Multiple sequence alignment - TraesCS5A01G390800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G390800 chr5A 100.000 3575 0 0 1 3575 586145215 586141641 0.000000e+00 6602
1 TraesCS5A01G390800 chr5D 95.164 3619 107 35 1 3575 465714821 465711227 0.000000e+00 5651
2 TraesCS5A01G390800 chr5B 94.890 3601 112 35 1 3558 572947174 572943603 0.000000e+00 5565
3 TraesCS5A01G390800 chr7D 76.875 480 58 31 1246 1708 58140942 58141385 4.650000e-54 222
4 TraesCS5A01G390800 chr1A 74.346 573 82 42 1151 1708 465248713 465248191 2.190000e-42 183
5 TraesCS5A01G390800 chr2D 83.893 149 19 3 1819 1964 565858161 565858015 1.730000e-28 137
6 TraesCS5A01G390800 chr4A 83.562 146 22 1 1819 1964 37899831 37899688 6.230000e-28 135
7 TraesCS5A01G390800 chr2A 83.673 147 21 2 1819 1964 364404220 364404364 6.230000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G390800 chr5A 586141641 586145215 3574 True 6602 6602 100.000 1 3575 1 chr5A.!!$R1 3574
1 TraesCS5A01G390800 chr5D 465711227 465714821 3594 True 5651 5651 95.164 1 3575 1 chr5D.!!$R1 3574
2 TraesCS5A01G390800 chr5B 572943603 572947174 3571 True 5565 5565 94.890 1 3558 1 chr5B.!!$R1 3557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
784 793 0.37337 TATTGCAGTGCGCGCTTTAG 59.627 50.0 33.29 19.55 46.97 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2586 2637 0.179059 TGCGTCTTCCAGTGCTTTGA 60.179 50.0 0.0 0.0 0.0 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
96 97 3.967326 CTCCTGGTTAGATGGTGATGGTA 59.033 47.826 0.00 0.00 0.00 3.25
157 158 1.980765 AGAGCAGTTGAATCAGGGACA 59.019 47.619 0.00 0.00 0.00 4.02
237 238 5.973565 GGTGTCTGAACAAAACAGATTTCAG 59.026 40.000 0.00 4.18 44.41 3.02
419 420 9.309516 CAAAGCTAATAAGTTCCAAGTATACGA 57.690 33.333 0.00 0.00 0.00 3.43
432 433 5.248087 CAAGTATACGAAATCACTTGCGTG 58.752 41.667 1.71 0.00 40.82 5.34
454 455 3.518590 GTTCCACGTACCAAGGTATCAG 58.481 50.000 1.74 0.75 32.82 2.90
460 461 3.194968 ACGTACCAAGGTATCAGAGTTGG 59.805 47.826 1.74 0.00 44.34 3.77
572 581 0.398696 AACTACGTGCACCCATCCAA 59.601 50.000 12.15 0.00 0.00 3.53
573 582 0.398696 ACTACGTGCACCCATCCAAA 59.601 50.000 12.15 0.00 0.00 3.28
574 583 1.202830 ACTACGTGCACCCATCCAAAA 60.203 47.619 12.15 0.00 0.00 2.44
575 584 2.091541 CTACGTGCACCCATCCAAAAT 58.908 47.619 12.15 0.00 0.00 1.82
576 585 2.208132 ACGTGCACCCATCCAAAATA 57.792 45.000 12.15 0.00 0.00 1.40
577 586 2.733956 ACGTGCACCCATCCAAAATAT 58.266 42.857 12.15 0.00 0.00 1.28
578 587 2.687935 ACGTGCACCCATCCAAAATATC 59.312 45.455 12.15 0.00 0.00 1.63
579 588 2.687425 CGTGCACCCATCCAAAATATCA 59.313 45.455 12.15 0.00 0.00 2.15
636 645 7.920682 ACAAATTTTGACAGGAAACATCTACAC 59.079 33.333 15.81 0.00 0.00 2.90
741 750 9.295825 TGTCTTACATCACTGGTAATCAATTTT 57.704 29.630 0.00 0.00 30.93 1.82
784 793 0.373370 TATTGCAGTGCGCGCTTTAG 59.627 50.000 33.29 19.55 46.97 1.85
824 833 5.467063 CAGAAGTGTCCAGGAAGTAAAGAAC 59.533 44.000 0.00 0.00 0.00 3.01
879 888 2.000048 AGTTAGCCCATCCTTTTCCCA 59.000 47.619 0.00 0.00 0.00 4.37
913 922 5.782893 ACAGAGACTGAGCCTTATATGAC 57.217 43.478 5.76 0.00 35.18 3.06
1105 1114 9.733556 TGCTACTTTATTTTATCCTTCACTTCA 57.266 29.630 0.00 0.00 0.00 3.02
1115 1124 3.963129 TCCTTCACTTCACCACAGTTTT 58.037 40.909 0.00 0.00 0.00 2.43
1189 1198 9.683069 CTCATGCGCTATTTATCCTTTATTTTT 57.317 29.630 9.73 0.00 0.00 1.94
1412 1423 6.382869 AGATATGCAGACTTTAAACCATGC 57.617 37.500 0.00 6.76 0.00 4.06
1444 1455 2.124320 GGGAGCCGCTATTGCCAA 60.124 61.111 0.00 0.00 35.36 4.52
1592 1603 2.936919 TTCATGGGGTGCTATGCTAG 57.063 50.000 0.00 0.00 0.00 3.42
1726 1737 9.178758 GTCTCCCAGATAAATAAATGAAACACT 57.821 33.333 0.00 0.00 0.00 3.55
1740 1751 5.195001 TGAAACACTGAACCATTTAAGGC 57.805 39.130 0.00 0.00 0.00 4.35
1801 1812 0.392193 ATCGCAACTGGGAGAAGCAG 60.392 55.000 2.77 0.00 40.39 4.24
1903 1914 6.648310 CAGATTGTACGATGATTGAGCCTAAT 59.352 38.462 0.00 0.00 0.00 1.73
1919 1930 9.474313 TTGAGCCTAATAAATCATGTTACCTTT 57.526 29.630 0.00 0.00 0.00 3.11
2046 2057 4.390909 CGACCTAAACCCAAGTATGTTCAC 59.609 45.833 0.00 0.00 0.00 3.18
2099 2110 4.365514 TGCAGGTTGAAATTCCACTAGA 57.634 40.909 0.00 0.00 0.00 2.43
2127 2170 0.664761 ACATGCAGAGCACAACACAC 59.335 50.000 0.00 0.00 43.04 3.82
2128 2171 0.664224 CATGCAGAGCACAACACACA 59.336 50.000 0.00 0.00 43.04 3.72
2142 2185 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2146 2189 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2155 2198 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2156 2199 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2160 2203 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2164 2207 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2165 2208 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2167 2210 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2168 2211 0.167908 CACACACACACACACACACC 59.832 55.000 0.00 0.00 0.00 4.16
2169 2212 0.250510 ACACACACACACACACACCA 60.251 50.000 0.00 0.00 0.00 4.17
2170 2213 0.167908 CACACACACACACACACCAC 59.832 55.000 0.00 0.00 0.00 4.16
2172 2215 0.877743 CACACACACACACACCACAA 59.122 50.000 0.00 0.00 0.00 3.33
2173 2216 1.135717 CACACACACACACACCACAAG 60.136 52.381 0.00 0.00 0.00 3.16
2174 2217 0.179166 CACACACACACACCACAAGC 60.179 55.000 0.00 0.00 0.00 4.01
2176 2219 1.752694 ACACACACACCACAAGCCC 60.753 57.895 0.00 0.00 0.00 5.19
2177 2220 2.515991 ACACACACCACAAGCCCG 60.516 61.111 0.00 0.00 0.00 6.13
2178 2221 3.964875 CACACACCACAAGCCCGC 61.965 66.667 0.00 0.00 0.00 6.13
2179 2222 4.497984 ACACACCACAAGCCCGCA 62.498 61.111 0.00 0.00 0.00 5.69
2181 2224 4.497984 ACACCACAAGCCCGCACA 62.498 61.111 0.00 0.00 0.00 4.57
2182 2225 3.964875 CACCACAAGCCCGCACAC 61.965 66.667 0.00 0.00 0.00 3.82
2183 2226 4.497984 ACCACAAGCCCGCACACA 62.498 61.111 0.00 0.00 0.00 3.72
2184 2227 3.964875 CCACAAGCCCGCACACAC 61.965 66.667 0.00 0.00 0.00 3.82
2249 2296 8.724113 ATAAGTAACTTATCTTACTCCCCCTC 57.276 38.462 0.00 0.00 36.17 4.30
2519 2570 4.025040 TCTCAGCCATGTCATTCACTTT 57.975 40.909 0.00 0.00 0.00 2.66
2523 2574 3.005050 CAGCCATGTCATTCACTTTGTGT 59.995 43.478 0.00 0.00 34.79 3.72
2525 2576 4.099881 AGCCATGTCATTCACTTTGTGTTT 59.900 37.500 0.00 0.00 34.79 2.83
2569 2620 9.257651 GTAACTCATGTAACTTTGAAGTAGTGT 57.742 33.333 0.00 0.00 38.57 3.55
2571 2622 7.727181 ACTCATGTAACTTTGAAGTAGTGTCT 58.273 34.615 0.00 0.00 38.57 3.41
2586 2637 5.655532 AGTAGTGTCTTGATATAACGGTGGT 59.344 40.000 0.00 0.00 0.00 4.16
2588 2639 4.464951 AGTGTCTTGATATAACGGTGGTCA 59.535 41.667 0.00 0.00 0.00 4.02
2708 2759 3.495100 GGATGCCATTACTCGAATCAGGT 60.495 47.826 0.00 0.00 0.00 4.00
2721 2772 3.209410 GAATCAGGTGGGCAATGTCTAG 58.791 50.000 0.00 0.00 0.00 2.43
2752 2803 7.094805 GCTCCATACTTCAAAATGTGTCAACTA 60.095 37.037 0.00 0.00 0.00 2.24
2763 2814 7.750229 AAATGTGTCAACTATGTGTCTCATT 57.250 32.000 0.00 0.00 37.91 2.57
2796 2847 9.390795 CAGACTCTTTTCAATTTTAGTCATGTG 57.609 33.333 0.00 0.00 36.63 3.21
2825 2876 7.593273 TGGTTTTGTATCAATAAAAGTTGAGCG 59.407 33.333 0.00 0.00 41.05 5.03
2826 2877 7.061789 GGTTTTGTATCAATAAAAGTTGAGCGG 59.938 37.037 0.00 0.00 41.05 5.52
2928 2979 6.642540 TCTGACACTTATAGCGCAAATAGATG 59.357 38.462 11.47 11.09 0.00 2.90
3080 3137 2.172082 TGGATGGAAGCAGAGAGATTGG 59.828 50.000 0.00 0.00 0.00 3.16
3110 3171 0.668401 GCTGACCATGTTTGCAAGGC 60.668 55.000 0.00 0.00 36.99 4.35
3113 3174 0.037975 GACCATGTTTGCAAGGCCAG 60.038 55.000 5.01 0.00 36.99 4.85
3130 3191 0.461548 CAGCCACGAGAGCCAAGATA 59.538 55.000 0.00 0.00 0.00 1.98
3139 3200 3.004419 CGAGAGCCAAGATACCGTGATTA 59.996 47.826 0.00 0.00 0.00 1.75
3240 3301 3.287867 AGCAGGATGTACAAATGAGGG 57.712 47.619 0.00 0.00 39.31 4.30
3272 3333 8.887036 AAACATCAAGGGAACTGTTTTATTTC 57.113 30.769 0.00 0.00 42.68 2.17
3340 3401 5.059161 GTGCAATCATGACCTAATAGAGCA 58.941 41.667 0.00 0.00 0.00 4.26
3363 3424 6.373779 CAACTGATACAAAGCCTTGTGTAAG 58.626 40.000 11.02 9.13 45.53 2.34
3559 3621 1.520590 CATTCCAAACAACGCAAACGG 59.479 47.619 0.00 0.00 46.04 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 158 1.439543 AACCTTCACCTCTGCTTCCT 58.560 50.000 0.00 0.00 0.00 3.36
237 238 4.212143 TGCCATATATGACATCTGCCTC 57.788 45.455 14.54 0.00 0.00 4.70
432 433 2.234414 TGATACCTTGGTACGTGGAACC 59.766 50.000 0.00 0.00 37.53 3.62
454 455 2.421424 CAGGCTTTCAGCATACCAACTC 59.579 50.000 0.00 0.00 44.75 3.01
460 461 7.031226 TGATATTTTCAGGCTTTCAGCATAC 57.969 36.000 0.00 0.00 44.75 2.39
578 587 9.373750 CGTTGCAATTTCTATGTGTTATATCTG 57.626 33.333 0.59 0.00 0.00 2.90
579 588 8.070171 GCGTTGCAATTTCTATGTGTTATATCT 58.930 33.333 0.59 0.00 0.00 1.98
595 604 0.179089 TTTGTGCTGGCGTTGCAATT 60.179 45.000 0.59 0.00 42.41 2.32
660 669 4.923893 TCTGCAATGAAACAAGTGAACAG 58.076 39.130 0.00 0.00 0.00 3.16
775 784 3.788434 TCTTTTTCTGACTAAAGCGCG 57.212 42.857 0.00 0.00 32.67 6.86
784 793 7.307692 GGACACTTCTGAGAATCTTTTTCTGAC 60.308 40.741 0.00 0.00 34.92 3.51
913 922 5.530915 TGGAAATCTACAAGTTGTGTGAAGG 59.469 40.000 18.90 2.41 41.89 3.46
1066 1075 2.611225 AGTAGCAGTATCAGCCTTGC 57.389 50.000 0.00 0.00 36.83 4.01
1105 1114 0.395586 TGCTGAGCCAAAACTGTGGT 60.396 50.000 0.23 0.00 41.12 4.16
1115 1124 2.877097 TTTCATACCTTGCTGAGCCA 57.123 45.000 0.23 0.00 0.00 4.75
1142 1151 2.417787 GCATTTTGGAATCAGGAGCCAC 60.418 50.000 0.00 0.00 0.00 5.01
1444 1455 6.127897 GCTTATGTAACTTTGAGCAGTGGATT 60.128 38.462 0.00 0.00 0.00 3.01
1504 1515 6.299141 AGTTTCTGGTATCTCAAGAGCAAAA 58.701 36.000 0.00 0.00 0.00 2.44
1505 1516 5.869579 AGTTTCTGGTATCTCAAGAGCAAA 58.130 37.500 0.00 0.00 0.00 3.68
1523 1534 6.076981 TGATTTCTCAGGCTCAAAAGTTTC 57.923 37.500 0.00 0.00 0.00 2.78
1592 1603 6.803154 AGGTTACAGTTGACTTTATCTTGC 57.197 37.500 0.00 0.00 0.00 4.01
1698 1709 9.699410 TGTTTCATTTATTTATCTGGGAGACAT 57.301 29.630 0.00 0.00 0.00 3.06
1715 1726 6.705825 GCCTTAAATGGTTCAGTGTTTCATTT 59.294 34.615 17.29 17.29 40.03 2.32
1726 1737 6.662865 TCTTCAAATGCCTTAAATGGTTCA 57.337 33.333 0.00 0.00 0.00 3.18
1801 1812 1.303309 GCTCATCCACTATGCACCAC 58.697 55.000 0.00 0.00 35.38 4.16
1812 1823 2.040145 TCATCTGGTGTTTGCTCATCCA 59.960 45.455 0.00 0.00 0.00 3.41
1903 1914 9.747898 ACTGTATTGGAAAGGTAACATGATTTA 57.252 29.630 0.00 0.00 41.41 1.40
1919 1930 2.335681 TGGTCCCTGACTGTATTGGA 57.664 50.000 0.00 0.00 32.47 3.53
2032 2043 5.048294 GGTTTAGGTTGTGAACATACTTGGG 60.048 44.000 0.00 0.00 0.00 4.12
2046 2057 5.192927 TGCTCCTAATGATGGTTTAGGTTG 58.807 41.667 8.82 5.57 44.07 3.77
2099 2110 3.570975 TGTGCTCTGCATGTTTGATCTTT 59.429 39.130 0.00 0.00 41.91 2.52
2127 2170 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2128 2171 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2142 2185 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2146 2189 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2155 2198 0.179166 GCTTGTGGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
2156 2199 1.312371 GGCTTGTGGTGTGTGTGTGT 61.312 55.000 0.00 0.00 0.00 3.72
2160 2203 2.515991 CGGGCTTGTGGTGTGTGT 60.516 61.111 0.00 0.00 0.00 3.72
2164 2207 4.497984 TGTGCGGGCTTGTGGTGT 62.498 61.111 0.00 0.00 0.00 4.16
2165 2208 3.964875 GTGTGCGGGCTTGTGGTG 61.965 66.667 0.00 0.00 0.00 4.17
2167 2210 3.964875 GTGTGTGCGGGCTTGTGG 61.965 66.667 0.00 0.00 0.00 4.17
2168 2211 4.312231 CGTGTGTGCGGGCTTGTG 62.312 66.667 0.00 0.00 0.00 3.33
2183 2226 2.420642 TCTCTAAGAGTACACGTGCGT 58.579 47.619 17.22 0.00 0.00 5.24
2184 2227 3.466712 TTCTCTAAGAGTACACGTGCG 57.533 47.619 17.22 0.00 0.00 5.34
2186 2229 7.759465 TCCTAAATTCTCTAAGAGTACACGTG 58.241 38.462 15.48 15.48 0.00 4.49
2228 2275 6.997942 ATGAGGGGGAGTAAGATAAGTTAC 57.002 41.667 0.00 0.00 33.72 2.50
2272 2319 9.260002 CCTAAAATGTTTGACTAGCACAAATTT 57.740 29.630 15.36 13.95 39.01 1.82
2432 2483 3.008704 AGCCTAGACCATTTACACGGTTT 59.991 43.478 0.00 0.00 34.99 3.27
2569 2620 4.873827 GCTTTGACCACCGTTATATCAAGA 59.126 41.667 0.00 0.00 31.34 3.02
2571 2622 4.393680 GTGCTTTGACCACCGTTATATCAA 59.606 41.667 0.00 0.00 0.00 2.57
2586 2637 0.179059 TGCGTCTTCCAGTGCTTTGA 60.179 50.000 0.00 0.00 0.00 2.69
2588 2639 0.877071 CATGCGTCTTCCAGTGCTTT 59.123 50.000 0.00 0.00 0.00 3.51
2721 2772 7.538575 ACACATTTTGAAGTATGGAGCAATAC 58.461 34.615 0.00 0.00 33.90 1.89
2752 2803 7.619050 AGAGTCTGATTACAAATGAGACACAT 58.381 34.615 17.55 1.95 41.45 3.21
2796 2847 7.870445 TCAACTTTTATTGATACAAAACCAGGC 59.130 33.333 0.00 0.00 33.62 4.85
2825 2876 6.127281 CCCCTTTACACACCATATAAAAACCC 60.127 42.308 0.00 0.00 0.00 4.11
2826 2877 6.438108 ACCCCTTTACACACCATATAAAAACC 59.562 38.462 0.00 0.00 0.00 3.27
2860 2911 6.619446 GCGCTTGATTATATCCTAGCTGTTTG 60.619 42.308 0.00 0.00 35.22 2.93
2913 2964 6.805271 GCAATGATTTCATCTATTTGCGCTAT 59.195 34.615 9.73 4.77 35.10 2.97
3056 3113 3.043465 TCTCTCTGCTTCCATCCATCT 57.957 47.619 0.00 0.00 0.00 2.90
3080 3137 2.490903 ACATGGTCAGCTTGATTTCTGC 59.509 45.455 0.00 0.00 0.00 4.26
3110 3171 2.249413 ATCTTGGCTCTCGTGGCTGG 62.249 60.000 0.00 0.00 0.00 4.85
3113 3174 0.530870 GGTATCTTGGCTCTCGTGGC 60.531 60.000 0.00 0.00 0.00 5.01
3130 3191 8.405531 CAATACTTTTTCCATGATAATCACGGT 58.594 33.333 0.00 0.00 30.56 4.83
3240 3301 4.023707 CAGTTCCCTTGATGTTTCACACTC 60.024 45.833 0.00 0.00 0.00 3.51
3272 3333 9.653287 TCTCGTGGCCTTTATAGATAATAATTG 57.347 33.333 3.32 0.00 30.11 2.32
3280 3341 5.871396 TCTTTCTCGTGGCCTTTATAGAT 57.129 39.130 3.32 0.00 0.00 1.98
3285 3346 3.244422 ACACATCTTTCTCGTGGCCTTTA 60.244 43.478 3.32 0.00 34.91 1.85
3287 3348 1.072331 ACACATCTTTCTCGTGGCCTT 59.928 47.619 3.32 0.00 34.91 4.35
3288 3349 0.687354 ACACATCTTTCTCGTGGCCT 59.313 50.000 3.32 0.00 34.91 5.19
3289 3350 0.798776 CACACATCTTTCTCGTGGCC 59.201 55.000 0.00 0.00 34.91 5.36
3290 3351 0.166814 GCACACATCTTTCTCGTGGC 59.833 55.000 0.00 0.00 34.91 5.01
3291 3352 0.798776 GGCACACATCTTTCTCGTGG 59.201 55.000 0.00 0.00 34.91 4.94
3319 3380 5.762218 AGTTGCTCTATTAGGTCATGATTGC 59.238 40.000 0.00 0.00 0.00 3.56
3340 3401 5.473504 CCTTACACAAGGCTTTGTATCAGTT 59.526 40.000 14.45 0.00 45.53 3.16
3363 3424 4.460948 TCGGGTGAAAACTATGTCTACC 57.539 45.455 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.