Multiple sequence alignment - TraesCS5A01G390100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G390100 chr5A 100.000 2468 0 0 1 2468 585486565 585489032 0.000000e+00 4558
1 TraesCS5A01G390100 chr5A 96.285 673 23 2 1 672 653659837 653659166 0.000000e+00 1103
2 TraesCS5A01G390100 chr5A 100.000 62 0 0 2383 2444 585488886 585488947 5.580000e-22 115
3 TraesCS5A01G390100 chr5A 100.000 62 0 0 2322 2383 585488947 585489008 5.580000e-22 115
4 TraesCS5A01G390100 chr5D 85.860 1570 97 69 666 2156 465198374 465199897 0.000000e+00 1554
5 TraesCS5A01G390100 chr5B 89.782 1057 40 27 708 1739 572544547 572545560 0.000000e+00 1291
6 TraesCS5A01G390100 chr5B 96.847 666 18 3 1 666 686832093 686832755 0.000000e+00 1110
7 TraesCS5A01G390100 chr5B 96.702 667 19 3 1 665 63252263 63251598 0.000000e+00 1107
8 TraesCS5A01G390100 chr5B 80.583 412 44 18 1789 2182 572545578 572545971 4.020000e-73 285
9 TraesCS5A01G390100 chr2B 96.313 678 23 2 1 676 699182261 699181584 0.000000e+00 1112
10 TraesCS5A01G390100 chr2B 96.572 671 20 3 1 670 640687805 640687137 0.000000e+00 1109
11 TraesCS5A01G390100 chr3A 96.577 672 20 3 1 670 378337648 378336978 0.000000e+00 1110
12 TraesCS5A01G390100 chr3B 96.285 673 21 1 1 669 171120244 171120916 0.000000e+00 1101
13 TraesCS5A01G390100 chr3B 96.280 672 23 2 1 670 247809139 247809810 0.000000e+00 1101
14 TraesCS5A01G390100 chr6B 95.620 685 28 2 1 683 646915863 646915179 0.000000e+00 1098


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G390100 chr5A 585486565 585489032 2467 False 1596 4558 100.0000 1 2468 3 chr5A.!!$F1 2467
1 TraesCS5A01G390100 chr5A 653659166 653659837 671 True 1103 1103 96.2850 1 672 1 chr5A.!!$R1 671
2 TraesCS5A01G390100 chr5D 465198374 465199897 1523 False 1554 1554 85.8600 666 2156 1 chr5D.!!$F1 1490
3 TraesCS5A01G390100 chr5B 686832093 686832755 662 False 1110 1110 96.8470 1 666 1 chr5B.!!$F1 665
4 TraesCS5A01G390100 chr5B 63251598 63252263 665 True 1107 1107 96.7020 1 665 1 chr5B.!!$R1 664
5 TraesCS5A01G390100 chr5B 572544547 572545971 1424 False 788 1291 85.1825 708 2182 2 chr5B.!!$F2 1474
6 TraesCS5A01G390100 chr2B 699181584 699182261 677 True 1112 1112 96.3130 1 676 1 chr2B.!!$R2 675
7 TraesCS5A01G390100 chr2B 640687137 640687805 668 True 1109 1109 96.5720 1 670 1 chr2B.!!$R1 669
8 TraesCS5A01G390100 chr3A 378336978 378337648 670 True 1110 1110 96.5770 1 670 1 chr3A.!!$R1 669
9 TraesCS5A01G390100 chr3B 171120244 171120916 672 False 1101 1101 96.2850 1 669 1 chr3B.!!$F1 668
10 TraesCS5A01G390100 chr3B 247809139 247809810 671 False 1101 1101 96.2800 1 670 1 chr3B.!!$F2 669
11 TraesCS5A01G390100 chr6B 646915179 646915863 684 True 1098 1098 95.6200 1 683 1 chr6B.!!$R1 682

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 942 1.597797 TAACCGATCCGACAACCGCT 61.598 55.0 0.0 0.0 36.84 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2443 2570 0.106149 AGCGTGTTCCTCTTTTCCGT 59.894 50.0 0.0 0.0 0.0 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
135 137 5.278463 GCCATGATGTTTACACTGAAGTTGT 60.278 40.000 0.00 0.00 0.00 3.32
271 274 3.056962 ACATGCACGTAAAATTGCCATGA 60.057 39.130 0.00 0.00 38.00 3.07
382 385 4.942852 CCACATGGCAACTTCAGTTTAAA 58.057 39.130 0.00 0.00 35.83 1.52
420 423 3.630312 AGTGTAAACATCGTGGCAACTTT 59.370 39.130 0.00 0.00 37.61 2.66
586 596 6.949352 AAATTCTGCCGATGTCATCTATTT 57.051 33.333 11.04 4.81 0.00 1.40
610 620 3.908213 ACGTGGCAAAATAAATGGTGAC 58.092 40.909 0.00 0.00 0.00 3.67
674 685 5.399892 GCGTTAACATTTCCGAAAAACATCA 59.600 36.000 6.39 0.00 0.00 3.07
911 935 3.144506 TCCTCTACATAACCGATCCGAC 58.855 50.000 0.00 0.00 0.00 4.79
918 942 1.597797 TAACCGATCCGACAACCGCT 61.598 55.000 0.00 0.00 36.84 5.52
940 964 4.436998 CGCCCACGGTGGAGTCTC 62.437 72.222 28.36 10.29 40.96 3.36
945 969 1.649390 CCACGGTGGAGTCTCTCTCG 61.649 65.000 22.77 4.11 40.96 4.04
952 976 3.119709 GAGTCTCTCTCGCCGCCAG 62.120 68.421 0.00 0.00 33.25 4.85
1055 1082 3.157949 GGAGGAGAAGGAGGCGGG 61.158 72.222 0.00 0.00 0.00 6.13
1167 1194 4.479993 ATGGCGCTGCTGGAGGTC 62.480 66.667 7.64 0.00 0.00 3.85
1556 1609 2.194597 GTGTGTTCCCTGTGCCCA 59.805 61.111 0.00 0.00 0.00 5.36
1558 1611 2.382770 TGTGTTCCCTGTGCCCACT 61.383 57.895 0.00 0.00 0.00 4.00
1622 1686 6.208644 GTCGTCAGGTGTGTTAGTTTAGTTA 58.791 40.000 0.00 0.00 0.00 2.24
1623 1687 6.361748 GTCGTCAGGTGTGTTAGTTTAGTTAG 59.638 42.308 0.00 0.00 0.00 2.34
1627 1691 8.143835 GTCAGGTGTGTTAGTTTAGTTAGGTTA 58.856 37.037 0.00 0.00 0.00 2.85
1676 1747 3.121030 GTGCGTGCGATCTTGGCT 61.121 61.111 0.00 0.00 0.00 4.75
1677 1748 2.358615 TGCGTGCGATCTTGGCTT 60.359 55.556 0.00 0.00 0.00 4.35
1680 1751 1.868997 CGTGCGATCTTGGCTTTGT 59.131 52.632 0.00 0.00 0.00 2.83
1681 1752 0.238289 CGTGCGATCTTGGCTTTGTT 59.762 50.000 0.00 0.00 0.00 2.83
1695 1767 2.529151 CTTTGTTGTGTCGCTGCTTTT 58.471 42.857 0.00 0.00 0.00 2.27
1696 1768 3.690422 CTTTGTTGTGTCGCTGCTTTTA 58.310 40.909 0.00 0.00 0.00 1.52
1698 1770 1.601903 TGTTGTGTCGCTGCTTTTAGG 59.398 47.619 0.00 0.00 0.00 2.69
1699 1771 1.871039 GTTGTGTCGCTGCTTTTAGGA 59.129 47.619 0.00 0.00 0.00 2.94
1700 1772 2.472695 TGTGTCGCTGCTTTTAGGAT 57.527 45.000 0.00 0.00 0.00 3.24
1718 1790 2.430465 GATGGATGGATTCGTGATGGG 58.570 52.381 0.00 0.00 0.00 4.00
1752 1829 1.434188 TGGCTTTGGAGAGAGGAACA 58.566 50.000 0.00 0.00 0.00 3.18
1754 1831 1.447945 GCTTTGGAGAGAGGAACAGC 58.552 55.000 0.00 0.00 0.00 4.40
1757 1835 0.318441 TTGGAGAGAGGAACAGCGTG 59.682 55.000 0.00 0.00 0.00 5.34
1773 1851 0.898320 CGTGGTCCTGAACTCCTGAT 59.102 55.000 0.00 0.00 0.00 2.90
1774 1852 1.134965 CGTGGTCCTGAACTCCTGATC 60.135 57.143 0.00 0.00 0.00 2.92
1775 1853 1.902508 GTGGTCCTGAACTCCTGATCA 59.097 52.381 0.00 0.00 0.00 2.92
1776 1854 2.503356 GTGGTCCTGAACTCCTGATCAT 59.497 50.000 0.00 0.00 0.00 2.45
1777 1855 2.768527 TGGTCCTGAACTCCTGATCATC 59.231 50.000 0.00 0.00 0.00 2.92
1780 1858 2.954989 TCCTGAACTCCTGATCATCGAG 59.045 50.000 15.16 15.16 0.00 4.04
1782 1860 2.361757 CTGAACTCCTGATCATCGAGCT 59.638 50.000 16.22 7.47 0.00 4.09
1783 1861 2.360483 TGAACTCCTGATCATCGAGCTC 59.640 50.000 16.22 14.49 0.00 4.09
1784 1862 2.363306 ACTCCTGATCATCGAGCTCT 57.637 50.000 12.85 0.00 0.00 4.09
1785 1863 1.955778 ACTCCTGATCATCGAGCTCTG 59.044 52.381 12.85 4.23 0.00 3.35
1786 1864 0.672889 TCCTGATCATCGAGCTCTGC 59.327 55.000 12.85 0.00 0.00 4.26
1787 1865 0.319727 CCTGATCATCGAGCTCTGCC 60.320 60.000 12.85 0.84 0.00 4.85
1788 1866 0.388294 CTGATCATCGAGCTCTGCCA 59.612 55.000 12.85 5.19 0.00 4.92
1791 1869 2.158856 TGATCATCGAGCTCTGCCAATT 60.159 45.455 12.85 0.00 0.00 2.32
1792 1870 1.660167 TCATCGAGCTCTGCCAATTG 58.340 50.000 12.85 0.00 0.00 2.32
1793 1871 1.065926 TCATCGAGCTCTGCCAATTGT 60.066 47.619 12.85 0.00 0.00 2.71
1794 1872 1.063616 CATCGAGCTCTGCCAATTGTG 59.936 52.381 12.85 0.00 0.00 3.33
1795 1873 1.136147 CGAGCTCTGCCAATTGTGC 59.864 57.895 12.85 8.21 0.00 4.57
1797 1875 0.599558 GAGCTCTGCCAATTGTGCAA 59.400 50.000 18.25 10.92 38.46 4.08
1832 1934 0.028902 GGCACTCGTGGTCAAACAAC 59.971 55.000 0.00 0.00 0.00 3.32
1836 1938 2.542595 CACTCGTGGTCAAACAACCTAC 59.457 50.000 0.00 0.00 40.20 3.18
1838 1940 3.057734 CTCGTGGTCAAACAACCTACTC 58.942 50.000 0.00 0.00 40.20 2.59
1844 1946 3.985925 GGTCAAACAACCTACTCGTAGTG 59.014 47.826 3.64 0.00 36.32 2.74
1848 1950 5.477984 TCAAACAACCTACTCGTAGTGGTAT 59.522 40.000 3.64 0.00 32.15 2.73
1850 1952 7.176515 TCAAACAACCTACTCGTAGTGGTATTA 59.823 37.037 3.64 0.00 32.15 0.98
1851 1953 7.651027 AACAACCTACTCGTAGTGGTATTAT 57.349 36.000 3.64 0.00 32.15 1.28
1852 1954 7.035840 ACAACCTACTCGTAGTGGTATTATG 57.964 40.000 3.64 0.00 32.15 1.90
1853 1955 5.702349 ACCTACTCGTAGTGGTATTATGC 57.298 43.478 3.64 0.00 31.17 3.14
1854 1956 5.383476 ACCTACTCGTAGTGGTATTATGCT 58.617 41.667 3.64 0.00 31.17 3.79
1855 1957 5.241064 ACCTACTCGTAGTGGTATTATGCTG 59.759 44.000 3.64 0.00 31.17 4.41
1878 1994 4.619160 GCTAGTGGCAAATCTTTTGAAGGG 60.619 45.833 4.24 0.00 41.35 3.95
1882 1998 5.779771 AGTGGCAAATCTTTTGAAGGGATTA 59.220 36.000 4.24 0.00 0.00 1.75
1883 1999 5.869344 GTGGCAAATCTTTTGAAGGGATTAC 59.131 40.000 4.24 0.00 0.00 1.89
1884 2000 5.541868 TGGCAAATCTTTTGAAGGGATTACA 59.458 36.000 4.24 0.00 0.00 2.41
1885 2001 5.869344 GGCAAATCTTTTGAAGGGATTACAC 59.131 40.000 4.24 0.00 0.00 2.90
1888 2004 3.681593 TCTTTTGAAGGGATTACACGGG 58.318 45.455 0.00 0.00 0.00 5.28
1911 2027 4.792068 CCTAATGGCCACCAAAGATAAGA 58.208 43.478 8.16 0.00 36.95 2.10
1913 2029 5.835280 CCTAATGGCCACCAAAGATAAGATT 59.165 40.000 8.16 0.00 36.95 2.40
1914 2030 7.004086 CCTAATGGCCACCAAAGATAAGATTA 58.996 38.462 8.16 0.00 36.95 1.75
1915 2031 6.715347 AATGGCCACCAAAGATAAGATTAC 57.285 37.500 8.16 0.00 36.95 1.89
1932 2048 5.909477 AGATTACCATTTGCCAATGTGATG 58.091 37.500 9.45 0.00 38.58 3.07
1936 2052 2.004017 CATTTGCCAATGTGATGCACC 58.996 47.619 2.36 0.00 35.86 5.01
1940 2056 0.740737 GCCAATGTGATGCACCCTAC 59.259 55.000 0.00 0.00 32.73 3.18
1942 2058 1.392589 CAATGTGATGCACCCTACCC 58.607 55.000 0.00 0.00 32.73 3.69
1944 2060 1.983119 ATGTGATGCACCCTACCCGG 61.983 60.000 0.00 0.00 32.73 5.73
1945 2061 2.285069 TGATGCACCCTACCCGGT 60.285 61.111 0.00 0.00 36.18 5.28
1995 2117 0.471191 TGCGAATCATGGGAGCTCAT 59.529 50.000 17.19 0.00 0.00 2.90
2004 2126 2.930023 CATGGGAGCTCATGATACGCTC 60.930 54.545 21.39 21.39 45.30 5.03
2006 2128 2.429447 GAGCTCATGATACGCTCGC 58.571 57.895 16.82 6.26 40.48 5.03
2010 2132 1.070975 GCTCATGATACGCTCGCTTTG 60.071 52.381 0.00 0.00 0.00 2.77
2045 2168 2.846193 TGTGACACTGTTTAAGGCTCC 58.154 47.619 7.20 0.00 0.00 4.70
2082 2205 7.504911 AGGATTGATTCAAAGGAATGTCATAGG 59.495 37.037 2.68 0.00 43.69 2.57
2083 2206 7.286316 GGATTGATTCAAAGGAATGTCATAGGT 59.714 37.037 2.68 0.00 43.69 3.08
2086 2209 7.405292 TGATTCAAAGGAATGTCATAGGTTCT 58.595 34.615 0.00 0.00 43.69 3.01
2149 2273 3.313526 CCTTCATAGCCTGTTTGATTCGG 59.686 47.826 0.00 0.00 0.00 4.30
2157 2281 3.347216 CCTGTTTGATTCGGAGGATTGT 58.653 45.455 0.00 0.00 0.00 2.71
2158 2282 4.513442 CCTGTTTGATTCGGAGGATTGTA 58.487 43.478 0.00 0.00 0.00 2.41
2160 2284 5.160607 TGTTTGATTCGGAGGATTGTAGT 57.839 39.130 0.00 0.00 0.00 2.73
2161 2285 5.175859 TGTTTGATTCGGAGGATTGTAGTC 58.824 41.667 0.00 0.00 0.00 2.59
2162 2286 4.402056 TTGATTCGGAGGATTGTAGTCC 57.598 45.455 0.00 0.00 38.62 3.85
2187 2314 4.379302 GGAATATTCCCTGAGGATTGCT 57.621 45.455 22.09 0.00 43.54 3.91
2188 2315 4.331108 GGAATATTCCCTGAGGATTGCTC 58.669 47.826 22.09 0.00 43.54 4.26
2189 2316 4.042684 GGAATATTCCCTGAGGATTGCTCT 59.957 45.833 22.09 0.00 43.54 4.09
2190 2317 4.637387 ATATTCCCTGAGGATTGCTCTG 57.363 45.455 0.00 5.96 43.54 3.35
2191 2318 0.254178 TTCCCTGAGGATTGCTCTGC 59.746 55.000 0.00 0.00 43.54 4.26
2192 2319 0.911045 TCCCTGAGGATTGCTCTGCA 60.911 55.000 0.00 0.00 37.19 4.41
2193 2320 0.747283 CCCTGAGGATTGCTCTGCAC 60.747 60.000 0.00 0.00 34.31 4.57
2194 2321 0.252479 CCTGAGGATTGCTCTGCACT 59.748 55.000 6.74 0.00 38.71 4.40
2195 2322 1.654317 CTGAGGATTGCTCTGCACTC 58.346 55.000 6.74 1.98 38.71 3.51
2196 2323 1.207570 CTGAGGATTGCTCTGCACTCT 59.792 52.381 6.74 0.46 38.71 3.24
2197 2324 1.066358 TGAGGATTGCTCTGCACTCTG 60.066 52.381 6.74 0.00 38.71 3.35
2198 2325 0.982704 AGGATTGCTCTGCACTCTGT 59.017 50.000 9.18 0.00 38.71 3.41
2199 2326 1.350351 AGGATTGCTCTGCACTCTGTT 59.650 47.619 9.18 0.00 38.71 3.16
2200 2327 2.157738 GGATTGCTCTGCACTCTGTTT 58.842 47.619 9.18 0.00 38.71 2.83
2201 2328 2.161211 GGATTGCTCTGCACTCTGTTTC 59.839 50.000 9.18 0.00 38.71 2.78
2202 2329 2.627515 TTGCTCTGCACTCTGTTTCT 57.372 45.000 0.00 0.00 38.71 2.52
2203 2330 1.875009 TGCTCTGCACTCTGTTTCTG 58.125 50.000 0.00 0.00 31.71 3.02
2204 2331 1.413812 TGCTCTGCACTCTGTTTCTGA 59.586 47.619 0.00 0.00 31.71 3.27
2205 2332 2.158914 TGCTCTGCACTCTGTTTCTGAA 60.159 45.455 0.00 0.00 31.71 3.02
2206 2333 2.479656 GCTCTGCACTCTGTTTCTGAAG 59.520 50.000 0.00 0.00 0.00 3.02
2207 2334 3.801638 GCTCTGCACTCTGTTTCTGAAGA 60.802 47.826 0.00 0.00 0.00 2.87
2208 2335 4.375272 CTCTGCACTCTGTTTCTGAAGAA 58.625 43.478 0.00 0.00 0.00 2.52
2209 2336 4.769688 TCTGCACTCTGTTTCTGAAGAAA 58.230 39.130 1.31 1.31 41.29 2.52
2210 2337 5.185454 TCTGCACTCTGTTTCTGAAGAAAA 58.815 37.500 7.05 0.00 44.58 2.29
2211 2338 5.647658 TCTGCACTCTGTTTCTGAAGAAAAA 59.352 36.000 7.05 1.48 44.58 1.94
2212 2339 5.640732 TGCACTCTGTTTCTGAAGAAAAAC 58.359 37.500 7.05 0.00 44.58 2.43
2213 2340 5.182950 TGCACTCTGTTTCTGAAGAAAAACA 59.817 36.000 7.05 2.78 44.58 2.83
2214 2341 6.092748 GCACTCTGTTTCTGAAGAAAAACAA 58.907 36.000 7.05 0.00 44.58 2.83
2215 2342 6.753744 GCACTCTGTTTCTGAAGAAAAACAAT 59.246 34.615 7.05 0.00 44.58 2.71
2216 2343 7.043788 GCACTCTGTTTCTGAAGAAAAACAATC 60.044 37.037 7.05 0.00 44.58 2.67
2217 2344 7.433425 CACTCTGTTTCTGAAGAAAAACAATCC 59.567 37.037 7.05 0.00 44.58 3.01
2218 2345 7.122650 ACTCTGTTTCTGAAGAAAAACAATCCA 59.877 33.333 7.05 0.00 44.58 3.41
2219 2346 8.010733 TCTGTTTCTGAAGAAAAACAATCCAT 57.989 30.769 7.05 0.00 44.58 3.41
2220 2347 8.137437 TCTGTTTCTGAAGAAAAACAATCCATC 58.863 33.333 7.05 0.00 44.58 3.51
2221 2348 7.209475 TGTTTCTGAAGAAAAACAATCCATCC 58.791 34.615 7.05 0.00 44.58 3.51
2222 2349 6.975196 TTCTGAAGAAAAACAATCCATCCA 57.025 33.333 0.00 0.00 0.00 3.41
2223 2350 6.331369 TCTGAAGAAAAACAATCCATCCAC 57.669 37.500 0.00 0.00 0.00 4.02
2224 2351 6.070656 TCTGAAGAAAAACAATCCATCCACT 58.929 36.000 0.00 0.00 0.00 4.00
2225 2352 6.207417 TCTGAAGAAAAACAATCCATCCACTC 59.793 38.462 0.00 0.00 0.00 3.51
2226 2353 6.070656 TGAAGAAAAACAATCCATCCACTCT 58.929 36.000 0.00 0.00 0.00 3.24
2227 2354 5.972107 AGAAAAACAATCCATCCACTCTG 57.028 39.130 0.00 0.00 0.00 3.35
2228 2355 5.388654 AGAAAAACAATCCATCCACTCTGT 58.611 37.500 0.00 0.00 0.00 3.41
2229 2356 5.835280 AGAAAAACAATCCATCCACTCTGTT 59.165 36.000 0.00 0.00 0.00 3.16
2230 2357 6.324770 AGAAAAACAATCCATCCACTCTGTTT 59.675 34.615 0.00 0.00 38.32 2.83
2231 2358 5.712152 AAACAATCCATCCACTCTGTTTC 57.288 39.130 0.00 0.00 32.99 2.78
2232 2359 4.647564 ACAATCCATCCACTCTGTTTCT 57.352 40.909 0.00 0.00 0.00 2.52
2233 2360 4.990526 ACAATCCATCCACTCTGTTTCTT 58.009 39.130 0.00 0.00 0.00 2.52
2234 2361 5.388654 ACAATCCATCCACTCTGTTTCTTT 58.611 37.500 0.00 0.00 0.00 2.52
2235 2362 5.474876 ACAATCCATCCACTCTGTTTCTTTC 59.525 40.000 0.00 0.00 0.00 2.62
2236 2363 4.021102 TCCATCCACTCTGTTTCTTTCC 57.979 45.455 0.00 0.00 0.00 3.13
2237 2364 3.652869 TCCATCCACTCTGTTTCTTTCCT 59.347 43.478 0.00 0.00 0.00 3.36
2238 2365 3.755378 CCATCCACTCTGTTTCTTTCCTG 59.245 47.826 0.00 0.00 0.00 3.86
2239 2366 4.392940 CATCCACTCTGTTTCTTTCCTGT 58.607 43.478 0.00 0.00 0.00 4.00
2240 2367 3.808728 TCCACTCTGTTTCTTTCCTGTG 58.191 45.455 0.00 0.00 0.00 3.66
2241 2368 2.880890 CCACTCTGTTTCTTTCCTGTGG 59.119 50.000 0.00 0.00 37.87 4.17
2242 2369 2.291741 CACTCTGTTTCTTTCCTGTGGC 59.708 50.000 0.00 0.00 0.00 5.01
2243 2370 2.092429 ACTCTGTTTCTTTCCTGTGGCA 60.092 45.455 0.00 0.00 0.00 4.92
2244 2371 2.291741 CTCTGTTTCTTTCCTGTGGCAC 59.708 50.000 11.55 11.55 0.00 5.01
2245 2372 1.338020 CTGTTTCTTTCCTGTGGCACC 59.662 52.381 16.26 0.00 0.00 5.01
2246 2373 1.341482 TGTTTCTTTCCTGTGGCACCA 60.341 47.619 16.26 2.28 0.00 4.17
2247 2374 1.754226 GTTTCTTTCCTGTGGCACCAA 59.246 47.619 16.26 2.27 0.00 3.67
2248 2375 2.151502 TTCTTTCCTGTGGCACCAAA 57.848 45.000 16.26 10.32 0.00 3.28
2249 2376 1.398692 TCTTTCCTGTGGCACCAAAC 58.601 50.000 16.26 0.00 0.00 2.93
2250 2377 1.064017 TCTTTCCTGTGGCACCAAACT 60.064 47.619 16.26 0.00 0.00 2.66
2251 2378 1.756538 CTTTCCTGTGGCACCAAACTT 59.243 47.619 16.26 0.00 0.00 2.66
2252 2379 1.859302 TTCCTGTGGCACCAAACTTT 58.141 45.000 16.26 0.00 0.00 2.66
2253 2380 1.859302 TCCTGTGGCACCAAACTTTT 58.141 45.000 16.26 0.00 0.00 2.27
2254 2381 1.480137 TCCTGTGGCACCAAACTTTTG 59.520 47.619 16.26 0.00 37.90 2.44
2255 2382 1.480137 CCTGTGGCACCAAACTTTTGA 59.520 47.619 16.26 0.00 40.55 2.69
2256 2383 2.102925 CCTGTGGCACCAAACTTTTGAT 59.897 45.455 16.26 0.00 40.55 2.57
2257 2384 3.125316 CTGTGGCACCAAACTTTTGATG 58.875 45.455 16.26 0.00 40.55 3.07
2258 2385 2.762887 TGTGGCACCAAACTTTTGATGA 59.237 40.909 16.26 0.00 40.55 2.92
2259 2386 3.387374 TGTGGCACCAAACTTTTGATGAT 59.613 39.130 16.26 0.00 40.55 2.45
2260 2387 3.989817 GTGGCACCAAACTTTTGATGATC 59.010 43.478 6.29 0.00 40.55 2.92
2261 2388 3.006752 TGGCACCAAACTTTTGATGATCC 59.993 43.478 0.00 0.00 40.55 3.36
2262 2389 3.588955 GCACCAAACTTTTGATGATCCC 58.411 45.455 0.00 0.00 40.55 3.85
2263 2390 3.259123 GCACCAAACTTTTGATGATCCCT 59.741 43.478 0.00 0.00 40.55 4.20
2264 2391 4.813027 CACCAAACTTTTGATGATCCCTG 58.187 43.478 3.17 0.00 40.55 4.45
2265 2392 3.259123 ACCAAACTTTTGATGATCCCTGC 59.741 43.478 3.17 0.00 40.55 4.85
2266 2393 3.512724 CCAAACTTTTGATGATCCCTGCT 59.487 43.478 3.17 0.00 40.55 4.24
2267 2394 4.020839 CCAAACTTTTGATGATCCCTGCTT 60.021 41.667 3.17 0.00 40.55 3.91
2268 2395 4.796038 AACTTTTGATGATCCCTGCTTG 57.204 40.909 0.00 0.00 0.00 4.01
2269 2396 4.038271 ACTTTTGATGATCCCTGCTTGA 57.962 40.909 0.00 0.00 0.00 3.02
2270 2397 4.410099 ACTTTTGATGATCCCTGCTTGAA 58.590 39.130 0.00 0.00 0.00 2.69
2271 2398 5.021458 ACTTTTGATGATCCCTGCTTGAAT 58.979 37.500 0.00 0.00 0.00 2.57
2272 2399 5.482878 ACTTTTGATGATCCCTGCTTGAATT 59.517 36.000 0.00 0.00 0.00 2.17
2273 2400 6.013984 ACTTTTGATGATCCCTGCTTGAATTT 60.014 34.615 0.00 0.00 0.00 1.82
2274 2401 5.587388 TTGATGATCCCTGCTTGAATTTC 57.413 39.130 0.00 0.00 0.00 2.17
2275 2402 4.863548 TGATGATCCCTGCTTGAATTTCT 58.136 39.130 0.00 0.00 0.00 2.52
2276 2403 4.643334 TGATGATCCCTGCTTGAATTTCTG 59.357 41.667 0.00 0.00 0.00 3.02
2277 2404 4.038271 TGATCCCTGCTTGAATTTCTGT 57.962 40.909 0.00 0.00 0.00 3.41
2278 2405 4.012374 TGATCCCTGCTTGAATTTCTGTC 58.988 43.478 0.00 0.00 0.00 3.51
2279 2406 3.507162 TCCCTGCTTGAATTTCTGTCA 57.493 42.857 0.00 0.00 0.00 3.58
2280 2407 3.415212 TCCCTGCTTGAATTTCTGTCAG 58.585 45.455 0.00 0.00 0.00 3.51
2281 2408 3.072915 TCCCTGCTTGAATTTCTGTCAGA 59.927 43.478 0.00 0.00 0.00 3.27
2282 2409 4.015084 CCCTGCTTGAATTTCTGTCAGAT 58.985 43.478 2.68 0.00 0.00 2.90
2283 2410 4.461781 CCCTGCTTGAATTTCTGTCAGATT 59.538 41.667 2.68 0.00 0.00 2.40
2284 2411 5.649395 CCCTGCTTGAATTTCTGTCAGATTA 59.351 40.000 2.68 0.00 0.00 1.75
2285 2412 6.183360 CCCTGCTTGAATTTCTGTCAGATTAG 60.183 42.308 2.68 0.00 0.00 1.73
2286 2413 6.187125 TGCTTGAATTTCTGTCAGATTAGC 57.813 37.500 2.68 4.06 0.00 3.09
2287 2414 5.706833 TGCTTGAATTTCTGTCAGATTAGCA 59.293 36.000 2.68 6.48 34.41 3.49
2288 2415 6.376299 TGCTTGAATTTCTGTCAGATTAGCAT 59.624 34.615 2.68 0.00 32.77 3.79
2289 2416 7.553760 TGCTTGAATTTCTGTCAGATTAGCATA 59.446 33.333 2.68 0.00 32.77 3.14
2290 2417 8.400947 GCTTGAATTTCTGTCAGATTAGCATAA 58.599 33.333 2.68 0.00 29.47 1.90
2291 2418 9.713740 CTTGAATTTCTGTCAGATTAGCATAAC 57.286 33.333 2.68 0.00 0.00 1.89
2292 2419 8.213518 TGAATTTCTGTCAGATTAGCATAACC 57.786 34.615 2.68 0.00 0.00 2.85
2293 2420 7.828717 TGAATTTCTGTCAGATTAGCATAACCA 59.171 33.333 2.68 0.00 0.00 3.67
2294 2421 8.757982 AATTTCTGTCAGATTAGCATAACCAT 57.242 30.769 2.68 0.00 0.00 3.55
2295 2422 8.757982 ATTTCTGTCAGATTAGCATAACCATT 57.242 30.769 2.68 0.00 0.00 3.16
2296 2423 9.851686 ATTTCTGTCAGATTAGCATAACCATTA 57.148 29.630 2.68 0.00 0.00 1.90
2297 2424 8.662781 TTCTGTCAGATTAGCATAACCATTAC 57.337 34.615 2.68 0.00 0.00 1.89
2298 2425 7.791029 TCTGTCAGATTAGCATAACCATTACA 58.209 34.615 0.00 0.00 0.00 2.41
2299 2426 7.928167 TCTGTCAGATTAGCATAACCATTACAG 59.072 37.037 0.00 0.00 0.00 2.74
2300 2427 7.564793 TGTCAGATTAGCATAACCATTACAGT 58.435 34.615 0.00 0.00 0.00 3.55
2301 2428 8.700973 TGTCAGATTAGCATAACCATTACAGTA 58.299 33.333 0.00 0.00 0.00 2.74
2302 2429 8.979574 GTCAGATTAGCATAACCATTACAGTAC 58.020 37.037 0.00 0.00 0.00 2.73
2303 2430 8.700973 TCAGATTAGCATAACCATTACAGTACA 58.299 33.333 0.00 0.00 0.00 2.90
2304 2431 9.494271 CAGATTAGCATAACCATTACAGTACAT 57.506 33.333 0.00 0.00 0.00 2.29
2310 2437 9.681062 AGCATAACCATTACAGTACATTTAAGT 57.319 29.630 0.00 0.00 0.00 2.24
2311 2438 9.716507 GCATAACCATTACAGTACATTTAAGTG 57.283 33.333 0.00 0.00 0.00 3.16
2312 2439 9.716507 CATAACCATTACAGTACATTTAAGTGC 57.283 33.333 0.00 0.00 0.00 4.40
2313 2440 7.753309 AACCATTACAGTACATTTAAGTGCA 57.247 32.000 0.00 0.00 0.00 4.57
2314 2441 7.938140 ACCATTACAGTACATTTAAGTGCAT 57.062 32.000 0.00 0.00 0.00 3.96
2315 2442 9.456147 AACCATTACAGTACATTTAAGTGCATA 57.544 29.630 0.00 0.00 0.00 3.14
2316 2443 9.627123 ACCATTACAGTACATTTAAGTGCATAT 57.373 29.630 0.00 0.00 0.00 1.78
2354 2481 9.598517 TTTTGGGATGCATATTCTTAATTGAAC 57.401 29.630 0.00 0.00 0.00 3.18
2355 2482 7.894753 TGGGATGCATATTCTTAATTGAACA 57.105 32.000 0.00 0.00 0.00 3.18
2356 2483 8.303780 TGGGATGCATATTCTTAATTGAACAA 57.696 30.769 0.00 0.00 0.00 2.83
2357 2484 8.196771 TGGGATGCATATTCTTAATTGAACAAC 58.803 33.333 0.00 0.00 0.00 3.32
2358 2485 7.653311 GGGATGCATATTCTTAATTGAACAACC 59.347 37.037 0.00 0.00 0.00 3.77
2359 2486 8.196771 GGATGCATATTCTTAATTGAACAACCA 58.803 33.333 0.00 0.00 0.00 3.67
2360 2487 9.241317 GATGCATATTCTTAATTGAACAACCAG 57.759 33.333 0.00 0.00 0.00 4.00
2361 2488 8.347004 TGCATATTCTTAATTGAACAACCAGA 57.653 30.769 0.00 0.00 0.00 3.86
2362 2489 8.801299 TGCATATTCTTAATTGAACAACCAGAA 58.199 29.630 0.00 0.00 0.00 3.02
2363 2490 9.638239 GCATATTCTTAATTGAACAACCAGAAA 57.362 29.630 0.00 0.00 0.00 2.52
2371 2498 9.883142 TTAATTGAACAACCAGAAATTGAAACT 57.117 25.926 0.00 0.00 0.00 2.66
2372 2499 8.791327 AATTGAACAACCAGAAATTGAAACTT 57.209 26.923 0.00 0.00 0.00 2.66
2373 2500 9.883142 AATTGAACAACCAGAAATTGAAACTTA 57.117 25.926 0.00 0.00 0.00 2.24
2375 2502 8.870160 TGAACAACCAGAAATTGAAACTTATG 57.130 30.769 0.00 0.00 0.00 1.90
2376 2503 8.690884 TGAACAACCAGAAATTGAAACTTATGA 58.309 29.630 0.00 0.00 0.00 2.15
2377 2504 9.528018 GAACAACCAGAAATTGAAACTTATGAA 57.472 29.630 0.00 0.00 0.00 2.57
2378 2505 9.883142 AACAACCAGAAATTGAAACTTATGAAA 57.117 25.926 0.00 0.00 0.00 2.69
2379 2506 9.313118 ACAACCAGAAATTGAAACTTATGAAAC 57.687 29.630 0.00 0.00 0.00 2.78
2380 2507 9.311916 CAACCAGAAATTGAAACTTATGAAACA 57.688 29.630 0.00 0.00 0.00 2.83
2381 2508 9.883142 AACCAGAAATTGAAACTTATGAAACAA 57.117 25.926 0.00 0.00 0.00 2.83
2382 2509 9.883142 ACCAGAAATTGAAACTTATGAAACAAA 57.117 25.926 0.00 0.00 0.00 2.83
2415 2542 9.598517 TTTTGGGATGCATATTCTTAATTGAAC 57.401 29.630 0.00 0.00 0.00 3.18
2416 2543 7.894753 TGGGATGCATATTCTTAATTGAACA 57.105 32.000 0.00 0.00 0.00 3.18
2417 2544 8.303780 TGGGATGCATATTCTTAATTGAACAA 57.696 30.769 0.00 0.00 0.00 2.83
2418 2545 8.196771 TGGGATGCATATTCTTAATTGAACAAC 58.803 33.333 0.00 0.00 0.00 3.32
2419 2546 7.653311 GGGATGCATATTCTTAATTGAACAACC 59.347 37.037 0.00 0.00 0.00 3.77
2420 2547 8.196771 GGATGCATATTCTTAATTGAACAACCA 58.803 33.333 0.00 0.00 0.00 3.67
2421 2548 9.241317 GATGCATATTCTTAATTGAACAACCAG 57.759 33.333 0.00 0.00 0.00 4.00
2422 2549 8.347004 TGCATATTCTTAATTGAACAACCAGA 57.653 30.769 0.00 0.00 0.00 3.86
2423 2550 8.801299 TGCATATTCTTAATTGAACAACCAGAA 58.199 29.630 0.00 0.00 0.00 3.02
2424 2551 9.638239 GCATATTCTTAATTGAACAACCAGAAA 57.362 29.630 0.00 0.00 0.00 2.52
2432 2559 9.883142 TTAATTGAACAACCAGAAATTGAAACT 57.117 25.926 0.00 0.00 0.00 2.66
2433 2560 8.791327 AATTGAACAACCAGAAATTGAAACTT 57.209 26.923 0.00 0.00 0.00 2.66
2434 2561 9.883142 AATTGAACAACCAGAAATTGAAACTTA 57.117 25.926 0.00 0.00 0.00 2.24
2436 2563 8.870160 TGAACAACCAGAAATTGAAACTTATG 57.130 30.769 0.00 0.00 0.00 1.90
2437 2564 8.690884 TGAACAACCAGAAATTGAAACTTATGA 58.309 29.630 0.00 0.00 0.00 2.15
2438 2565 9.528018 GAACAACCAGAAATTGAAACTTATGAA 57.472 29.630 0.00 0.00 0.00 2.57
2439 2566 9.883142 AACAACCAGAAATTGAAACTTATGAAA 57.117 25.926 0.00 0.00 0.00 2.69
2440 2567 9.313118 ACAACCAGAAATTGAAACTTATGAAAC 57.687 29.630 0.00 0.00 0.00 2.78
2441 2568 9.311916 CAACCAGAAATTGAAACTTATGAAACA 57.688 29.630 0.00 0.00 0.00 2.83
2442 2569 9.883142 AACCAGAAATTGAAACTTATGAAACAA 57.117 25.926 0.00 0.00 0.00 2.83
2443 2570 9.883142 ACCAGAAATTGAAACTTATGAAACAAA 57.117 25.926 0.00 0.00 0.00 2.83
2445 2572 9.833894 CAGAAATTGAAACTTATGAAACAAACG 57.166 29.630 0.00 0.00 0.00 3.60
2446 2573 9.030301 AGAAATTGAAACTTATGAAACAAACGG 57.970 29.630 0.00 0.00 0.00 4.44
2447 2574 8.934507 AAATTGAAACTTATGAAACAAACGGA 57.065 26.923 0.00 0.00 0.00 4.69
2448 2575 8.934507 AATTGAAACTTATGAAACAAACGGAA 57.065 26.923 0.00 0.00 0.00 4.30
2449 2576 8.934507 ATTGAAACTTATGAAACAAACGGAAA 57.065 26.923 0.00 0.00 0.00 3.13
2450 2577 8.758633 TTGAAACTTATGAAACAAACGGAAAA 57.241 26.923 0.00 0.00 0.00 2.29
2451 2578 8.401046 TGAAACTTATGAAACAAACGGAAAAG 57.599 30.769 0.00 0.00 0.00 2.27
2452 2579 8.244802 TGAAACTTATGAAACAAACGGAAAAGA 58.755 29.630 0.00 0.00 0.00 2.52
2453 2580 8.628882 AAACTTATGAAACAAACGGAAAAGAG 57.371 30.769 0.00 0.00 0.00 2.85
2454 2581 6.735130 ACTTATGAAACAAACGGAAAAGAGG 58.265 36.000 0.00 0.00 0.00 3.69
2455 2582 6.544564 ACTTATGAAACAAACGGAAAAGAGGA 59.455 34.615 0.00 0.00 0.00 3.71
2456 2583 5.845391 ATGAAACAAACGGAAAAGAGGAA 57.155 34.783 0.00 0.00 0.00 3.36
2457 2584 4.989044 TGAAACAAACGGAAAAGAGGAAC 58.011 39.130 0.00 0.00 0.00 3.62
2458 2585 4.459685 TGAAACAAACGGAAAAGAGGAACA 59.540 37.500 0.00 0.00 0.00 3.18
2459 2586 4.365899 AACAAACGGAAAAGAGGAACAC 57.634 40.909 0.00 0.00 0.00 3.32
2460 2587 2.353579 ACAAACGGAAAAGAGGAACACG 59.646 45.455 0.00 0.00 0.00 4.49
2461 2588 0.942252 AACGGAAAAGAGGAACACGC 59.058 50.000 0.00 0.00 0.00 5.34
2462 2589 0.106149 ACGGAAAAGAGGAACACGCT 59.894 50.000 0.00 0.00 0.00 5.07
2463 2590 1.226746 CGGAAAAGAGGAACACGCTT 58.773 50.000 0.00 0.00 41.22 4.68
2464 2591 2.224113 ACGGAAAAGAGGAACACGCTTA 60.224 45.455 0.00 0.00 38.32 3.09
2465 2592 2.803956 CGGAAAAGAGGAACACGCTTAA 59.196 45.455 0.00 0.00 38.32 1.85
2466 2593 3.363673 CGGAAAAGAGGAACACGCTTAAC 60.364 47.826 0.00 0.00 38.32 2.01
2467 2594 3.562557 GGAAAAGAGGAACACGCTTAACA 59.437 43.478 0.00 0.00 38.32 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
374 377 4.618227 GCAGTTGCCATAGGGTTTAAACTG 60.618 45.833 17.50 19.79 41.35 3.16
382 385 0.322816 CACTGCAGTTGCCATAGGGT 60.323 55.000 18.94 0.00 41.18 4.34
439 447 5.191727 AGACCCCATGTTGATATGTTTCA 57.808 39.130 0.00 0.00 0.00 2.69
572 582 5.861787 TGCCACGTATAAATAGATGACATCG 59.138 40.000 9.77 0.00 0.00 3.84
586 596 6.457122 CGTCACCATTTATTTTGCCACGTATA 60.457 38.462 0.00 0.00 0.00 1.47
603 613 3.311110 ACACGCCTCCGTCACCAT 61.311 61.111 0.00 0.00 46.39 3.55
610 620 4.129737 ATCGTCCACACGCCTCCG 62.130 66.667 0.00 0.00 46.28 4.63
646 656 2.116827 TCGGAAATGTTAACGCCCAT 57.883 45.000 0.26 0.00 0.00 4.00
1365 1395 1.062685 GATCTCGCGCTCGAACTCA 59.937 57.895 5.56 0.00 44.98 3.41
1579 1637 1.165270 CGAGACGGGGCAAATCTTTT 58.835 50.000 0.00 0.00 0.00 2.27
1622 1686 1.134788 GCTGTACCACGATGCTAACCT 60.135 52.381 0.00 0.00 0.00 3.50
1623 1687 1.287425 GCTGTACCACGATGCTAACC 58.713 55.000 0.00 0.00 0.00 2.85
1627 1691 1.219124 CCTGCTGTACCACGATGCT 59.781 57.895 0.00 0.00 0.00 3.79
1676 1747 2.645730 AAAAGCAGCGACACAACAAA 57.354 40.000 0.00 0.00 0.00 2.83
1677 1748 2.032799 CCTAAAAGCAGCGACACAACAA 59.967 45.455 0.00 0.00 0.00 2.83
1680 1751 2.248280 TCCTAAAAGCAGCGACACAA 57.752 45.000 0.00 0.00 0.00 3.33
1681 1752 2.076100 CATCCTAAAAGCAGCGACACA 58.924 47.619 0.00 0.00 0.00 3.72
1695 1767 3.261643 CCATCACGAATCCATCCATCCTA 59.738 47.826 0.00 0.00 0.00 2.94
1696 1768 2.039480 CCATCACGAATCCATCCATCCT 59.961 50.000 0.00 0.00 0.00 3.24
1698 1770 2.430465 CCCATCACGAATCCATCCATC 58.570 52.381 0.00 0.00 0.00 3.51
1699 1771 1.546323 GCCCATCACGAATCCATCCAT 60.546 52.381 0.00 0.00 0.00 3.41
1700 1772 0.179020 GCCCATCACGAATCCATCCA 60.179 55.000 0.00 0.00 0.00 3.41
1718 1790 1.079612 GCCAAGCAATTCCACTGGC 60.080 57.895 0.00 0.00 0.00 4.85
1752 1829 1.534235 AGGAGTTCAGGACCACGCT 60.534 57.895 0.00 0.00 0.00 5.07
1754 1831 0.898320 ATCAGGAGTTCAGGACCACG 59.102 55.000 0.00 0.00 0.00 4.94
1757 1835 2.223923 CGATGATCAGGAGTTCAGGACC 60.224 54.545 0.09 0.00 0.00 4.46
1763 1841 2.622942 AGAGCTCGATGATCAGGAGTTC 59.377 50.000 24.02 24.02 38.03 3.01
1773 1851 1.065926 ACAATTGGCAGAGCTCGATGA 60.066 47.619 10.83 0.00 0.00 2.92
1774 1852 1.063616 CACAATTGGCAGAGCTCGATG 59.936 52.381 10.83 3.05 0.00 3.84
1775 1853 1.376543 CACAATTGGCAGAGCTCGAT 58.623 50.000 10.83 0.00 0.00 3.59
1776 1854 1.300971 GCACAATTGGCAGAGCTCGA 61.301 55.000 10.83 0.00 0.00 4.04
1777 1855 1.136147 GCACAATTGGCAGAGCTCG 59.864 57.895 10.83 4.60 0.00 5.03
1780 1858 1.355971 CATTGCACAATTGGCAGAGC 58.644 50.000 17.32 10.48 43.05 4.09
1782 1860 1.630223 TCCATTGCACAATTGGCAGA 58.370 45.000 17.32 11.29 43.05 4.26
1783 1861 2.459060 TTCCATTGCACAATTGGCAG 57.541 45.000 17.32 9.95 43.05 4.85
1784 1862 3.075148 CAATTCCATTGCACAATTGGCA 58.925 40.909 15.03 15.03 40.00 4.92
1785 1863 3.750639 CAATTCCATTGCACAATTGGC 57.249 42.857 10.83 10.82 34.97 4.52
1795 1873 1.948104 CCATGCAGGCAATTCCATTG 58.052 50.000 0.00 0.00 43.06 2.82
1807 1909 2.359107 ACCACGAGTGCCATGCAG 60.359 61.111 0.00 0.00 40.08 4.41
1832 1934 5.700846 CAGCATAATACCACTACGAGTAGG 58.299 45.833 14.00 1.73 37.49 3.18
1836 1938 4.244425 AGCAGCATAATACCACTACGAG 57.756 45.455 0.00 0.00 0.00 4.18
1838 1940 4.917998 CACTAGCAGCATAATACCACTACG 59.082 45.833 0.00 0.00 0.00 3.51
1855 1957 4.488879 CCTTCAAAAGATTTGCCACTAGC 58.511 43.478 0.00 0.00 44.14 3.42
1870 1986 1.614850 GGCCCGTGTAATCCCTTCAAA 60.615 52.381 0.00 0.00 0.00 2.69
1900 2016 7.111247 TGGCAAATGGTAATCTTATCTTTGG 57.889 36.000 0.00 0.00 0.00 3.28
1908 2024 5.999205 TCACATTGGCAAATGGTAATCTT 57.001 34.783 18.12 0.00 46.34 2.40
1910 2026 4.508861 GCATCACATTGGCAAATGGTAATC 59.491 41.667 18.12 0.95 46.34 1.75
1911 2027 4.081031 TGCATCACATTGGCAAATGGTAAT 60.081 37.500 18.12 5.54 46.34 1.89
1913 2029 2.830321 TGCATCACATTGGCAAATGGTA 59.170 40.909 18.12 5.84 46.34 3.25
1914 2030 1.624312 TGCATCACATTGGCAAATGGT 59.376 42.857 18.12 0.00 46.34 3.55
1915 2031 2.004017 GTGCATCACATTGGCAAATGG 58.996 47.619 18.12 7.28 46.34 3.16
1940 2056 3.260128 AGTCTAAAAAGTACTCCACCGGG 59.740 47.826 6.32 0.00 0.00 5.73
1942 2058 3.678548 GCAGTCTAAAAAGTACTCCACCG 59.321 47.826 0.00 0.00 0.00 4.94
1944 2060 8.468399 ACTATAGCAGTCTAAAAAGTACTCCAC 58.532 37.037 0.00 0.00 28.33 4.02
1945 2061 8.467598 CACTATAGCAGTCTAAAAAGTACTCCA 58.532 37.037 0.00 0.00 34.26 3.86
1946 2062 7.435784 GCACTATAGCAGTCTAAAAAGTACTCC 59.564 40.741 0.00 0.00 34.26 3.85
1947 2063 7.974501 TGCACTATAGCAGTCTAAAAAGTACTC 59.025 37.037 0.00 0.00 40.11 2.59
1995 2117 1.629013 CAGACAAAGCGAGCGTATCA 58.371 50.000 0.00 0.00 0.00 2.15
2004 2126 1.938577 AGCAGATATGCAGACAAAGCG 59.061 47.619 15.82 0.00 37.25 4.68
2006 2128 4.393990 TCACAAGCAGATATGCAGACAAAG 59.606 41.667 15.82 0.00 37.25 2.77
2010 2132 3.063180 GTGTCACAAGCAGATATGCAGAC 59.937 47.826 15.82 15.67 37.25 3.51
2045 2168 7.548075 CCTTTGAATCAATCCTTGGAATCAAAG 59.452 37.037 18.40 18.40 43.95 2.77
2092 2215 1.981256 ACCAATTCCTCCACACACAC 58.019 50.000 0.00 0.00 0.00 3.82
2122 2246 4.335416 TCAAACAGGCTATGAAGGGAAAG 58.665 43.478 0.00 0.00 0.00 2.62
2149 2273 8.315482 GGAATATTCCTAAGGACTACAATCCTC 58.685 40.741 24.74 0.00 45.13 3.71
2157 2281 6.105740 TCCTCAGGGAATATTCCTAAGGACTA 59.894 42.308 29.57 18.48 46.72 2.59
2158 2282 5.102609 TCCTCAGGGAATATTCCTAAGGACT 60.103 44.000 29.57 19.14 46.72 3.85
2160 2284 5.434003 TCCTCAGGGAATATTCCTAAGGA 57.566 43.478 29.57 29.57 46.72 3.36
2161 2285 6.479884 CAATCCTCAGGGAATATTCCTAAGG 58.520 44.000 29.24 28.13 46.72 2.69
2162 2286 5.942826 GCAATCCTCAGGGAATATTCCTAAG 59.057 44.000 29.24 22.48 46.72 2.18
2163 2287 5.612688 AGCAATCCTCAGGGAATATTCCTAA 59.387 40.000 29.24 16.13 46.72 2.69
2169 2296 3.244840 GCAGAGCAATCCTCAGGGAATAT 60.245 47.826 0.00 0.00 45.78 1.28
2170 2297 2.105477 GCAGAGCAATCCTCAGGGAATA 59.895 50.000 0.00 0.00 45.78 1.75
2182 2309 2.812591 CAGAAACAGAGTGCAGAGCAAT 59.187 45.455 0.00 0.00 41.47 3.56
2183 2310 2.158914 TCAGAAACAGAGTGCAGAGCAA 60.159 45.455 0.00 0.00 41.47 3.91
2184 2311 1.413812 TCAGAAACAGAGTGCAGAGCA 59.586 47.619 0.00 0.00 35.60 4.26
2185 2312 2.160822 TCAGAAACAGAGTGCAGAGC 57.839 50.000 0.00 0.00 0.00 4.09
2186 2313 3.987547 TCTTCAGAAACAGAGTGCAGAG 58.012 45.455 0.00 0.00 0.00 3.35
2187 2314 4.406648 TTCTTCAGAAACAGAGTGCAGA 57.593 40.909 0.00 0.00 0.00 4.26
2188 2315 5.490139 TTTTCTTCAGAAACAGAGTGCAG 57.510 39.130 1.28 0.00 43.01 4.41
2189 2316 5.182950 TGTTTTTCTTCAGAAACAGAGTGCA 59.817 36.000 1.28 0.00 43.01 4.57
2190 2317 5.640732 TGTTTTTCTTCAGAAACAGAGTGC 58.359 37.500 1.28 0.00 43.01 4.40
2191 2318 7.433425 GGATTGTTTTTCTTCAGAAACAGAGTG 59.567 37.037 1.28 0.00 43.97 3.51
2192 2319 7.122650 TGGATTGTTTTTCTTCAGAAACAGAGT 59.877 33.333 1.28 0.00 43.97 3.24
2193 2320 7.483307 TGGATTGTTTTTCTTCAGAAACAGAG 58.517 34.615 1.28 0.00 43.97 3.35
2194 2321 7.403312 TGGATTGTTTTTCTTCAGAAACAGA 57.597 32.000 1.28 0.00 43.97 3.41
2195 2322 7.383300 GGATGGATTGTTTTTCTTCAGAAACAG 59.617 37.037 1.28 0.00 43.97 3.16
2196 2323 7.147759 TGGATGGATTGTTTTTCTTCAGAAACA 60.148 33.333 1.28 0.00 43.01 2.83
2197 2324 7.169813 GTGGATGGATTGTTTTTCTTCAGAAAC 59.830 37.037 1.28 0.00 43.01 2.78
2198 2325 7.069826 AGTGGATGGATTGTTTTTCTTCAGAAA 59.930 33.333 0.00 0.00 41.77 2.52
2199 2326 6.550854 AGTGGATGGATTGTTTTTCTTCAGAA 59.449 34.615 0.00 0.00 0.00 3.02
2200 2327 6.070656 AGTGGATGGATTGTTTTTCTTCAGA 58.929 36.000 0.00 0.00 0.00 3.27
2201 2328 6.208204 AGAGTGGATGGATTGTTTTTCTTCAG 59.792 38.462 0.00 0.00 0.00 3.02
2202 2329 6.016024 CAGAGTGGATGGATTGTTTTTCTTCA 60.016 38.462 0.00 0.00 0.00 3.02
2203 2330 6.015940 ACAGAGTGGATGGATTGTTTTTCTTC 60.016 38.462 0.00 0.00 0.00 2.87
2204 2331 5.835280 ACAGAGTGGATGGATTGTTTTTCTT 59.165 36.000 0.00 0.00 0.00 2.52
2205 2332 5.388654 ACAGAGTGGATGGATTGTTTTTCT 58.611 37.500 0.00 0.00 0.00 2.52
2206 2333 5.712152 ACAGAGTGGATGGATTGTTTTTC 57.288 39.130 0.00 0.00 0.00 2.29
2207 2334 6.324770 AGAAACAGAGTGGATGGATTGTTTTT 59.675 34.615 2.45 0.00 38.45 1.94
2208 2335 5.835280 AGAAACAGAGTGGATGGATTGTTTT 59.165 36.000 2.45 0.00 38.45 2.43
2209 2336 5.388654 AGAAACAGAGTGGATGGATTGTTT 58.611 37.500 0.56 0.56 40.32 2.83
2210 2337 4.990526 AGAAACAGAGTGGATGGATTGTT 58.009 39.130 0.00 0.00 0.00 2.83
2211 2338 4.647564 AGAAACAGAGTGGATGGATTGT 57.352 40.909 0.00 0.00 0.00 2.71
2212 2339 5.105997 GGAAAGAAACAGAGTGGATGGATTG 60.106 44.000 0.00 0.00 0.00 2.67
2213 2340 5.012893 GGAAAGAAACAGAGTGGATGGATT 58.987 41.667 0.00 0.00 0.00 3.01
2214 2341 4.290722 AGGAAAGAAACAGAGTGGATGGAT 59.709 41.667 0.00 0.00 0.00 3.41
2215 2342 3.652869 AGGAAAGAAACAGAGTGGATGGA 59.347 43.478 0.00 0.00 0.00 3.41
2216 2343 3.755378 CAGGAAAGAAACAGAGTGGATGG 59.245 47.826 0.00 0.00 0.00 3.51
2217 2344 4.214971 CACAGGAAAGAAACAGAGTGGATG 59.785 45.833 0.00 0.00 0.00 3.51
2218 2345 4.392940 CACAGGAAAGAAACAGAGTGGAT 58.607 43.478 0.00 0.00 0.00 3.41
2219 2346 3.433598 CCACAGGAAAGAAACAGAGTGGA 60.434 47.826 0.00 0.00 46.12 4.02
2220 2347 2.880890 CCACAGGAAAGAAACAGAGTGG 59.119 50.000 0.00 0.00 39.25 4.00
2221 2348 2.291741 GCCACAGGAAAGAAACAGAGTG 59.708 50.000 0.00 0.00 0.00 3.51
2222 2349 2.092429 TGCCACAGGAAAGAAACAGAGT 60.092 45.455 0.00 0.00 0.00 3.24
2223 2350 2.291741 GTGCCACAGGAAAGAAACAGAG 59.708 50.000 0.00 0.00 0.00 3.35
2224 2351 2.297701 GTGCCACAGGAAAGAAACAGA 58.702 47.619 0.00 0.00 0.00 3.41
2225 2352 1.338020 GGTGCCACAGGAAAGAAACAG 59.662 52.381 0.00 0.00 0.00 3.16
2226 2353 1.341482 TGGTGCCACAGGAAAGAAACA 60.341 47.619 0.00 0.00 0.00 2.83
2227 2354 1.398692 TGGTGCCACAGGAAAGAAAC 58.601 50.000 0.00 0.00 0.00 2.78
2228 2355 2.151502 TTGGTGCCACAGGAAAGAAA 57.848 45.000 0.00 0.00 0.00 2.52
2229 2356 1.754226 GTTTGGTGCCACAGGAAAGAA 59.246 47.619 0.00 0.00 0.00 2.52
2230 2357 1.064017 AGTTTGGTGCCACAGGAAAGA 60.064 47.619 0.00 0.00 0.00 2.52
2231 2358 1.402787 AGTTTGGTGCCACAGGAAAG 58.597 50.000 0.00 0.00 0.00 2.62
2232 2359 1.859302 AAGTTTGGTGCCACAGGAAA 58.141 45.000 0.00 0.00 0.00 3.13
2233 2360 1.859302 AAAGTTTGGTGCCACAGGAA 58.141 45.000 0.00 0.00 0.00 3.36
2234 2361 1.480137 CAAAAGTTTGGTGCCACAGGA 59.520 47.619 0.00 0.00 34.59 3.86
2235 2362 1.480137 TCAAAAGTTTGGTGCCACAGG 59.520 47.619 0.00 0.00 38.66 4.00
2236 2363 2.957491 TCAAAAGTTTGGTGCCACAG 57.043 45.000 0.00 0.00 38.66 3.66
2237 2364 2.762887 TCATCAAAAGTTTGGTGCCACA 59.237 40.909 11.43 0.00 46.27 4.17
2238 2365 3.451141 TCATCAAAAGTTTGGTGCCAC 57.549 42.857 11.43 0.00 46.27 5.01
2239 2366 3.006752 GGATCATCAAAAGTTTGGTGCCA 59.993 43.478 11.43 0.00 46.27 4.92
2240 2367 3.588955 GGATCATCAAAAGTTTGGTGCC 58.411 45.455 11.43 5.33 46.27 5.01
2241 2368 3.259123 AGGGATCATCAAAAGTTTGGTGC 59.741 43.478 11.43 0.29 46.27 5.01
2243 2370 3.259123 GCAGGGATCATCAAAAGTTTGGT 59.741 43.478 4.04 0.00 38.66 3.67
2244 2371 3.512724 AGCAGGGATCATCAAAAGTTTGG 59.487 43.478 4.04 0.00 38.66 3.28
2245 2372 4.796038 AGCAGGGATCATCAAAAGTTTG 57.204 40.909 0.00 0.00 39.48 2.93
2246 2373 4.834496 TCAAGCAGGGATCATCAAAAGTTT 59.166 37.500 0.00 0.00 0.00 2.66
2247 2374 4.410099 TCAAGCAGGGATCATCAAAAGTT 58.590 39.130 0.00 0.00 0.00 2.66
2248 2375 4.038271 TCAAGCAGGGATCATCAAAAGT 57.962 40.909 0.00 0.00 0.00 2.66
2249 2376 5.593679 ATTCAAGCAGGGATCATCAAAAG 57.406 39.130 0.00 0.00 0.00 2.27
2250 2377 6.211986 AGAAATTCAAGCAGGGATCATCAAAA 59.788 34.615 0.00 0.00 0.00 2.44
2251 2378 5.718130 AGAAATTCAAGCAGGGATCATCAAA 59.282 36.000 0.00 0.00 0.00 2.69
2252 2379 5.126545 CAGAAATTCAAGCAGGGATCATCAA 59.873 40.000 0.00 0.00 0.00 2.57
2253 2380 4.643334 CAGAAATTCAAGCAGGGATCATCA 59.357 41.667 0.00 0.00 0.00 3.07
2254 2381 4.643784 ACAGAAATTCAAGCAGGGATCATC 59.356 41.667 0.00 0.00 0.00 2.92
2255 2382 4.607239 ACAGAAATTCAAGCAGGGATCAT 58.393 39.130 0.00 0.00 0.00 2.45
2256 2383 4.012374 GACAGAAATTCAAGCAGGGATCA 58.988 43.478 0.00 0.00 0.00 2.92
2257 2384 4.012374 TGACAGAAATTCAAGCAGGGATC 58.988 43.478 0.00 0.00 0.00 3.36
2258 2385 4.015084 CTGACAGAAATTCAAGCAGGGAT 58.985 43.478 0.00 0.00 0.00 3.85
2259 2386 3.072915 TCTGACAGAAATTCAAGCAGGGA 59.927 43.478 1.64 0.00 0.00 4.20
2260 2387 3.415212 TCTGACAGAAATTCAAGCAGGG 58.585 45.455 1.64 0.00 0.00 4.45
2261 2388 5.640189 AATCTGACAGAAATTCAAGCAGG 57.360 39.130 9.70 0.00 0.00 4.85
2262 2389 6.128090 TGCTAATCTGACAGAAATTCAAGCAG 60.128 38.462 9.70 0.00 0.00 4.24
2263 2390 5.706833 TGCTAATCTGACAGAAATTCAAGCA 59.293 36.000 9.70 14.03 0.00 3.91
2264 2391 6.187125 TGCTAATCTGACAGAAATTCAAGC 57.813 37.500 9.70 11.88 0.00 4.01
2265 2392 9.713740 GTTATGCTAATCTGACAGAAATTCAAG 57.286 33.333 9.70 2.55 0.00 3.02
2266 2393 8.677300 GGTTATGCTAATCTGACAGAAATTCAA 58.323 33.333 9.70 0.00 0.00 2.69
2267 2394 7.828717 TGGTTATGCTAATCTGACAGAAATTCA 59.171 33.333 9.70 6.30 0.00 2.57
2268 2395 8.213518 TGGTTATGCTAATCTGACAGAAATTC 57.786 34.615 9.70 0.60 0.00 2.17
2269 2396 8.757982 ATGGTTATGCTAATCTGACAGAAATT 57.242 30.769 9.70 2.83 0.00 1.82
2270 2397 8.757982 AATGGTTATGCTAATCTGACAGAAAT 57.242 30.769 9.70 4.35 0.00 2.17
2271 2398 9.109393 GTAATGGTTATGCTAATCTGACAGAAA 57.891 33.333 9.70 0.00 0.00 2.52
2272 2399 8.264347 TGTAATGGTTATGCTAATCTGACAGAA 58.736 33.333 9.70 0.00 0.00 3.02
2273 2400 7.791029 TGTAATGGTTATGCTAATCTGACAGA 58.209 34.615 7.80 7.80 0.00 3.41
2274 2401 7.712639 ACTGTAATGGTTATGCTAATCTGACAG 59.287 37.037 0.00 0.00 35.37 3.51
2275 2402 7.564793 ACTGTAATGGTTATGCTAATCTGACA 58.435 34.615 0.00 0.00 0.00 3.58
2276 2403 8.979574 GTACTGTAATGGTTATGCTAATCTGAC 58.020 37.037 0.00 0.00 0.00 3.51
2277 2404 8.700973 TGTACTGTAATGGTTATGCTAATCTGA 58.299 33.333 0.00 0.00 0.00 3.27
2278 2405 8.887036 TGTACTGTAATGGTTATGCTAATCTG 57.113 34.615 0.00 0.00 0.00 2.90
2284 2411 9.681062 ACTTAAATGTACTGTAATGGTTATGCT 57.319 29.630 0.00 0.00 0.00 3.79
2285 2412 9.716507 CACTTAAATGTACTGTAATGGTTATGC 57.283 33.333 0.00 0.00 0.00 3.14
2286 2413 9.716507 GCACTTAAATGTACTGTAATGGTTATG 57.283 33.333 0.00 0.00 0.00 1.90
2287 2414 9.456147 TGCACTTAAATGTACTGTAATGGTTAT 57.544 29.630 0.00 0.00 0.00 1.89
2288 2415 8.850007 TGCACTTAAATGTACTGTAATGGTTA 57.150 30.769 0.00 0.00 0.00 2.85
2289 2416 7.753309 TGCACTTAAATGTACTGTAATGGTT 57.247 32.000 0.00 0.00 0.00 3.67
2290 2417 7.938140 ATGCACTTAAATGTACTGTAATGGT 57.062 32.000 0.00 0.00 0.00 3.55
2328 2455 9.598517 GTTCAATTAAGAATATGCATCCCAAAA 57.401 29.630 0.19 0.00 0.00 2.44
2329 2456 8.756927 TGTTCAATTAAGAATATGCATCCCAAA 58.243 29.630 0.19 0.00 0.00 3.28
2330 2457 8.303780 TGTTCAATTAAGAATATGCATCCCAA 57.696 30.769 0.19 0.00 0.00 4.12
2331 2458 7.894753 TGTTCAATTAAGAATATGCATCCCA 57.105 32.000 0.19 0.00 0.00 4.37
2332 2459 7.653311 GGTTGTTCAATTAAGAATATGCATCCC 59.347 37.037 0.19 0.00 0.00 3.85
2333 2460 8.196771 TGGTTGTTCAATTAAGAATATGCATCC 58.803 33.333 0.19 0.00 0.00 3.51
2334 2461 9.241317 CTGGTTGTTCAATTAAGAATATGCATC 57.759 33.333 0.19 0.00 0.00 3.91
2335 2462 8.970020 TCTGGTTGTTCAATTAAGAATATGCAT 58.030 29.630 3.79 3.79 0.00 3.96
2336 2463 8.347004 TCTGGTTGTTCAATTAAGAATATGCA 57.653 30.769 0.00 0.00 0.00 3.96
2337 2464 9.638239 TTTCTGGTTGTTCAATTAAGAATATGC 57.362 29.630 7.69 0.00 0.00 3.14
2345 2472 9.883142 AGTTTCAATTTCTGGTTGTTCAATTAA 57.117 25.926 0.00 0.00 0.00 1.40
2346 2473 9.883142 AAGTTTCAATTTCTGGTTGTTCAATTA 57.117 25.926 0.00 0.00 0.00 1.40
2347 2474 8.791327 AAGTTTCAATTTCTGGTTGTTCAATT 57.209 26.923 0.00 0.00 0.00 2.32
2349 2476 9.311916 CATAAGTTTCAATTTCTGGTTGTTCAA 57.688 29.630 0.00 0.00 0.00 2.69
2350 2477 8.690884 TCATAAGTTTCAATTTCTGGTTGTTCA 58.309 29.630 0.00 0.00 0.00 3.18
2351 2478 9.528018 TTCATAAGTTTCAATTTCTGGTTGTTC 57.472 29.630 0.00 0.00 0.00 3.18
2352 2479 9.883142 TTTCATAAGTTTCAATTTCTGGTTGTT 57.117 25.926 0.00 0.00 0.00 2.83
2353 2480 9.313118 GTTTCATAAGTTTCAATTTCTGGTTGT 57.687 29.630 0.00 0.00 0.00 3.32
2354 2481 9.311916 TGTTTCATAAGTTTCAATTTCTGGTTG 57.688 29.630 0.00 0.00 0.00 3.77
2355 2482 9.883142 TTGTTTCATAAGTTTCAATTTCTGGTT 57.117 25.926 0.00 0.00 0.00 3.67
2356 2483 9.883142 TTTGTTTCATAAGTTTCAATTTCTGGT 57.117 25.926 0.00 0.00 0.00 4.00
2389 2516 9.598517 GTTCAATTAAGAATATGCATCCCAAAA 57.401 29.630 0.19 0.00 0.00 2.44
2390 2517 8.756927 TGTTCAATTAAGAATATGCATCCCAAA 58.243 29.630 0.19 0.00 0.00 3.28
2391 2518 8.303780 TGTTCAATTAAGAATATGCATCCCAA 57.696 30.769 0.19 0.00 0.00 4.12
2392 2519 7.894753 TGTTCAATTAAGAATATGCATCCCA 57.105 32.000 0.19 0.00 0.00 4.37
2393 2520 7.653311 GGTTGTTCAATTAAGAATATGCATCCC 59.347 37.037 0.19 0.00 0.00 3.85
2394 2521 8.196771 TGGTTGTTCAATTAAGAATATGCATCC 58.803 33.333 0.19 0.00 0.00 3.51
2395 2522 9.241317 CTGGTTGTTCAATTAAGAATATGCATC 57.759 33.333 0.19 0.00 0.00 3.91
2396 2523 8.970020 TCTGGTTGTTCAATTAAGAATATGCAT 58.030 29.630 3.79 3.79 0.00 3.96
2397 2524 8.347004 TCTGGTTGTTCAATTAAGAATATGCA 57.653 30.769 0.00 0.00 0.00 3.96
2398 2525 9.638239 TTTCTGGTTGTTCAATTAAGAATATGC 57.362 29.630 7.69 0.00 0.00 3.14
2406 2533 9.883142 AGTTTCAATTTCTGGTTGTTCAATTAA 57.117 25.926 0.00 0.00 0.00 1.40
2407 2534 9.883142 AAGTTTCAATTTCTGGTTGTTCAATTA 57.117 25.926 0.00 0.00 0.00 1.40
2408 2535 8.791327 AAGTTTCAATTTCTGGTTGTTCAATT 57.209 26.923 0.00 0.00 0.00 2.32
2410 2537 9.311916 CATAAGTTTCAATTTCTGGTTGTTCAA 57.688 29.630 0.00 0.00 0.00 2.69
2411 2538 8.690884 TCATAAGTTTCAATTTCTGGTTGTTCA 58.309 29.630 0.00 0.00 0.00 3.18
2412 2539 9.528018 TTCATAAGTTTCAATTTCTGGTTGTTC 57.472 29.630 0.00 0.00 0.00 3.18
2413 2540 9.883142 TTTCATAAGTTTCAATTTCTGGTTGTT 57.117 25.926 0.00 0.00 0.00 2.83
2414 2541 9.313118 GTTTCATAAGTTTCAATTTCTGGTTGT 57.687 29.630 0.00 0.00 0.00 3.32
2415 2542 9.311916 TGTTTCATAAGTTTCAATTTCTGGTTG 57.688 29.630 0.00 0.00 0.00 3.77
2416 2543 9.883142 TTGTTTCATAAGTTTCAATTTCTGGTT 57.117 25.926 0.00 0.00 0.00 3.67
2417 2544 9.883142 TTTGTTTCATAAGTTTCAATTTCTGGT 57.117 25.926 0.00 0.00 0.00 4.00
2419 2546 9.833894 CGTTTGTTTCATAAGTTTCAATTTCTG 57.166 29.630 0.00 0.00 0.00 3.02
2420 2547 9.030301 CCGTTTGTTTCATAAGTTTCAATTTCT 57.970 29.630 0.00 0.00 0.00 2.52
2421 2548 9.026074 TCCGTTTGTTTCATAAGTTTCAATTTC 57.974 29.630 0.00 0.00 0.00 2.17
2422 2549 8.934507 TCCGTTTGTTTCATAAGTTTCAATTT 57.065 26.923 0.00 0.00 0.00 1.82
2423 2550 8.934507 TTCCGTTTGTTTCATAAGTTTCAATT 57.065 26.923 0.00 0.00 0.00 2.32
2424 2551 8.934507 TTTCCGTTTGTTTCATAAGTTTCAAT 57.065 26.923 0.00 0.00 0.00 2.57
2425 2552 8.758633 TTTTCCGTTTGTTTCATAAGTTTCAA 57.241 26.923 0.00 0.00 0.00 2.69
2426 2553 8.244802 TCTTTTCCGTTTGTTTCATAAGTTTCA 58.755 29.630 0.00 0.00 0.00 2.69
2427 2554 8.623310 TCTTTTCCGTTTGTTTCATAAGTTTC 57.377 30.769 0.00 0.00 0.00 2.78
2428 2555 7.704899 CCTCTTTTCCGTTTGTTTCATAAGTTT 59.295 33.333 0.00 0.00 0.00 2.66
2429 2556 7.067737 TCCTCTTTTCCGTTTGTTTCATAAGTT 59.932 33.333 0.00 0.00 0.00 2.66
2430 2557 6.544564 TCCTCTTTTCCGTTTGTTTCATAAGT 59.455 34.615 0.00 0.00 0.00 2.24
2431 2558 6.966021 TCCTCTTTTCCGTTTGTTTCATAAG 58.034 36.000 0.00 0.00 0.00 1.73
2432 2559 6.945938 TCCTCTTTTCCGTTTGTTTCATAA 57.054 33.333 0.00 0.00 0.00 1.90
2433 2560 6.319152 TGTTCCTCTTTTCCGTTTGTTTCATA 59.681 34.615 0.00 0.00 0.00 2.15
2434 2561 5.126384 TGTTCCTCTTTTCCGTTTGTTTCAT 59.874 36.000 0.00 0.00 0.00 2.57
2435 2562 4.459685 TGTTCCTCTTTTCCGTTTGTTTCA 59.540 37.500 0.00 0.00 0.00 2.69
2436 2563 4.796830 GTGTTCCTCTTTTCCGTTTGTTTC 59.203 41.667 0.00 0.00 0.00 2.78
2437 2564 4.673320 CGTGTTCCTCTTTTCCGTTTGTTT 60.673 41.667 0.00 0.00 0.00 2.83
2438 2565 3.181504 CGTGTTCCTCTTTTCCGTTTGTT 60.182 43.478 0.00 0.00 0.00 2.83
2439 2566 2.353579 CGTGTTCCTCTTTTCCGTTTGT 59.646 45.455 0.00 0.00 0.00 2.83
2440 2567 2.853281 GCGTGTTCCTCTTTTCCGTTTG 60.853 50.000 0.00 0.00 0.00 2.93
2441 2568 1.332686 GCGTGTTCCTCTTTTCCGTTT 59.667 47.619 0.00 0.00 0.00 3.60
2442 2569 0.942252 GCGTGTTCCTCTTTTCCGTT 59.058 50.000 0.00 0.00 0.00 4.44
2443 2570 0.106149 AGCGTGTTCCTCTTTTCCGT 59.894 50.000 0.00 0.00 0.00 4.69
2444 2571 1.226746 AAGCGTGTTCCTCTTTTCCG 58.773 50.000 0.00 0.00 0.00 4.30
2445 2572 3.562557 TGTTAAGCGTGTTCCTCTTTTCC 59.437 43.478 0.00 0.00 0.00 3.13
2446 2573 4.806342 TGTTAAGCGTGTTCCTCTTTTC 57.194 40.909 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.