AutoCloner

Multiple sequence alignment - TraesCS5A01G391000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G391000	chr5A	100.000	5176	0	0	1	5176	586154428	586149253	0.000000e+00	9559.0
1	TraesCS5A01G391000	chr5D	94.916	2852	106	21	2347	5176	465721675	465718841	0.000000e+00	4427.0
2	TraesCS5A01G391000	chr5D	90.140	1714	102	38	468	2149	465723600	465721922	0.000000e+00	2167.0
3	TraesCS5A01G391000	chr5D	97.887	142	3	0	2133	2274	465721909	465721768	4.000000e-61	246.0
4	TraesCS5A01G391000	chr5D	89.130	184	19	1	4533	4715	399222773	399222956	1.450000e-55	228.0
5	TraesCS5A01G391000	chr5B	93.988	2911	106	20	2333	5176	572954096	572951188	0.000000e+00	4342.0
6	TraesCS5A01G391000	chr5B	89.044	1433	75	38	573	1960	572955871	572954476	0.000000e+00	1701.0
7	TraesCS5A01G391000	chr5B	87.778	270	12	11	2022	2273	572954446	572954180	3.920000e-76	296.0
8	TraesCS5A01G391000	chr5B	95.745	47	2	0	497	543	572955913	572955867	5.560000e-10	76.8
9	TraesCS5A01G391000	chr6B	98.504	468	7	0	1	468	432271863	432272330	0.000000e+00	826.0
10	TraesCS5A01G391000	chr6B	98.287	467	8	0	1	467	708715626	708715160	0.000000e+00	819.0
11	TraesCS5A01G391000	chrUn	98.291	468	8	0	1	468	189212445	189212912	0.000000e+00	821.0
12	TraesCS5A01G391000	chr3B	98.291	468	8	0	1	468	727418254	727418721	0.000000e+00	821.0
13	TraesCS5A01G391000	chr7B	98.287	467	8	0	1	467	504238254	504237788	0.000000e+00	819.0
14	TraesCS5A01G391000	chr7B	98.077	468	9	0	1	468	677756414	677755947	0.000000e+00	815.0
15	TraesCS5A01G391000	chr7A	98.287	467	8	0	1	467	122750379	122750845	0.000000e+00	819.0
16	TraesCS5A01G391000	chr7A	98.287	467	8	0	1	467	621503498	621503964	0.000000e+00	819.0
17	TraesCS5A01G391000	chr2B	98.081	469	9	0	1	469	88924371	88924839	0.000000e+00	817.0
18	TraesCS5A01G391000	chr2B	78.226	124	27	0	3337	3460	660678062	660678185	4.300000e-11	80.5
19	TraesCS5A01G391000	chr2A	79.839	124	25	0	3337	3460	694633075	694633198	1.980000e-14	91.6
20	TraesCS5A01G391000	chr2D	77.419	124	28	0	3337	3460	554477082	554477205	2.000000e-09	75.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G391000	chr5A	586149253	586154428	5175	True	9559.00	9559	100.000000	1	5176	1	chr5A.!!$R1	5175
1	TraesCS5A01G391000	chr5D	465718841	465723600	4759	True	2280.00	4427	94.314333	468	5176	3	chr5D.!!$R1	4708
2	TraesCS5A01G391000	chr5B	572951188	572955913	4725	True	1603.95	4342	91.638750	497	5176	4	chr5B.!!$R1	4679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
332	333	0.028505	GCGATCGTAACCTAGCGTGA	59.971	55.0	17.81	0.00	0.00	4.35	F
1923	1973	0.028505	GCGTATGCATGCACCTCTTG	59.971	55.0	25.37	10.93	42.15	3.02	F
3262	3419	0.025898	CGCTGCACTGATCATCAACG	59.974	55.0	0.00	0.00	0.00	4.10	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
2276	2383	0.255033	TAGCAGAGCTCGTGGGTAGA	59.745	55.0	8.37	40.44	2.59	R
3756	3926	0.107081	CACACCAGGTTCCGGTACAA	59.893	55.0	13.64	34.02	2.41	R
4851	5058	0.172578	CGGCAGTGATGTACGGAAGA	59.827	55.0	0.00	0.00	2.87	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
17	18	4.166011	GTGTGATCCGCTTGCGGC	62.166	66.667	26.94	15.57	37.64	6.53
18	19	4.695993	TGTGATCCGCTTGCGGCA	62.696	61.111	26.94	17.86	41.91	5.69
19	20	3.869272	GTGATCCGCTTGCGGCAG	61.869	66.667	26.94	6.31	41.91	4.85
21	22	4.838152	GATCCGCTTGCGGCAGGA	62.838	66.667	26.94	13.86	43.53	3.86
22	23	4.845580	ATCCGCTTGCGGCAGGAG	62.846	66.667	26.94	12.70	43.00	3.69
121	122	4.849329	CGGCGGCGTGGAGTAGAC	62.849	72.222	24.74	0.00	0.00	2.59
122	123	4.849329	GGCGGCGTGGAGTAGACG	62.849	72.222	9.37	0.00	39.87	4.18
123	124	4.849329	GCGGCGTGGAGTAGACGG	62.849	72.222	9.37	0.00	37.30	4.79
124	125	3.129502	CGGCGTGGAGTAGACGGA	61.130	66.667	0.00	0.00	37.30	4.69
125	126	2.799371	GGCGTGGAGTAGACGGAG	59.201	66.667	0.00	0.00	37.30	4.63
126	127	2.102553	GCGTGGAGTAGACGGAGC	59.897	66.667	0.00	0.00	37.30	4.70
127	128	2.799371	CGTGGAGTAGACGGAGCC	59.201	66.667	0.00	0.00	33.08	4.70
128	129	2.799371	GTGGAGTAGACGGAGCCG	59.201	66.667	7.48	7.48	46.03	5.52
129	130	1.748122	GTGGAGTAGACGGAGCCGA	60.748	63.158	16.83	0.00	42.83	5.54
130	131	1.102222	GTGGAGTAGACGGAGCCGAT	61.102	60.000	16.83	6.30	42.83	4.18
131	132	1.101635	TGGAGTAGACGGAGCCGATG	61.102	60.000	16.83	0.00	42.83	3.84
132	133	1.008309	GAGTAGACGGAGCCGATGC	60.008	63.158	16.83	7.33	42.83	3.91
142	143	4.554036	GCCGATGCTCCTGGTCCC	62.554	72.222	0.00	0.00	33.53	4.46
143	144	4.227134	CCGATGCTCCTGGTCCCG	62.227	72.222	0.00	0.00	0.00	5.14
144	145	3.147595	CGATGCTCCTGGTCCCGA	61.148	66.667	0.00	0.00	0.00	5.14
145	146	2.502492	CGATGCTCCTGGTCCCGAT	61.502	63.158	0.00	0.00	0.00	4.18
146	147	1.369321	GATGCTCCTGGTCCCGATC	59.631	63.158	0.00	0.00	0.00	3.69
147	148	2.427540	GATGCTCCTGGTCCCGATCG	62.428	65.000	8.51	8.51	0.00	3.69
148	149	3.917760	GCTCCTGGTCCCGATCGG	61.918	72.222	27.65	27.65	0.00	4.18
149	150	2.123854	CTCCTGGTCCCGATCGGA	60.124	66.667	35.42	18.23	38.83	4.55
150	151	2.123854	TCCTGGTCCCGATCGGAG	60.124	66.667	35.42	22.97	43.19	4.63
156	157	4.826404	TCCCGATCGGAGCCGGAA	62.826	66.667	35.42	8.40	43.80	4.30
157	158	4.587189	CCCGATCGGAGCCGGAAC	62.587	72.222	35.42	0.00	43.80	3.62
158	159	4.925576	CCGATCGGAGCCGGAACG	62.926	72.222	30.62	6.00	46.16	3.95
177	178	4.812476	CGACGGCATCAAGCGGGA	62.812	66.667	0.00	0.00	46.82	5.14
178	179	2.892425	GACGGCATCAAGCGGGAG	60.892	66.667	0.00	0.00	46.82	4.30
179	180	4.473520	ACGGCATCAAGCGGGAGG	62.474	66.667	0.00	0.00	46.82	4.30
188	189	2.604686	AGCGGGAGGTTGAGCAGA	60.605	61.111	0.00	0.00	37.18	4.26
189	190	2.125350	GCGGGAGGTTGAGCAGAG	60.125	66.667	0.00	0.00	0.00	3.35
190	191	2.125350	CGGGAGGTTGAGCAGAGC	60.125	66.667	0.00	0.00	0.00	4.09
191	192	2.270527	GGGAGGTTGAGCAGAGCC	59.729	66.667	0.00	0.00	0.00	4.70
192	193	2.125350	GGAGGTTGAGCAGAGCCG	60.125	66.667	0.00	0.00	0.00	5.52
193	194	2.817396	GAGGTTGAGCAGAGCCGC	60.817	66.667	0.00	0.00	0.00	6.53
194	195	3.596066	GAGGTTGAGCAGAGCCGCA	62.596	63.158	0.00	0.00	0.00	5.69
195	196	2.669569	GGTTGAGCAGAGCCGCAA	60.670	61.111	0.00	0.00	0.00	4.85
196	197	2.684843	GGTTGAGCAGAGCCGCAAG	61.685	63.158	0.00	0.00	0.00	4.01
197	198	1.669115	GTTGAGCAGAGCCGCAAGA	60.669	57.895	0.00	0.00	43.02	3.02
198	199	1.375140	TTGAGCAGAGCCGCAAGAG	60.375	57.895	0.00	0.00	43.02	2.85
199	200	1.820010	TTGAGCAGAGCCGCAAGAGA	61.820	55.000	0.00	0.00	43.02	3.10
200	201	1.519013	GAGCAGAGCCGCAAGAGAG	60.519	63.158	0.00	0.00	43.02	3.20
201	202	2.511145	GCAGAGCCGCAAGAGAGG	60.511	66.667	0.00	0.00	43.02	3.69
208	209	4.521062	CGCAAGAGAGGCCGGGAG	62.521	72.222	2.18	0.00	43.02	4.30
222	223	2.045536	GGAGGAACCCTGCAGCAG	60.046	66.667	16.23	16.23	41.77	4.24
223	224	2.753029	GAGGAACCCTGCAGCAGT	59.247	61.111	21.26	4.84	31.76	4.40
224	225	1.673665	GAGGAACCCTGCAGCAGTG	60.674	63.158	21.26	12.77	31.76	3.66
225	226	2.674380	GGAACCCTGCAGCAGTGG	60.674	66.667	21.26	21.70	0.00	4.00
226	227	2.431683	GAACCCTGCAGCAGTGGA	59.568	61.111	27.58	0.00	0.00	4.02
227	228	1.228245	GAACCCTGCAGCAGTGGAA	60.228	57.895	27.58	0.00	0.00	3.53
228	229	1.518903	GAACCCTGCAGCAGTGGAAC	61.519	60.000	27.58	18.82	0.00	3.62
229	230	2.674380	CCCTGCAGCAGTGGAACC	60.674	66.667	21.26	0.00	37.80	3.62
230	231	3.052082	CCTGCAGCAGTGGAACCG	61.052	66.667	21.26	0.00	37.80	4.44
231	232	3.052082	CTGCAGCAGTGGAACCGG	61.052	66.667	14.90	0.00	37.80	5.28
232	233	3.832237	CTGCAGCAGTGGAACCGGT	62.832	63.158	14.90	0.00	37.80	5.28
233	234	3.357079	GCAGCAGTGGAACCGGTG	61.357	66.667	8.52	0.00	37.80	4.94
234	235	2.669569	CAGCAGTGGAACCGGTGG	60.670	66.667	8.52	0.00	37.80	4.61
235	236	3.168528	AGCAGTGGAACCGGTGGT	61.169	61.111	8.52	0.00	37.80	4.16
236	237	2.978010	GCAGTGGAACCGGTGGTG	60.978	66.667	8.52	2.41	37.80	4.17
237	238	2.281484	CAGTGGAACCGGTGGTGG	60.281	66.667	8.52	0.00	37.80	4.61
238	239	4.265056	AGTGGAACCGGTGGTGGC	62.265	66.667	8.52	0.00	37.80	5.01
263	264	3.578456	GACATGGTGGCGGTGAAG	58.422	61.111	0.00	0.00	0.00	3.02
264	265	2.034066	ACATGGTGGCGGTGAAGG	59.966	61.111	0.00	0.00	0.00	3.46
265	266	3.443045	CATGGTGGCGGTGAAGGC	61.443	66.667	0.00	0.00	37.19	4.35
296	297	4.895478	GCGGCGGTGCGGGTATTA	62.895	66.667	9.78	0.00	0.00	0.98
297	298	2.660552	CGGCGGTGCGGGTATTAG	60.661	66.667	0.00	0.00	0.00	1.73
298	299	2.280592	GGCGGTGCGGGTATTAGG	60.281	66.667	0.00	0.00	0.00	2.69
299	300	2.280592	GCGGTGCGGGTATTAGGG	60.281	66.667	0.00	0.00	0.00	3.53
300	301	3.097921	GCGGTGCGGGTATTAGGGT	62.098	63.158	0.00	0.00	0.00	4.34
301	302	1.523524	CGGTGCGGGTATTAGGGTT	59.476	57.895	0.00	0.00	0.00	4.11
302	303	0.107557	CGGTGCGGGTATTAGGGTTT	60.108	55.000	0.00	0.00	0.00	3.27
303	304	1.385528	GGTGCGGGTATTAGGGTTTG	58.614	55.000	0.00	0.00	0.00	2.93
304	305	1.385528	GTGCGGGTATTAGGGTTTGG	58.614	55.000	0.00	0.00	0.00	3.28
305	306	1.065272	GTGCGGGTATTAGGGTTTGGA	60.065	52.381	0.00	0.00	0.00	3.53
306	307	1.634459	TGCGGGTATTAGGGTTTGGAA	59.366	47.619	0.00	0.00	0.00	3.53
307	308	2.294979	GCGGGTATTAGGGTTTGGAAG	58.705	52.381	0.00	0.00	0.00	3.46
308	309	2.294979	CGGGTATTAGGGTTTGGAAGC	58.705	52.381	0.00	0.00	0.00	3.86
309	310	2.294979	GGGTATTAGGGTTTGGAAGCG	58.705	52.381	0.00	0.00	0.00	4.68
310	311	2.294979	GGTATTAGGGTTTGGAAGCGG	58.705	52.381	0.00	0.00	0.00	5.52
311	312	2.092807	GGTATTAGGGTTTGGAAGCGGA	60.093	50.000	0.00	0.00	0.00	5.54
312	313	2.891191	ATTAGGGTTTGGAAGCGGAA	57.109	45.000	0.00	0.00	0.00	4.30
313	314	2.194201	TTAGGGTTTGGAAGCGGAAG	57.806	50.000	0.00	0.00	0.00	3.46
327	328	2.033793	CGGAAGCGATCGTAACCTAG	57.966	55.000	17.81	2.69	0.00	3.02
328	329	1.768510	GGAAGCGATCGTAACCTAGC	58.231	55.000	17.81	0.00	0.00	3.42
329	330	1.396644	GAAGCGATCGTAACCTAGCG	58.603	55.000	17.81	0.00	0.00	4.26
330	331	0.737219	AAGCGATCGTAACCTAGCGT	59.263	50.000	17.81	0.00	0.00	5.07
331	332	0.029035	AGCGATCGTAACCTAGCGTG	59.971	55.000	17.81	0.00	0.00	5.34
332	333	0.028505	GCGATCGTAACCTAGCGTGA	59.971	55.000	17.81	0.00	0.00	4.35
333	334	1.334779	GCGATCGTAACCTAGCGTGAT	60.335	52.381	17.81	0.00	0.00	3.06
334	335	2.096069	GCGATCGTAACCTAGCGTGATA	60.096	50.000	17.81	0.00	0.00	2.15
335	336	3.477122	CGATCGTAACCTAGCGTGATAC	58.523	50.000	7.03	0.00	0.00	2.24
336	337	3.666374	CGATCGTAACCTAGCGTGATACC	60.666	52.174	7.03	0.00	0.00	2.73
337	338	2.642427	TCGTAACCTAGCGTGATACCA	58.358	47.619	0.00	0.00	0.00	3.25
338	339	3.216800	TCGTAACCTAGCGTGATACCAT	58.783	45.455	0.00	0.00	0.00	3.55
339	340	3.004002	TCGTAACCTAGCGTGATACCATG	59.996	47.826	0.00	0.00	0.00	3.66
340	341	3.243301	CGTAACCTAGCGTGATACCATGT	60.243	47.826	0.00	0.00	0.00	3.21
341	342	4.023792	CGTAACCTAGCGTGATACCATGTA	60.024	45.833	0.00	0.00	0.00	2.29
342	343	5.506151	CGTAACCTAGCGTGATACCATGTAA	60.506	44.000	0.00	0.00	0.00	2.41
343	344	4.585955	ACCTAGCGTGATACCATGTAAG	57.414	45.455	0.00	0.00	0.00	2.34
344	345	4.212716	ACCTAGCGTGATACCATGTAAGA	58.787	43.478	0.00	0.00	0.00	2.10
345	346	4.037684	ACCTAGCGTGATACCATGTAAGAC	59.962	45.833	0.00	0.00	0.00	3.01
346	347	4.037565	CCTAGCGTGATACCATGTAAGACA	59.962	45.833	0.00	0.00	0.00	3.41
347	348	4.465632	AGCGTGATACCATGTAAGACAA	57.534	40.909	0.00	0.00	0.00	3.18
348	349	5.023533	AGCGTGATACCATGTAAGACAAT	57.976	39.130	0.00	0.00	0.00	2.71
349	350	6.156748	AGCGTGATACCATGTAAGACAATA	57.843	37.500	0.00	0.00	0.00	1.90
350	351	6.578944	AGCGTGATACCATGTAAGACAATAA	58.421	36.000	0.00	0.00	0.00	1.40
351	352	6.701841	AGCGTGATACCATGTAAGACAATAAG	59.298	38.462	0.00	0.00	0.00	1.73
352	353	6.479001	GCGTGATACCATGTAAGACAATAAGT	59.521	38.462	0.00	0.00	0.00	2.24
353	354	7.011109	GCGTGATACCATGTAAGACAATAAGTT	59.989	37.037	0.00	0.00	0.00	2.66
354	355	8.879759	CGTGATACCATGTAAGACAATAAGTTT	58.120	33.333	0.00	0.00	0.00	2.66
358	359	7.227049	ACCATGTAAGACAATAAGTTTTGGG	57.773	36.000	0.00	0.00	0.00	4.12
359	360	6.210584	ACCATGTAAGACAATAAGTTTTGGGG	59.789	38.462	0.00	0.00	0.00	4.96
360	361	6.350949	CCATGTAAGACAATAAGTTTTGGGGG	60.351	42.308	0.00	0.00	0.00	5.40
361	362	5.954757	TGTAAGACAATAAGTTTTGGGGGA	58.045	37.500	0.00	0.00	0.00	4.81
362	363	6.374588	TGTAAGACAATAAGTTTTGGGGGAA	58.625	36.000	0.00	0.00	0.00	3.97
363	364	5.801531	AAGACAATAAGTTTTGGGGGAAC	57.198	39.130	0.00	0.00	0.00	3.62
376	377	4.081050	GGAACCAGCACAACCCTC	57.919	61.111	0.00	0.00	0.00	4.30
377	378	1.456287	GGAACCAGCACAACCCTCT	59.544	57.895	0.00	0.00	0.00	3.69
378	379	0.690762	GGAACCAGCACAACCCTCTA	59.309	55.000	0.00	0.00	0.00	2.43
379	380	1.339151	GGAACCAGCACAACCCTCTAG	60.339	57.143	0.00	0.00	0.00	2.43
380	381	0.693049	AACCAGCACAACCCTCTAGG	59.307	55.000	0.00	0.00	43.78	3.02
392	393	2.407340	CCTCTAGGGGTGGCTTATCT	57.593	55.000	0.00	0.00	0.00	1.98
393	394	2.252714	CCTCTAGGGGTGGCTTATCTC	58.747	57.143	0.00	0.00	0.00	2.75
394	395	2.426414	CCTCTAGGGGTGGCTTATCTCA	60.426	54.545	0.00	0.00	0.00	3.27
395	396	3.515562	CTCTAGGGGTGGCTTATCTCAT	58.484	50.000	0.00	0.00	0.00	2.90
396	397	3.906846	CTCTAGGGGTGGCTTATCTCATT	59.093	47.826	0.00	0.00	0.00	2.57
397	398	5.087323	CTCTAGGGGTGGCTTATCTCATTA	58.913	45.833	0.00	0.00	0.00	1.90
398	399	5.665701	TCTAGGGGTGGCTTATCTCATTAT	58.334	41.667	0.00	0.00	0.00	1.28
399	400	6.811574	TCTAGGGGTGGCTTATCTCATTATA	58.188	40.000	0.00	0.00	0.00	0.98
400	401	7.430844	TCTAGGGGTGGCTTATCTCATTATAT	58.569	38.462	0.00	0.00	0.00	0.86
401	402	8.574853	TCTAGGGGTGGCTTATCTCATTATATA	58.425	37.037	0.00	0.00	0.00	0.86
402	403	9.386122	CTAGGGGTGGCTTATCTCATTATATAT	57.614	37.037	0.00	0.00	0.00	0.86
404	405	9.744125	AGGGGTGGCTTATCTCATTATATATAA	57.256	33.333	7.62	7.62	0.00	0.98
466	467	9.848710	AGTACAGAAGCTATACATAGTCTAACA	57.151	33.333	0.00	0.00	32.96	2.41
467	468	9.881529	GTACAGAAGCTATACATAGTCTAACAC	57.118	37.037	0.00	0.00	32.96	3.32
468	469	8.754991	ACAGAAGCTATACATAGTCTAACACT	57.245	34.615	0.00	0.00	39.41	3.55
469	470	8.842280	ACAGAAGCTATACATAGTCTAACACTC	58.158	37.037	0.00	0.00	36.43	3.51
470	471	8.012809	CAGAAGCTATACATAGTCTAACACTCG	58.987	40.741	0.00	0.00	36.43	4.18
471	472	6.243811	AGCTATACATAGTCTAACACTCGC	57.756	41.667	0.00	0.00	36.43	5.03
472	473	5.181622	AGCTATACATAGTCTAACACTCGCC	59.818	44.000	0.00	0.00	36.43	5.54
473	474	5.048921	GCTATACATAGTCTAACACTCGCCA	60.049	44.000	0.00	0.00	36.43	5.69
474	475	5.847111	ATACATAGTCTAACACTCGCCAA	57.153	39.130	0.00	0.00	36.43	4.52
475	476	4.737855	ACATAGTCTAACACTCGCCAAT	57.262	40.909	0.00	0.00	36.43	3.16
476	477	4.433615	ACATAGTCTAACACTCGCCAATG	58.566	43.478	0.00	0.00	36.43	2.82
477	478	2.386661	AGTCTAACACTCGCCAATGG	57.613	50.000	0.00	0.00	0.00	3.16
478	479	0.727398	GTCTAACACTCGCCAATGGC	59.273	55.000	15.52	15.52	46.75	4.40
529	530	5.842907	ACTAAAAAGCCACTTTGCTAAAGG	58.157	37.500	11.59	4.66	41.80	3.11
530	531	4.753516	AAAAAGCCACTTTGCTAAAGGT	57.246	36.364	11.59	0.00	41.80	3.50
555	556	1.801309	GCAACCCAGCGGCTTTAACA	61.801	55.000	0.00	0.00	0.00	2.41
556	557	0.240945	CAACCCAGCGGCTTTAACAG	59.759	55.000	0.00	0.00	0.00	3.16
568	569	3.052745	GCTTTAACAGCTTTCACTTGCC	58.947	45.455	0.00	0.00	46.27	4.52
754	755	1.134694	GCCGCGATGTGTTTCCTTC	59.865	57.895	8.23	0.00	0.00	3.46
878	896	2.673368	CAAGAATCTCCGCAAGTGTACC	59.327	50.000	0.00	0.00	0.00	3.34
892	910	1.542915	GTGTACCGAGCTACTTGTCCA	59.457	52.381	0.00	0.00	0.00	4.02
934	953	7.881246	GCAAATCATTGTAGCTTCGTAGCTCT	61.881	42.308	20.53	0.00	45.28	4.09
992	1012	1.588932	CGTGTGTGTGACAGAGCGT	60.589	57.895	0.00	0.00	34.28	5.07
1003	1023	1.742831	GACAGAGCGTGAGAGAGATGT	59.257	52.381	0.00	0.00	0.00	3.06
1149	1178	1.823899	GGTGATGACATTCCGGGCC	60.824	63.158	0.00	0.00	0.00	5.80
1254	1283	1.759881	CATCCTGGCCCAGATCCTC	59.240	63.158	13.74	0.00	32.44	3.71
1314	1343	4.821589	CGCAAGGTCCGGCTCCTC	62.822	72.222	16.32	6.38	33.76	3.71
1524	1553	1.065928	CTCCACGCAGGTCCGATAC	59.934	63.158	0.00	0.00	39.02	2.24
1555	1587	5.915812	TCAATCTCGTTCGTTCAATTTCA	57.084	34.783	0.00	0.00	0.00	2.69
1559	1591	3.435327	TCTCGTTCGTTCAATTTCATGGG	59.565	43.478	0.00	0.00	0.00	4.00
1568	1600	2.911636	TCAATTTCATGGGCCATGGTTT	59.088	40.909	38.66	27.30	41.66	3.27
1569	1601	3.330110	TCAATTTCATGGGCCATGGTTTT	59.670	39.130	38.66	27.01	41.66	2.43
1570	1602	4.080687	CAATTTCATGGGCCATGGTTTTT	58.919	39.130	38.66	25.52	41.66	1.94
1590	1622	1.804151	TGTTAGCGCCATTCACAGAAC	59.196	47.619	2.29	0.00	0.00	3.01
1592	1624	0.323302	TAGCGCCATTCACAGAACCA	59.677	50.000	2.29	0.00	0.00	3.67
1595	1627	1.269517	GCGCCATTCACAGAACCAAAA	60.270	47.619	0.00	0.00	0.00	2.44
1658	1706	2.416431	GCATCAAGGAATTGACAGTGCC	60.416	50.000	4.48	0.00	31.70	5.01
1661	1709	2.642311	TCAAGGAATTGACAGTGCCCTA	59.358	45.455	0.00	0.00	0.00	3.53
1732	1780	1.000283	CACGAGGCATCTAGCTAAGGG	60.000	57.143	0.00	0.00	44.79	3.95
1849	1897	5.359292	GGAGAAAGGATGGAGGAAAATCTTG	59.641	44.000	0.00	0.00	0.00	3.02
1857	1907	1.215382	GGAAAATCTTGGCGCCACC	59.785	57.895	32.95	21.90	39.84	4.61
1921	1971	4.131376	GCGTATGCATGCACCTCT	57.869	55.556	25.37	9.96	42.15	3.69
1922	1972	2.397751	GCGTATGCATGCACCTCTT	58.602	52.632	25.37	9.52	42.15	2.85
1923	1973	0.028505	GCGTATGCATGCACCTCTTG	59.971	55.000	25.37	10.93	42.15	3.02
1925	1975	4.685322	GCGTATGCATGCACCTCTTGTG	62.685	54.545	25.37	8.22	44.06	3.33
1933	1987	1.879380	TGCACCTCTTGTGGAATTTCG	59.121	47.619	0.00	0.00	42.92	3.46
1934	1988	2.151202	GCACCTCTTGTGGAATTTCGA	58.849	47.619	0.00	0.00	45.55	3.71
1960	2018	6.329496	GTGGTCAACTTTGAAATTCTGTCAA	58.671	36.000	0.00	0.00	39.21	3.18
1961	2019	6.811170	GTGGTCAACTTTGAAATTCTGTCAAA	59.189	34.615	4.24	4.24	41.50	2.69
1962	2020	7.330700	GTGGTCAACTTTGAAATTCTGTCAAAA	59.669	33.333	5.54	0.00	42.73	2.44
1963	2021	7.875041	TGGTCAACTTTGAAATTCTGTCAAAAA	59.125	29.630	5.54	0.00	42.73	1.94
1997	2055	4.707105	TCTGTCAATATTGCATCGTGGAT	58.293	39.130	10.76	0.00	0.00	3.41
2274	2381	2.024846	CAGGTCTCCCTCTTCAGGTAGA	60.025	54.545	0.00	0.00	39.89	2.59
2275	2382	2.862597	AGGTCTCCCTCTTCAGGTAGAT	59.137	50.000	0.00	0.00	37.13	1.98
2276	2383	3.273618	AGGTCTCCCTCTTCAGGTAGATT	59.726	47.826	0.00	0.00	37.13	2.40
2277	2384	3.639561	GGTCTCCCTCTTCAGGTAGATTC	59.360	52.174	0.00	0.00	37.13	2.52
2278	2385	4.542697	GTCTCCCTCTTCAGGTAGATTCT	58.457	47.826	0.00	0.00	37.13	2.40
2280	2387	5.533528	GTCTCCCTCTTCAGGTAGATTCTAC	59.466	48.000	14.34	14.34	37.13	2.59
2282	2389	3.898741	CCCTCTTCAGGTAGATTCTACCC	59.101	52.174	30.75	17.60	38.30	3.69
2283	2390	4.547671	CCTCTTCAGGTAGATTCTACCCA	58.452	47.826	30.75	19.41	38.33	4.51
2284	2391	4.342665	CCTCTTCAGGTAGATTCTACCCAC	59.657	50.000	30.75	13.06	38.33	4.61
2286	2393	3.657398	TCAGGTAGATTCTACCCACGA	57.343	47.619	30.75	23.49	38.33	4.35
2287	2394	3.552875	TCAGGTAGATTCTACCCACGAG	58.447	50.000	30.75	19.01	38.33	4.18
2288	2395	2.034812	CAGGTAGATTCTACCCACGAGC	59.965	54.545	30.75	11.24	38.33	5.03
2289	2396	2.091775	AGGTAGATTCTACCCACGAGCT	60.092	50.000	30.75	13.97	38.33	4.09
2290	2397	2.293955	GGTAGATTCTACCCACGAGCTC	59.706	54.545	26.33	2.73	0.00	4.09
2291	2398	2.445682	AGATTCTACCCACGAGCTCT	57.554	50.000	12.85	0.00	0.00	4.09
2293	2400	0.461961	ATTCTACCCACGAGCTCTGC	59.538	55.000	12.85	0.00	0.00	4.26
2294	2401	0.612174	TTCTACCCACGAGCTCTGCT	60.612	55.000	12.85	0.00	43.88	4.24
2295	2402	0.255033	TCTACCCACGAGCTCTGCTA	59.745	55.000	12.85	1.58	39.88	3.49
2299	2406	1.086634	CCCACGAGCTCTGCTAAAGC	61.087	60.000	12.85	0.00	39.88	3.51
2312	2419	8.779603	GCTCTGCTAAAGCTAATCTTAATTTG	57.220	34.615	3.26	0.00	42.66	2.32
2314	2421	8.225603	TCTGCTAAAGCTAATCTTAATTTGGG	57.774	34.615	3.26	0.00	42.66	4.12
2315	2422	7.285401	TCTGCTAAAGCTAATCTTAATTTGGGG	59.715	37.037	3.26	0.00	42.66	4.96
2316	2423	7.122715	TGCTAAAGCTAATCTTAATTTGGGGA	58.877	34.615	3.26	0.00	42.66	4.81
2317	2424	7.285401	TGCTAAAGCTAATCTTAATTTGGGGAG	59.715	37.037	3.26	0.00	42.66	4.30
2318	2425	7.255625	GCTAAAGCTAATCTTAATTTGGGGAGG	60.256	40.741	0.00	0.00	38.21	4.30
2332	2468	3.270812	TGGGGAGGTAATTTGGGTTACT	58.729	45.455	0.00	0.00	35.43	2.24
2333	2469	3.663632	TGGGGAGGTAATTTGGGTTACTT	59.336	43.478	0.00	0.00	35.43	2.24
2335	2471	5.195940	GGGGAGGTAATTTGGGTTACTTAC	58.804	45.833	0.00	0.00	35.43	2.34
2336	2472	5.281141	GGGGAGGTAATTTGGGTTACTTACA	60.281	44.000	0.00	0.00	35.43	2.41
2337	2473	6.247676	GGGAGGTAATTTGGGTTACTTACAA	58.752	40.000	0.00	0.00	35.43	2.41
2338	2474	6.151648	GGGAGGTAATTTGGGTTACTTACAAC	59.848	42.308	0.00	0.00	35.43	3.32
2339	2475	6.944290	GGAGGTAATTTGGGTTACTTACAACT	59.056	38.462	0.00	0.00	35.43	3.16
2340	2476	7.449395	GGAGGTAATTTGGGTTACTTACAACTT	59.551	37.037	0.00	0.00	35.43	2.66
2341	2477	8.771521	AGGTAATTTGGGTTACTTACAACTTT	57.228	30.769	0.00	0.00	35.43	2.66
2342	2478	8.635328	AGGTAATTTGGGTTACTTACAACTTTG	58.365	33.333	0.00	0.00	35.43	2.77
2343	2479	7.868922	GGTAATTTGGGTTACTTACAACTTTGG	59.131	37.037	0.00	0.00	35.43	3.28
2344	2480	7.663043	AATTTGGGTTACTTACAACTTTGGA	57.337	32.000	0.00	0.00	0.00	3.53
2345	2481	7.849322	ATTTGGGTTACTTACAACTTTGGAT	57.151	32.000	0.00	0.00	0.00	3.41
2757	2893	0.687354	TCTCCAACCAGCTCTTCACC	59.313	55.000	0.00	0.00	0.00	4.02
2758	2894	0.689623	CTCCAACCAGCTCTTCACCT	59.310	55.000	0.00	0.00	0.00	4.00
2760	2896	0.322008	CCAACCAGCTCTTCACCTCC	60.322	60.000	0.00	0.00	0.00	4.30
2761	2897	0.397941	CAACCAGCTCTTCACCTCCA	59.602	55.000	0.00	0.00	0.00	3.86
2781	2917	1.445582	GGGCCAGAAGTACGACACG	60.446	63.158	4.39	0.00	0.00	4.49
2817	2953	1.002250	CCGACTTCGACCTCAACGTG	61.002	60.000	0.00	0.00	43.02	4.49
3205	3341	3.923017	CCAACCAGGTGAACATCTTTC	57.077	47.619	0.00	0.00	0.00	2.62
3207	3343	3.891366	CCAACCAGGTGAACATCTTTCTT	59.109	43.478	0.00	0.00	0.00	2.52
3208	3344	4.022849	CCAACCAGGTGAACATCTTTCTTC	60.023	45.833	0.00	0.00	0.00	2.87
3209	3345	3.756117	ACCAGGTGAACATCTTTCTTCC	58.244	45.455	0.00	0.00	0.00	3.46
3210	3346	2.744202	CCAGGTGAACATCTTTCTTCCG	59.256	50.000	0.00	0.00	0.00	4.30
3211	3347	3.403038	CAGGTGAACATCTTTCTTCCGT	58.597	45.455	0.00	0.00	0.00	4.69
3214	3350	4.065789	GGTGAACATCTTTCTTCCGTTCT	58.934	43.478	0.00	0.00	37.46	3.01
3262	3419	0.025898	CGCTGCACTGATCATCAACG	59.974	55.000	0.00	0.00	0.00	4.10
3272	3429	2.802247	TGATCATCAACGGATTCATCGC	59.198	45.455	0.00	0.00	0.00	4.58
3308	3465	1.409790	CAACCCGGGTACGACATCATA	59.590	52.381	30.52	0.00	44.60	2.15
3335	3492	1.081442	CATGATCGGCTACGCGCTA	60.081	57.895	5.73	0.00	40.69	4.26
3446	3603	1.541233	GGCCACTACATGAAGATCCCG	60.541	57.143	0.00	0.00	0.00	5.14
3514	3677	1.207488	AGCCCCCACAATGCACTAGA	61.207	55.000	0.00	0.00	0.00	2.43
3540	3710	0.242825	TCACTCGCTGAACTAACCGG	59.757	55.000	0.00	0.00	0.00	5.28
3788	3958	2.251642	GGTGTGGCTGTTCGTGGTC	61.252	63.158	0.00	0.00	0.00	4.02
4007	4177	3.366679	GGCAGAAGTACAACTACGTGCTA	60.367	47.826	0.00	0.00	33.12	3.49
4246	4420	1.953138	GCAGCGATCATCGTCTGGG	60.953	63.158	23.85	8.30	42.81	4.45
4281	4457	3.118884	GCCATGAATTCAACCTCTGCATT	60.119	43.478	13.09	0.00	0.00	3.56
4388	4569	8.472683	AGCTTATATAAAATCATCGCTCTGAC	57.527	34.615	0.00	0.00	0.00	3.51
4396	4581	4.937696	ATCATCGCTCTGACTATACTCG	57.062	45.455	0.00	0.00	0.00	4.18
4410	4595	5.317808	ACTATACTCGTAGGCAGATCACAT	58.682	41.667	0.00	0.00	0.00	3.21
4417	4602	3.726607	GTAGGCAGATCACATCCTTCAG	58.273	50.000	0.00	0.00	0.00	3.02
4429	4614	6.867550	TCACATCCTTCAGTATTAGTGTGAG	58.132	40.000	0.00	0.00	39.57	3.51
4432	4617	6.613271	ACATCCTTCAGTATTAGTGTGAGGAT	59.387	38.462	21.01	21.01	40.16	3.24
4458	4644	5.290158	CACATAGAAATGGTCAATGCAAAGC	59.710	40.000	0.00	0.00	37.43	3.51
4474	4660	3.487879	GCAAAGCAGCAAACAAAGCAATT	60.488	39.130	0.00	0.00	0.00	2.32
4475	4661	4.664188	CAAAGCAGCAAACAAAGCAATTT	58.336	34.783	0.00	0.00	0.00	1.82
4476	4662	3.955771	AGCAGCAAACAAAGCAATTTG	57.044	38.095	0.00	0.00	38.57	2.32
4499	4685	5.126067	GCAAGGATACAGGAATACACACAT	58.874	41.667	0.00	0.00	41.41	3.21
4510	4696	6.857964	CAGGAATACACACATTTTGACAGAAC	59.142	38.462	0.00	0.00	0.00	3.01
4512	4698	7.231317	AGGAATACACACATTTTGACAGAACAT	59.769	33.333	0.00	0.00	0.00	2.71
4546	4749	8.143193	AGAACAGAGCATATTCACTATTCTCAG	58.857	37.037	0.00	0.00	33.86	3.35
4567	4770	3.319405	AGTTGTCACCTATCAGGCTATCG	59.681	47.826	0.00	0.00	39.63	2.92
4791	4998	0.620556	GCCCTCTCAGGAAATCCACA	59.379	55.000	1.67	0.00	37.67	4.17
4835	5042	2.602676	CCTCCCCCATGTCGTTGGT	61.603	63.158	0.00	0.00	34.77	3.67
4839	5046	2.282110	CCCATGTCGTTGGTGCCA	60.282	61.111	0.00	0.00	34.77	4.92
4851	5058	2.031163	GTGCCACTGTTCCTCGCT	59.969	61.111	0.00	0.00	0.00	4.93
4854	5061	1.004440	GCCACTGTTCCTCGCTCTT	60.004	57.895	0.00	0.00	0.00	2.85
4892	5099	4.051167	TAGAGCCCCCACCGACGA	62.051	66.667	0.00	0.00	0.00	4.20
4947	5160	3.957586	TGCACCACCTCCCTGCTG	61.958	66.667	0.00	0.00	0.00	4.41
4989	5202	0.676466	TCCCAACGATGAAATGCGCT	60.676	50.000	9.73	0.00	0.00	5.92
5000	5213	1.665679	GAAATGCGCTCCGATCTTCAA	59.334	47.619	9.73	0.00	0.00	2.69
5085	5298	2.767972	TCCACCTGGATCAGATCACAT	58.232	47.619	12.66	0.00	39.78	3.21
5160	5373	3.333414	CGTAGGGATTGCATGCCG	58.667	61.111	16.68	4.66	46.65	5.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
67	68	3.991051	ACCTCGTGGTCCACAGCG	61.991	66.667	21.91	8.39	44.78	5.18
104	105	4.849329	GTCTACTCCACGCCGCCG	62.849	72.222	0.00	0.00	41.14	6.46
105	106	4.849329	CGTCTACTCCACGCCGCC	62.849	72.222	0.00	0.00	0.00	6.13
106	107	4.849329	CCGTCTACTCCACGCCGC	62.849	72.222	0.00	0.00	35.87	6.53
107	108	3.109612	CTCCGTCTACTCCACGCCG	62.110	68.421	0.00	0.00	35.87	6.46
108	109	2.799371	CTCCGTCTACTCCACGCC	59.201	66.667	0.00	0.00	35.87	5.68
109	110	2.102553	GCTCCGTCTACTCCACGC	59.897	66.667	0.00	0.00	35.87	5.34
110	111	2.799371	GGCTCCGTCTACTCCACG	59.201	66.667	0.00	0.00	36.99	4.94
111	112	1.102222	ATCGGCTCCGTCTACTCCAC	61.102	60.000	8.28	0.00	40.74	4.02
112	113	1.101635	CATCGGCTCCGTCTACTCCA	61.102	60.000	8.28	0.00	40.74	3.86
113	114	1.655329	CATCGGCTCCGTCTACTCC	59.345	63.158	8.28	0.00	40.74	3.85
114	115	1.008309	GCATCGGCTCCGTCTACTC	60.008	63.158	8.28	0.00	40.74	2.59
115	116	3.121019	GCATCGGCTCCGTCTACT	58.879	61.111	8.28	0.00	40.74	2.57
125	126	4.554036	GGGACCAGGAGCATCGGC	62.554	72.222	0.00	0.00	41.61	5.54
126	127	4.227134	CGGGACCAGGAGCATCGG	62.227	72.222	0.00	0.00	34.37	4.18
127	128	2.427540	GATCGGGACCAGGAGCATCG	62.428	65.000	0.00	0.00	34.37	3.84
128	129	1.369321	GATCGGGACCAGGAGCATC	59.631	63.158	0.00	0.00	0.00	3.91
129	130	2.502492	CGATCGGGACCAGGAGCAT	61.502	63.158	7.38	0.00	0.00	3.79
130	131	3.147595	CGATCGGGACCAGGAGCA	61.148	66.667	7.38	0.00	0.00	4.26
131	132	3.917760	CCGATCGGGACCAGGAGC	61.918	72.222	26.95	0.00	38.47	4.70
132	133	2.123854	TCCGATCGGGACCAGGAG	60.124	66.667	32.79	5.07	40.94	3.69
133	134	2.123854	CTCCGATCGGGACCAGGA	60.124	66.667	32.79	11.72	40.94	3.86
134	135	3.917760	GCTCCGATCGGGACCAGG	61.918	72.222	32.79	16.51	40.94	4.45
135	136	3.917760	GGCTCCGATCGGGACCAG	61.918	72.222	32.79	23.08	40.94	4.00
139	140	4.826404	TTCCGGCTCCGATCGGGA	62.826	66.667	32.79	19.13	45.69	5.14
140	141	4.587189	GTTCCGGCTCCGATCGGG	62.587	72.222	32.79	23.49	45.69	5.14
141	142	4.925576	CGTTCCGGCTCCGATCGG	62.926	72.222	28.62	28.62	46.89	4.18
142	143	4.925576	CCGTTCCGGCTCCGATCG	62.926	72.222	8.51	8.51	41.17	3.69
154	155	3.083600	CTTGATGCCGTCGCCGTTC	62.084	63.158	0.00	0.00	0.00	3.95
155	156	3.118454	CTTGATGCCGTCGCCGTT	61.118	61.111	0.00	0.00	0.00	4.44
160	161	4.812476	TCCCGCTTGATGCCGTCG	62.812	66.667	0.00	0.00	38.78	5.12
161	162	2.892425	CTCCCGCTTGATGCCGTC	60.892	66.667	0.00	0.00	38.78	4.79
162	163	4.473520	CCTCCCGCTTGATGCCGT	62.474	66.667	0.00	0.00	38.78	5.68
163	164	3.976701	AACCTCCCGCTTGATGCCG	62.977	63.158	0.00	0.00	38.78	5.69
164	165	2.044946	AACCTCCCGCTTGATGCC	60.045	61.111	0.00	0.00	38.78	4.40
165	166	1.372087	CTCAACCTCCCGCTTGATGC	61.372	60.000	0.00	0.00	38.57	3.91
166	167	1.372087	GCTCAACCTCCCGCTTGATG	61.372	60.000	0.00	0.00	0.00	3.07
167	168	1.078143	GCTCAACCTCCCGCTTGAT	60.078	57.895	0.00	0.00	0.00	2.57
168	169	2.347490	GCTCAACCTCCCGCTTGA	59.653	61.111	0.00	0.00	0.00	3.02
169	170	2.032528	TGCTCAACCTCCCGCTTG	59.967	61.111	0.00	0.00	0.00	4.01
170	171	2.177594	CTCTGCTCAACCTCCCGCTT	62.178	60.000	0.00	0.00	0.00	4.68
171	172	2.604686	TCTGCTCAACCTCCCGCT	60.605	61.111	0.00	0.00	0.00	5.52
172	173	2.125350	CTCTGCTCAACCTCCCGC	60.125	66.667	0.00	0.00	0.00	6.13
173	174	2.125350	GCTCTGCTCAACCTCCCG	60.125	66.667	0.00	0.00	0.00	5.14
174	175	2.270527	GGCTCTGCTCAACCTCCC	59.729	66.667	0.00	0.00	0.00	4.30
175	176	2.125350	CGGCTCTGCTCAACCTCC	60.125	66.667	0.00	0.00	0.00	4.30
176	177	2.817396	GCGGCTCTGCTCAACCTC	60.817	66.667	0.00	0.00	0.00	3.85
177	178	3.182590	TTGCGGCTCTGCTCAACCT	62.183	57.895	0.00	0.00	35.36	3.50
178	179	2.669569	TTGCGGCTCTGCTCAACC	60.670	61.111	0.00	0.00	35.36	3.77
179	180	1.633852	CTCTTGCGGCTCTGCTCAAC	61.634	60.000	0.00	0.00	35.36	3.18
180	181	1.375140	CTCTTGCGGCTCTGCTCAA	60.375	57.895	0.00	0.00	35.36	3.02
181	182	2.223200	CTCTCTTGCGGCTCTGCTCA	62.223	60.000	0.00	0.00	35.36	4.26
182	183	1.519013	CTCTCTTGCGGCTCTGCTC	60.519	63.158	0.00	0.00	35.36	4.26
183	184	2.578128	CTCTCTTGCGGCTCTGCT	59.422	61.111	0.00	0.00	35.36	4.24
184	185	2.511145	CCTCTCTTGCGGCTCTGC	60.511	66.667	0.00	0.00	0.00	4.26
185	186	2.511145	GCCTCTCTTGCGGCTCTG	60.511	66.667	0.00	0.00	40.68	3.35
186	187	3.780173	GGCCTCTCTTGCGGCTCT	61.780	66.667	0.00	0.00	43.22	4.09
191	192	4.521062	CTCCCGGCCTCTCTTGCG	62.521	72.222	0.00	0.00	0.00	4.85
192	193	4.168291	CCTCCCGGCCTCTCTTGC	62.168	72.222	0.00	0.00	0.00	4.01
193	194	1.990060	TTCCTCCCGGCCTCTCTTG	60.990	63.158	0.00	0.00	0.00	3.02
194	195	1.990614	GTTCCTCCCGGCCTCTCTT	60.991	63.158	0.00	0.00	0.00	2.85
195	196	2.364448	GTTCCTCCCGGCCTCTCT	60.364	66.667	0.00	0.00	0.00	3.10
196	197	3.471806	GGTTCCTCCCGGCCTCTC	61.472	72.222	0.00	0.00	0.00	3.20
205	206	2.045536	CTGCTGCAGGGTTCCTCC	60.046	66.667	21.71	0.00	0.00	4.30
206	207	1.673665	CACTGCTGCAGGGTTCCTC	60.674	63.158	31.00	0.00	35.51	3.71
207	208	2.433446	CACTGCTGCAGGGTTCCT	59.567	61.111	31.00	8.45	35.51	3.36
208	209	2.674380	CCACTGCTGCAGGGTTCC	60.674	66.667	31.00	0.00	32.12	3.62
209	210	1.228245	TTCCACTGCTGCAGGGTTC	60.228	57.895	31.00	0.00	32.12	3.62
210	211	1.529244	GTTCCACTGCTGCAGGGTT	60.529	57.895	31.00	9.97	32.12	4.11
211	212	2.113986	GTTCCACTGCTGCAGGGT	59.886	61.111	31.00	11.57	32.12	4.34
212	213	2.674380	GGTTCCACTGCTGCAGGG	60.674	66.667	31.00	28.04	35.51	4.45
213	214	3.052082	CGGTTCCACTGCTGCAGG	61.052	66.667	31.00	19.91	35.51	4.85
214	215	3.052082	CCGGTTCCACTGCTGCAG	61.052	66.667	27.02	27.02	37.52	4.41
215	216	3.872603	ACCGGTTCCACTGCTGCA	61.873	61.111	0.00	0.88	0.00	4.41
216	217	3.357079	CACCGGTTCCACTGCTGC	61.357	66.667	2.97	0.00	0.00	5.25
217	218	2.669569	CCACCGGTTCCACTGCTG	60.670	66.667	2.97	0.00	0.00	4.41
218	219	3.168528	ACCACCGGTTCCACTGCT	61.169	61.111	2.97	0.00	27.29	4.24
219	220	2.978010	CACCACCGGTTCCACTGC	60.978	66.667	2.97	0.00	31.02	4.40
220	221	2.281484	CCACCACCGGTTCCACTG	60.281	66.667	2.97	0.00	31.02	3.66
221	222	4.265056	GCCACCACCGGTTCCACT	62.265	66.667	2.97	0.00	31.02	4.00
242	243	4.760047	ACCGCCACCATGTCGAGC	62.760	66.667	0.00	0.00	0.00	5.03
243	244	2.779951	TTCACCGCCACCATGTCGAG	62.780	60.000	0.00	0.00	0.00	4.04
244	245	2.779951	CTTCACCGCCACCATGTCGA	62.780	60.000	0.00	0.00	0.00	4.20
245	246	2.358125	TTCACCGCCACCATGTCG	60.358	61.111	0.00	0.00	0.00	4.35
246	247	2.040544	CCTTCACCGCCACCATGTC	61.041	63.158	0.00	0.00	0.00	3.06
247	248	2.034066	CCTTCACCGCCACCATGT	59.966	61.111	0.00	0.00	0.00	3.21
248	249	3.443045	GCCTTCACCGCCACCATG	61.443	66.667	0.00	0.00	0.00	3.66
279	280	4.895478	TAATACCCGCACCGCCGC	62.895	66.667	0.00	0.00	0.00	6.53
280	281	2.660552	CTAATACCCGCACCGCCG	60.661	66.667	0.00	0.00	0.00	6.46
281	282	2.280592	CCTAATACCCGCACCGCC	60.281	66.667	0.00	0.00	0.00	6.13
282	283	2.280592	CCCTAATACCCGCACCGC	60.281	66.667	0.00	0.00	0.00	5.68
283	284	0.107557	AAACCCTAATACCCGCACCG	60.108	55.000	0.00	0.00	0.00	4.94
284	285	1.385528	CAAACCCTAATACCCGCACC	58.614	55.000	0.00	0.00	0.00	5.01
285	286	1.065272	TCCAAACCCTAATACCCGCAC	60.065	52.381	0.00	0.00	0.00	5.34
286	287	1.287217	TCCAAACCCTAATACCCGCA	58.713	50.000	0.00	0.00	0.00	5.69
287	288	2.294979	CTTCCAAACCCTAATACCCGC	58.705	52.381	0.00	0.00	0.00	6.13
288	289	2.294979	GCTTCCAAACCCTAATACCCG	58.705	52.381	0.00	0.00	0.00	5.28
289	290	2.294979	CGCTTCCAAACCCTAATACCC	58.705	52.381	0.00	0.00	0.00	3.69
290	291	2.092807	TCCGCTTCCAAACCCTAATACC	60.093	50.000	0.00	0.00	0.00	2.73
291	292	3.271055	TCCGCTTCCAAACCCTAATAC	57.729	47.619	0.00	0.00	0.00	1.89
292	293	3.881220	CTTCCGCTTCCAAACCCTAATA	58.119	45.455	0.00	0.00	0.00	0.98
293	294	2.723273	CTTCCGCTTCCAAACCCTAAT	58.277	47.619	0.00	0.00	0.00	1.73
294	295	1.884928	GCTTCCGCTTCCAAACCCTAA	60.885	52.381	0.00	0.00	0.00	2.69
295	296	0.322187	GCTTCCGCTTCCAAACCCTA	60.322	55.000	0.00	0.00	0.00	3.53
296	297	1.603739	GCTTCCGCTTCCAAACCCT	60.604	57.895	0.00	0.00	0.00	4.34
297	298	2.962569	GCTTCCGCTTCCAAACCC	59.037	61.111	0.00	0.00	0.00	4.11
298	299	1.305930	ATCGCTTCCGCTTCCAAACC	61.306	55.000	0.00	0.00	0.00	3.27
299	300	0.097150	GATCGCTTCCGCTTCCAAAC	59.903	55.000	0.00	0.00	0.00	2.93
300	301	1.358725	CGATCGCTTCCGCTTCCAAA	61.359	55.000	0.26	0.00	0.00	3.28
301	302	1.809619	CGATCGCTTCCGCTTCCAA	60.810	57.895	0.26	0.00	0.00	3.53
302	303	1.659622	TACGATCGCTTCCGCTTCCA	61.660	55.000	16.60	0.00	0.00	3.53
303	304	0.526954	TTACGATCGCTTCCGCTTCC	60.527	55.000	16.60	0.00	0.00	3.46
304	305	0.571197	GTTACGATCGCTTCCGCTTC	59.429	55.000	16.60	0.00	0.00	3.86
305	306	0.804933	GGTTACGATCGCTTCCGCTT	60.805	55.000	16.60	0.00	0.00	4.68
306	307	1.226888	GGTTACGATCGCTTCCGCT	60.227	57.895	16.60	0.00	0.00	5.52
307	308	0.029834	TAGGTTACGATCGCTTCCGC	59.970	55.000	16.60	0.00	0.00	5.54
308	309	1.925068	GCTAGGTTACGATCGCTTCCG	60.925	57.143	16.60	4.59	0.00	4.30
309	310	1.768510	GCTAGGTTACGATCGCTTCC	58.231	55.000	16.60	14.35	0.00	3.46
310	311	1.268437	ACGCTAGGTTACGATCGCTTC	60.268	52.381	16.60	5.25	0.00	3.86
311	312	0.737219	ACGCTAGGTTACGATCGCTT	59.263	50.000	16.60	0.00	0.00	4.68
312	313	0.029035	CACGCTAGGTTACGATCGCT	59.971	55.000	16.60	6.62	0.00	4.93
313	314	0.028505	TCACGCTAGGTTACGATCGC	59.971	55.000	16.60	0.00	0.00	4.58
314	315	2.682952	ATCACGCTAGGTTACGATCG	57.317	50.000	14.88	14.88	0.00	3.69
315	316	3.251729	TGGTATCACGCTAGGTTACGATC	59.748	47.826	0.00	0.00	0.00	3.69
316	317	3.216800	TGGTATCACGCTAGGTTACGAT	58.783	45.455	0.00	0.00	0.00	3.73
317	318	2.642427	TGGTATCACGCTAGGTTACGA	58.358	47.619	0.00	0.00	0.00	3.43
318	319	3.243301	ACATGGTATCACGCTAGGTTACG	60.243	47.826	0.00	0.00	0.00	3.18
319	320	4.317671	ACATGGTATCACGCTAGGTTAC	57.682	45.455	0.00	0.00	0.00	2.50
320	321	5.829391	TCTTACATGGTATCACGCTAGGTTA	59.171	40.000	0.00	0.00	0.00	2.85
321	322	4.647853	TCTTACATGGTATCACGCTAGGTT	59.352	41.667	0.00	0.00	0.00	3.50
322	323	4.037684	GTCTTACATGGTATCACGCTAGGT	59.962	45.833	0.00	0.00	0.00	3.08
323	324	4.037565	TGTCTTACATGGTATCACGCTAGG	59.962	45.833	0.00	0.00	0.00	3.02
324	325	5.183014	TGTCTTACATGGTATCACGCTAG	57.817	43.478	0.00	0.00	0.00	3.42
325	326	5.585820	TTGTCTTACATGGTATCACGCTA	57.414	39.130	0.00	0.00	0.00	4.26
326	327	4.465632	TTGTCTTACATGGTATCACGCT	57.534	40.909	0.00	0.00	0.00	5.07
327	328	6.479001	ACTTATTGTCTTACATGGTATCACGC	59.521	38.462	0.00	0.00	0.00	5.34
328	329	8.420374	AACTTATTGTCTTACATGGTATCACG	57.580	34.615	0.00	0.00	0.00	4.35
332	333	8.966868	CCCAAAACTTATTGTCTTACATGGTAT	58.033	33.333	0.00	0.00	0.00	2.73
333	334	7.394923	CCCCAAAACTTATTGTCTTACATGGTA	59.605	37.037	0.00	0.00	0.00	3.25
334	335	6.210584	CCCCAAAACTTATTGTCTTACATGGT	59.789	38.462	0.00	0.00	0.00	3.55
335	336	6.350949	CCCCCAAAACTTATTGTCTTACATGG	60.351	42.308	0.00	0.00	0.00	3.66
336	337	6.435904	TCCCCCAAAACTTATTGTCTTACATG	59.564	38.462	0.00	0.00	0.00	3.21
337	338	6.557568	TCCCCCAAAACTTATTGTCTTACAT	58.442	36.000	0.00	0.00	0.00	2.29
338	339	5.954757	TCCCCCAAAACTTATTGTCTTACA	58.045	37.500	0.00	0.00	0.00	2.41
339	340	6.294899	GGTTCCCCCAAAACTTATTGTCTTAC	60.295	42.308	0.00	0.00	0.00	2.34
340	341	5.776208	GGTTCCCCCAAAACTTATTGTCTTA	59.224	40.000	0.00	0.00	0.00	2.10
341	342	4.591498	GGTTCCCCCAAAACTTATTGTCTT	59.409	41.667	0.00	0.00	0.00	3.01
342	343	4.157246	GGTTCCCCCAAAACTTATTGTCT	58.843	43.478	0.00	0.00	0.00	3.41
343	344	3.898741	TGGTTCCCCCAAAACTTATTGTC	59.101	43.478	0.00	0.00	41.50	3.18
344	345	3.901222	CTGGTTCCCCCAAAACTTATTGT	59.099	43.478	0.00	0.00	44.65	2.71
345	346	3.306710	GCTGGTTCCCCCAAAACTTATTG	60.307	47.826	0.00	0.00	44.65	1.90
346	347	2.903784	GCTGGTTCCCCCAAAACTTATT	59.096	45.455	0.00	0.00	44.65	1.40
347	348	2.158234	TGCTGGTTCCCCCAAAACTTAT	60.158	45.455	0.00	0.00	44.65	1.73
348	349	1.218196	TGCTGGTTCCCCCAAAACTTA	59.782	47.619	0.00	0.00	44.65	2.24
349	350	0.031616	TGCTGGTTCCCCCAAAACTT	60.032	50.000	0.00	0.00	44.65	2.66
350	351	0.759060	GTGCTGGTTCCCCCAAAACT	60.759	55.000	0.00	0.00	44.65	2.66
351	352	1.045911	TGTGCTGGTTCCCCCAAAAC	61.046	55.000	0.00	0.00	44.65	2.43
352	353	0.325671	TTGTGCTGGTTCCCCCAAAA	60.326	50.000	0.00	0.00	44.65	2.44
353	354	1.045911	GTTGTGCTGGTTCCCCCAAA	61.046	55.000	0.00	0.00	44.65	3.28
354	355	1.456705	GTTGTGCTGGTTCCCCCAA	60.457	57.895	0.00	0.00	44.65	4.12
355	356	2.197324	GTTGTGCTGGTTCCCCCA	59.803	61.111	0.00	0.00	42.51	4.96
356	357	2.600470	GGTTGTGCTGGTTCCCCC	60.600	66.667	0.00	0.00	0.00	5.40
357	358	2.600470	GGGTTGTGCTGGTTCCCC	60.600	66.667	0.00	0.00	32.66	4.81
358	359	1.603739	GAGGGTTGTGCTGGTTCCC	60.604	63.158	0.00	0.00	38.50	3.97
359	360	0.690762	TAGAGGGTTGTGCTGGTTCC	59.309	55.000	0.00	0.00	0.00	3.62
360	361	1.339151	CCTAGAGGGTTGTGCTGGTTC	60.339	57.143	0.00	0.00	0.00	3.62
361	362	0.693049	CCTAGAGGGTTGTGCTGGTT	59.307	55.000	0.00	0.00	0.00	3.67
362	363	2.377136	CCTAGAGGGTTGTGCTGGT	58.623	57.895	0.00	0.00	0.00	4.00
373	374	2.252714	GAGATAAGCCACCCCTAGAGG	58.747	57.143	0.00	0.00	0.00	3.69
374	375	2.964209	TGAGATAAGCCACCCCTAGAG	58.036	52.381	0.00	0.00	0.00	2.43
375	376	3.637821	ATGAGATAAGCCACCCCTAGA	57.362	47.619	0.00	0.00	0.00	2.43
376	377	7.682787	ATATAATGAGATAAGCCACCCCTAG	57.317	40.000	0.00	0.00	0.00	3.02
378	379	9.744125	TTATATATAATGAGATAAGCCACCCCT	57.256	33.333	0.81	0.00	0.00	4.79
440	441	9.848710	TGTTAGACTATGTATAGCTTCTGTACT	57.151	33.333	0.00	0.00	33.68	2.73
441	442	9.881529	GTGTTAGACTATGTATAGCTTCTGTAC	57.118	37.037	0.00	0.00	33.68	2.90
442	443	9.848710	AGTGTTAGACTATGTATAGCTTCTGTA	57.151	33.333	0.00	0.00	33.68	2.74
443	444	8.754991	AGTGTTAGACTATGTATAGCTTCTGT	57.245	34.615	0.00	0.00	33.68	3.41
444	445	8.012809	CGAGTGTTAGACTATGTATAGCTTCTG	58.987	40.741	0.00	0.00	33.83	3.02
445	446	7.308109	GCGAGTGTTAGACTATGTATAGCTTCT	60.308	40.741	0.00	0.00	33.83	2.85
446	447	6.797995	GCGAGTGTTAGACTATGTATAGCTTC	59.202	42.308	0.00	0.00	33.83	3.86
447	448	6.294065	GGCGAGTGTTAGACTATGTATAGCTT	60.294	42.308	0.00	0.00	33.83	3.74
448	449	5.181622	GGCGAGTGTTAGACTATGTATAGCT	59.818	44.000	0.00	0.00	33.83	3.32
449	450	5.048921	TGGCGAGTGTTAGACTATGTATAGC	60.049	44.000	0.00	0.00	33.83	2.97
450	451	6.555812	TGGCGAGTGTTAGACTATGTATAG	57.444	41.667	0.00	0.00	33.83	1.31
451	452	6.947644	TTGGCGAGTGTTAGACTATGTATA	57.052	37.500	0.00	0.00	33.83	1.47
452	453	5.847111	TTGGCGAGTGTTAGACTATGTAT	57.153	39.130	0.00	0.00	33.83	2.29
453	454	5.451381	CCATTGGCGAGTGTTAGACTATGTA	60.451	44.000	0.00	0.00	33.83	2.29
454	455	4.433615	CATTGGCGAGTGTTAGACTATGT	58.566	43.478	0.00	0.00	33.83	2.29
455	456	3.804325	CCATTGGCGAGTGTTAGACTATG	59.196	47.826	0.00	0.00	33.83	2.23
456	457	3.741388	GCCATTGGCGAGTGTTAGACTAT	60.741	47.826	12.82	0.00	39.62	2.12
457	458	2.418197	GCCATTGGCGAGTGTTAGACTA	60.418	50.000	12.82	0.00	39.62	2.59
458	459	1.676014	GCCATTGGCGAGTGTTAGACT	60.676	52.381	12.82	0.00	39.62	3.24
459	460	0.727398	GCCATTGGCGAGTGTTAGAC	59.273	55.000	12.82	0.00	39.62	2.59
460	461	3.153024	GCCATTGGCGAGTGTTAGA	57.847	52.632	12.82	0.00	39.62	2.10
486	487	2.359850	TGGCCCTGATCGTGCAAC	60.360	61.111	0.00	0.00	0.00	4.17
529	530	2.328099	CCGCTGGGTTGCTCTTGAC	61.328	63.158	0.00	0.00	0.00	3.18
530	531	2.032528	CCGCTGGGTTGCTCTTGA	59.967	61.111	0.00	0.00	0.00	3.02
555	556	1.683385	GGTTCTTGGCAAGTGAAAGCT	59.317	47.619	25.39	0.00	0.00	3.74
556	557	1.269778	GGGTTCTTGGCAAGTGAAAGC	60.270	52.381	25.39	20.39	0.00	3.51
565	566	0.899717	GCTGATTGGGGTTCTTGGCA	60.900	55.000	0.00	0.00	0.00	4.92
567	568	1.315257	CGGCTGATTGGGGTTCTTGG	61.315	60.000	0.00	0.00	0.00	3.61
568	569	0.322456	TCGGCTGATTGGGGTTCTTG	60.322	55.000	0.00	0.00	0.00	3.02
709	710	4.271816	CTCTGATCGGACGGCGGG	62.272	72.222	13.24	0.00	0.00	6.13
878	896	1.153823	CCGGTGGACAAGTAGCTCG	60.154	63.158	0.00	0.00	0.00	5.03
892	910	2.677542	TGCTCCTATGTATCTCCGGT	57.322	50.000	0.00	0.00	0.00	5.28
951	971	4.335647	CTTCGCTGGCTGTGGGGT	62.336	66.667	5.07	0.00	0.00	4.95
992	1012	1.000145	CGTCGACGACATCTCTCTCA	59.000	55.000	33.35	0.00	43.02	3.27
1524	1553	4.115516	ACGAACGAGATTGATGATGAAGG	58.884	43.478	0.14	0.00	0.00	3.46
1529	1558	6.668541	AATTGAACGAACGAGATTGATGAT	57.331	33.333	0.14	0.00	0.00	2.45
1555	1587	2.027285	GCTAACAAAAACCATGGCCCAT	60.027	45.455	13.04	0.00	0.00	4.00
1559	1591	1.067693	GCGCTAACAAAAACCATGGC	58.932	50.000	13.04	0.00	0.00	4.40
1568	1600	2.499197	TCTGTGAATGGCGCTAACAAA	58.501	42.857	7.64	0.35	0.00	2.83
1569	1601	2.177394	TCTGTGAATGGCGCTAACAA	57.823	45.000	7.64	0.00	0.00	2.83
1570	1602	1.804151	GTTCTGTGAATGGCGCTAACA	59.196	47.619	7.64	1.29	0.00	2.41
1627	1659	2.041251	TCCTTGATGCGCATTGATCA	57.959	45.000	26.12	16.20	0.00	2.92
1628	1660	3.637998	ATTCCTTGATGCGCATTGATC	57.362	42.857	26.12	13.40	0.00	2.92
1629	1661	3.382227	TCAATTCCTTGATGCGCATTGAT	59.618	39.130	26.12	1.47	36.46	2.57
1631	1663	2.855963	GTCAATTCCTTGATGCGCATTG	59.144	45.455	26.12	16.58	43.08	2.82
1632	1664	2.492881	TGTCAATTCCTTGATGCGCATT	59.507	40.909	26.12	8.31	43.08	3.56
1635	1683	1.470098	ACTGTCAATTCCTTGATGCGC	59.530	47.619	0.00	0.00	43.08	6.09
1658	1706	2.158841	CGAACACCAAACGGAACATAGG	59.841	50.000	0.00	0.00	0.00	2.57
1661	1709	1.956297	TCGAACACCAAACGGAACAT	58.044	45.000	0.00	0.00	0.00	2.71
1709	1757	1.464376	TAGCTAGATGCCTCGTGCCC	61.464	60.000	0.00	0.00	44.23	5.36
1732	1780	2.622436	GTGTTGGTCACATCTCCTAGC	58.378	52.381	0.00	0.00	45.51	3.42
1849	1897	3.757248	ATGGATTCTCGGTGGCGCC	62.757	63.158	22.73	22.73	0.00	6.53
1857	1907	0.319900	CGTAGGGCCATGGATTCTCG	60.320	60.000	18.40	10.16	0.00	4.04
1919	1969	2.139917	CCACGTCGAAATTCCACAAGA	58.860	47.619	0.00	0.00	0.00	3.02
1920	1970	1.871039	ACCACGTCGAAATTCCACAAG	59.129	47.619	0.00	0.00	0.00	3.16
1921	1971	1.868498	GACCACGTCGAAATTCCACAA	59.132	47.619	0.00	0.00	0.00	3.33
1922	1972	1.202545	TGACCACGTCGAAATTCCACA	60.203	47.619	0.00	0.00	34.95	4.17
1923	1973	1.504359	TGACCACGTCGAAATTCCAC	58.496	50.000	0.00	0.00	34.95	4.02
1925	1975	2.140717	AGTTGACCACGTCGAAATTCC	58.859	47.619	0.00	0.00	34.95	3.01
1933	1987	4.970003	CAGAATTTCAAAGTTGACCACGTC	59.030	41.667	0.00	0.00	36.83	4.34
1934	1988	4.398044	ACAGAATTTCAAAGTTGACCACGT	59.602	37.500	0.00	0.00	36.83	4.49
1969	2027	7.276218	CCACGATGCAATATTGACAGAATTTTT	59.724	33.333	19.73	0.52	0.00	1.94
1971	2029	6.095300	TCCACGATGCAATATTGACAGAATTT	59.905	34.615	19.73	1.82	0.00	1.82
1972	2030	5.589855	TCCACGATGCAATATTGACAGAATT	59.410	36.000	19.73	2.16	0.00	2.17
1974	2032	4.512484	TCCACGATGCAATATTGACAGAA	58.488	39.130	19.73	0.00	0.00	3.02
1976	2034	4.274214	ACATCCACGATGCAATATTGACAG	59.726	41.667	19.73	8.96	43.15	3.51
1977	2035	4.198530	ACATCCACGATGCAATATTGACA	58.801	39.130	19.73	15.70	43.15	3.58
1978	2036	4.818534	ACATCCACGATGCAATATTGAC	57.181	40.909	19.73	10.72	43.15	3.18
1979	2037	8.791327	AATATACATCCACGATGCAATATTGA	57.209	30.769	19.73	4.96	43.15	2.57
2014	2072	5.653330	TGACAGTGCATCCATGATGTATTTT	59.347	36.000	0.00	0.00	41.60	1.82
2017	2075	4.426736	TGACAGTGCATCCATGATGTAT	57.573	40.909	0.00	0.00	41.60	2.29
2116	2194	3.128349	TCCAGTGTTTGCTTTCGTACTC	58.872	45.455	0.00	0.00	0.00	2.59
2122	2200	4.354587	CACTTTCTCCAGTGTTTGCTTTC	58.645	43.478	0.00	0.00	39.59	2.62
2274	2381	0.461961	GCAGAGCTCGTGGGTAGAAT	59.538	55.000	8.37	0.00	0.00	2.40
2275	2382	0.612174	AGCAGAGCTCGTGGGTAGAA	60.612	55.000	8.37	0.00	30.62	2.10
2276	2383	0.255033	TAGCAGAGCTCGTGGGTAGA	59.745	55.000	8.37	0.00	40.44	2.59
2277	2384	1.103803	TTAGCAGAGCTCGTGGGTAG	58.896	55.000	8.37	0.00	40.44	3.18
2278	2385	1.476891	CTTTAGCAGAGCTCGTGGGTA	59.523	52.381	8.37	9.26	40.44	3.69
2280	2387	1.086634	GCTTTAGCAGAGCTCGTGGG	61.087	60.000	8.37	0.62	40.44	4.61
2287	2394	7.859875	CCAAATTAAGATTAGCTTTAGCAGAGC	59.140	37.037	4.33	0.00	45.16	4.09
2288	2395	8.348507	CCCAAATTAAGATTAGCTTTAGCAGAG	58.651	37.037	4.33	0.00	45.16	3.35
2289	2396	7.285401	CCCCAAATTAAGATTAGCTTTAGCAGA	59.715	37.037	4.33	0.00	45.16	4.26
2290	2397	7.285401	TCCCCAAATTAAGATTAGCTTTAGCAG	59.715	37.037	4.33	0.00	45.16	4.24
2291	2398	7.122715	TCCCCAAATTAAGATTAGCTTTAGCA	58.877	34.615	4.33	0.00	45.16	3.49
2293	2400	7.780271	ACCTCCCCAAATTAAGATTAGCTTTAG	59.220	37.037	0.00	0.00	38.05	1.85
2294	2401	7.648770	ACCTCCCCAAATTAAGATTAGCTTTA	58.351	34.615	0.00	0.00	38.05	1.85
2295	2402	6.503041	ACCTCCCCAAATTAAGATTAGCTTT	58.497	36.000	0.00	0.00	38.05	3.51
2301	2408	7.127186	CCCAAATTACCTCCCCAAATTAAGATT	59.873	37.037	0.00	0.00	0.00	2.40
2302	2409	6.615316	CCCAAATTACCTCCCCAAATTAAGAT	59.385	38.462	0.00	0.00	0.00	2.40
2304	2411	5.724370	ACCCAAATTACCTCCCCAAATTAAG	59.276	40.000	0.00	0.00	0.00	1.85
2305	2412	5.666738	ACCCAAATTACCTCCCCAAATTAA	58.333	37.500	0.00	0.00	0.00	1.40
2306	2413	5.292550	ACCCAAATTACCTCCCCAAATTA	57.707	39.130	0.00	0.00	0.00	1.40
2307	2414	4.154802	ACCCAAATTACCTCCCCAAATT	57.845	40.909	0.00	0.00	0.00	1.82
2308	2415	3.864556	ACCCAAATTACCTCCCCAAAT	57.135	42.857	0.00	0.00	0.00	2.32
2309	2416	3.639625	AACCCAAATTACCTCCCCAAA	57.360	42.857	0.00	0.00	0.00	3.28
2310	2417	3.663632	AGTAACCCAAATTACCTCCCCAA	59.336	43.478	0.00	0.00	35.95	4.12
2311	2418	3.270812	AGTAACCCAAATTACCTCCCCA	58.729	45.455	0.00	0.00	35.95	4.96
2312	2419	4.326600	AAGTAACCCAAATTACCTCCCC	57.673	45.455	0.00	0.00	35.95	4.81
2314	2421	6.944290	AGTTGTAAGTAACCCAAATTACCTCC	59.056	38.462	0.00	0.00	35.95	4.30
2315	2422	7.991084	AGTTGTAAGTAACCCAAATTACCTC	57.009	36.000	0.00	0.00	35.95	3.85
2316	2423	8.635328	CAAAGTTGTAAGTAACCCAAATTACCT	58.365	33.333	0.00	0.00	35.95	3.08
2317	2424	7.868922	CCAAAGTTGTAAGTAACCCAAATTACC	59.131	37.037	0.00	0.00	35.95	2.85
2318	2425	8.631797	TCCAAAGTTGTAAGTAACCCAAATTAC	58.368	33.333	0.00	0.00	35.62	1.89
2332	2468	4.220382	CCTGCATTCCATCCAAAGTTGTAA	59.780	41.667	0.00	0.00	0.00	2.41
2333	2469	3.763360	CCTGCATTCCATCCAAAGTTGTA	59.237	43.478	0.00	0.00	0.00	2.41
2335	2471	2.093869	CCCTGCATTCCATCCAAAGTTG	60.094	50.000	0.00	0.00	0.00	3.16
2336	2472	2.181975	CCCTGCATTCCATCCAAAGTT	58.818	47.619	0.00	0.00	0.00	2.66
2337	2473	1.856629	CCCTGCATTCCATCCAAAGT	58.143	50.000	0.00	0.00	0.00	2.66
2338	2474	0.462789	GCCCTGCATTCCATCCAAAG	59.537	55.000	0.00	0.00	0.00	2.77
2339	2475	1.321805	CGCCCTGCATTCCATCCAAA	61.322	55.000	0.00	0.00	0.00	3.28
2340	2476	1.753848	CGCCCTGCATTCCATCCAA	60.754	57.895	0.00	0.00	0.00	3.53
2341	2477	2.124193	CGCCCTGCATTCCATCCA	60.124	61.111	0.00	0.00	0.00	3.41
2342	2478	3.599704	GCGCCCTGCATTCCATCC	61.600	66.667	0.00	0.00	45.45	3.51
2580	2716	4.899239	GAGATGCCCGCCCAGTCG	62.899	72.222	0.00	0.00	0.00	4.18
2757	2893	1.218316	GTACTTCTGGCCCGTGGAG	59.782	63.158	0.00	0.00	0.00	3.86
2758	2894	2.642254	CGTACTTCTGGCCCGTGGA	61.642	63.158	0.00	0.00	0.00	4.02
2760	2896	1.445582	GTCGTACTTCTGGCCCGTG	60.446	63.158	0.00	0.00	0.00	4.94
2761	2897	1.904865	TGTCGTACTTCTGGCCCGT	60.905	57.895	0.00	0.00	0.00	5.28
2797	2933	2.087009	CGTTGAGGTCGAAGTCGGC	61.087	63.158	0.11	0.00	44.28	5.54
2798	2934	1.002250	CACGTTGAGGTCGAAGTCGG	61.002	60.000	0.11	0.00	40.29	4.79
3195	3331	5.924475	TGAAGAACGGAAGAAAGATGTTC	57.076	39.130	0.00	0.00	39.28	3.18
3196	3332	5.997746	TGATGAAGAACGGAAGAAAGATGTT	59.002	36.000	0.00	0.00	0.00	2.71
3197	3333	5.551233	TGATGAAGAACGGAAGAAAGATGT	58.449	37.500	0.00	0.00	0.00	3.06
3200	3336	5.215252	ACTGATGAAGAACGGAAGAAAGA	57.785	39.130	0.00	0.00	0.00	2.52
3201	3337	7.459486	CATTACTGATGAAGAACGGAAGAAAG	58.541	38.462	0.00	0.00	38.03	2.62
3202	3338	6.128282	GCATTACTGATGAAGAACGGAAGAAA	60.128	38.462	0.00	0.00	38.03	2.52
3203	3339	5.351465	GCATTACTGATGAAGAACGGAAGAA	59.649	40.000	0.00	0.00	38.03	2.52
3204	3340	4.870426	GCATTACTGATGAAGAACGGAAGA	59.130	41.667	0.00	0.00	38.03	2.87
3205	3341	4.872691	AGCATTACTGATGAAGAACGGAAG	59.127	41.667	0.00	0.00	38.03	3.46
3207	3343	4.471904	AGCATTACTGATGAAGAACGGA	57.528	40.909	0.00	0.00	38.03	4.69
3208	3344	5.109210	TGTAGCATTACTGATGAAGAACGG	58.891	41.667	0.00	0.00	38.03	4.44
3209	3345	6.647212	TTGTAGCATTACTGATGAAGAACG	57.353	37.500	0.00	0.00	38.03	3.95
3210	3346	9.846248	AAAATTGTAGCATTACTGATGAAGAAC	57.154	29.630	0.00	0.00	38.03	3.01
3214	3350	8.306038	AGCAAAAATTGTAGCATTACTGATGAA	58.694	29.630	0.00	0.00	38.03	2.57
3262	3419	1.155042	GCAGATCAGGCGATGAATCC	58.845	55.000	0.00	0.00	42.53	3.01
3308	3465	2.176273	GCCGATCATGAACTGCGCT	61.176	57.895	9.73	0.00	0.00	5.92
3446	3603	2.480555	GTGTACATGCAGCGTGGC	59.519	61.111	19.05	11.33	0.00	5.01
3514	3677	1.206610	AGTTCAGCGAGTGATGAGCAT	59.793	47.619	0.59	0.00	43.23	3.79
3680	3850	0.389426	CGAAGGTGACCCGGTACTTG	60.389	60.000	0.00	0.00	35.12	3.16
3756	3926	0.107081	CACACCAGGTTCCGGTACAA	59.893	55.000	13.64	0.00	34.02	2.41
4281	4457	0.882927	GCGGCTGCATCGGGTAATTA	60.883	55.000	14.08	0.00	42.15	1.40
4388	4569	5.163703	GGATGTGATCTGCCTACGAGTATAG	60.164	48.000	0.00	0.00	0.00	1.31
4396	4581	3.133721	ACTGAAGGATGTGATCTGCCTAC	59.866	47.826	0.00	0.00	0.00	3.18
4403	4588	7.492524	TCACACTAATACTGAAGGATGTGATC	58.507	38.462	0.00	0.00	40.05	2.92
4410	4595	6.667848	TGAATCCTCACACTAATACTGAAGGA	59.332	38.462	0.00	0.00	0.00	3.36
4429	4614	6.183360	TGCATTGACCATTTCTATGTGAATCC	60.183	38.462	0.00	0.00	39.07	3.01
4432	4617	6.587206	TTGCATTGACCATTTCTATGTGAA	57.413	33.333	0.00	0.00	39.07	3.18
4438	4624	4.618927	GCTGCTTTGCATTGACCATTTCTA	60.619	41.667	0.00	0.00	38.13	2.10
4464	4650	5.212532	TGTATCCTTGCAAATTGCTTTGT	57.787	34.783	19.34	4.39	45.31	2.83
4469	4655	4.454728	TTCCTGTATCCTTGCAAATTGC	57.545	40.909	11.58	11.58	45.29	3.56
4474	4660	4.941263	GTGTGTATTCCTGTATCCTTGCAA	59.059	41.667	0.00	0.00	0.00	4.08
4475	4661	4.019771	TGTGTGTATTCCTGTATCCTTGCA	60.020	41.667	0.00	0.00	0.00	4.08
4476	4662	4.513442	TGTGTGTATTCCTGTATCCTTGC	58.487	43.478	0.00	0.00	0.00	4.01
4477	4663	7.630242	AAATGTGTGTATTCCTGTATCCTTG	57.370	36.000	0.00	0.00	0.00	3.61
4481	4667	8.039603	TGTCAAAATGTGTGTATTCCTGTATC	57.960	34.615	0.00	0.00	0.00	2.24
4546	4749	3.553096	CCGATAGCCTGATAGGTGACAAC	60.553	52.174	0.00	0.00	37.80	3.32
4567	4770	1.214062	CCTCTCACGTCACTCTGCC	59.786	63.158	0.00	0.00	0.00	4.85
4578	4781	1.915769	ACAGGTGCCTCCCTCTCAC	60.916	63.158	0.00	0.00	36.75	3.51
4746	4953	3.706594	GAGTTCTGACAGGGATGGACATA	59.293	47.826	1.81	0.00	0.00	2.29
4835	5042	1.758440	AAGAGCGAGGAACAGTGGCA	61.758	55.000	0.00	0.00	0.00	4.92
4839	5046	1.179814	ACGGAAGAGCGAGGAACAGT	61.180	55.000	0.00	0.00	0.00	3.55
4851	5058	0.172578	CGGCAGTGATGTACGGAAGA	59.827	55.000	0.00	0.00	0.00	2.87
4854	5061	2.183300	GCGGCAGTGATGTACGGA	59.817	61.111	0.00	0.00	0.00	4.69
4896	5103	2.746803	GGCAATGTACGGCGTGTCC	61.747	63.158	24.86	10.96	0.00	4.02
4897	5104	2.782615	GGCAATGTACGGCGTGTC	59.217	61.111	24.86	15.90	0.00	3.67
4898	5105	3.115892	CGGCAATGTACGGCGTGT	61.116	61.111	24.86	5.62	46.26	4.49
4911	5124	2.659016	CTGCTTGACTCCTCGGCA	59.341	61.111	0.00	0.00	0.00	5.69
4986	5199	2.233654	CGCCTTGAAGATCGGAGCG	61.234	63.158	0.00	0.00	35.82	5.03
4989	5202	1.207089	ACATTCGCCTTGAAGATCGGA	59.793	47.619	0.00	0.00	40.65	4.55
5000	5213	3.334583	TGAAGCTCTTAACATTCGCCT	57.665	42.857	0.00	0.00	0.00	5.52
5082	5295	1.967066	GTGGAGGATCAGATCGGATGT	59.033	52.381	13.38	0.12	36.25	3.06
5085	5298	0.261696	TGGTGGAGGATCAGATCGGA	59.738	55.000	4.23	0.00	36.25	4.55
5145	5358	2.515398	CCCGGCATGCAATCCCTA	59.485	61.111	21.36	0.00	0.00	3.53
5152	5365	4.881440	GATCCTGCCCGGCATGCA	62.881	66.667	21.36	0.00	38.13	3.96

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.