCC 60.817 65.000 0.00 0.00 0.00 4.79
2197 2291 0.467106 GTACCTACTCCCTCCGTCCC 60.467 65.000 0.00 0.00 0.00 4.46
2198 2292 0.920763 TACCTACTCCCTCCGTCCCA 60.921 60.000 0.00 0.00 0.00 4.37
2199 2293 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
2200 2294 0.481567 CCTACTCCCTCCGTCCCATA 59.518 60.000 0.00 0.00 0.00 2.74
2201 2295 1.133262 CCTACTCCCTCCGTCCCATAA 60.133 57.143 0.00 0.00 0.00 1.90
2202 2296 2.492940 CCTACTCCCTCCGTCCCATAAT 60.493 54.545 0.00 0.00 0.00 1.28
2203 2297 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2204 2298 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2205 2299 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2206 2300 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2207 2301 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2208 2302 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2209 2303 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2210 2304 3.244112 CCTCCGTCCCATAATGTAAGACC 60.244 52.174 0.00 0.00 0.00 3.85
2211 2305 3.641906 CTCCGTCCCATAATGTAAGACCT 59.358 47.826 0.00 0.00 0.00 3.85
2212 2306 4.035112 TCCGTCCCATAATGTAAGACCTT 58.965 43.478 0.00 0.00 0.00 3.50
2213 2307 4.472108 TCCGTCCCATAATGTAAGACCTTT 59.528 41.667 0.00 0.00 0.00 3.11
2214 2308 5.045432 TCCGTCCCATAATGTAAGACCTTTT 60.045 40.000 0.00 0.00 0.00 2.27
2215 2309 5.650703 CCGTCCCATAATGTAAGACCTTTTT 59.349 40.000 0.00 0.00 0.00 1.94
2238 2332 9.902684 TTTTTAACACGGTCTTATATTATGGGA 57.097 29.630 0.00 0.00 0.00 4.37
2240 2334 9.496873 TTTAACACGGTCTTATATTATGGGATG 57.503 33.333 0.00 0.00 0.00 3.51
2241 2335 6.928348 ACACGGTCTTATATTATGGGATGA 57.072 37.500 0.00 0.00 0.00 2.92
2242 2336 7.311092 ACACGGTCTTATATTATGGGATGAA 57.689 36.000 0.00 0.00 0.00 2.57
2243 2337 7.741785 ACACGGTCTTATATTATGGGATGAAA 58.258 34.615 0.00 0.00 0.00 2.69
2244 2338 7.878127 ACACGGTCTTATATTATGGGATGAAAG 59.122 37.037 0.00 0.00 0.00 2.62
2245 2339 7.334421 CACGGTCTTATATTATGGGATGAAAGG 59.666 40.741 0.00 0.00 0.00 3.11
2246 2340 7.236847 ACGGTCTTATATTATGGGATGAAAGGA 59.763 37.037 0.00 0.00 0.00 3.36
2252 2346 2.622064 ATGGGATGAAAGGAGTACGC 57.378 50.000 0.00 0.00 0.00 4.42
2256 2350 3.452990 TGGGATGAAAGGAGTACGCAATA 59.547 43.478 0.00 0.00 0.00 1.90
2335 2429 7.553334 TGTTCGAGTCAAATATAGCTAGGTTT 58.447 34.615 0.00 0.00 0.00 3.27
2336 2430 8.038944 TGTTCGAGTCAAATATAGCTAGGTTTT 58.961 33.333 0.00 0.00 0.00 2.43
2337 2431 9.525409 GTTCGAGTCAAATATAGCTAGGTTTTA 57.475 33.333 0.00 0.00 0.00 1.52
2368 2466 8.915654 GTCAAAATTATAAAGCCACTGAGTTTG 58.084 33.333 0.00 0.00 0.00 2.93
2389 2487 5.694674 TGCTCAAAAAGTTTGTAAAAGCG 57.305 34.783 0.98 0.00 0.00 4.68
2474 2606 8.607459 CCAATCATGATTACTACTTGTCAGTTC 58.393 37.037 20.32 0.00 34.06 3.01
2529 2661 5.669477 ACTTTGTAGCAATTTTGGCTGAAA 58.331 33.333 0.00 0.00 42.62 2.69
2532 2664 7.599998 ACTTTGTAGCAATTTTGGCTGAAATAG 59.400 33.333 0.00 0.00 42.62 1.73
2578 2812 6.114221 CTGTACTTCTCACAGTAGTAGCTC 57.886 45.833 0.00 0.00 38.86 4.09
2581 2815 6.659668 TGTACTTCTCACAGTAGTAGCTCAAT 59.340 38.462 0.00 0.00 30.38 2.57
2597 2831 9.155975 AGTAGCTCAATAAACATTCTTACAGTG 57.844 33.333 0.00 0.00 0.00 3.66
2751 2985 6.458751 CCATGTGTCAATGGCTATAAAGTGAC 60.459 42.308 5.84 5.84 40.74 3.67
2752 2986 4.941263 TGTGTCAATGGCTATAAAGTGACC 59.059 41.667 9.35 3.43 35.59 4.02
2754 2988 5.414454 GTGTCAATGGCTATAAAGTGACCAA 59.586 40.000 9.35 0.00 35.59 3.67
2755 2989 6.007076 TGTCAATGGCTATAAAGTGACCAAA 58.993 36.000 9.35 0.00 35.59 3.28
2757 2991 7.014711 TGTCAATGGCTATAAAGTGACCAAAAA 59.985 33.333 9.35 0.00 35.59 1.94
2758 2992 8.034804 GTCAATGGCTATAAAGTGACCAAAAAT 58.965 33.333 2.13 0.00 33.30 1.82
2759 2993 8.592809 TCAATGGCTATAAAGTGACCAAAAATT 58.407 29.630 0.00 0.00 33.30 1.82
2762 2996 7.543756 TGGCTATAAAGTGACCAAAAATTAGC 58.456 34.615 0.00 0.00 0.00 3.09
2763 2997 7.396055 TGGCTATAAAGTGACCAAAAATTAGCT 59.604 33.333 0.00 0.00 0.00 3.32
2764 2998 7.915923 GGCTATAAAGTGACCAAAAATTAGCTC 59.084 37.037 0.00 0.00 0.00 4.09
2765 2999 8.458843 GCTATAAAGTGACCAAAAATTAGCTCA 58.541 33.333 0.00 0.00 0.00 4.26
2770 3004 8.635765 AAGTGACCAAAAATTAGCTCATAAGA 57.364 30.769 0.00 0.00 0.00 2.10
2772 3006 7.885399 AGTGACCAAAAATTAGCTCATAAGACT 59.115 33.333 0.00 0.00 0.00 3.24
2776 3010 9.959721 ACCAAAAATTAGCTCATAAGACTAAGA 57.040 29.630 0.00 0.00 30.20 2.10
2781 3015 9.944376 AAATTAGCTCATAAGACTAAGACAACA 57.056 29.630 0.00 0.00 30.20 3.33
2817 3245 9.391006 TGTTAGAAGTTGAACATACAGAAAGTT 57.609 29.630 0.00 0.00 30.72 2.66
2839 3267 7.275920 AGTTTATTATGCGAGAGACCTTCATT 58.724 34.615 0.00 0.00 0.00 2.57
2840 3268 7.225538 AGTTTATTATGCGAGAGACCTTCATTG 59.774 37.037 0.00 0.00 0.00 2.82
2841 3269 4.471904 TTATGCGAGAGACCTTCATTGT 57.528 40.909 0.00 0.00 0.00 2.71
2842 3270 2.370281 TGCGAGAGACCTTCATTGTC 57.630 50.000 0.00 0.00 0.00 3.18
2843 3271 1.066858 TGCGAGAGACCTTCATTGTCC 60.067 52.381 0.00 0.00 33.09 4.02
2844 3272 1.066858 GCGAGAGACCTTCATTGTCCA 60.067 52.381 0.00 0.00 33.09 4.02
2845 3273 2.612972 GCGAGAGACCTTCATTGTCCAA 60.613 50.000 0.00 0.00 33.09 3.53
2846 3274 3.866651 CGAGAGACCTTCATTGTCCAAT 58.133 45.455 0.00 0.00 33.09 3.16
2897 3325 8.252624 AGTGATACTTAGTTTCTAATCCCTCC 57.747 38.462 4.61 0.00 0.00 4.30
2898 3326 7.290481 AGTGATACTTAGTTTCTAATCCCTCCC 59.710 40.741 4.61 0.00 0.00 4.30
2901 3329 2.993604 AGTTTCTAATCCCTCCCCCT 57.006 50.000 0.00 0.00 0.00 4.79
2902 3330 2.777913 AGTTTCTAATCCCTCCCCCTC 58.222 52.381 0.00 0.00 0.00 4.30
2912 3340 3.547737 TCCCCCTCCCCCAGTGAA 61.548 66.667 0.00 0.00 0.00 3.18
2914 3342 2.386935 CCCCCTCCCCCAGTGAATC 61.387 68.421 0.00 0.00 0.00 2.52
2915 3343 1.308216 CCCCTCCCCCAGTGAATCT 60.308 63.158 0.00 0.00 0.00 2.40
2922 3350 4.079787 CCTCCCCCAGTGAATCTGAATTTA 60.080 45.833 0.00 0.00 46.27 1.40
2950 3685 1.722011 ACCTATGCGTGTACTTGCAC 58.278 50.000 13.54 0.00 45.07 4.57
3002 3740 2.418746 GCATGCTTAAGACCCTCGAGAA 60.419 50.000 15.71 0.00 0.00 2.87
3050 3788 4.735132 TGCTGCCGTGCCGACTAC 62.735 66.667 0.00 0.00 0.00 2.73
3098 3836 7.459795 TTTATTCCCAATGCGCATATTATGA 57.540 32.000 25.61 13.06 0.00 2.15
3130 3868 9.994432 CTACAAATTTTCCTCAGATACAACATC 57.006 33.333 0.00 0.00 0.00 3.06
3134 3872 9.918630 AAATTTTCCTCAGATACAACATCTTTG 57.081 29.630 0.00 0.00 0.00 2.77
3136 3874 8.690203 TTTTCCTCAGATACAACATCTTTGAA 57.310 30.769 0.00 0.00 0.00 2.69
3162 3900 9.959721 ATTTTTAACTAGCAGGTTATCAGAGAA 57.040 29.630 0.00 0.00 32.64 2.87
3166 3904 9.959721 TTAACTAGCAGGTTATCAGAGAAATTT 57.040 29.630 0.00 0.00 32.64 1.82
3292 4048 8.944212 TCATTCTGTATGACGTACGTTATATG 57.056 34.615 28.53 23.46 38.35 1.78
3299 4055 7.863877 TGTATGACGTACGTTATATGAAGCATT 59.136 33.333 28.53 8.17 36.01 3.56
3300 4056 6.505039 TGACGTACGTTATATGAAGCATTG 57.495 37.500 23.70 0.00 0.00 2.82
3301 4057 5.051307 TGACGTACGTTATATGAAGCATTGC 60.051 40.000 23.70 0.00 0.00 3.56
3307 4063 7.133891 ACGTTATATGAAGCATTGCCTATTC 57.866 36.000 4.70 3.67 0.00 1.75
3328 4084 9.577110 CTATTCGTAAATGTTACCTAGTTCACA 57.423 33.333 0.00 0.00 0.00 3.58
3343 4099 7.094634 ACCTAGTTCACACATGATTGCTAAAAG 60.095 37.037 0.00 0.00 33.85 2.27
3360 4116 6.113411 GCTAAAAGGTATTTCTCTGCTGGTA 58.887 40.000 0.00 0.00 0.00 3.25
3361 4117 6.598064 GCTAAAAGGTATTTCTCTGCTGGTAA 59.402 38.462 0.00 0.00 0.00 2.85
3363 4119 7.454260 AAAAGGTATTTCTCTGCTGGTAAAG 57.546 36.000 0.00 0.00 0.00 1.85
3364 4120 5.104259 AGGTATTTCTCTGCTGGTAAAGG 57.896 43.478 0.00 0.00 0.00 3.11
3365 4121 4.536489 AGGTATTTCTCTGCTGGTAAAGGT 59.464 41.667 0.00 0.00 0.00 3.50
3366 4122 4.636206 GGTATTTCTCTGCTGGTAAAGGTG 59.364 45.833 0.00 0.00 0.00 4.00
3369 4125 4.967084 TTCTCTGCTGGTAAAGGTGTTA 57.033 40.909 0.00 0.00 0.00 2.41
3373 4129 7.195374 TCTCTGCTGGTAAAGGTGTTATATT 57.805 36.000 0.00 0.00 0.00 1.28
3383 4139 8.945057 GGTAAAGGTGTTATATTTCCGTGTTTA 58.055 33.333 0.00 0.00 0.00 2.01
3425 4192 6.049149 GCTTGTCATATAGGCAGTGAACTAA 58.951 40.000 0.00 0.00 30.49 2.24
3428 4195 9.764363 CTTGTCATATAGGCAGTGAACTAATTA 57.236 33.333 0.00 0.00 30.49 1.40
3507 4279 9.045223 GTTTGAAGCAAAAGATAAACCTTTGAT 57.955 29.630 0.00 0.00 36.57 2.57
3565 4337 9.241317 GAATGTAAGTTCATGGCAATTAGAATG 57.759 33.333 0.00 0.00 0.00 2.67
3570 4342 5.716228 AGTTCATGGCAATTAGAATGTTGGA 59.284 36.000 0.00 0.00 0.00 3.53
3578 4350 7.029563 GGCAATTAGAATGTTGGAAAGTACAG 58.970 38.462 0.00 0.00 0.00 2.74
3654 4428 6.216569 ACGTGGCTATCTATGTGAAATACAG 58.783 40.000 0.00 0.00 43.80 2.74
3663 4437 7.272037 TCTATGTGAAATACAGCATCGAGTA 57.728 36.000 0.00 0.00 43.80 2.59
3670 4444 0.108138 ACAGCATCGAGTAACTGGGC 60.108 55.000 10.36 0.00 34.40 5.36
3699 4487 3.919216 AGACCTATATCTGCGCATGTTC 58.081 45.455 12.24 0.00 0.00 3.18
3701 4489 2.634940 ACCTATATCTGCGCATGTTCCT 59.365 45.455 12.24 0.00 0.00 3.36
3702 4490 3.071602 ACCTATATCTGCGCATGTTCCTT 59.928 43.478 12.24 0.00 0.00 3.36
3703 4491 3.434641 CCTATATCTGCGCATGTTCCTTG 59.565 47.826 12.24 0.00 0.00 3.61
3704 4492 2.689553 TATCTGCGCATGTTCCTTGA 57.310 45.000 12.24 1.49 0.00 3.02
3705 4493 1.825090 ATCTGCGCATGTTCCTTGAA 58.175 45.000 12.24 0.00 0.00 2.69
3706 4494 1.825090 TCTGCGCATGTTCCTTGAAT 58.175 45.000 12.24 0.00 0.00 2.57
3707 4495 2.161855 TCTGCGCATGTTCCTTGAATT 58.838 42.857 12.24 0.00 0.00 2.17
3708 4496 3.342719 TCTGCGCATGTTCCTTGAATTA 58.657 40.909 12.24 0.00 0.00 1.40
3709 4497 3.947196 TCTGCGCATGTTCCTTGAATTAT 59.053 39.130 12.24 0.00 0.00 1.28
3710 4498 4.035558 TCTGCGCATGTTCCTTGAATTATC 59.964 41.667 12.24 0.00 0.00 1.75
3711 4499 3.242706 TGCGCATGTTCCTTGAATTATCG 60.243 43.478 5.66 0.00 0.00 2.92
3712 4500 3.291585 CGCATGTTCCTTGAATTATCGC 58.708 45.455 0.00 0.00 0.00 4.58
3713 4501 3.002656 CGCATGTTCCTTGAATTATCGCT 59.997 43.478 0.00 0.00 0.00 4.93
3714 4502 4.211164 CGCATGTTCCTTGAATTATCGCTA 59.789 41.667 0.00 0.00 0.00 4.26
3715 4503 5.277297 CGCATGTTCCTTGAATTATCGCTAA 60.277 40.000 0.00 0.00 0.00 3.09
3716 4504 6.566564 CGCATGTTCCTTGAATTATCGCTAAT 60.567 38.462 0.00 0.00 0.00 1.73
3717 4505 6.580041 GCATGTTCCTTGAATTATCGCTAATG 59.420 38.462 0.00 0.00 0.00 1.90
3718 4506 7.642669 CATGTTCCTTGAATTATCGCTAATGT 58.357 34.615 0.00 0.00 0.00 2.71
3719 4507 8.773645 CATGTTCCTTGAATTATCGCTAATGTA 58.226 33.333 0.00 0.00 0.00 2.29
3720 4508 8.138365 TGTTCCTTGAATTATCGCTAATGTAC 57.862 34.615 0.00 0.00 0.00 2.90
3721 4509 7.766738 TGTTCCTTGAATTATCGCTAATGTACA 59.233 33.333 0.00 0.00 0.00 2.90
3722 4510 8.774586 GTTCCTTGAATTATCGCTAATGTACAT 58.225 33.333 1.41 1.41 0.00 2.29
3723 4511 8.310406 TCCTTGAATTATCGCTAATGTACATG 57.690 34.615 9.63 0.00 0.00 3.21
3724 4512 7.017645 CCTTGAATTATCGCTAATGTACATGC 58.982 38.462 9.63 8.60 0.00 4.06
3725 4513 7.307930 CCTTGAATTATCGCTAATGTACATGCA 60.308 37.037 9.63 0.00 0.00 3.96
3726 4514 7.671495 TGAATTATCGCTAATGTACATGCAT 57.329 32.000 9.63 8.30 0.00 3.96
3727 4515 8.098220 TGAATTATCGCTAATGTACATGCATT 57.902 30.769 9.63 5.32 41.42 3.56
3728 4516 8.567104 TGAATTATCGCTAATGTACATGCATTT 58.433 29.630 9.63 0.00 39.50 2.32
3729 4517 9.398170 GAATTATCGCTAATGTACATGCATTTT 57.602 29.630 9.63 0.00 39.50 1.82
3730 4518 8.732413 ATTATCGCTAATGTACATGCATTTTG 57.268 30.769 9.63 0.00 39.50 2.44
3731 4519 5.559427 TCGCTAATGTACATGCATTTTGT 57.441 34.783 9.63 0.00 39.50 2.83
3732 4520 5.331098 TCGCTAATGTACATGCATTTTGTG 58.669 37.500 9.63 2.23 39.50 3.33
3744 4532 6.648725 ACATGCATTTTGTGGTTGGTTATAAC 59.351 34.615 7.09 7.09 0.00 1.89
3746 4534 6.821388 TGCATTTTGTGGTTGGTTATAACTT 58.179 32.000 15.05 0.00 0.00 2.66
3747 4535 7.952671 TGCATTTTGTGGTTGGTTATAACTTA 58.047 30.769 15.05 2.67 0.00 2.24
3748 4536 8.589338 TGCATTTTGTGGTTGGTTATAACTTAT 58.411 29.630 15.05 0.00 0.00 1.73
3775 4563 0.598065 CTAACAGCTTGGTTGGCCAC 59.402 55.000 3.88 0.00 46.01 5.01
3776 4564 0.825840 TAACAGCTTGGTTGGCCACC 60.826 55.000 3.88 11.51 46.01 4.61
3813 4644 2.159128 GCAGATAGCAGCTTCAGACTGA 60.159 50.000 0.00 0.00 44.79 3.41
3851 4754 9.155975 CCATATACCTGCTGATGAGTTTATTAC 57.844 37.037 0.00 0.00 0.00 1.89
3938 4841 8.921670 GTGGTAGTTGTTTATTAAAAAGGCATG 58.078 33.333 0.00 0.00 0.00 4.06
3952 4856 3.182887 AGGCATGGGGTAAAATGTTCA 57.817 42.857 0.00 0.00 0.00 3.18
3976 4880 9.326413 TCAATTTATGTTTAGTAGAGCCTAAGC 57.674 33.333 0.00 0.00 40.32 3.09
4033 4938 6.477053 TTTCCAAATGACATGTCCAAAAGA 57.523 33.333 22.85 11.46 0.00 2.52
4106 5011 6.166279 GTTTATGAGGATTCACACACAGAGA 58.834 40.000 0.00 0.00 35.83 3.10
4113 5018 0.829990 TCACACACAGAGAGTTGCCA 59.170 50.000 0.00 0.00 0.00 4.92
4124 5029 6.372659 CACAGAGAGTTGCCAGTATGTAATTT 59.627 38.462 0.00 0.00 0.00 1.82
4125 5030 6.942576 ACAGAGAGTTGCCAGTATGTAATTTT 59.057 34.615 0.00 0.00 0.00 1.82
4178 5084 9.865321 AATCTTAATTGCTAGAACGTGTACTAA 57.135 29.630 0.00 0.00 0.00 2.24
4225 5131 5.390567 GGAACCTATAAACACACGAAGCAAG 60.391 44.000 0.00 0.00 0.00 4.01
4226 5132 4.890088 ACCTATAAACACACGAAGCAAGA 58.110 39.130 0.00 0.00 0.00 3.02
4255 5382 4.671377 TGAACTCAACACAAGCAATCAAC 58.329 39.130 0.00 0.00 0.00 3.18
4259 5430 6.064846 ACTCAACACAAGCAATCAACTAAG 57.935 37.500 0.00 0.00 0.00 2.18
4269 5440 4.706476 AGCAATCAACTAAGCCATAGCAAA 59.294 37.500 0.00 0.00 43.56 3.68
4284 5455 1.405105 AGCAAAGCGCAAACAAGAGAA 59.595 42.857 11.47 0.00 46.13 2.87
4287 5458 3.374745 CAAAGCGCAAACAAGAGAACAT 58.625 40.909 11.47 0.00 0.00 2.71
4307 5479 6.966534 ACATTGATAGATGATTGGTTTCCC 57.033 37.500 0.00 0.00 0.00 3.97
4319 5491 3.814005 TGGTTTCCCTAACGCTAGATC 57.186 47.619 0.00 0.00 37.64 2.75
4320 5492 2.100252 TGGTTTCCCTAACGCTAGATCG 59.900 50.000 0.00 0.00 37.64 3.69
4322 5494 3.316308 GGTTTCCCTAACGCTAGATCGTA 59.684 47.826 0.00 0.00 42.46 3.43
4334 5507 5.050227 ACGCTAGATCGTAGTGTAGATGAAC 60.050 44.000 13.39 0.00 41.36 3.18
4352 5525 4.973168 TGAACAATCCAAGTGCTAGAAGT 58.027 39.130 0.00 0.00 0.00 3.01
4355 5528 3.503748 ACAATCCAAGTGCTAGAAGTTGC 59.496 43.478 12.36 0.00 0.00 4.17
4379 5552 5.447954 CGAGAGAGTGACAATATGACTCGTT 60.448 44.000 0.00 0.00 40.92 3.85
4409 5583 3.674997 TGATGTTGTGTAGAAAGGGAGC 58.325 45.455 0.00 0.00 0.00 4.70
4428 5602 0.804989 CCGCAGTTGGGTTCATCTTC 59.195 55.000 0.00 0.00 0.00 2.87
4456 5639 5.174037 TCCGATAAACTTGGGTTCATCTT 57.826 39.130 0.00 0.00 34.14 2.40
4469 5652 6.903516 TGGGTTCATCTTCATAGTCATGATT 58.096 36.000 0.00 0.00 40.85 2.57
4474 5657 8.449397 GTTCATCTTCATAGTCATGATTATGGC 58.551 37.037 28.13 4.75 40.85 4.40
4475 5658 7.682628 TCATCTTCATAGTCATGATTATGGCA 58.317 34.615 28.13 18.37 41.41 4.92
4476 5659 8.326529 TCATCTTCATAGTCATGATTATGGCAT 58.673 33.333 28.13 18.28 41.41 4.40
4477 5660 7.916914 TCTTCATAGTCATGATTATGGCATG 57.083 36.000 28.13 18.66 41.41 4.06
4478 5661 6.373495 TCTTCATAGTCATGATTATGGCATGC 59.627 38.462 28.13 9.90 41.41 4.06
4479 5662 5.812286 TCATAGTCATGATTATGGCATGCT 58.188 37.500 28.13 8.83 41.41 3.79
4481 5664 4.094830 AGTCATGATTATGGCATGCTCA 57.905 40.909 18.92 13.31 41.41 4.26
4482 5665 4.663334 AGTCATGATTATGGCATGCTCAT 58.337 39.130 18.92 19.97 41.41 2.90
4485 5668 4.457949 TCATGATTATGGCATGCTCATGTC 59.542 41.667 31.44 24.08 42.32 3.06
4492 5675 3.795623 GGCATGCTCATGTCAAATCTT 57.204 42.857 18.92 0.00 42.66 2.40
4493 5676 4.906065 GGCATGCTCATGTCAAATCTTA 57.094 40.909 18.92 0.00 42.66 2.10
4494 5677 5.449107 GGCATGCTCATGTCAAATCTTAT 57.551 39.130 18.92 0.00 42.66 1.73
4495 5678 5.220381 GGCATGCTCATGTCAAATCTTATG 58.780 41.667 18.92 0.00 42.66 1.90
4496 5679 5.009310 GGCATGCTCATGTCAAATCTTATGA 59.991 40.000 18.92 0.00 42.66 2.15
4497 5680 5.913514 GCATGCTCATGTCAAATCTTATGAC 59.086 40.000 11.37 0.00 45.82 3.06
4522 5705 8.947115 ACATATAGTAAAACAAAGGTCTTCTGC 58.053 33.333 0.00 0.00 0.00 4.26
4526 5709 0.663153 AACAAAGGTCTTCTGCGCAC 59.337 50.000 5.66 0.00 0.00 5.34
4546 5729 6.750501 GCGCACAATAAGGATATCGAAGTATA 59.249 38.462 0.30 0.00 0.00 1.47
4560 5743 7.972832 ATCGAAGTATAACAAAAGGTTCACA 57.027 32.000 0.00 0.00 40.96 3.58
4561 5744 7.181143 TCGAAGTATAACAAAAGGTTCACAC 57.819 36.000 0.00 0.00 40.96 3.82
4567 5750 8.073768 AGTATAACAAAAGGTTCACACGAATTG 58.926 33.333 0.00 0.00 40.96 2.32
4568 5751 3.443976 ACAAAAGGTTCACACGAATTGC 58.556 40.909 0.00 0.00 32.61 3.56
4569 5752 3.130340 ACAAAAGGTTCACACGAATTGCT 59.870 39.130 0.00 0.00 32.61 3.91
4574 5757 2.673368 GGTTCACACGAATTGCTCTAGG 59.327 50.000 0.00 0.00 32.61 3.02
4582 5765 5.705441 ACACGAATTGCTCTAGGATTTTTCA 59.295 36.000 0.00 0.00 0.00 2.69
4604 5787 4.821805 CAGTGATGTGGTACTCCAAGTTTT 59.178 41.667 0.00 0.00 46.15 2.43
4695 5886 5.014123 TCTCCAAGGTGATACTTTGACCATT 59.986 40.000 5.52 0.00 37.36 3.16
4696 5887 5.640147 TCCAAGGTGATACTTTGACCATTT 58.360 37.500 5.52 0.00 37.36 2.32
4697 5888 5.476599 TCCAAGGTGATACTTTGACCATTTG 59.523 40.000 5.52 0.00 37.36 2.32
4701 5892 7.360113 AGGTGATACTTTGACCATTTGTTTT 57.640 32.000 0.00 0.00 31.61 2.43
4725 5916 5.560966 TTTCTTCTTTTTGCGACTGAACT 57.439 34.783 0.00 0.00 0.00 3.01
4729 5920 5.989168 TCTTCTTTTTGCGACTGAACTATCA 59.011 36.000 0.00 0.00 0.00 2.15
4793 5984 7.194607 ACTCATTATGGAATTATGTTCTGCG 57.805 36.000 0.00 0.00 35.05 5.18
4871 6062 4.277515 TCAGATTAAGAGTGCTTGCTGT 57.722 40.909 0.00 0.00 35.56 4.40
4874 6065 5.532406 TCAGATTAAGAGTGCTTGCTGTTTT 59.468 36.000 0.00 0.00 35.56 2.43
4875 6066 6.039717 TCAGATTAAGAGTGCTTGCTGTTTTT 59.960 34.615 0.00 0.00 35.56 1.94
4907 6125 9.147732 TGAAATGACCTATACTATGTGACTCAT 57.852 33.333 0.00 0.00 40.25 2.90
4923 6141 5.361285 GTGACTCATATGAAGTGGTACTCCT 59.639 44.000 6.90 0.00 34.23 3.69
4931 6149 4.669700 TGAAGTGGTACTCCTAGCTTGTA 58.330 43.478 0.00 0.00 34.23 2.41
4935 6153 5.520751 AGTGGTACTCCTAGCTTGTAATCT 58.479 41.667 0.00 0.00 34.23 2.40
4959 6178 4.906618 ACAAAGTCGTCCTGGATTTATGT 58.093 39.130 0.00 0.00 0.00 2.29
4961 6180 5.768164 ACAAAGTCGTCCTGGATTTATGTTT 59.232 36.000 0.00 0.00 0.00 2.83
4962 6181 6.938030 ACAAAGTCGTCCTGGATTTATGTTTA 59.062 34.615 0.00 0.00 0.00 2.01
4965 6184 6.942976 AGTCGTCCTGGATTTATGTTTAGAA 58.057 36.000 0.00 0.00 0.00 2.10
5006 6227 7.097192 TCTTGTGTCATAATGTAGGTTGTCTC 58.903 38.462 0.00 0.00 0.00 3.36
5008 6229 5.247337 TGTGTCATAATGTAGGTTGTCTCCA 59.753 40.000 0.00 0.00 0.00 3.86
5009 6230 5.812642 GTGTCATAATGTAGGTTGTCTCCAG 59.187 44.000 0.00 0.00 0.00 3.86
5010 6231 4.811557 GTCATAATGTAGGTTGTCTCCAGC 59.188 45.833 0.00 0.00 0.00 4.85
5026 6247 2.036604 TCCAGCACGTGATACTTTGACA 59.963 45.455 22.23 0.00 0.00 3.58
5051 6272 6.698008 TCAGTTTCCATAACAATATGCTGG 57.302 37.500 0.00 0.00 38.06 4.85
5062 6283 9.368674 CATAACAATATGCTGGTTCAAATGAAA 57.631 29.630 0.00 0.00 32.87 2.69
5114 6336 5.630004 CGACAACGTAAATTTTGTTTCACG 58.370 37.500 7.24 7.24 36.06 4.35
5123 6347 9.386995 CGTAAATTTTGTTTCACGTTTTGTAAG 57.613 29.630 0.00 0.00 0.00 2.34
5160 6388 9.474920 TTTATGATGAAACCAAGAATGTTTGAC 57.525 29.630 0.00 0.00 36.13 3.18
5169 6397 3.963383 AGAATGTTTGACGGACACAAC 57.037 42.857 0.00 0.00 0.00 3.32
5180 6408 3.020984 ACGGACACAACTTTGGAATTGT 58.979 40.909 0.00 0.00 39.63 2.71
5217 6447 8.524870 ACTCACATGAAGTATTTGATTTTTGC 57.475 30.769 0.00 0.00 0.00 3.68
5219 6449 6.585702 TCACATGAAGTATTTGATTTTTGCGG 59.414 34.615 0.00 0.00 0.00 5.69
5220 6450 5.868801 ACATGAAGTATTTGATTTTTGCGGG 59.131 36.000 0.00 0.00 0.00 6.13
5223 6453 5.010112 TGAAGTATTTGATTTTTGCGGGACA 59.990 36.000 0.00 0.00 0.00 4.02
5224 6454 5.461032 AGTATTTGATTTTTGCGGGACAA 57.539 34.783 0.00 0.00 36.13 3.18
5231 6461 2.202866 TTTGCGGGACAAAAAGGCA 58.797 47.368 0.00 0.00 45.22 4.75
5232 6462 0.755686 TTTGCGGGACAAAAAGGCAT 59.244 45.000 0.00 0.00 45.22 4.40
5240 6470 5.293560 CGGGACAAAAAGGCATTTTTCTTA 58.706 37.500 18.20 0.00 44.80 2.10
5247 6477 8.739039 ACAAAAAGGCATTTTTCTTAAGCTTTT 58.261 25.926 18.20 2.91 44.80 2.27
5280 6510 7.571798 GCAGGACAAAATGGCATTTTTCTTAAG 60.572 37.037 30.19 21.20 40.27 1.85
5319 6549 6.777580 GCATTTTCCCCATATCTCCTTCTTTA 59.222 38.462 0.00 0.00 0.00 1.85
5320 6550 7.255625 GCATTTTCCCCATATCTCCTTCTTTAC 60.256 40.741 0.00 0.00 0.00 2.01
5321 6551 6.901615 TTTCCCCATATCTCCTTCTTTACA 57.098 37.500 0.00 0.00 0.00 2.41
5322 6552 5.888982 TCCCCATATCTCCTTCTTTACAC 57.111 43.478 0.00 0.00 0.00 2.90
5323 6553 5.538877 TCCCCATATCTCCTTCTTTACACT 58.461 41.667 0.00 0.00 0.00 3.55
5324 6554 6.689561 TCCCCATATCTCCTTCTTTACACTA 58.310 40.000 0.00 0.00 0.00 2.74
5325 6555 7.136885 TCCCCATATCTCCTTCTTTACACTAA 58.863 38.462 0.00 0.00 0.00 2.24
5326 6556 7.070821 TCCCCATATCTCCTTCTTTACACTAAC 59.929 40.741 0.00 0.00 0.00 2.34
5327 6557 7.071321 CCCCATATCTCCTTCTTTACACTAACT 59.929 40.741 0.00 0.00 0.00 2.24
5328 6558 7.928706 CCCATATCTCCTTCTTTACACTAACTG 59.071 40.741 0.00 0.00 0.00 3.16
5329 6559 7.439655 CCATATCTCCTTCTTTACACTAACTGC 59.560 40.741 0.00 0.00 0.00 4.40
5330 6560 5.801531 TCTCCTTCTTTACACTAACTGCA 57.198 39.130 0.00 0.00 0.00 4.41
5331 6561 5.784177 TCTCCTTCTTTACACTAACTGCAG 58.216 41.667 13.48 13.48 0.00 4.41
5332 6562 5.538813 TCTCCTTCTTTACACTAACTGCAGA 59.461 40.000 23.35 0.00 0.00 4.26
5333 6563 6.041637 TCTCCTTCTTTACACTAACTGCAGAA 59.958 38.462 23.35 7.06 0.00 3.02
5378 6608 4.809193 TCTGGAGTATATGGAGCTGAAGT 58.191 43.478 0.00 0.00 0.00 3.01
5444 6674 9.539194 TCTATATTCCTCTCAGATAATTGCTCA 57.461 33.333 0.00 0.00 0.00 4.26
5462 6692 6.194796 TGCTCATTAATTTCAGCAGGTTAC 57.805 37.500 8.73 0.00 36.96 2.50
5463 6693 5.125417 TGCTCATTAATTTCAGCAGGTTACC 59.875 40.000 8.73 0.00 36.96 2.85
5551 6880 3.788227 TTTGGCTCCACTGAGTACAAT 57.212 42.857 0.00 0.00 40.95 2.71
5561 6890 4.237724 CACTGAGTACAATCGAGCTTGAA 58.762 43.478 7.99 0.00 0.00 2.69
5629 6958 8.947115 GTCAAGAAAGGTAAACTACATAGCAAT 58.053 33.333 0.00 0.00 0.00 3.56
5683 7014 7.264373 AGGTTAATCTGCTAAAATCCATTCG 57.736 36.000 0.00 0.00 0.00 3.34
5684 7015 6.828785 AGGTTAATCTGCTAAAATCCATTCGT 59.171 34.615 0.00 0.00 0.00 3.85
5685 7016 7.012421 AGGTTAATCTGCTAAAATCCATTCGTC 59.988 37.037 0.00 0.00 0.00 4.20
5686 7017 7.012421 GGTTAATCTGCTAAAATCCATTCGTCT 59.988 37.037 0.00 0.00 0.00 4.18
5687 7018 8.398665 GTTAATCTGCTAAAATCCATTCGTCTT 58.601 33.333 0.00 0.00 0.00 3.01
5688 7019 9.607988 TTAATCTGCTAAAATCCATTCGTCTTA 57.392 29.630 0.00 0.00 0.00 2.10
5689 7020 8.682936 AATCTGCTAAAATCCATTCGTCTTAT 57.317 30.769 0.00 0.00 0.00 1.73
5690 7021 7.715265 TCTGCTAAAATCCATTCGTCTTATC 57.285 36.000 0.00 0.00 0.00 1.75
5691 7022 6.420903 TCTGCTAAAATCCATTCGTCTTATCG 59.579 38.462 0.00 0.00 0.00 2.92
5692 7023 6.277605 TGCTAAAATCCATTCGTCTTATCGA 58.722 36.000 0.00 0.00 38.08 3.59
5693 7024 6.420903 TGCTAAAATCCATTCGTCTTATCGAG 59.579 38.462 0.00 0.00 40.86 4.04
5794 7129 2.231478 TGCGACCTGAAGAGAAAGGTAG 59.769 50.000 0.00 0.00 46.97 3.18
5795 7130 2.882324 CGACCTGAAGAGAAAGGTAGC 58.118 52.381 0.00 0.00 46.97 3.58
5797 7132 3.591023 GACCTGAAGAGAAAGGTAGCAC 58.409 50.000 0.00 0.00 46.97 4.40
5799 7134 4.417437 ACCTGAAGAGAAAGGTAGCACTA 58.583 43.478 0.00 0.00 45.15 2.74
5800 7135 4.838986 ACCTGAAGAGAAAGGTAGCACTAA 59.161 41.667 0.00 0.00 45.15 2.24
5868 7208 3.425359 CCGTAGCTTCAAGCACAATCTTG 60.425 47.826 13.10 0.00 45.56 3.02
6053 7393 6.076981 ACAAGTGATTGGAAAGTTGATGAC 57.923 37.500 0.00 0.00 32.24 3.06
6056 7396 4.692625 AGTGATTGGAAAGTTGATGACTCG 59.307 41.667 0.00 0.00 37.72 4.18
6057 7397 4.002982 TGATTGGAAAGTTGATGACTCGG 58.997 43.478 0.00 0.00 37.72 4.63
6067 7407 2.527951 GATGACTCGGCAAGCCCACT 62.528 60.000 5.34 0.00 0.00 4.00
6123 7465 3.408634 GCACCACAGTATAAACACAGGT 58.591 45.455 0.00 0.00 0.00 4.00
6239 7587 7.369551 TCACTCTTCTTGTTTTTACCCTCTA 57.630 36.000 0.00 0.00 0.00 2.43
6345 7693 4.559063 CCTGATCCCCCGCAGCAG 62.559 72.222 0.00 0.00 0.00 4.24
6433 7781 1.909986 ACTTCTTCCAGGCCCTAGAAC 59.090 52.381 0.00 0.00 0.00 3.01
6444 7792 1.001068 GCCCTAGAACGCTATCCTTCC 59.999 57.143 0.00 0.00 0.00 3.46
6462 7810 0.674895 CCCTGCAGCCAGTGTAAGAC 60.675 60.000 8.66 0.00 37.38 3.01
6463 7811 0.322975 CCTGCAGCCAGTGTAAGACT 59.677 55.000 8.66 0.00 37.38 3.24
6465 7813 2.072298 CTGCAGCCAGTGTAAGACTTC 58.928 52.381 0.00 0.00 34.31 3.01
6466 7814 1.694150 TGCAGCCAGTGTAAGACTTCT 59.306 47.619 0.00 0.00 29.75 2.85
6467 7815 2.897326 TGCAGCCAGTGTAAGACTTCTA 59.103 45.455 0.00 0.00 29.75 2.10
6471 7819 5.164954 CAGCCAGTGTAAGACTTCTAACTC 58.835 45.833 0.00 0.00 29.75 3.01
6472 7820 5.047660 CAGCCAGTGTAAGACTTCTAACTCT 60.048 44.000 0.00 0.00 29.75 3.24
6503 7857 2.408271 TCCTGCTGCTAAACTCATGG 57.592 50.000 0.00 0.00 0.00 3.66
6525 7879 3.181486 GCACAGAGACTAATGATCACCGA 60.181 47.826 0.00 0.00 0.00 4.69
6750 8106 6.039941 GCTCCTATATATATCAACTCGGCTGT 59.960 42.308 0.00 0.00 0.00 4.40
6777 8133 4.021544 TGTGTTTCCTTTTCAAGTGCTTGT 60.022 37.500 11.17 0.00 41.16 3.16
6781 8138 3.565307 TCCTTTTCAAGTGCTTGTGGAT 58.435 40.909 11.17 0.00 41.16 3.41
6784 8141 5.596361 TCCTTTTCAAGTGCTTGTGGATTTA 59.404 36.000 11.17 0.00 41.16 1.40
6877 8234 1.345415 AGGCGAGAACGGTTTTCCTTA 59.655 47.619 5.90 0.00 40.15 2.69
6909 8266 6.844254 TGATTTACAACAGCGTAATAAACCC 58.156 36.000 0.00 0.00 31.65 4.11
6974 8336 2.233676 TCTCATAAACTCTTGAGCCGCA 59.766 45.455 0.00 0.00 39.36 5.69
7037 8399 5.239306 TGTCTTCTCAAATGTTGACCATGTC 59.761 40.000 0.00 0.00 35.46 3.06
7047 8409 1.860641 TGACCATGTCGGGTAGATGT 58.139 50.000 0.00 0.00 42.53 3.06
7075 8437 3.744660 CAAGGTAGTGGCCCTTATCATC 58.255 50.000 0.00 0.00 40.35 2.92
7090 8452 5.915758 CCTTATCATCGAGACCTTTTACGAG 59.084 44.000 0.00 0.00 38.12 4.18
7134 8496 5.610398 GTTCATTTTTGTGATTGGAGGGTT 58.390 37.500 0.00 0.00 0.00 4.11
7247 8609 1.933853 GTAGCAGTTCTATGGCCAACG 59.066 52.381 10.96 3.40 0.00 4.10
7400 9787 2.100749 TGAGCTGAAGTCGAAGTCAACA 59.899 45.455 0.00 0.00 0.00 3.33
7531 9921 3.071874 TGAGGCCCAACTCAATACAAG 57.928 47.619 0.00 0.00 44.03 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 3.667282 CAGTGCCAGTGCCAGTGC 61.667 66.667 0.00 0.00 36.33 4.40
10 11 2.981909 CCAGTGCCAGTGCCAGTG 60.982 66.667 1.87 1.87 36.33 3.66
11 12 4.962836 GCCAGTGCCAGTGCCAGT 62.963 66.667 0.00 0.00 36.33 4.00
12 13 4.960866 TGCCAGTGCCAGTGCCAG 62.961 66.667 0.00 0.00 36.33 4.85
58 59 2.957491 CTGCTTCTGCTGCTACTACT 57.043 50.000 0.00 0.00 40.48 2.57
98 99 1.529010 CCTGTCAAGTGGCAAGCCA 60.529 57.895 10.24 10.24 45.02 4.75
152 153 2.528743 CGCGCCAACAGGAGCTATG 61.529 63.158 0.00 0.00 44.87 2.23
224 225 4.394078 CCGAGCGGACGTGTCGAA 62.394 66.667 16.40 0.00 35.70 3.71
376 383 3.081804 ACTGCTGGGTAAAAATTCTCGG 58.918 45.455 0.00 0.00 0.00 4.63
406 421 3.695606 TCAGCGTCACCCTGCCTC 61.696 66.667 0.00 0.00 0.00 4.70
407 422 4.008933 GTCAGCGTCACCCTGCCT 62.009 66.667 0.00 0.00 0.00 4.75
408 423 2.646175 TAGTCAGCGTCACCCTGCC 61.646 63.158 0.00 0.00 0.00 4.85
409 424 1.446272 GTAGTCAGCGTCACCCTGC 60.446 63.158 0.00 0.00 0.00 4.85
410 425 0.171455 GAGTAGTCAGCGTCACCCTG 59.829 60.000 0.00 0.00 0.00 4.45
411 426 1.306642 CGAGTAGTCAGCGTCACCCT 61.307 60.000 0.00 0.00 0.00 4.34
412 427 1.136984 CGAGTAGTCAGCGTCACCC 59.863 63.158 0.00 0.00 0.00 4.61
413 428 0.454620 CACGAGTAGTCAGCGTCACC 60.455 60.000 0.00 0.00 35.90 4.02
499 518 4.314440 TCGTCCAGGCAGGCACAC 62.314 66.667 0.00 0.00 37.29 3.82
500 519 4.314440 GTCGTCCAGGCAGGCACA 62.314 66.667 0.00 0.00 37.29 4.57
501 520 4.008933 AGTCGTCCAGGCAGGCAC 62.009 66.667 0.00 0.00 37.29 5.01
762 802 0.856982 TTCTTTTTGAGGGGCCTGGA 59.143 50.000 0.84 0.00 0.00 3.86
809 852 1.762957 CTAAGTAAGCCTGGCTAGCCA 59.237 52.381 33.82 33.82 45.02 4.75
810 853 1.541452 GCTAAGTAAGCCTGGCTAGCC 60.541 57.143 27.71 27.71 46.25 3.93
844 887 3.185246 TGAAATCTGGCTCGATTCCTC 57.815 47.619 5.59 0.95 32.69 3.71
846 889 2.031333 GCATGAAATCTGGCTCGATTCC 60.031 50.000 0.00 0.00 32.69 3.01
869 912 1.228925 GGTAGGGGCGAGCTAGGAT 60.229 63.158 0.00 0.00 0.00 3.24
886 929 1.665916 CTGCAGGACGTGTGTCTGG 60.666 63.158 5.57 0.00 44.83 3.86
896 939 0.607489 ATTCAGCACCACTGCAGGAC 60.607 55.000 19.93 2.06 46.97 3.85
899 942 2.223876 ACAAAATTCAGCACCACTGCAG 60.224 45.455 13.48 13.48 46.97 4.41
917 962 1.400142 CAGCAACGTGAAACCTGACAA 59.600 47.619 0.00 0.00 0.00 3.18
924 969 0.248866 CCCAACCAGCAACGTGAAAC 60.249 55.000 0.00 0.00 0.00 2.78
947 992 2.363018 CCTCTCGCCCTCACCTCA 60.363 66.667 0.00 0.00 0.00 3.86
957 1002 2.754658 TCCTCCCGAACCTCTCGC 60.755 66.667 0.00 0.00 46.71 5.03
968 1016 0.560688 ACCTCTGATCTCCTCCTCCC 59.439 60.000 0.00 0.00 0.00 4.30
971 1019 0.184933 CCGACCTCTGATCTCCTCCT 59.815 60.000 0.00 0.00 0.00 3.69
975 1023 0.106419 ACCTCCGACCTCTGATCTCC 60.106 60.000 0.00 0.00 0.00 3.71
989 1037 2.491022 CGACCCATCTCCGACCTCC 61.491 68.421 0.00 0.00 0.00 4.30
990 1038 3.121019 CGACCCATCTCCGACCTC 58.879 66.667 0.00 0.00 0.00 3.85
991 1039 3.148279 GCGACCCATCTCCGACCT 61.148 66.667 0.00 0.00 0.00 3.85
992 1040 4.570663 CGCGACCCATCTCCGACC 62.571 72.222 0.00 0.00 0.00 4.79
993 1041 4.570663 CCGCGACCCATCTCCGAC 62.571 72.222 8.23 0.00 0.00 4.79
1152 1200 2.606519 AACTGGTAGAGGCGGCCA 60.607 61.111 23.09 0.00 0.00 5.36
1193 1241 1.075226 CTGGGGGAGATCGGAAGGA 60.075 63.158 0.00 0.00 0.00 3.36
1195 1243 1.826024 CACTGGGGGAGATCGGAAG 59.174 63.158 0.00 0.00 0.00 3.46
1197 1245 2.764128 GCACTGGGGGAGATCGGA 60.764 66.667 0.00 0.00 0.00 4.55
1213 1271 1.134560 GAGGGATCGATATGGTACGGC 59.865 57.143 0.00 0.00 0.00 5.68
1231 1289 5.302823 ACCACAAAGAGAAAAGGAAATGGAG 59.697 40.000 0.00 0.00 0.00 3.86
1249 1307 0.462225 TCGACTCGGCAAAACCACAA 60.462 50.000 0.00 0.00 39.03 3.33
1252 1310 0.672401 GGATCGACTCGGCAAAACCA 60.672 55.000 0.00 0.00 39.03 3.67
1253 1311 0.391263 AGGATCGACTCGGCAAAACC 60.391 55.000 0.00 0.00 0.00 3.27
1254 1312 1.439679 AAGGATCGACTCGGCAAAAC 58.560 50.000 0.00 0.00 0.00 2.43
1263 1321 4.583871 AGAGCAAATCAAAAGGATCGACT 58.416 39.130 0.00 0.00 34.28 4.18
1293 1351 3.602062 GTCGCGTATGGACAAAATGTTTG 59.398 43.478 5.77 0.00 34.56 2.93
1299 1357 1.456544 GAACGTCGCGTATGGACAAAA 59.543 47.619 5.77 0.00 39.99 2.44
1342 1413 4.015406 TTCATGCACGGACGCCCT 62.015 61.111 0.00 0.00 0.00 5.19
1390 1461 2.301346 ACAGAACAGCAAACAAGAGGG 58.699 47.619 0.00 0.00 0.00 4.30
1394 1465 2.195922 GCCAACAGAACAGCAAACAAG 58.804 47.619 0.00 0.00 0.00 3.16
1397 1468 0.459489 TGGCCAACAGAACAGCAAAC 59.541 50.000 0.61 0.00 0.00 2.93
1409 1480 1.748493 TCTTTTGACACAGTGGCCAAC 59.252 47.619 7.24 1.26 0.00 3.77
1501 1573 5.378292 ACGCATGACATATACTCCTACTG 57.622 43.478 0.00 0.00 0.00 2.74
1506 1578 6.423905 ACAAACATACGCATGACATATACTCC 59.576 38.462 1.75 0.00 35.96 3.85
1507 1579 7.382488 AGACAAACATACGCATGACATATACTC 59.618 37.037 1.75 0.00 35.96 2.59
1509 1581 7.169140 TGAGACAAACATACGCATGACATATAC 59.831 37.037 1.75 0.00 35.96 1.47
1597 1672 3.055747 TGTGGTCAGGCGTACATCAAATA 60.056 43.478 0.00 0.00 0.00 1.40
1607 1682 1.192146 ATACAGGTGTGGTCAGGCGT 61.192 55.000 0.00 0.00 0.00 5.68
1663 1738 4.418392 GTGCAAATTAATCTCAGCAGGTG 58.582 43.478 0.00 0.00 32.03 4.00
1669 1744 6.643770 GCCATATTGGTGCAAATTAATCTCAG 59.356 38.462 0.00 0.00 40.46 3.35
1690 1765 1.855295 TTCACAAGGATGCATGCCAT 58.145 45.000 16.68 8.81 36.70 4.40
1701 1776 1.737793 GCCCGTATGAGTTTCACAAGG 59.262 52.381 0.00 0.00 0.00 3.61
1745 1828 6.042093 CCCAGACCATAAGACAAAGCTAGATA 59.958 42.308 0.00 0.00 0.00 1.98
1746 1829 5.163258 CCCAGACCATAAGACAAAGCTAGAT 60.163 44.000 0.00 0.00 0.00 1.98
1754 1837 6.199376 TCATACTACCCAGACCATAAGACAA 58.801 40.000 0.00 0.00 0.00 3.18
1764 1847 4.835615 AGTGGATCATCATACTACCCAGAC 59.164 45.833 0.00 0.00 0.00 3.51
1813 1896 8.189119 TGGGTCTGCAGAAAAGTATTTAAAAT 57.811 30.769 20.19 0.00 37.28 1.82
1819 1902 4.729868 ACTTGGGTCTGCAGAAAAGTATT 58.270 39.130 26.97 12.12 0.00 1.89
1869 1959 6.635030 AAAGGTGTCAAATTAGACTGAACC 57.365 37.500 0.00 0.00 39.27 3.62
2156 2250 8.190784 GGTACGAACCTAACATTAGCTAGTTTA 58.809 37.037 3.93 0.00 43.08 2.01
2157 2251 7.038048 GGTACGAACCTAACATTAGCTAGTTT 58.962 38.462 3.93 0.00 43.08 2.66
2158 2252 6.567959 GGTACGAACCTAACATTAGCTAGTT 58.432 40.000 4.06 4.06 43.08 2.24
2159 2253 6.141560 GGTACGAACCTAACATTAGCTAGT 57.858 41.667 0.00 0.00 43.08 2.57
2182 2276 2.376695 TTATGGGACGGAGGGAGTAG 57.623 55.000 0.00 0.00 0.00 2.57
2183 2277 2.090943 ACATTATGGGACGGAGGGAGTA 60.091 50.000 0.00 0.00 0.00 2.59
2185 2279 1.424638 ACATTATGGGACGGAGGGAG 58.575 55.000 0.00 0.00 0.00 4.30
2187 2281 2.969950 TCTTACATTATGGGACGGAGGG 59.030 50.000 0.00 0.00 0.00 4.30
2190 2284 3.649843 AGGTCTTACATTATGGGACGGA 58.350 45.455 0.00 0.00 0.00 4.69
2191 2285 4.417426 AAGGTCTTACATTATGGGACGG 57.583 45.455 0.00 0.00 0.00 4.79
2192 2286 6.753107 AAAAAGGTCTTACATTATGGGACG 57.247 37.500 0.00 0.00 0.00 4.79
2212 2306 9.902684 TCCCATAATATAAGACCGTGTTAAAAA 57.097 29.630 0.00 0.00 0.00 1.94
2214 2308 9.496873 CATCCCATAATATAAGACCGTGTTAAA 57.503 33.333 0.00 0.00 0.00 1.52
2215 2309 8.872134 TCATCCCATAATATAAGACCGTGTTAA 58.128 33.333 0.00 0.00 0.00 2.01
2216 2310 8.425237 TCATCCCATAATATAAGACCGTGTTA 57.575 34.615 0.00 0.00 0.00 2.41
2217 2311 7.311092 TCATCCCATAATATAAGACCGTGTT 57.689 36.000 0.00 0.00 0.00 3.32
2218 2312 6.928348 TCATCCCATAATATAAGACCGTGT 57.072 37.500 0.00 0.00 0.00 4.49
2219 2313 7.334421 CCTTTCATCCCATAATATAAGACCGTG 59.666 40.741 0.00 0.00 0.00 4.94
2220 2314 7.236847 TCCTTTCATCCCATAATATAAGACCGT 59.763 37.037 0.00 0.00 0.00 4.83
2221 2315 7.620880 TCCTTTCATCCCATAATATAAGACCG 58.379 38.462 0.00 0.00 0.00 4.79
2222 2316 8.606830 ACTCCTTTCATCCCATAATATAAGACC 58.393 37.037 0.00 0.00 0.00 3.85
2225 2319 9.587772 CGTACTCCTTTCATCCCATAATATAAG 57.412 37.037 0.00 0.00 0.00 1.73
2226 2320 8.038944 GCGTACTCCTTTCATCCCATAATATAA 58.961 37.037 0.00 0.00 0.00 0.98
2227 2321 7.179516 TGCGTACTCCTTTCATCCCATAATATA 59.820 37.037 0.00 0.00 0.00 0.86
2228 2322 6.013725 TGCGTACTCCTTTCATCCCATAATAT 60.014 38.462 0.00 0.00 0.00 1.28
2229 2323 5.305902 TGCGTACTCCTTTCATCCCATAATA 59.694 40.000 0.00 0.00 0.00 0.98
2230 2324 4.102524 TGCGTACTCCTTTCATCCCATAAT 59.897 41.667 0.00 0.00 0.00 1.28
2231 2325 3.452990 TGCGTACTCCTTTCATCCCATAA 59.547 43.478 0.00 0.00 0.00 1.90
2232 2326 3.035363 TGCGTACTCCTTTCATCCCATA 58.965 45.455 0.00 0.00 0.00 2.74
2233 2327 1.837439 TGCGTACTCCTTTCATCCCAT 59.163 47.619 0.00 0.00 0.00 4.00
2234 2328 1.271856 TGCGTACTCCTTTCATCCCA 58.728 50.000 0.00 0.00 0.00 4.37
2235 2329 2.396590 TTGCGTACTCCTTTCATCCC 57.603 50.000 0.00 0.00 0.00 3.85
2236 2330 6.619801 AATTATTGCGTACTCCTTTCATCC 57.380 37.500 0.00 0.00 0.00 3.51
2237 2331 9.651718 CTTAAATTATTGCGTACTCCTTTCATC 57.348 33.333 0.00 0.00 0.00 2.92
2238 2332 8.129211 GCTTAAATTATTGCGTACTCCTTTCAT 58.871 33.333 0.00 0.00 0.00 2.57
2239 2333 7.119992 TGCTTAAATTATTGCGTACTCCTTTCA 59.880 33.333 0.00 0.00 0.00 2.69
2240 2334 7.469260 TGCTTAAATTATTGCGTACTCCTTTC 58.531 34.615 0.00 0.00 0.00 2.62
2241 2335 7.385778 TGCTTAAATTATTGCGTACTCCTTT 57.614 32.000 0.00 0.00 0.00 3.11
2242 2336 6.458342 GCTGCTTAAATTATTGCGTACTCCTT 60.458 38.462 0.00 0.00 0.00 3.36
2243 2337 5.007724 GCTGCTTAAATTATTGCGTACTCCT 59.992 40.000 0.00 0.00 0.00 3.69
2244 2338 5.007724 AGCTGCTTAAATTATTGCGTACTCC 59.992 40.000 0.00 0.00 0.00 3.85
2245 2339 6.018669 AGAGCTGCTTAAATTATTGCGTACTC 60.019 38.462 2.53 0.00 0.00 2.59
2246 2340 5.817816 AGAGCTGCTTAAATTATTGCGTACT 59.182 36.000 2.53 0.00 0.00 2.73
2252 2346 8.854614 ACCCTATAGAGCTGCTTAAATTATTG 57.145 34.615 2.53 0.00 0.00 1.90
2256 2350 6.043243 TGCTACCCTATAGAGCTGCTTAAATT 59.957 38.462 2.53 0.00 37.12 1.82
2337 2431 9.023962 TCAGTGGCTTTATAATTTTGACAGATT 57.976 29.630 0.00 0.00 0.00 2.40
2368 2466 4.267690 AGCGCTTTTACAAACTTTTTGAGC 59.732 37.500 2.64 3.44 0.00 4.26
2381 2479 6.195244 CACATTTCATGTATCAGCGCTTTTAC 59.805 38.462 7.50 13.37 42.70 2.01
2387 2485 3.950087 TCACATTTCATGTATCAGCGC 57.050 42.857 0.00 0.00 42.70 5.92
2389 2487 5.953183 TGGTTTCACATTTCATGTATCAGC 58.047 37.500 0.00 0.00 42.70 4.26
2425 2523 5.221422 GGCCCTACAAAATATTAGCATGCAA 60.221 40.000 21.98 12.49 0.00 4.08
2474 2606 3.378112 CCACCAGTGGCATGTTTGTATAG 59.622 47.826 9.78 0.00 44.73 1.31
2539 2671 8.514330 AGAAGTACAGTTGTTAATTTTCACCA 57.486 30.769 0.00 0.00 0.00 4.17
2541 2673 9.434559 GTGAGAAGTACAGTTGTTAATTTTCAC 57.565 33.333 0.00 9.49 0.00 3.18
2542 2674 9.168451 TGTGAGAAGTACAGTTGTTAATTTTCA 57.832 29.630 0.00 0.00 0.00 2.69
2543 2675 9.651718 CTGTGAGAAGTACAGTTGTTAATTTTC 57.348 33.333 0.00 0.00 40.43 2.29
2574 2808 6.127897 GCCACTGTAAGAATGTTTATTGAGCT 60.128 38.462 0.00 0.00 37.43 4.09
2578 2812 8.677300 ACTATGCCACTGTAAGAATGTTTATTG 58.323 33.333 0.00 0.00 37.43 1.90
2581 2815 8.100791 AGAACTATGCCACTGTAAGAATGTTTA 58.899 33.333 0.00 0.00 37.43 2.01
2597 2831 6.584185 TTAAACTTTTGGGAGAACTATGCC 57.416 37.500 0.00 0.00 0.00 4.40
2660 2894 6.993902 ACGATGTACCTAAAAAGAACTTTCCA 59.006 34.615 0.21 0.00 31.45 3.53
2666 2900 7.384387 AGACTTGACGATGTACCTAAAAAGAAC 59.616 37.037 0.00 0.00 0.00 3.01
2669 2903 7.384115 TGAAGACTTGACGATGTACCTAAAAAG 59.616 37.037 0.00 0.00 0.00 2.27
2673 2907 5.475909 AGTGAAGACTTGACGATGTACCTAA 59.524 40.000 0.00 0.00 0.00 2.69
2674 2908 5.008331 AGTGAAGACTTGACGATGTACCTA 58.992 41.667 0.00 0.00 0.00 3.08
2675 2909 3.827302 AGTGAAGACTTGACGATGTACCT 59.173 43.478 0.00 0.00 0.00 3.08
2681 2915 6.071896 TCACAATCTAGTGAAGACTTGACGAT 60.072 38.462 0.00 0.00 44.92 3.73
2683 2917 5.461526 TCACAATCTAGTGAAGACTTGACG 58.538 41.667 0.00 0.00 44.92 4.35
2755 2989 9.944376 TGTTGTCTTAGTCTTATGAGCTAATTT 57.056 29.630 0.00 0.00 0.00 1.82
2808 3236 6.535508 GGTCTCTCGCATAATAAACTTTCTGT 59.464 38.462 0.00 0.00 0.00 3.41
2810 3238 6.879400 AGGTCTCTCGCATAATAAACTTTCT 58.121 36.000 0.00 0.00 0.00 2.52
2817 3245 6.582636 ACAATGAAGGTCTCTCGCATAATAA 58.417 36.000 0.00 0.00 0.00 1.40
2821 3249 3.181475 GGACAATGAAGGTCTCTCGCATA 60.181 47.826 0.00 0.00 35.61 3.14
2839 3267 8.956533 TGACAGAATTCGATAATTATTGGACA 57.043 30.769 11.99 0.76 35.41 4.02
2840 3268 9.817365 CATGACAGAATTCGATAATTATTGGAC 57.183 33.333 11.99 3.22 35.41 4.02
2841 3269 9.559732 ACATGACAGAATTCGATAATTATTGGA 57.440 29.630 11.99 4.61 35.41 3.53
2879 3307 4.308128 AGGGGGAGGGATTAGAAACTAAG 58.692 47.826 0.00 0.00 0.00 2.18
2895 3323 2.857998 GATTCACTGGGGGAGGGGGA 62.858 65.000 0.00 0.00 0.00 4.81
2897 3325 1.308216 AGATTCACTGGGGGAGGGG 60.308 63.158 0.00 0.00 0.00 4.79
2898 3326 0.621571 TCAGATTCACTGGGGGAGGG 60.622 60.000 0.00 0.00 45.76 4.30
2901 3329 5.044179 ACATAAATTCAGATTCACTGGGGGA 60.044 40.000 0.00 0.00 45.76 4.81
2902 3330 5.203528 ACATAAATTCAGATTCACTGGGGG 58.796 41.667 0.00 0.00 45.76 5.40
2922 3350 7.254658 GCAAGTACACGCATAGGTAAATAACAT 60.255 37.037 0.00 0.00 0.00 2.71
2934 3362 2.761559 AGTTGTGCAAGTACACGCATA 58.238 42.857 11.77 7.11 43.74 3.14
2938 3366 5.591643 AGATTAAGTTGTGCAAGTACACG 57.408 39.130 0.00 0.00 43.74 4.49
2950 3685 9.831737 ATGAGTTGAAAATTCGAGATTAAGTTG 57.168 29.630 0.00 0.00 34.99 3.16
3021 3759 2.768492 GGCAGCATCTTGGGAAGCG 61.768 63.158 0.00 0.00 40.59 4.68
3050 3788 0.749049 TCAGACCTGCATCTCATCGG 59.251 55.000 0.00 0.00 0.00 4.18
3136 3874 9.959721 TTCTCTGATAACCTGCTAGTTAAAAAT 57.040 29.630 3.73 0.00 35.90 1.82
3157 3895 8.343366 GTTCTACGAAGGAAAACAAATTTCTCT 58.657 33.333 0.00 0.00 45.57 3.10
3158 3896 8.126700 TGTTCTACGAAGGAAAACAAATTTCTC 58.873 33.333 0.00 0.00 45.57 2.87
3160 3898 8.623310 TTGTTCTACGAAGGAAAACAAATTTC 57.377 30.769 0.00 0.00 45.55 2.17
3162 3900 8.194769 ACATTGTTCTACGAAGGAAAACAAATT 58.805 29.630 3.44 0.00 41.54 1.82
3166 3904 7.876068 AGATACATTGTTCTACGAAGGAAAACA 59.124 33.333 0.00 0.00 0.00 2.83
3229 3980 9.942850 TGTATGACTGAATGTTTTATCTCTTCA 57.057 29.630 0.00 0.00 0.00 3.02
3267 4023 8.776470 TCATATAACGTACGTCATACAGAATGA 58.224 33.333 23.05 14.67 42.48 2.57
3268 4024 8.944212 TCATATAACGTACGTCATACAGAATG 57.056 34.615 23.05 12.58 46.00 2.67
3269 4025 9.608617 CTTCATATAACGTACGTCATACAGAAT 57.391 33.333 23.05 4.95 32.79 2.40
3270 4026 7.588854 GCTTCATATAACGTACGTCATACAGAA 59.411 37.037 23.05 20.61 32.79 3.02
3272 4028 6.854381 TGCTTCATATAACGTACGTCATACAG 59.146 38.462 23.05 14.15 32.79 2.74
3273 4029 6.727215 TGCTTCATATAACGTACGTCATACA 58.273 36.000 23.05 7.97 32.79 2.29
3274 4030 7.792383 ATGCTTCATATAACGTACGTCATAC 57.208 36.000 23.05 5.32 0.00 2.39
3275 4031 7.148869 GCAATGCTTCATATAACGTACGTCATA 60.149 37.037 23.05 17.93 0.00 2.15
3276 4032 6.346598 GCAATGCTTCATATAACGTACGTCAT 60.347 38.462 23.05 16.02 0.00 3.06
3277 4033 5.051307 GCAATGCTTCATATAACGTACGTCA 60.051 40.000 23.05 7.80 0.00 4.35
3278 4034 5.363517 GCAATGCTTCATATAACGTACGTC 58.636 41.667 23.05 6.18 0.00 4.34
3279 4035 4.210537 GGCAATGCTTCATATAACGTACGT 59.789 41.667 16.72 16.72 0.00 3.57
3280 4036 4.447724 AGGCAATGCTTCATATAACGTACG 59.552 41.667 15.01 15.01 0.00 3.67
3281 4037 5.924475 AGGCAATGCTTCATATAACGTAC 57.076 39.130 4.82 0.00 0.00 3.67
3282 4038 7.062956 CGAATAGGCAATGCTTCATATAACGTA 59.937 37.037 4.82 0.00 0.00 3.57
3283 4039 6.128553 CGAATAGGCAATGCTTCATATAACGT 60.129 38.462 4.82 0.00 0.00 3.99
3284 4040 6.128553 ACGAATAGGCAATGCTTCATATAACG 60.129 38.462 4.82 10.25 0.00 3.18
3292 4048 5.821204 ACATTTACGAATAGGCAATGCTTC 58.179 37.500 4.82 0.05 30.67 3.86
3299 4055 7.116075 ACTAGGTAACATTTACGAATAGGCA 57.884 36.000 0.00 0.00 41.41 4.75
3300 4056 7.707893 TGAACTAGGTAACATTTACGAATAGGC 59.292 37.037 0.00 0.00 41.41 3.93
3301 4057 9.028185 GTGAACTAGGTAACATTTACGAATAGG 57.972 37.037 0.00 0.00 41.41 2.57
3307 4063 7.329962 TCATGTGTGAACTAGGTAACATTTACG 59.670 37.037 0.00 0.00 41.41 3.18
3328 4084 8.680903 CAGAGAAATACCTTTTAGCAATCATGT 58.319 33.333 0.00 0.00 0.00 3.21
3343 4099 4.636206 CACCTTTACCAGCAGAGAAATACC 59.364 45.833 0.00 0.00 0.00 2.73
3360 4116 8.851541 TCTAAACACGGAAATATAACACCTTT 57.148 30.769 0.00 0.00 0.00 3.11
3361 4117 8.724229 GTTCTAAACACGGAAATATAACACCTT 58.276 33.333 0.00 0.00 0.00 3.50
3363 4119 8.031848 TGTTCTAAACACGGAAATATAACACC 57.968 34.615 0.00 0.00 36.25 4.16
3364 4120 9.485591 CATGTTCTAAACACGGAAATATAACAC 57.514 33.333 0.00 0.00 45.50 3.32
3383 4139 4.586001 ACAAGCAACAGAAATCCATGTTCT 59.414 37.500 0.00 0.00 37.54 3.01
3396 4163 4.034858 CACTGCCTATATGACAAGCAACAG 59.965 45.833 0.00 0.00 32.14 3.16
3565 4337 3.926616 TGCTCTAGCTGTACTTTCCAAC 58.073 45.455 0.00 0.00 42.66 3.77
3570 4342 3.274288 GCCAATGCTCTAGCTGTACTTT 58.726 45.455 0.00 0.00 42.66 2.66
3578 4350 1.099879 CACTGGGCCAATGCTCTAGC 61.100 60.000 8.04 0.00 39.40 3.42
3611 4385 0.574922 TACGTGAATTATGCTGCGCG 59.425 50.000 0.00 0.00 39.83 6.86
3625 4399 3.002965 TCACATAGATAGCCACGTACGTG 59.997 47.826 35.57 35.57 45.02 4.49
3626 4400 3.208594 TCACATAGATAGCCACGTACGT 58.791 45.455 16.72 16.72 0.00 3.57
3627 4401 3.891056 TCACATAGATAGCCACGTACG 57.109 47.619 15.01 15.01 0.00 3.67
3654 4428 0.108138 AGTGCCCAGTTACTCGATGC 60.108 55.000 0.00 0.00 0.00 3.91
3663 4437 2.121963 TCTCCCCAGTGCCCAGTT 60.122 61.111 0.00 0.00 0.00 3.16
3670 4444 2.564947 GCAGATATAGGTCTCCCCAGTG 59.435 54.545 0.00 0.00 34.66 3.66
3691 4465 3.002656 AGCGATAATTCAAGGAACATGCG 59.997 43.478 0.00 0.00 0.00 4.73
3692 4466 4.558538 AGCGATAATTCAAGGAACATGC 57.441 40.909 0.00 0.00 0.00 4.06
3699 4487 7.017645 GCATGTACATTAGCGATAATTCAAGG 58.982 38.462 5.37 0.00 0.00 3.61
3701 4489 7.489574 TGCATGTACATTAGCGATAATTCAA 57.510 32.000 5.37 0.00 0.00 2.69
3702 4490 7.671495 ATGCATGTACATTAGCGATAATTCA 57.329 32.000 5.37 4.44 0.00 2.57
3703 4491 8.955061 AAATGCATGTACATTAGCGATAATTC 57.045 30.769 5.37 0.00 39.32 2.17
3704 4492 9.184062 CAAAATGCATGTACATTAGCGATAATT 57.816 29.630 5.37 1.23 39.32 1.40
3705 4493 8.352201 ACAAAATGCATGTACATTAGCGATAAT 58.648 29.630 5.37 0.00 39.32 1.28
3706 4494 7.643371 CACAAAATGCATGTACATTAGCGATAA 59.357 33.333 5.37 0.00 39.32 1.75
3707 4495 7.131565 CACAAAATGCATGTACATTAGCGATA 58.868 34.615 5.37 0.00 39.32 2.92
3708 4496 5.972973 CACAAAATGCATGTACATTAGCGAT 59.027 36.000 5.37 2.13 39.32 4.58
3709 4497 5.331098 CACAAAATGCATGTACATTAGCGA 58.669 37.500 5.37 0.00 39.32 4.93
3710 4498 4.500117 CCACAAAATGCATGTACATTAGCG 59.500 41.667 5.37 0.00 39.32 4.26
3711 4499 5.410067 ACCACAAAATGCATGTACATTAGC 58.590 37.500 5.37 8.43 39.32 3.09
3712 4500 6.310956 CCAACCACAAAATGCATGTACATTAG 59.689 38.462 5.37 0.00 39.32 1.73
3713 4501 6.162079 CCAACCACAAAATGCATGTACATTA 58.838 36.000 5.37 0.00 39.32 1.90
3714 4502 4.996122 CCAACCACAAAATGCATGTACATT 59.004 37.500 5.37 0.00 42.01 2.71
3715 4503 4.040217 ACCAACCACAAAATGCATGTACAT 59.960 37.500 1.41 1.41 0.00 2.29
3716 4504 3.386078 ACCAACCACAAAATGCATGTACA 59.614 39.130 0.00 0.00 0.00 2.90
3717 4505 3.988819 ACCAACCACAAAATGCATGTAC 58.011 40.909 0.00 0.00 0.00 2.90
3718 4506 4.679373 AACCAACCACAAAATGCATGTA 57.321 36.364 0.00 0.00 0.00 2.29
3719 4507 3.557228 AACCAACCACAAAATGCATGT 57.443 38.095 0.00 0.00 0.00 3.21
3720 4508 6.873076 AGTTATAACCAACCACAAAATGCATG 59.127 34.615 12.05 0.00 0.00 4.06
3721 4509 7.003402 AGTTATAACCAACCACAAAATGCAT 57.997 32.000 12.05 0.00 0.00 3.96
3722 4510 6.412362 AGTTATAACCAACCACAAAATGCA 57.588 33.333 12.05 0.00 0.00 3.96
3723 4511 8.996024 ATAAGTTATAACCAACCACAAAATGC 57.004 30.769 12.05 0.00 0.00 3.56
3744 4532 9.088512 CAACCAAGCTGTTAGTCTACTTATAAG 57.911 37.037 11.05 11.05 0.00 1.73
3746 4534 7.553334 CCAACCAAGCTGTTAGTCTACTTATA 58.447 38.462 0.00 0.00 0.00 0.98
3747 4535 6.407202 CCAACCAAGCTGTTAGTCTACTTAT 58.593 40.000 0.00 0.00 0.00 1.73
3748 4536 5.790593 CCAACCAAGCTGTTAGTCTACTTA 58.209 41.667 0.00 0.00 0.00 2.24
3749 4537 4.642429 CCAACCAAGCTGTTAGTCTACTT 58.358 43.478 0.00 0.00 0.00 2.24
3750 4538 3.557264 GCCAACCAAGCTGTTAGTCTACT 60.557 47.826 0.00 0.00 0.00 2.57
3751 4539 2.742589 GCCAACCAAGCTGTTAGTCTAC 59.257 50.000 0.00 0.00 0.00 2.59
3775 4563 3.534554 TCTGCTACAATACTGCATGTGG 58.465 45.455 0.89 0.00 36.07 4.17
3776 4564 5.107182 GCTATCTGCTACAATACTGCATGTG 60.107 44.000 0.89 0.00 38.95 3.21
3777 4565 4.993584 GCTATCTGCTACAATACTGCATGT 59.006 41.667 0.00 0.00 38.95 3.21
3931 4834 3.515562 TGAACATTTTACCCCATGCCTT 58.484 40.909 0.00 0.00 0.00 4.35
3933 4836 3.971245 TTGAACATTTTACCCCATGCC 57.029 42.857 0.00 0.00 0.00 4.40
3975 4879 2.596904 TGAAGAAGGCGTACCATAGC 57.403 50.000 0.00 0.00 39.06 2.97
3976 4880 3.181465 ACCATGAAGAAGGCGTACCATAG 60.181 47.826 0.00 0.00 39.06 2.23
3977 4881 2.769663 ACCATGAAGAAGGCGTACCATA 59.230 45.455 0.00 0.00 39.06 2.74
4054 4959 9.778741 ATAAATTCTCGCATGAATAGTAAAGGA 57.221 29.630 0.00 0.00 35.82 3.36
4085 4990 5.019470 ACTCTCTGTGTGTGAATCCTCATA 58.981 41.667 0.00 0.00 33.05 2.15
4089 4994 3.805108 GCAACTCTCTGTGTGTGAATCCT 60.805 47.826 0.00 0.00 0.00 3.24
4100 5005 5.683876 ATTACATACTGGCAACTCTCTGT 57.316 39.130 0.00 0.00 37.61 3.41
4101 5006 6.992063 AAATTACATACTGGCAACTCTCTG 57.008 37.500 0.00 0.00 37.61 3.35
4106 5011 8.823220 ATCCTAAAAATTACATACTGGCAACT 57.177 30.769 0.00 0.00 37.61 3.16
4170 5076 9.162764 TGCCATCTTCTAAAGAAATTAGTACAC 57.837 33.333 0.00 0.00 41.63 2.90
4178 5084 5.420104 CCCACTTGCCATCTTCTAAAGAAAT 59.580 40.000 0.00 0.00 41.63 2.17
4218 5124 6.072508 TGTTGAGTTCATATGGTTCTTGCTTC 60.073 38.462 2.13 0.00 0.00 3.86
4225 5131 5.048782 TGCTTGTGTTGAGTTCATATGGTTC 60.049 40.000 2.13 0.00 0.00 3.62
4226 5132 4.826733 TGCTTGTGTTGAGTTCATATGGTT 59.173 37.500 2.13 0.00 0.00 3.67
4255 5382 1.016627 TGCGCTTTGCTATGGCTTAG 58.983 50.000 9.73 3.17 46.63 2.18
4259 5430 0.388391 TGTTTGCGCTTTGCTATGGC 60.388 50.000 9.73 0.00 46.63 4.40
4269 5440 2.618241 TCAATGTTCTCTTGTTTGCGCT 59.382 40.909 9.73 0.00 0.00 5.92
4307 5479 6.365518 TCATCTACACTACGATCTAGCGTTAG 59.634 42.308 0.00 0.00 42.71 2.34
4319 5491 6.035005 CACTTGGATTGTTCATCTACACTACG 59.965 42.308 0.00 0.00 31.67 3.51
4320 5492 6.183360 GCACTTGGATTGTTCATCTACACTAC 60.183 42.308 0.00 0.00 31.67 2.73
4322 5494 4.697352 GCACTTGGATTGTTCATCTACACT 59.303 41.667 0.00 0.00 31.67 3.55
4334 5507 3.425359 CGCAACTTCTAGCACTTGGATTG 60.425 47.826 0.00 0.00 0.00 2.67
4352 5525 4.158579 AGTCATATTGTCACTCTCTCGCAA 59.841 41.667 0.00 0.00 0.00 4.85
4355 5528 4.034626 ACGAGTCATATTGTCACTCTCTCG 59.965 45.833 0.00 0.00 44.67 4.04
4379 5552 7.388776 CCTTTCTACACAACATCAAGAGATCAA 59.611 37.037 0.00 0.00 30.20 2.57
4409 5583 0.804989 GAAGATGAACCCAACTGCGG 59.195 55.000 0.00 0.00 0.00 5.69
4456 5639 5.812286 AGCATGCCATAATCATGACTATGA 58.188 37.500 22.50 6.85 46.67 2.15
4469 5652 4.466827 AGATTTGACATGAGCATGCCATA 58.533 39.130 15.66 0.65 42.39 2.74
4474 5657 7.023197 TGTCATAAGATTTGACATGAGCATG 57.977 36.000 8.82 8.82 46.31 4.06
4496 5679 8.947115 GCAGAAGACCTTTGTTTTACTATATGT 58.053 33.333 0.00 0.00 0.00 2.29
4497 5680 8.116753 CGCAGAAGACCTTTGTTTTACTATATG 58.883 37.037 0.00 0.00 0.00 1.78
4498 5681 7.201617 GCGCAGAAGACCTTTGTTTTACTATAT 60.202 37.037 0.30 0.00 0.00 0.86
4499 5682 6.091713 GCGCAGAAGACCTTTGTTTTACTATA 59.908 38.462 0.30 0.00 0.00 1.31
4500 5683 5.106673 GCGCAGAAGACCTTTGTTTTACTAT 60.107 40.000 0.30 0.00 0.00 2.12
4501 5684 4.212636 GCGCAGAAGACCTTTGTTTTACTA 59.787 41.667 0.30 0.00 0.00 1.82
4502 5685 3.003378 GCGCAGAAGACCTTTGTTTTACT 59.997 43.478 0.30 0.00 0.00 2.24
4503 5686 3.242936 TGCGCAGAAGACCTTTGTTTTAC 60.243 43.478 5.66 0.00 0.00 2.01
4504 5687 2.946329 TGCGCAGAAGACCTTTGTTTTA 59.054 40.909 5.66 0.00 0.00 1.52
4515 5698 2.760634 TCCTTATTGTGCGCAGAAGA 57.239 45.000 24.81 18.39 0.00 2.87
4522 5705 8.584600 GTTATACTTCGATATCCTTATTGTGCG 58.415 37.037 0.00 0.00 0.00 5.34
4546 5729 3.862845 GCAATTCGTGTGAACCTTTTGTT 59.137 39.130 0.00 0.00 40.81 2.83
4554 5737 3.585862 TCCTAGAGCAATTCGTGTGAAC 58.414 45.455 0.00 0.00 36.81 3.18
4560 5743 5.940470 ACTGAAAAATCCTAGAGCAATTCGT 59.060 36.000 0.00 0.00 0.00 3.85
4561 5744 6.092670 TCACTGAAAAATCCTAGAGCAATTCG 59.907 38.462 0.00 0.00 0.00 3.34
4567 5750 5.065731 CCACATCACTGAAAAATCCTAGAGC 59.934 44.000 0.00 0.00 0.00 4.09
4568 5751 6.176183 ACCACATCACTGAAAAATCCTAGAG 58.824 40.000 0.00 0.00 0.00 2.43
4569 5752 6.126863 ACCACATCACTGAAAAATCCTAGA 57.873 37.500 0.00 0.00 0.00 2.43
4574 5757 5.705441 TGGAGTACCACATCACTGAAAAATC 59.295 40.000 0.00 0.00 41.77 2.17
4582 5765 4.706842 AAACTTGGAGTACCACATCACT 57.293 40.909 0.00 0.00 46.80 3.41
4650 5835 8.981659 TGGAGATGATTATGACTGAAGAGTTAA 58.018 33.333 0.00 0.00 30.16 2.01
4659 5844 5.922053 TCACCTTGGAGATGATTATGACTG 58.078 41.667 0.00 0.00 0.00 3.51
4670 5855 4.536090 TGGTCAAAGTATCACCTTGGAGAT 59.464 41.667 5.06 5.06 0.00 2.75
4701 5892 6.386654 AGTTCAGTCGCAAAAAGAAGAAAAA 58.613 32.000 0.00 0.00 0.00 1.94
4706 5897 6.228273 TGATAGTTCAGTCGCAAAAAGAAG 57.772 37.500 0.00 0.00 0.00 2.85
4777 5968 7.800155 TGAATTATCGCAGAACATAATTCCA 57.200 32.000 16.32 7.32 44.46 3.53
4789 5980 7.854534 TGACACAGATATTTGAATTATCGCAG 58.145 34.615 0.00 0.95 0.00 5.18
4790 5981 7.784633 TGACACAGATATTTGAATTATCGCA 57.215 32.000 0.00 0.00 0.00 5.10
4843 6034 7.441760 AGCAAGCACTCTTAATCTGATTATCAG 59.558 37.037 15.53 15.53 45.59 2.90
4848 6039 5.251764 ACAGCAAGCACTCTTAATCTGATT 58.748 37.500 8.14 8.14 32.52 2.57
4879 6070 9.817809 GAGTCACATAGTATAGGTCATTTCAAA 57.182 33.333 0.00 0.00 30.38 2.69
4880 6071 8.977412 TGAGTCACATAGTATAGGTCATTTCAA 58.023 33.333 0.00 0.00 30.38 2.69
4881 6072 8.533569 TGAGTCACATAGTATAGGTCATTTCA 57.466 34.615 0.00 0.00 30.38 2.69
4885 6076 9.981460 TCATATGAGTCACATAGTATAGGTCAT 57.019 33.333 0.00 0.00 43.48 3.06
4891 6082 9.588096 ACCACTTCATATGAGTCACATAGTATA 57.412 33.333 5.39 0.00 43.48 1.47
4892 6083 8.484214 ACCACTTCATATGAGTCACATAGTAT 57.516 34.615 5.39 0.00 43.48 2.12
4907 6125 5.269991 ACAAGCTAGGAGTACCACTTCATA 58.730 41.667 0.00 0.00 38.94 2.15
4931 6149 4.884668 TCCAGGACGACTTTGTAAGATT 57.115 40.909 0.00 0.00 0.00 2.40
4935 6153 6.469410 ACATAAATCCAGGACGACTTTGTAA 58.531 36.000 0.00 0.00 0.00 2.41
4944 6162 9.855021 AAAAATTCTAAACATAAATCCAGGACG 57.145 29.630 0.00 0.00 0.00 4.79
4976 6195 7.490657 ACCTACATTATGACACAAGAGGTAA 57.509 36.000 0.00 0.00 33.05 2.85
4986 6205 5.626809 GCTGGAGACAACCTACATTATGACA 60.627 44.000 0.00 0.00 42.06 3.58
4987 6206 4.811557 GCTGGAGACAACCTACATTATGAC 59.188 45.833 0.00 0.00 42.06 3.06
4988 6207 4.469586 TGCTGGAGACAACCTACATTATGA 59.530 41.667 0.00 0.00 42.06 2.15
5006 6227 2.412870 TGTCAAAGTATCACGTGCTGG 58.587 47.619 11.67 0.00 0.00 4.85
5008 6229 4.314961 TGATTGTCAAAGTATCACGTGCT 58.685 39.130 11.67 3.26 0.00 4.40
5009 6230 4.152402 ACTGATTGTCAAAGTATCACGTGC 59.848 41.667 11.67 0.00 0.00 5.34
5010 6231 5.845985 ACTGATTGTCAAAGTATCACGTG 57.154 39.130 9.94 9.94 0.00 4.49
5026 6247 7.342799 ACCAGCATATTGTTATGGAAACTGATT 59.657 33.333 0.00 0.00 36.49 2.57
5051 6272 9.691362 ATAAAGTGTACCATGTTTCATTTGAAC 57.309 29.630 0.00 0.00 33.13 3.18
5090 6312 5.225538 CGTGAAACAAAATTTACGTTGTCGT 59.774 36.000 0.00 0.00 45.66 4.34
5106 6328 8.576936 AAAAGAAACTTACAAAACGTGAAACA 57.423 26.923 0.00 0.00 35.74 2.83
5136 6360 7.304735 CGTCAAACATTCTTGGTTTCATCATA 58.695 34.615 0.00 0.00 36.38 2.15
5147 6371 3.961477 TGTGTCCGTCAAACATTCTTG 57.039 42.857 0.00 0.00 0.00 3.02
5150 6378 3.963383 AGTTGTGTCCGTCAAACATTC 57.037 42.857 0.00 0.00 0.00 2.67
5159 6387 3.020984 ACAATTCCAAAGTTGTGTCCGT 58.979 40.909 0.00 0.00 37.19 4.69
5160 6388 3.550030 GGACAATTCCAAAGTTGTGTCCG 60.550 47.826 12.92 0.00 43.93 4.79
5169 6397 8.110860 AGTAACATTGTAGGACAATTCCAAAG 57.889 34.615 2.09 0.00 45.80 2.77
5191 6421 9.624697 GCAAAAATCAAATACTTCATGTGAGTA 57.375 29.630 12.01 12.01 34.24 2.59
5197 6427 6.034898 GTCCCGCAAAAATCAAATACTTCATG 59.965 38.462 0.00 0.00 0.00 3.07
5213 6443 0.755686 ATGCCTTTTTGTCCCGCAAA 59.244 45.000 0.00 0.00 44.52 3.68
5215 6445 0.755686 AAATGCCTTTTTGTCCCGCA 59.244 45.000 0.00 0.00 0.00 5.69
5217 6447 3.727726 AGAAAAATGCCTTTTTGTCCCG 58.272 40.909 15.87 0.00 43.02 5.14
5219 6449 6.483307 AGCTTAAGAAAAATGCCTTTTTGTCC 59.517 34.615 15.87 3.69 43.02 4.02
5220 6450 7.482654 AGCTTAAGAAAAATGCCTTTTTGTC 57.517 32.000 15.87 4.37 43.02 3.18
5254 6484 4.067192 AGAAAAATGCCATTTTGTCCTGC 58.933 39.130 15.69 3.02 41.30 4.85
5255 6485 7.442062 ACTTAAGAAAAATGCCATTTTGTCCTG 59.558 33.333 15.69 7.94 41.30 3.86
5256 6486 7.508687 ACTTAAGAAAAATGCCATTTTGTCCT 58.491 30.769 15.69 10.50 41.30 3.85
5280 6510 7.382898 TGGGGAAAATGCTAAATCAAGTAAAC 58.617 34.615 0.00 0.00 0.00 2.01
5319 6549 6.868864 CAGTTAGTGTATTCTGCAGTTAGTGT 59.131 38.462 14.67 0.00 0.00 3.55
5320 6550 7.283254 CAGTTAGTGTATTCTGCAGTTAGTG 57.717 40.000 14.67 0.00 0.00 2.74
5329 6559 6.425114 AGTTGTTCTGCAGTTAGTGTATTCTG 59.575 38.462 14.67 0.00 0.00 3.02
5330 6560 6.525629 AGTTGTTCTGCAGTTAGTGTATTCT 58.474 36.000 14.67 0.00 0.00 2.40
5331 6561 6.787085 AGTTGTTCTGCAGTTAGTGTATTC 57.213 37.500 14.67 0.00 0.00 1.75
5332 6562 8.314751 AGATAGTTGTTCTGCAGTTAGTGTATT 58.685 33.333 14.67 0.00 0.00 1.89
5333 6563 7.761704 CAGATAGTTGTTCTGCAGTTAGTGTAT 59.238 37.037 14.67 5.90 34.68 2.29
5378 6608 4.034742 GCGTTGTAAAACCTCAACTCTTGA 59.965 41.667 0.00 0.00 40.88 3.02
5444 6674 4.013728 TGCGGTAACCTGCTGAAATTAAT 58.986 39.130 6.03 0.00 0.00 1.40
5445 6675 3.413327 TGCGGTAACCTGCTGAAATTAA 58.587 40.909 6.03 0.00 0.00 1.40
5446 6676 3.060736 TGCGGTAACCTGCTGAAATTA 57.939 42.857 6.03 0.00 0.00 1.40
5447 6677 1.904287 TGCGGTAACCTGCTGAAATT 58.096 45.000 6.03 0.00 0.00 1.82
5448 6678 1.539827 GTTGCGGTAACCTGCTGAAAT 59.460 47.619 0.00 0.00 33.01 2.17
5449 6679 0.948678 GTTGCGGTAACCTGCTGAAA 59.051 50.000 0.00 0.00 33.01 2.69
5452 6682 0.881118 AATGTTGCGGTAACCTGCTG 59.119 50.000 6.50 0.00 38.55 4.41
5674 7005 4.322080 TGCTCGATAAGACGAATGGATT 57.678 40.909 0.00 0.00 41.67 3.01
5677 7008 2.216488 CGTTGCTCGATAAGACGAATGG 59.784 50.000 0.00 0.00 41.67 3.16
5678 7009 2.346741 GCGTTGCTCGATAAGACGAATG 60.347 50.000 12.79 0.00 41.67 2.67
5679 7010 1.852895 GCGTTGCTCGATAAGACGAAT 59.147 47.619 12.79 0.00 41.67 3.34
5680 7011 1.135489 AGCGTTGCTCGATAAGACGAA 60.135 47.619 12.79 0.00 41.67 3.85
5682 7013 1.007011 CAAGCGTTGCTCGATAAGACG 60.007 52.381 6.11 6.45 38.25 4.18
5683 7014 2.703190 CAAGCGTTGCTCGATAAGAC 57.297 50.000 6.11 0.00 38.25 3.01
5726 7059 5.354234 GTCTGTGGTACAGGTTAAATCATGG 59.646 44.000 8.91 0.00 45.94 3.66
5732 7065 5.129815 ACTTGAGTCTGTGGTACAGGTTAAA 59.870 40.000 8.91 0.30 45.94 1.52
5735 7068 3.039011 ACTTGAGTCTGTGGTACAGGTT 58.961 45.455 8.91 0.00 45.94 3.50
5794 7129 9.476202 AACAGAAATGGAAAGTATTTTTAGTGC 57.524 29.630 0.00 0.00 39.27 4.40
5797 7132 9.696917 AGCAACAGAAATGGAAAGTATTTTTAG 57.303 29.630 0.00 0.00 39.27 1.85
5843 7183 2.472695 TGTGCTTGAAGCTACGGAAT 57.527 45.000 18.94 0.00 42.97 3.01
5888 7228 2.295349 CAGGGTCATATTTGCATCCTGC 59.705 50.000 0.00 0.00 45.29 4.85
5900 7240 6.843752 TGTTACCTTTCTTTTCAGGGTCATA 58.156 36.000 0.00 0.00 34.02 2.15
6005 7345 1.815003 GGCCCAAGTGAAATGAGACAG 59.185 52.381 0.00 0.00 0.00 3.51
6053 7393 0.103208 CTACTAGTGGGCTTGCCGAG 59.897 60.000 5.39 3.23 0.00 4.63
6056 7396 2.500504 ACTAACTACTAGTGGGCTTGCC 59.499 50.000 11.30 2.49 39.52 4.52
6057 7397 3.889520 ACTAACTACTAGTGGGCTTGC 57.110 47.619 11.30 0.00 39.52 4.01
6067 7407 5.433051 TCCCCTGCCTACTAACTAACTACTA 59.567 44.000 0.00 0.00 0.00 1.82
6123 7465 0.847373 TTGGTGGTACCTGAAAGCCA 59.153 50.000 14.36 8.81 39.58 4.75
6161 7503 3.119352 TGCAGTGCACAAACACACATAAA 60.119 39.130 21.04 0.00 43.23 1.40
6239 7587 2.270352 TGGATGAAGCCGTTTTCAGT 57.730 45.000 5.30 0.00 40.16 3.41
6347 7695 3.125573 ACATCTGCTGCTGCTGCG 61.126 61.111 23.38 18.17 43.34 5.18
6348 7696 2.485582 CACATCTGCTGCTGCTGC 59.514 61.111 22.51 22.51 40.48 5.25
6349 7697 3.052620 GCCACATCTGCTGCTGCTG 62.053 63.158 17.00 15.94 40.48 4.41
6433 7781 1.596477 GCTGCAGGGAAGGATAGCG 60.596 63.158 17.12 0.00 0.00 4.26
6444 7792 0.322975 AGTCTTACACTGGCTGCAGG 59.677 55.000 17.12 0.73 32.26 4.85
6503 7857 3.119291 CGGTGATCATTAGTCTCTGTGC 58.881 50.000 0.00 0.00 0.00 4.57
6525 7879 2.329379 GAAATCTGCAGAGACGAACGT 58.671 47.619 22.96 0.00 0.00 3.99
6784 8141 9.138596 ACAAACCCTGTACACATTACTTAAAAT 57.861 29.630 0.00 0.00 36.10 1.82
6877 8234 4.462483 ACGCTGTTGTAAATCAAATCCCAT 59.538 37.500 0.00 0.00 37.81 4.00
6909 8266 0.250424 TGCCATACATGCATCGGGAG 60.250 55.000 0.00 0.00 32.85 4.30
6974 8336 8.457238 AAAATAGAAAGAGAGCTCACTTTGTT 57.543 30.769 34.38 25.28 37.00 2.83
7020 8382 2.158559 CCCGACATGGTCAACATTTGA 58.841 47.619 0.00 0.00 37.84 2.69
7037 8399 2.477825 CTTGCAGATGACATCTACCCG 58.522 52.381 17.54 6.87 37.58 5.28
7047 8409 0.253044 GGCCACTACCTTGCAGATGA 59.747 55.000 0.00 0.00 0.00 2.92
7075 8437 2.194271 GATGCCTCGTAAAAGGTCTCG 58.806 52.381 0.00 0.00 38.79 4.04
7090 8452 2.225467 GGCTCCAATAGACTTGATGCC 58.775 52.381 0.00 0.00 33.35 4.40
7134 8496 5.422012 TCTGTTGTAGTATTGGCTGATCTGA 59.578 40.000 3.42 0.00 0.00 3.27
7424 9811 1.194781 TCCACAGAAGGAGTCCAGCC 61.195 60.000 12.86 0.00 32.77 4.85
7524 9914 2.223829 CGAGGGCGATCTGTCTTGTATT 60.224 50.000 0.00 0.00 40.82 1.89
7531 9921 2.167861 GCAACGAGGGCGATCTGTC 61.168 63.158 0.00 0.00 41.64 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.