Multiple sequence alignment - TraesCS5A01G388900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G388900 chr5A 100.000 4902 0 0 1 4902 585212696 585217597 0.000000e+00 9053.0
1 TraesCS5A01G388900 chr5A 87.373 491 62 0 3415 3905 585020954 585021444 9.210000e-157 564.0
2 TraesCS5A01G388900 chr5A 78.224 946 146 37 1699 2638 585019329 585020220 7.170000e-153 551.0
3 TraesCS5A01G388900 chr5A 85.799 507 72 0 3410 3916 585070297 585070803 5.580000e-149 538.0
4 TraesCS5A01G388900 chr5A 81.364 601 85 21 951 1549 585018640 585019215 9.610000e-127 464.0
5 TraesCS5A01G388900 chr5A 83.806 494 66 11 2879 3366 585069726 585070211 1.610000e-124 457.0
6 TraesCS5A01G388900 chr5A 75.567 970 180 40 1699 2638 585068100 585069042 4.540000e-115 425.0
7 TraesCS5A01G388900 chr5A 74.376 1081 197 58 997 2054 585075324 585076347 5.950000e-104 388.0
8 TraesCS5A01G388900 chr5A 80.244 491 93 4 2879 3367 585077503 585077991 2.790000e-97 366.0
9 TraesCS5A01G388900 chr5A 88.000 75 9 0 3249 3323 585398448 585398522 6.760000e-14 89.8
10 TraesCS5A01G388900 chr5D 93.609 2300 108 9 1680 3947 464816292 464818584 0.000000e+00 3397.0
11 TraesCS5A01G388900 chr5D 91.183 930 54 16 731 1645 464814976 464815892 0.000000e+00 1238.0
12 TraesCS5A01G388900 chr5D 81.793 1071 150 25 2879 3909 464605264 464606329 0.000000e+00 856.0
13 TraesCS5A01G388900 chr5D 84.783 506 77 0 3411 3916 464620075 464620580 4.380000e-140 508.0
14 TraesCS5A01G388900 chr5D 81.000 600 79 23 951 1548 464603431 464603997 1.250000e-120 444.0
15 TraesCS5A01G388900 chr5D 83.164 493 73 8 2879 3367 464619503 464619989 4.500000e-120 442.0
16 TraesCS5A01G388900 chr5D 81.353 606 55 19 35 619 464814402 464814970 1.620000e-119 440.0
17 TraesCS5A01G388900 chr5D 82.389 494 82 3 2147 2638 464604547 464605037 4.540000e-115 425.0
18 TraesCS5A01G388900 chr5D 75.524 1001 174 50 1083 2064 464641677 464642625 4.540000e-115 425.0
19 TraesCS5A01G388900 chr5D 80.652 491 91 4 2879 3367 464659335 464659823 1.290000e-100 377.0
20 TraesCS5A01G388900 chr5D 88.889 153 17 0 1902 2054 464618531 464618683 6.480000e-44 189.0
21 TraesCS5A01G388900 chr5D 90.090 111 11 0 1699 1809 464618019 464618129 1.420000e-30 145.0
22 TraesCS5A01G388900 chr5B 91.093 1976 103 27 723 2653 571557841 571555894 0.000000e+00 2606.0
23 TraesCS5A01G388900 chr5B 95.074 609 28 2 3382 3989 571555158 571554551 0.000000e+00 957.0
24 TraesCS5A01G388900 chr5B 92.857 644 31 7 2747 3381 571555823 571555186 0.000000e+00 920.0
25 TraesCS5A01G388900 chr5B 87.774 638 63 12 3492 4126 572127260 572127885 0.000000e+00 732.0
26 TraesCS5A01G388900 chr5B 74.059 1673 314 83 997 2638 571640996 571639413 4.260000e-160 575.0
27 TraesCS5A01G388900 chr5B 87.071 495 64 0 3415 3909 571717837 571717343 1.190000e-155 560.0
28 TraesCS5A01G388900 chr5B 82.972 646 58 17 4 620 571558460 571557838 2.010000e-148 536.0
29 TraesCS5A01G388900 chr5B 86.327 490 67 0 3415 3904 571708828 571708339 7.220000e-148 534.0
30 TraesCS5A01G388900 chr5B 89.163 406 41 3 4463 4866 571553916 571553512 2.040000e-138 503.0
31 TraesCS5A01G388900 chr5B 82.393 585 75 20 967 1549 571720263 571719705 7.380000e-133 484.0
32 TraesCS5A01G388900 chr5B 76.343 968 186 28 1699 2638 571710701 571709749 3.430000e-131 479.0
33 TraesCS5A01G388900 chr5B 82.996 494 73 10 2879 3367 571639046 571638559 2.100000e-118 436.0
34 TraesCS5A01G388900 chr5B 82.411 506 77 10 2879 3379 571709407 571708909 9.750000e-117 431.0
35 TraesCS5A01G388900 chr5B 81.526 498 81 7 2147 2638 571719155 571718663 2.750000e-107 399.0
36 TraesCS5A01G388900 chr5B 87.983 233 23 5 4249 4480 571554216 571553988 2.250000e-68 270.0
37 TraesCS5A01G388900 chr5B 80.441 363 57 8 1696 2057 571719563 571719214 1.050000e-66 265.0
38 TraesCS5A01G388900 chr5B 86.283 226 31 0 2879 3104 571718435 571718210 3.790000e-61 246.0
39 TraesCS5A01G388900 chr5B 83.945 218 34 1 3150 3366 571718140 571717923 1.790000e-49 207.0
40 TraesCS5A01G388900 chr5B 83.938 193 16 11 4059 4251 571554422 571554245 2.350000e-38 171.0
41 TraesCS5A01G388900 chr5B 88.000 75 9 0 3249 3323 572343560 572343634 6.760000e-14 89.8
42 TraesCS5A01G388900 chr5B 97.619 42 1 0 4020 4061 571554544 571554503 6.810000e-09 73.1
43 TraesCS5A01G388900 chr7B 100.000 108 0 0 619 726 735980191 735980084 2.990000e-47 200.0
44 TraesCS5A01G388900 chr7B 97.345 113 2 1 618 729 750444582 750444694 1.800000e-44 191.0
45 TraesCS5A01G388900 chr7A 100.000 108 0 0 619 726 277729309 277729202 2.990000e-47 200.0
46 TraesCS5A01G388900 chr7A 100.000 108 0 0 619 726 694064015 694063908 2.990000e-47 200.0
47 TraesCS5A01G388900 chr7A 96.460 113 4 0 614 726 685837734 685837622 2.330000e-43 187.0
48 TraesCS5A01G388900 chr6A 100.000 108 0 0 619 726 499656178 499656071 2.990000e-47 200.0
49 TraesCS5A01G388900 chr6A 96.460 113 3 1 615 726 579148207 579148319 8.380000e-43 185.0
50 TraesCS5A01G388900 chr3A 98.214 112 1 1 619 729 46996208 46996319 1.390000e-45 195.0
51 TraesCS5A01G388900 chr1B 90.299 134 13 0 601 734 384230546 384230679 5.040000e-40 176.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G388900 chr5A 585212696 585217597 4901 False 9053.000000 9053 100.000000 1 4902 1 chr5A.!!$F1 4901
1 TraesCS5A01G388900 chr5A 585018640 585021444 2804 False 526.333333 564 82.320333 951 3905 3 chr5A.!!$F3 2954
2 TraesCS5A01G388900 chr5A 585068100 585070803 2703 False 473.333333 538 81.724000 1699 3916 3 chr5A.!!$F4 2217
3 TraesCS5A01G388900 chr5A 585075324 585077991 2667 False 377.000000 388 77.310000 997 3367 2 chr5A.!!$F5 2370
4 TraesCS5A01G388900 chr5D 464814402 464818584 4182 False 1691.666667 3397 88.715000 35 3947 3 chr5D.!!$F5 3912
5 TraesCS5A01G388900 chr5D 464603431 464606329 2898 False 575.000000 856 81.727333 951 3909 3 chr5D.!!$F3 2958
6 TraesCS5A01G388900 chr5D 464641677 464642625 948 False 425.000000 425 75.524000 1083 2064 1 chr5D.!!$F1 981
7 TraesCS5A01G388900 chr5D 464618019 464620580 2561 False 321.000000 508 86.731500 1699 3916 4 chr5D.!!$F4 2217
8 TraesCS5A01G388900 chr5B 571553512 571558460 4948 True 754.512500 2606 90.087375 4 4866 8 chr5B.!!$R1 4862
9 TraesCS5A01G388900 chr5B 572127260 572127885 625 False 732.000000 732 87.774000 3492 4126 1 chr5B.!!$F1 634
10 TraesCS5A01G388900 chr5B 571638559 571640996 2437 True 505.500000 575 78.527500 997 3367 2 chr5B.!!$R2 2370
11 TraesCS5A01G388900 chr5B 571708339 571710701 2362 True 481.333333 534 81.693667 1699 3904 3 chr5B.!!$R3 2205
12 TraesCS5A01G388900 chr5B 571717343 571720263 2920 True 360.166667 560 83.609833 967 3909 6 chr5B.!!$R4 2942

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 165 0.038310 TCTCACTTCCTCGCCTCTCA 59.962 55.0 0.0 0.00 0.00 3.27 F
166 171 0.039180 TTCCTCGCCTCTCACTACCA 59.961 55.0 0.0 0.00 0.00 3.25 F
1615 1714 0.166814 AAGCTGTGAATTTCTCGCGC 59.833 50.0 0.0 0.00 37.37 6.86 F
2006 2801 0.034767 TCATCTCTGGCTTGCAAGGG 60.035 55.0 27.1 2.16 0.00 3.95 F
3769 5586 1.227999 CCGACGTGCTGTTTGGTGAT 61.228 55.0 0.0 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1423 1486 0.828022 TCATCGGAATACCAAGCCGT 59.172 50.000 0.00 0.0 45.02 5.68 R
1695 2159 1.140312 GCATAGGGTCCCTGGAATGA 58.860 55.000 21.83 0.0 34.61 2.57 R
2993 4727 1.774254 AGACCCATGGTGAACTTGACA 59.226 47.619 11.73 0.0 35.25 3.58 R
3894 5711 0.249120 ATCGCACCGGACTCATTTCA 59.751 50.000 9.46 0.0 0.00 2.69 R
4716 6742 1.483424 GAGTTGCAGTATCGCCGCTC 61.483 60.000 0.00 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 4.074526 TCGCTGGAGCTGGAGTGC 62.075 66.667 0.00 0.00 39.32 4.40
30 31 3.715097 GCTGGAGCTGGAGTGCCT 61.715 66.667 0.00 0.00 38.21 4.75
31 32 2.583520 CTGGAGCTGGAGTGCCTC 59.416 66.667 0.00 0.00 34.31 4.70
32 33 1.988956 CTGGAGCTGGAGTGCCTCT 60.989 63.158 0.00 0.00 34.31 3.69
33 34 1.958902 CTGGAGCTGGAGTGCCTCTC 61.959 65.000 0.00 0.61 42.07 3.20
58 59 1.097232 CATGGAAAATGCTCTCGCCA 58.903 50.000 0.00 0.00 34.43 5.69
74 79 1.271379 CGCCAGGGGAAGAAAGAAGAA 60.271 52.381 0.00 0.00 0.00 2.52
78 83 3.436470 CCAGGGGAAGAAAGAAGAAACCA 60.436 47.826 0.00 0.00 0.00 3.67
82 87 4.649674 GGGGAAGAAAGAAGAAACCACTTT 59.350 41.667 0.00 0.00 36.71 2.66
83 88 5.451937 GGGGAAGAAAGAAGAAACCACTTTG 60.452 44.000 0.00 0.00 34.63 2.77
84 89 5.451937 GGGAAGAAAGAAGAAACCACTTTGG 60.452 44.000 0.00 0.00 45.02 3.28
129 134 3.076032 AGGGGATAAATACCATTGCCCTC 59.924 47.826 0.00 0.00 46.03 4.30
148 153 2.740055 CGCGCCAAGCTCTCACTT 60.740 61.111 0.00 0.00 45.59 3.16
160 165 0.038310 TCTCACTTCCTCGCCTCTCA 59.962 55.000 0.00 0.00 0.00 3.27
165 170 0.741915 CTTCCTCGCCTCTCACTACC 59.258 60.000 0.00 0.00 0.00 3.18
166 171 0.039180 TTCCTCGCCTCTCACTACCA 59.961 55.000 0.00 0.00 0.00 3.25
176 203 1.644337 TCTCACTACCAGGGGAAGCTA 59.356 52.381 0.00 0.00 0.00 3.32
177 204 1.757699 CTCACTACCAGGGGAAGCTAC 59.242 57.143 0.00 0.00 0.00 3.58
208 235 7.056844 AGGTATACTGCTCTTCAGATTTACC 57.943 40.000 2.25 6.72 45.72 2.85
217 244 6.546403 TGCTCTTCAGATTTACCGTACTATCT 59.454 38.462 0.00 0.00 0.00 1.98
248 275 4.563061 GCTGCTGTTGAATTTCCAGATTT 58.437 39.130 6.80 0.00 0.00 2.17
261 288 9.617975 GAATTTCCAGATTTTCAGAAACTGTAG 57.382 33.333 10.93 0.54 31.51 2.74
269 296 5.514500 TTTCAGAAACTGTAGCCCCTATT 57.486 39.130 0.00 0.00 32.61 1.73
291 318 3.176708 GTGCTCTGTTTATGCTGCATTG 58.823 45.455 21.56 6.68 32.98 2.82
314 341 4.099419 GTCTGTTTCTGTTTTCCACCCATT 59.901 41.667 0.00 0.00 0.00 3.16
320 347 3.386402 TCTGTTTTCCACCCATTTGTTCC 59.614 43.478 0.00 0.00 0.00 3.62
324 351 1.905843 CCACCCATTTGTTCCGCCA 60.906 57.895 0.00 0.00 0.00 5.69
360 387 4.355720 CAGGGCCAGGCTGCTTGA 62.356 66.667 13.84 0.00 0.00 3.02
373 400 2.806745 GCTGCTTGATGTTCCGCCTATA 60.807 50.000 0.00 0.00 0.00 1.31
374 401 3.466836 CTGCTTGATGTTCCGCCTATAA 58.533 45.455 0.00 0.00 0.00 0.98
375 402 3.876914 CTGCTTGATGTTCCGCCTATAAA 59.123 43.478 0.00 0.00 0.00 1.40
376 403 4.265893 TGCTTGATGTTCCGCCTATAAAA 58.734 39.130 0.00 0.00 0.00 1.52
377 404 4.887071 TGCTTGATGTTCCGCCTATAAAAT 59.113 37.500 0.00 0.00 0.00 1.82
378 405 6.058833 TGCTTGATGTTCCGCCTATAAAATA 58.941 36.000 0.00 0.00 0.00 1.40
389 416 8.220755 TCCGCCTATAAAATATAAATCATGCC 57.779 34.615 0.00 0.00 0.00 4.40
423 453 3.837146 ACATTATGTGTTTTGGGCCATGA 59.163 39.130 7.26 0.00 38.01 3.07
436 466 1.632920 GGCCATGAAAATTGGGGGAAA 59.367 47.619 0.00 0.00 34.66 3.13
437 467 2.040947 GGCCATGAAAATTGGGGGAAAA 59.959 45.455 0.00 0.00 34.66 2.29
450 480 3.143168 TGGGGGAAAACTTACCTGGATTT 59.857 43.478 0.00 0.00 0.00 2.17
453 483 5.517833 GGGGGAAAACTTACCTGGATTTAGT 60.518 44.000 0.00 0.00 0.00 2.24
496 526 3.181520 CGTGCAAAACCAGCTACTCATAC 60.182 47.826 0.00 0.00 0.00 2.39
504 534 1.135139 CAGCTACTCATACCGTGCACT 59.865 52.381 16.19 0.00 0.00 4.40
517 547 1.388547 GTGCACTGGAGAACAACCAA 58.611 50.000 10.32 0.00 36.95 3.67
532 562 3.444742 ACAACCAACAGATATGCACATGG 59.555 43.478 0.00 0.00 0.00 3.66
533 563 2.026641 ACCAACAGATATGCACATGGC 58.973 47.619 0.00 0.00 45.13 4.40
534 564 1.338973 CCAACAGATATGCACATGGCC 59.661 52.381 0.00 0.00 43.89 5.36
535 565 2.025898 CAACAGATATGCACATGGCCA 58.974 47.619 8.56 8.56 43.89 5.36
536 566 1.977056 ACAGATATGCACATGGCCAG 58.023 50.000 13.05 6.08 43.89 4.85
537 567 1.491754 ACAGATATGCACATGGCCAGA 59.508 47.619 13.05 0.00 43.89 3.86
538 568 2.107726 ACAGATATGCACATGGCCAGAT 59.892 45.455 13.05 0.00 43.89 2.90
539 569 2.488153 CAGATATGCACATGGCCAGATG 59.512 50.000 13.05 13.35 43.89 2.90
589 619 1.149627 CGGTCCTTGTCCAAACCCA 59.850 57.895 0.00 0.00 0.00 4.51
597 627 3.256631 CCTTGTCCAAACCCATTCTTGAG 59.743 47.826 0.00 0.00 0.00 3.02
620 650 7.040961 TGAGCAACATTACCTGGTTTTAAGTAC 60.041 37.037 3.84 0.00 0.00 2.73
622 652 7.174426 AGCAACATTACCTGGTTTTAAGTACTC 59.826 37.037 3.84 0.00 0.00 2.59
623 653 7.574404 GCAACATTACCTGGTTTTAAGTACTCC 60.574 40.741 3.84 0.00 0.00 3.85
624 654 6.479006 ACATTACCTGGTTTTAAGTACTCCC 58.521 40.000 3.84 0.00 0.00 4.30
625 655 6.273965 ACATTACCTGGTTTTAAGTACTCCCT 59.726 38.462 3.84 0.00 0.00 4.20
626 656 4.904895 ACCTGGTTTTAAGTACTCCCTC 57.095 45.455 0.00 0.00 0.00 4.30
627 657 4.500452 ACCTGGTTTTAAGTACTCCCTCT 58.500 43.478 0.00 0.00 0.00 3.69
628 658 4.286291 ACCTGGTTTTAAGTACTCCCTCTG 59.714 45.833 0.00 0.00 0.00 3.35
629 659 4.286291 CCTGGTTTTAAGTACTCCCTCTGT 59.714 45.833 0.00 0.00 0.00 3.41
630 660 5.221864 CCTGGTTTTAAGTACTCCCTCTGTT 60.222 44.000 0.00 0.00 0.00 3.16
631 661 5.861727 TGGTTTTAAGTACTCCCTCTGTTC 58.138 41.667 0.00 0.00 0.00 3.18
632 662 5.367352 TGGTTTTAAGTACTCCCTCTGTTCA 59.633 40.000 0.00 0.00 0.00 3.18
633 663 5.699915 GGTTTTAAGTACTCCCTCTGTTCAC 59.300 44.000 0.00 0.00 0.00 3.18
634 664 6.464039 GGTTTTAAGTACTCCCTCTGTTCACT 60.464 42.308 0.00 0.00 0.00 3.41
635 665 6.742559 TTTAAGTACTCCCTCTGTTCACTT 57.257 37.500 0.00 0.00 0.00 3.16
636 666 6.742559 TTAAGTACTCCCTCTGTTCACTTT 57.257 37.500 0.00 0.00 0.00 2.66
637 667 5.632034 AAGTACTCCCTCTGTTCACTTTT 57.368 39.130 0.00 0.00 0.00 2.27
638 668 6.742559 AAGTACTCCCTCTGTTCACTTTTA 57.257 37.500 0.00 0.00 0.00 1.52
639 669 6.936968 AGTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
640 670 8.431910 AAGTACTCCCTCTGTTCACTTTTATA 57.568 34.615 0.00 0.00 0.00 0.98
641 671 8.431910 AGTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
642 672 8.532819 AGTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
643 673 7.554959 ACTCCCTCTGTTCACTTTTATAAGA 57.445 36.000 0.00 0.00 35.30 2.10
644 674 7.387643 ACTCCCTCTGTTCACTTTTATAAGAC 58.612 38.462 0.00 0.00 35.30 3.01
645 675 6.708285 TCCCTCTGTTCACTTTTATAAGACC 58.292 40.000 0.00 0.00 35.30 3.85
646 676 6.500751 TCCCTCTGTTCACTTTTATAAGACCT 59.499 38.462 0.00 0.00 35.30 3.85
647 677 7.017254 TCCCTCTGTTCACTTTTATAAGACCTT 59.983 37.037 0.00 0.00 35.30 3.50
648 678 7.334671 CCCTCTGTTCACTTTTATAAGACCTTC 59.665 40.741 0.00 0.00 35.30 3.46
649 679 7.878127 CCTCTGTTCACTTTTATAAGACCTTCA 59.122 37.037 0.00 0.00 35.30 3.02
650 680 9.273016 CTCTGTTCACTTTTATAAGACCTTCAA 57.727 33.333 0.00 0.00 35.30 2.69
651 681 9.273016 TCTGTTCACTTTTATAAGACCTTCAAG 57.727 33.333 0.00 0.00 35.30 3.02
652 682 9.273016 CTGTTCACTTTTATAAGACCTTCAAGA 57.727 33.333 0.00 0.00 35.30 3.02
653 683 9.793259 TGTTCACTTTTATAAGACCTTCAAGAT 57.207 29.630 0.00 0.00 35.30 2.40
666 696 8.503458 AGACCTTCAAGATATTTCAGACAATG 57.497 34.615 0.00 0.00 0.00 2.82
667 697 8.105829 AGACCTTCAAGATATTTCAGACAATGT 58.894 33.333 0.00 0.00 0.00 2.71
668 698 9.383519 GACCTTCAAGATATTTCAGACAATGTA 57.616 33.333 0.00 0.00 0.00 2.29
669 699 9.167311 ACCTTCAAGATATTTCAGACAATGTAC 57.833 33.333 0.00 0.00 0.00 2.90
670 700 9.166173 CCTTCAAGATATTTCAGACAATGTACA 57.834 33.333 0.00 0.00 0.00 2.90
677 707 8.970691 ATATTTCAGACAATGTACAAAACAGC 57.029 30.769 0.00 0.00 42.70 4.40
678 708 4.829064 TCAGACAATGTACAAAACAGCC 57.171 40.909 0.00 0.00 42.70 4.85
679 709 3.568007 TCAGACAATGTACAAAACAGCCC 59.432 43.478 0.00 0.00 42.70 5.19
680 710 3.317711 CAGACAATGTACAAAACAGCCCA 59.682 43.478 0.00 0.00 42.70 5.36
681 711 4.022068 CAGACAATGTACAAAACAGCCCAT 60.022 41.667 0.00 0.00 42.70 4.00
682 712 4.588528 AGACAATGTACAAAACAGCCCATT 59.411 37.500 0.00 0.00 42.70 3.16
683 713 5.070313 AGACAATGTACAAAACAGCCCATTT 59.930 36.000 0.00 0.00 42.70 2.32
684 714 5.679601 ACAATGTACAAAACAGCCCATTTT 58.320 33.333 0.00 0.00 42.70 1.82
686 716 5.543507 ATGTACAAAACAGCCCATTTTGA 57.456 34.783 19.09 3.50 45.75 2.69
687 717 4.942852 TGTACAAAACAGCCCATTTTGAG 58.057 39.130 19.09 1.00 45.75 3.02
688 718 2.837498 ACAAAACAGCCCATTTTGAGC 58.163 42.857 19.09 0.00 45.75 4.26
689 719 2.435437 ACAAAACAGCCCATTTTGAGCT 59.565 40.909 19.09 0.00 45.75 4.09
694 724 1.542492 AGCCCATTTTGAGCTGTCTG 58.458 50.000 0.00 0.00 34.99 3.51
695 725 1.074405 AGCCCATTTTGAGCTGTCTGA 59.926 47.619 0.00 0.00 34.99 3.27
696 726 1.888512 GCCCATTTTGAGCTGTCTGAA 59.111 47.619 0.00 0.00 0.00 3.02
697 727 2.297033 GCCCATTTTGAGCTGTCTGAAA 59.703 45.455 0.00 0.00 0.00 2.69
698 728 3.056322 GCCCATTTTGAGCTGTCTGAAAT 60.056 43.478 0.00 0.00 0.00 2.17
699 729 4.491676 CCCATTTTGAGCTGTCTGAAATG 58.508 43.478 0.00 0.57 37.04 2.32
700 730 4.219070 CCCATTTTGAGCTGTCTGAAATGA 59.781 41.667 13.84 0.00 38.18 2.57
701 731 5.159209 CCATTTTGAGCTGTCTGAAATGAC 58.841 41.667 13.84 0.00 38.18 3.06
702 732 5.048224 CCATTTTGAGCTGTCTGAAATGACT 60.048 40.000 13.84 0.00 38.18 3.41
703 733 6.444633 CATTTTGAGCTGTCTGAAATGACTT 58.555 36.000 0.00 0.00 38.18 3.01
704 734 7.308770 CCATTTTGAGCTGTCTGAAATGACTTA 60.309 37.037 13.84 0.00 38.18 2.24
705 735 6.545504 TTTGAGCTGTCTGAAATGACTTAC 57.454 37.500 0.00 0.00 37.79 2.34
706 736 5.213891 TGAGCTGTCTGAAATGACTTACA 57.786 39.130 0.00 0.00 37.79 2.41
707 737 5.610398 TGAGCTGTCTGAAATGACTTACAA 58.390 37.500 0.00 0.00 37.79 2.41
708 738 6.054941 TGAGCTGTCTGAAATGACTTACAAA 58.945 36.000 0.00 0.00 37.79 2.83
709 739 6.542005 TGAGCTGTCTGAAATGACTTACAAAA 59.458 34.615 0.00 0.00 37.79 2.44
710 740 6.963796 AGCTGTCTGAAATGACTTACAAAAG 58.036 36.000 0.00 0.00 37.79 2.27
712 742 6.634436 GCTGTCTGAAATGACTTACAAAAGTG 59.366 38.462 0.00 0.00 46.09 3.16
713 743 7.467267 GCTGTCTGAAATGACTTACAAAAGTGA 60.467 37.037 0.00 0.00 46.09 3.41
714 744 8.275015 TGTCTGAAATGACTTACAAAAGTGAA 57.725 30.769 0.00 0.00 46.09 3.18
715 745 8.181573 TGTCTGAAATGACTTACAAAAGTGAAC 58.818 33.333 0.00 0.00 46.09 3.18
716 746 7.373441 GTCTGAAATGACTTACAAAAGTGAACG 59.627 37.037 0.00 0.00 46.09 3.95
717 747 6.491394 TGAAATGACTTACAAAAGTGAACGG 58.509 36.000 0.00 0.00 46.09 4.44
718 748 6.316640 TGAAATGACTTACAAAAGTGAACGGA 59.683 34.615 0.00 0.00 46.09 4.69
719 749 5.924475 ATGACTTACAAAAGTGAACGGAG 57.076 39.130 0.00 0.00 46.09 4.63
720 750 4.124238 TGACTTACAAAAGTGAACGGAGG 58.876 43.478 0.00 0.00 46.09 4.30
721 751 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
722 752 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
723 753 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
724 754 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
725 755 2.701951 ACAAAAGTGAACGGAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
726 756 3.135167 ACAAAAGTGAACGGAGGGAGTAA 59.865 43.478 0.00 0.00 0.00 2.24
727 757 4.202430 ACAAAAGTGAACGGAGGGAGTAAT 60.202 41.667 0.00 0.00 0.00 1.89
728 758 5.012354 ACAAAAGTGAACGGAGGGAGTAATA 59.988 40.000 0.00 0.00 0.00 0.98
729 759 5.340439 AAAGTGAACGGAGGGAGTAATAG 57.660 43.478 0.00 0.00 0.00 1.73
763 793 1.673665 CTTGGCTGCAGGAGTGTCC 60.674 63.158 17.12 7.37 36.58 4.02
769 799 1.972872 CTGCAGGAGTGTCCACTTTT 58.027 50.000 5.57 0.00 42.66 2.27
770 800 1.605710 CTGCAGGAGTGTCCACTTTTG 59.394 52.381 5.57 4.88 42.66 2.44
811 846 0.761187 TATGATGGCTGCAGGAGTCC 59.239 55.000 17.12 8.57 0.00 3.85
812 847 1.992519 ATGATGGCTGCAGGAGTCCC 61.993 60.000 17.12 8.16 0.00 4.46
828 863 0.399949 TCCCTTGACTGGTCCAGTGT 60.400 55.000 29.53 6.33 45.44 3.55
850 885 3.745975 TCTGGTTTCTTCATACAACAGCG 59.254 43.478 0.00 0.00 0.00 5.18
853 888 3.423123 GGTTTCTTCATACAACAGCGTCG 60.423 47.826 0.00 0.00 0.00 5.12
854 889 1.346365 TCTTCATACAACAGCGTCGC 58.654 50.000 9.80 9.80 0.00 5.19
868 912 5.286438 ACAGCGTCGCATTAGAATATAACA 58.714 37.500 21.09 0.00 0.00 2.41
897 941 7.552687 TGATTGATCTTCCACTGTTGGTATAAC 59.447 37.037 0.00 0.00 44.35 1.89
952 1000 3.059352 ACCATTGCTTAGGTGTCTGTC 57.941 47.619 0.00 0.00 36.60 3.51
953 1001 2.639839 ACCATTGCTTAGGTGTCTGTCT 59.360 45.455 0.00 0.00 36.60 3.41
999 1054 1.817941 ACAGACACACGGTGGCAAC 60.818 57.895 13.48 0.00 45.35 4.17
1053 1108 1.004044 CTCCTCATGTTCTGCCTGGTT 59.996 52.381 0.00 0.00 0.00 3.67
1308 1371 7.399245 AGTGTAACAAACTAACCATTGTGTT 57.601 32.000 0.00 0.00 41.43 3.32
1327 1390 2.947652 GTTGTATGATGATGCAGGCAGT 59.052 45.455 0.00 0.00 0.00 4.40
1402 1465 3.244215 GGGCTTCGATGGTGAATGAGATA 60.244 47.826 0.00 0.00 0.00 1.98
1423 1486 7.974504 AGATACAAAAGGGTTCTCTTTCTACA 58.025 34.615 0.00 0.00 36.09 2.74
1426 1489 3.679824 AAGGGTTCTCTTTCTACACGG 57.320 47.619 0.00 0.00 0.00 4.94
1613 1712 2.096013 GGGTAAGCTGTGAATTTCTCGC 59.904 50.000 0.00 3.27 34.93 5.03
1615 1714 0.166814 AAGCTGTGAATTTCTCGCGC 59.833 50.000 0.00 0.00 37.37 6.86
1673 1777 7.435192 TGTGATGCGTATATTGCTAGCATATAC 59.565 37.037 26.94 26.94 46.89 1.47
1867 2657 6.662414 TTGCAAATGTCTTCCTAGTTATCG 57.338 37.500 0.00 0.00 0.00 2.92
2006 2801 0.034767 TCATCTCTGGCTTGCAAGGG 60.035 55.000 27.10 2.16 0.00 3.95
2061 3115 3.911260 TGTTGGTGGAAGGTAATACTCCA 59.089 43.478 0.00 0.00 0.00 3.86
2062 3116 4.538490 TGTTGGTGGAAGGTAATACTCCAT 59.462 41.667 4.94 0.00 32.68 3.41
2071 3125 6.445451 AAGGTAATACTCCATCTGCATCAT 57.555 37.500 0.00 0.00 0.00 2.45
2078 3132 4.701765 ACTCCATCTGCATCATACAGTTC 58.298 43.478 0.00 0.00 36.50 3.01
2128 3192 8.590204 TGTCTTGTATACTCATGTGTAAAAGGA 58.410 33.333 11.38 4.31 36.41 3.36
2130 3194 9.431887 TCTTGTATACTCATGTGTAAAAGGAAC 57.568 33.333 11.38 4.95 36.41 3.62
2262 3345 4.428209 TCAACGCAAACAACACAATCATT 58.572 34.783 0.00 0.00 0.00 2.57
2458 3557 5.471116 TCATCACAAAGACAGAAGATTGGTG 59.529 40.000 0.00 0.00 0.00 4.17
2469 3572 6.681777 ACAGAAGATTGGTGTCTTTATTTGC 58.318 36.000 0.00 0.00 38.51 3.68
2660 3785 7.174253 GGTATGGTCTGTGAACTTTTTACATGA 59.826 37.037 0.00 0.00 0.00 3.07
2736 3902 8.470805 ACTCAACAGTGGAGTTAATATCTAGTG 58.529 37.037 4.54 9.09 42.77 2.74
2855 4027 4.079253 GTTGCCTTCCCTTTCTGAACATA 58.921 43.478 0.00 0.00 0.00 2.29
2858 4030 3.942115 GCCTTCCCTTTCTGAACATAGTC 59.058 47.826 0.00 0.00 0.00 2.59
2859 4031 4.323868 GCCTTCCCTTTCTGAACATAGTCT 60.324 45.833 0.00 0.00 0.00 3.24
2860 4032 5.181748 CCTTCCCTTTCTGAACATAGTCTG 58.818 45.833 0.00 0.00 0.00 3.51
2897 4631 1.909700 TGCAGGTGATGGTTCCTTTC 58.090 50.000 0.00 0.00 30.91 2.62
2993 4727 2.826128 TGCTGTCTACAGGATTCTTCGT 59.174 45.455 11.86 0.00 43.94 3.85
3159 4925 2.231478 TCCTCTTCTGCTTGTAGGAACG 59.769 50.000 0.00 0.00 33.45 3.95
3277 5043 2.842256 TAAGATCCTCGTCGCCGGC 61.842 63.158 19.07 19.07 33.95 6.13
3490 5307 2.345760 GGTCTACGCCGAGAACCCA 61.346 63.158 0.00 0.00 0.00 4.51
3763 5580 3.335534 GTCGCCGACGTGCTGTTT 61.336 61.111 0.00 0.00 41.18 2.83
3769 5586 1.227999 CCGACGTGCTGTTTGGTGAT 61.228 55.000 0.00 0.00 0.00 3.06
3894 5711 4.148825 GCTCACCACCGAGGCGAT 62.149 66.667 0.00 0.00 43.14 4.58
3940 5763 3.733224 GCTGTAAGACATGAGATGCTACG 59.267 47.826 0.00 0.00 34.07 3.51
3953 5776 2.134201 TGCTACGGATGCTTATGTCG 57.866 50.000 0.00 0.00 0.00 4.35
3955 5778 1.787155 GCTACGGATGCTTATGTCGTG 59.213 52.381 0.00 0.00 35.60 4.35
3956 5779 2.798499 GCTACGGATGCTTATGTCGTGT 60.798 50.000 0.00 0.00 35.60 4.49
3957 5780 1.640428 ACGGATGCTTATGTCGTGTG 58.360 50.000 0.00 0.00 32.60 3.82
3989 5812 2.541346 ACGAGATGCTAAATCATGCGTG 59.459 45.455 0.00 0.00 34.77 5.34
3991 5814 3.133691 GAGATGCTAAATCATGCGTGGA 58.866 45.455 5.98 0.00 0.00 4.02
3994 5817 0.947244 GCTAAATCATGCGTGGAGGG 59.053 55.000 5.98 0.00 0.00 4.30
3995 5818 1.747206 GCTAAATCATGCGTGGAGGGT 60.747 52.381 5.98 0.00 0.00 4.34
4006 5829 2.280628 CGTGGAGGGTTCTTAATCAGC 58.719 52.381 0.00 0.00 0.00 4.26
4012 5835 4.323868 GGAGGGTTCTTAATCAGCAGTTCT 60.324 45.833 0.00 0.00 0.00 3.01
4015 5838 5.003804 GGGTTCTTAATCAGCAGTTCTTCA 58.996 41.667 0.00 0.00 0.00 3.02
4016 5839 5.106515 GGGTTCTTAATCAGCAGTTCTTCAC 60.107 44.000 0.00 0.00 0.00 3.18
4017 5840 5.106515 GGTTCTTAATCAGCAGTTCTTCACC 60.107 44.000 0.00 0.00 0.00 4.02
4031 5854 2.742710 TTCACCGTGTTCCTCTCGCG 62.743 60.000 0.00 0.00 38.32 5.87
4074 5980 9.869757 TCAATCCTTGTACCATGATATTATACG 57.130 33.333 0.00 0.00 0.00 3.06
4075 5981 9.869757 CAATCCTTGTACCATGATATTATACGA 57.130 33.333 0.00 0.00 0.00 3.43
4140 6046 4.377370 TGGCGAAGACACATGTGG 57.623 55.556 28.64 12.25 34.89 4.17
4141 6047 1.751563 TGGCGAAGACACATGTGGA 59.248 52.632 28.64 0.54 34.89 4.02
4142 6048 0.324614 TGGCGAAGACACATGTGGAT 59.675 50.000 28.64 14.44 34.89 3.41
4143 6049 0.729116 GGCGAAGACACATGTGGATG 59.271 55.000 28.64 14.54 31.66 3.51
4144 6050 1.442769 GCGAAGACACATGTGGATGT 58.557 50.000 28.64 8.65 44.08 3.06
4150 6056 3.076999 ACATGTGGATGTGGCGGA 58.923 55.556 0.00 0.00 41.52 5.54
4151 6057 1.378378 ACATGTGGATGTGGCGGAA 59.622 52.632 0.00 0.00 41.52 4.30
4152 6058 0.251121 ACATGTGGATGTGGCGGAAA 60.251 50.000 0.00 0.00 41.52 3.13
4153 6059 0.171007 CATGTGGATGTGGCGGAAAC 59.829 55.000 0.00 0.00 0.00 2.78
4154 6060 0.251121 ATGTGGATGTGGCGGAAACA 60.251 50.000 0.00 0.00 0.00 2.83
4155 6061 1.169661 TGTGGATGTGGCGGAAACAC 61.170 55.000 0.00 0.00 39.26 3.32
4156 6062 1.963855 TGGATGTGGCGGAAACACG 60.964 57.895 0.00 0.00 41.64 4.49
4157 6063 1.669760 GGATGTGGCGGAAACACGA 60.670 57.895 0.00 0.00 41.64 4.35
4158 6064 1.231958 GGATGTGGCGGAAACACGAA 61.232 55.000 0.00 0.00 41.64 3.85
4159 6065 0.802494 GATGTGGCGGAAACACGAAT 59.198 50.000 0.00 0.00 41.64 3.34
4160 6066 0.802494 ATGTGGCGGAAACACGAATC 59.198 50.000 0.00 0.00 41.64 2.52
4172 6078 4.801147 AACACGAATCGGATGAATGATG 57.199 40.909 7.80 0.00 0.00 3.07
4186 6092 4.274978 TGAATGATGCATCACATGGAAGT 58.725 39.130 30.92 10.41 39.84 3.01
4203 6109 3.930848 GGAAGTGTGGTTTATCTACCGTG 59.069 47.826 0.00 0.00 41.28 4.94
4214 6120 3.802948 ATCTACCGTGAATCCACTGTC 57.197 47.619 0.00 0.00 40.45 3.51
4216 6122 0.528924 TACCGTGAATCCACTGTCCG 59.471 55.000 0.00 0.00 40.45 4.79
4219 6125 0.038618 CGTGAATCCACTGTCCGTGA 60.039 55.000 0.00 0.00 46.81 4.35
4229 6135 2.542178 CACTGTCCGTGATCGTTTTGAA 59.458 45.455 0.00 0.00 46.81 2.69
4231 6137 3.813166 ACTGTCCGTGATCGTTTTGAAAT 59.187 39.130 0.00 0.00 35.01 2.17
4266 6203 7.513190 TTTTTGGTTTCAACTTGTATCAACG 57.487 32.000 0.00 0.00 31.78 4.10
4274 6211 5.060506 TCAACTTGTATCAACGTGGTTCAT 58.939 37.500 0.00 0.00 0.00 2.57
4276 6213 6.038825 TCAACTTGTATCAACGTGGTTCATTT 59.961 34.615 0.00 0.00 0.00 2.32
4277 6214 5.757886 ACTTGTATCAACGTGGTTCATTTG 58.242 37.500 0.00 0.00 0.00 2.32
4286 6223 3.886505 ACGTGGTTCATTTGTGTACCAAT 59.113 39.130 8.23 0.00 41.95 3.16
4314 6251 2.417243 GGGATGGGCTTGTTTTGAATCG 60.417 50.000 0.00 0.00 0.00 3.34
4369 6306 7.826260 AACATTAAAATACATTTTGGAGCGG 57.174 32.000 9.64 0.00 40.00 5.52
4397 6334 6.493189 AACCCCAATGTAACACTTTGAAAT 57.507 33.333 6.52 0.00 35.88 2.17
4470 6495 6.988622 ATTAAAATAACCATGAACGACGGA 57.011 33.333 0.00 0.00 0.00 4.69
4555 6580 5.796350 ATTTAGACTCGCAACCATTACAC 57.204 39.130 0.00 0.00 0.00 2.90
4564 6589 3.932710 CGCAACCATTACACTACACTGAT 59.067 43.478 0.00 0.00 0.00 2.90
4572 6597 7.669722 ACCATTACACTACACTGATTTGGATTT 59.330 33.333 0.00 0.00 0.00 2.17
4574 6599 9.988350 CATTACACTACACTGATTTGGATTTAC 57.012 33.333 0.00 0.00 0.00 2.01
4577 6602 5.642063 CACTACACTGATTTGGATTTACGGT 59.358 40.000 0.00 0.00 0.00 4.83
4589 6614 6.746745 TGGATTTACGGTCCAAGAAATTAC 57.253 37.500 0.00 0.00 42.56 1.89
4619 6644 7.497925 AAAAAGTAACTCCTGCAACTAAGAG 57.502 36.000 0.00 0.00 0.00 2.85
4651 6676 5.789643 AATCTCTTAGAGACATCAGCTCC 57.210 43.478 14.73 0.00 41.76 4.70
4652 6677 4.242336 TCTCTTAGAGACATCAGCTCCA 57.758 45.455 8.00 0.00 33.35 3.86
4661 6686 9.588096 TTAGAGACATCAGCTCCATAGTAATAA 57.412 33.333 0.00 0.00 32.82 1.40
4716 6742 9.603921 ATGGTAAAGAAATTGCAATTAGATTGG 57.396 29.630 24.35 0.00 40.57 3.16
4722 6748 1.024271 TGCAATTAGATTGGAGCGGC 58.976 50.000 0.00 0.00 40.57 6.53
4729 6755 0.032678 AGATTGGAGCGGCGATACTG 59.967 55.000 12.98 0.00 0.00 2.74
4736 6762 3.299585 CGGCGATACTGCAACTCG 58.700 61.111 0.00 7.62 36.28 4.18
4747 6773 0.107897 TGCAACTCGTTCACCTGTGT 60.108 50.000 0.00 0.00 0.00 3.72
4748 6774 0.304705 GCAACTCGTTCACCTGTGTG 59.695 55.000 0.00 0.00 44.18 3.82
4768 6794 8.322906 TGTGTGAACTTGATTACTGATAAAGG 57.677 34.615 0.00 0.00 31.29 3.11
4837 6863 2.615618 CGACGAGCATACAAGCGC 59.384 61.111 0.00 0.00 40.15 5.92
4838 6864 1.874019 CGACGAGCATACAAGCGCT 60.874 57.895 2.64 2.64 42.42 5.92
4841 6867 1.519234 CGAGCATACAAGCGCTGGA 60.519 57.895 21.26 6.50 38.99 3.86
4866 6892 2.429250 GACTCCCTAGAAGTTCAGGCTC 59.571 54.545 5.50 2.21 0.00 4.70
4867 6893 1.407258 CTCCCTAGAAGTTCAGGCTCG 59.593 57.143 5.50 0.00 0.00 5.03
4868 6894 1.005569 TCCCTAGAAGTTCAGGCTCGA 59.994 52.381 5.50 1.27 0.00 4.04
4869 6895 1.825474 CCCTAGAAGTTCAGGCTCGAA 59.175 52.381 5.50 0.00 0.00 3.71
4870 6896 2.417515 CCCTAGAAGTTCAGGCTCGAAC 60.418 54.545 16.87 16.87 44.63 3.95
4871 6897 2.417515 CCTAGAAGTTCAGGCTCGAACC 60.418 54.545 19.37 0.00 45.27 3.62
4872 6898 1.048601 AGAAGTTCAGGCTCGAACCA 58.951 50.000 19.37 0.00 45.27 3.67
4873 6899 1.625818 AGAAGTTCAGGCTCGAACCAT 59.374 47.619 19.37 12.56 45.27 3.55
4874 6900 2.039084 AGAAGTTCAGGCTCGAACCATT 59.961 45.455 19.37 12.10 45.27 3.16
4875 6901 3.260884 AGAAGTTCAGGCTCGAACCATTA 59.739 43.478 19.37 0.00 45.27 1.90
4876 6902 3.695830 AGTTCAGGCTCGAACCATTAA 57.304 42.857 19.37 0.00 45.27 1.40
4877 6903 3.600388 AGTTCAGGCTCGAACCATTAAG 58.400 45.455 19.37 0.00 45.27 1.85
4878 6904 3.008049 AGTTCAGGCTCGAACCATTAAGT 59.992 43.478 19.37 0.00 45.27 2.24
4879 6905 4.222145 AGTTCAGGCTCGAACCATTAAGTA 59.778 41.667 19.37 0.00 45.27 2.24
4880 6906 5.104900 AGTTCAGGCTCGAACCATTAAGTAT 60.105 40.000 19.37 3.05 45.27 2.12
4881 6907 5.353394 TCAGGCTCGAACCATTAAGTATT 57.647 39.130 7.76 0.00 0.00 1.89
4882 6908 5.357257 TCAGGCTCGAACCATTAAGTATTC 58.643 41.667 7.76 0.00 0.00 1.75
4883 6909 5.105106 TCAGGCTCGAACCATTAAGTATTCA 60.105 40.000 7.76 0.00 0.00 2.57
4884 6910 5.760253 CAGGCTCGAACCATTAAGTATTCAT 59.240 40.000 7.76 0.00 0.00 2.57
4885 6911 5.992217 AGGCTCGAACCATTAAGTATTCATC 59.008 40.000 7.76 0.00 0.00 2.92
4886 6912 5.758296 GGCTCGAACCATTAAGTATTCATCA 59.242 40.000 0.00 0.00 0.00 3.07
4887 6913 6.428159 GGCTCGAACCATTAAGTATTCATCAT 59.572 38.462 0.00 0.00 0.00 2.45
4888 6914 7.602644 GGCTCGAACCATTAAGTATTCATCATA 59.397 37.037 0.00 0.00 0.00 2.15
4889 6915 8.988934 GCTCGAACCATTAAGTATTCATCATAA 58.011 33.333 0.00 0.00 0.00 1.90
4901 6927 9.613428 AAGTATTCATCATAAATGTCGAGGAAA 57.387 29.630 0.00 0.00 33.69 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.832368 CACTCCAGCTCCAGCGAGTG 62.832 65.000 17.07 17.07 45.65 3.51
28 29 3.818180 CATTTTCCATGGAGAGGAGAGG 58.182 50.000 15.53 0.00 36.33 3.69
29 30 3.117963 AGCATTTTCCATGGAGAGGAGAG 60.118 47.826 15.53 4.10 36.33 3.20
30 31 2.848694 AGCATTTTCCATGGAGAGGAGA 59.151 45.455 15.53 0.00 36.33 3.71
31 32 3.117963 AGAGCATTTTCCATGGAGAGGAG 60.118 47.826 15.53 6.72 36.33 3.69
32 33 2.848694 AGAGCATTTTCCATGGAGAGGA 59.151 45.455 15.53 0.00 0.00 3.71
33 34 3.212685 GAGAGCATTTTCCATGGAGAGG 58.787 50.000 15.53 10.72 0.00 3.69
58 59 3.463704 AGTGGTTTCTTCTTTCTTCCCCT 59.536 43.478 0.00 0.00 0.00 4.79
84 89 4.729856 CGCTGCAAAGGGCCAAGC 62.730 66.667 6.18 7.16 43.89 4.01
105 110 4.292306 AGGGCAATGGTATTTATCCCCTAG 59.708 45.833 0.00 0.00 39.73 3.02
111 116 3.081804 CGGGAGGGCAATGGTATTTATC 58.918 50.000 0.00 0.00 0.00 1.75
136 141 0.739112 GGCGAGGAAGTGAGAGCTTG 60.739 60.000 0.00 0.00 0.00 4.01
144 149 1.133407 GTAGTGAGAGGCGAGGAAGTG 59.867 57.143 0.00 0.00 0.00 3.16
148 153 0.394488 CTGGTAGTGAGAGGCGAGGA 60.394 60.000 0.00 0.00 0.00 3.71
160 165 2.572104 CAAAGTAGCTTCCCCTGGTAGT 59.428 50.000 0.00 0.00 0.00 2.73
165 170 1.815003 CTTGCAAAGTAGCTTCCCCTG 59.185 52.381 0.00 0.00 39.70 4.45
166 171 1.272147 CCTTGCAAAGTAGCTTCCCCT 60.272 52.381 0.00 0.00 44.25 4.79
176 203 4.559862 AGAGCAGTATACCTTGCAAAGT 57.440 40.909 16.74 5.90 44.25 2.66
177 204 4.937620 TGAAGAGCAGTATACCTTGCAAAG 59.062 41.667 16.74 0.00 45.69 2.77
208 235 1.687628 GCGGCAGCTAAGATAGTACG 58.312 55.000 0.00 0.00 41.01 3.67
230 257 8.758715 GTTTCTGAAAATCTGGAAATTCAACAG 58.241 33.333 4.09 0.00 31.94 3.16
248 275 4.288626 ACAATAGGGGCTACAGTTTCTGAA 59.711 41.667 3.70 0.00 35.18 3.02
261 288 1.839424 AAACAGAGCACAATAGGGGC 58.161 50.000 0.00 0.00 0.00 5.80
269 296 1.894881 TGCAGCATAAACAGAGCACA 58.105 45.000 0.00 0.00 0.00 4.57
291 318 3.020984 TGGGTGGAAAACAGAAACAGAC 58.979 45.455 0.00 0.00 0.00 3.51
324 351 1.429148 GATTCGCCGAAATCAGCCGT 61.429 55.000 2.60 0.00 36.00 5.68
373 400 7.118496 TGGAAACCGGCATGATTTATATTTT 57.882 32.000 0.00 0.00 0.00 1.82
374 401 6.723298 TGGAAACCGGCATGATTTATATTT 57.277 33.333 0.00 0.00 0.00 1.40
375 402 6.331369 CTGGAAACCGGCATGATTTATATT 57.669 37.500 0.00 0.00 0.00 1.28
376 403 5.964958 CTGGAAACCGGCATGATTTATAT 57.035 39.130 0.00 0.00 0.00 0.86
389 416 3.057596 ACACATAATGTTGCTGGAAACCG 60.058 43.478 0.00 0.00 38.98 4.44
417 447 3.081061 GTTTTCCCCCAATTTTCATGGC 58.919 45.455 0.00 0.00 36.58 4.40
419 449 5.937540 GGTAAGTTTTCCCCCAATTTTCATG 59.062 40.000 0.00 0.00 0.00 3.07
423 453 4.349636 CCAGGTAAGTTTTCCCCCAATTTT 59.650 41.667 0.00 0.00 0.00 1.82
436 466 6.008331 GGAAACCACTAAATCCAGGTAAGTT 58.992 40.000 0.00 0.00 33.15 2.66
437 467 5.312443 AGGAAACCACTAAATCCAGGTAAGT 59.688 40.000 0.00 0.00 34.30 2.24
450 480 5.374071 GTTTGGAGAAGAAGGAAACCACTA 58.626 41.667 0.00 0.00 0.00 2.74
453 483 3.562182 GGTTTGGAGAAGAAGGAAACCA 58.438 45.455 0.00 0.00 43.36 3.67
496 526 1.507141 GGTTGTTCTCCAGTGCACGG 61.507 60.000 18.07 18.07 0.00 4.94
504 534 4.009675 GCATATCTGTTGGTTGTTCTCCA 58.990 43.478 0.00 0.00 0.00 3.86
517 547 1.491754 TCTGGCCATGTGCATATCTGT 59.508 47.619 5.51 0.00 43.89 3.41
534 564 2.749584 TAGCTGGGCAGGCCATCTG 61.750 63.158 25.81 12.39 46.03 2.90
535 565 2.367377 TAGCTGGGCAGGCCATCT 60.367 61.111 22.01 22.01 37.98 2.90
536 566 1.410850 TAGTAGCTGGGCAGGCCATC 61.411 60.000 17.76 13.05 37.98 3.51
537 567 0.769776 ATAGTAGCTGGGCAGGCCAT 60.770 55.000 17.76 5.10 37.98 4.40
538 568 1.384502 ATAGTAGCTGGGCAGGCCA 60.385 57.895 16.38 16.38 37.98 5.36
539 569 1.373059 GATAGTAGCTGGGCAGGCC 59.627 63.158 5.91 5.91 0.00 5.19
572 602 1.893137 GAATGGGTTTGGACAAGGACC 59.107 52.381 0.00 0.00 0.00 4.46
589 619 4.666512 ACCAGGTAATGTTGCTCAAGAAT 58.333 39.130 0.00 0.00 0.00 2.40
597 627 7.210718 AGTACTTAAAACCAGGTAATGTTGC 57.789 36.000 0.00 0.00 0.00 4.17
620 650 6.819146 GGTCTTATAAAAGTGAACAGAGGGAG 59.181 42.308 0.00 0.00 34.13 4.30
622 652 6.712276 AGGTCTTATAAAAGTGAACAGAGGG 58.288 40.000 0.00 0.00 34.13 4.30
623 653 7.878127 TGAAGGTCTTATAAAAGTGAACAGAGG 59.122 37.037 0.00 0.00 34.13 3.69
624 654 8.833231 TGAAGGTCTTATAAAAGTGAACAGAG 57.167 34.615 0.00 0.00 34.13 3.35
625 655 9.273016 CTTGAAGGTCTTATAAAAGTGAACAGA 57.727 33.333 0.00 0.00 34.13 3.41
626 656 9.273016 TCTTGAAGGTCTTATAAAAGTGAACAG 57.727 33.333 0.00 0.00 34.13 3.16
627 657 9.793259 ATCTTGAAGGTCTTATAAAAGTGAACA 57.207 29.630 0.00 0.00 34.13 3.18
640 670 8.954350 CATTGTCTGAAATATCTTGAAGGTCTT 58.046 33.333 0.00 0.00 0.00 3.01
641 671 8.105829 ACATTGTCTGAAATATCTTGAAGGTCT 58.894 33.333 0.00 0.00 0.00 3.85
642 672 8.273780 ACATTGTCTGAAATATCTTGAAGGTC 57.726 34.615 0.00 0.00 0.00 3.85
643 673 9.167311 GTACATTGTCTGAAATATCTTGAAGGT 57.833 33.333 0.00 0.00 0.00 3.50
644 674 9.166173 TGTACATTGTCTGAAATATCTTGAAGG 57.834 33.333 0.00 0.00 0.00 3.46
651 681 9.065871 GCTGTTTTGTACATTGTCTGAAATATC 57.934 33.333 0.00 0.00 35.85 1.63
652 682 8.028938 GGCTGTTTTGTACATTGTCTGAAATAT 58.971 33.333 0.00 0.00 35.85 1.28
653 683 7.367285 GGCTGTTTTGTACATTGTCTGAAATA 58.633 34.615 0.00 0.00 35.85 1.40
654 684 6.215845 GGCTGTTTTGTACATTGTCTGAAAT 58.784 36.000 0.00 0.00 35.85 2.17
655 685 5.451242 GGGCTGTTTTGTACATTGTCTGAAA 60.451 40.000 0.00 0.00 35.85 2.69
656 686 4.037446 GGGCTGTTTTGTACATTGTCTGAA 59.963 41.667 0.00 0.00 35.85 3.02
657 687 3.568007 GGGCTGTTTTGTACATTGTCTGA 59.432 43.478 0.00 0.00 35.85 3.27
658 688 3.317711 TGGGCTGTTTTGTACATTGTCTG 59.682 43.478 0.00 0.00 35.85 3.51
659 689 3.561143 TGGGCTGTTTTGTACATTGTCT 58.439 40.909 0.00 0.00 35.85 3.41
660 690 4.519540 ATGGGCTGTTTTGTACATTGTC 57.480 40.909 0.00 0.00 35.85 3.18
661 691 4.953940 AATGGGCTGTTTTGTACATTGT 57.046 36.364 0.00 0.00 35.85 2.71
662 692 5.757320 TCAAAATGGGCTGTTTTGTACATTG 59.243 36.000 19.52 0.00 43.52 2.82
663 693 5.923204 TCAAAATGGGCTGTTTTGTACATT 58.077 33.333 19.52 0.00 43.52 2.71
664 694 5.540911 CTCAAAATGGGCTGTTTTGTACAT 58.459 37.500 19.52 0.00 43.52 2.29
665 695 4.739137 GCTCAAAATGGGCTGTTTTGTACA 60.739 41.667 19.52 0.00 41.63 2.90
666 696 3.740832 GCTCAAAATGGGCTGTTTTGTAC 59.259 43.478 19.52 12.95 41.63 2.90
667 697 3.988819 GCTCAAAATGGGCTGTTTTGTA 58.011 40.909 19.52 10.81 41.63 2.41
668 698 2.837498 GCTCAAAATGGGCTGTTTTGT 58.163 42.857 19.52 0.00 41.63 2.83
676 706 1.538047 TCAGACAGCTCAAAATGGGC 58.462 50.000 0.00 0.00 46.33 5.36
677 707 4.219070 TCATTTCAGACAGCTCAAAATGGG 59.781 41.667 12.29 0.00 36.21 4.00
678 708 5.048224 AGTCATTTCAGACAGCTCAAAATGG 60.048 40.000 12.29 0.00 40.98 3.16
679 709 6.010294 AGTCATTTCAGACAGCTCAAAATG 57.990 37.500 0.00 0.00 40.98 2.32
680 710 6.645790 AAGTCATTTCAGACAGCTCAAAAT 57.354 33.333 0.00 0.00 40.98 1.82
681 711 6.542005 TGTAAGTCATTTCAGACAGCTCAAAA 59.458 34.615 0.00 0.00 40.98 2.44
682 712 6.054941 TGTAAGTCATTTCAGACAGCTCAAA 58.945 36.000 0.00 0.00 40.98 2.69
683 713 5.610398 TGTAAGTCATTTCAGACAGCTCAA 58.390 37.500 0.00 0.00 40.98 3.02
684 714 5.213891 TGTAAGTCATTTCAGACAGCTCA 57.786 39.130 0.00 0.00 40.98 4.26
685 715 6.545504 TTTGTAAGTCATTTCAGACAGCTC 57.454 37.500 0.00 0.00 40.98 4.09
686 716 6.543831 ACTTTTGTAAGTCATTTCAGACAGCT 59.456 34.615 0.00 0.00 40.60 4.24
687 717 6.634436 CACTTTTGTAAGTCATTTCAGACAGC 59.366 38.462 0.00 0.00 42.67 4.40
688 718 7.919690 TCACTTTTGTAAGTCATTTCAGACAG 58.080 34.615 0.00 0.00 42.67 3.51
689 719 7.857734 TCACTTTTGTAAGTCATTTCAGACA 57.142 32.000 0.00 0.00 42.67 3.41
690 720 7.373441 CGTTCACTTTTGTAAGTCATTTCAGAC 59.627 37.037 0.00 0.00 42.67 3.51
691 721 7.406553 CGTTCACTTTTGTAAGTCATTTCAGA 58.593 34.615 0.00 0.00 42.67 3.27
692 722 6.632834 CCGTTCACTTTTGTAAGTCATTTCAG 59.367 38.462 0.00 0.00 42.67 3.02
693 723 6.316640 TCCGTTCACTTTTGTAAGTCATTTCA 59.683 34.615 0.00 0.00 42.67 2.69
694 724 6.721321 TCCGTTCACTTTTGTAAGTCATTTC 58.279 36.000 0.00 0.00 42.67 2.17
695 725 6.238648 CCTCCGTTCACTTTTGTAAGTCATTT 60.239 38.462 0.00 0.00 42.67 2.32
696 726 5.238650 CCTCCGTTCACTTTTGTAAGTCATT 59.761 40.000 0.00 0.00 42.67 2.57
697 727 4.755123 CCTCCGTTCACTTTTGTAAGTCAT 59.245 41.667 0.00 0.00 42.67 3.06
698 728 4.124238 CCTCCGTTCACTTTTGTAAGTCA 58.876 43.478 0.00 0.00 42.67 3.41
699 729 3.497262 CCCTCCGTTCACTTTTGTAAGTC 59.503 47.826 0.00 0.00 42.67 3.01
700 730 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
701 731 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
702 732 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
703 733 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
704 734 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
705 735 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
706 736 4.635699 ATTACTCCCTCCGTTCACTTTT 57.364 40.909 0.00 0.00 0.00 2.27
707 737 5.021458 TCTATTACTCCCTCCGTTCACTTT 58.979 41.667 0.00 0.00 0.00 2.66
708 738 4.607239 TCTATTACTCCCTCCGTTCACTT 58.393 43.478 0.00 0.00 0.00 3.16
709 739 4.246712 TCTATTACTCCCTCCGTTCACT 57.753 45.455 0.00 0.00 0.00 3.41
710 740 6.622549 CATATCTATTACTCCCTCCGTTCAC 58.377 44.000 0.00 0.00 0.00 3.18
711 741 5.185249 GCATATCTATTACTCCCTCCGTTCA 59.815 44.000 0.00 0.00 0.00 3.18
712 742 5.185249 TGCATATCTATTACTCCCTCCGTTC 59.815 44.000 0.00 0.00 0.00 3.95
713 743 5.047235 GTGCATATCTATTACTCCCTCCGTT 60.047 44.000 0.00 0.00 0.00 4.44
714 744 4.463186 GTGCATATCTATTACTCCCTCCGT 59.537 45.833 0.00 0.00 0.00 4.69
715 745 4.142138 GGTGCATATCTATTACTCCCTCCG 60.142 50.000 0.00 0.00 0.00 4.63
716 746 4.162509 GGGTGCATATCTATTACTCCCTCC 59.837 50.000 0.00 0.00 0.00 4.30
717 747 5.026790 AGGGTGCATATCTATTACTCCCTC 58.973 45.833 0.00 0.00 38.37 4.30
718 748 5.029973 AGGGTGCATATCTATTACTCCCT 57.970 43.478 0.00 0.00 38.00 4.20
719 749 5.013183 ACAAGGGTGCATATCTATTACTCCC 59.987 44.000 0.00 0.00 0.00 4.30
720 750 6.115448 ACAAGGGTGCATATCTATTACTCC 57.885 41.667 0.00 0.00 0.00 3.85
721 751 7.897864 AGTACAAGGGTGCATATCTATTACTC 58.102 38.462 0.00 0.00 31.27 2.59
722 752 7.857404 AGTACAAGGGTGCATATCTATTACT 57.143 36.000 0.00 0.00 31.27 2.24
723 753 7.387948 CCAAGTACAAGGGTGCATATCTATTAC 59.612 40.741 0.00 0.00 31.27 1.89
724 754 7.450074 CCAAGTACAAGGGTGCATATCTATTA 58.550 38.462 0.00 0.00 31.27 0.98
725 755 6.299141 CCAAGTACAAGGGTGCATATCTATT 58.701 40.000 0.00 0.00 31.27 1.73
726 756 5.746065 GCCAAGTACAAGGGTGCATATCTAT 60.746 44.000 0.00 0.00 31.27 1.98
727 757 4.444306 GCCAAGTACAAGGGTGCATATCTA 60.444 45.833 0.00 0.00 31.27 1.98
728 758 3.685550 GCCAAGTACAAGGGTGCATATCT 60.686 47.826 0.00 0.00 31.27 1.98
729 759 2.618709 GCCAAGTACAAGGGTGCATATC 59.381 50.000 0.00 0.00 31.27 1.63
763 793 4.874970 AGGAGCATAAACAAGCAAAAGTG 58.125 39.130 0.00 0.00 0.00 3.16
769 799 9.387257 CATATCATATAGGAGCATAAACAAGCA 57.613 33.333 0.00 0.00 0.00 3.91
770 800 9.605275 TCATATCATATAGGAGCATAAACAAGC 57.395 33.333 0.00 0.00 0.00 4.01
811 846 1.051812 AGACACTGGACCAGTCAAGG 58.948 55.000 24.76 15.44 43.43 3.61
812 847 2.160822 CAGACACTGGACCAGTCAAG 57.839 55.000 24.76 15.81 43.43 3.02
825 860 5.560953 GCTGTTGTATGAAGAAACCAGACAC 60.561 44.000 0.00 0.00 35.76 3.67
828 863 3.745975 CGCTGTTGTATGAAGAAACCAGA 59.254 43.478 0.00 0.00 0.00 3.86
850 885 9.533983 CAATCATGTGTTATATTCTAATGCGAC 57.466 33.333 0.00 0.00 0.00 5.19
868 912 5.892160 CAACAGTGGAAGATCAATCATGT 57.108 39.130 0.00 0.00 0.00 3.21
897 941 2.668457 GTGAAGTAGCGAACACTCATGG 59.332 50.000 0.00 0.00 0.00 3.66
909 953 3.365364 GCCAACAATGTGAGTGAAGTAGC 60.365 47.826 0.00 0.00 0.00 3.58
950 998 6.597832 ATCACCACAGGCTTCTATATAGAC 57.402 41.667 12.12 2.11 30.81 2.59
951 999 5.416013 CGATCACCACAGGCTTCTATATAGA 59.584 44.000 8.44 8.44 0.00 1.98
952 1000 5.416013 TCGATCACCACAGGCTTCTATATAG 59.584 44.000 3.10 3.10 0.00 1.31
953 1001 5.321927 TCGATCACCACAGGCTTCTATATA 58.678 41.667 0.00 0.00 0.00 0.86
995 1050 2.877691 GCGAACTCCCCATGTTGC 59.122 61.111 0.00 0.00 0.00 4.17
999 1054 2.745884 TTGCGCGAACTCCCCATG 60.746 61.111 12.10 0.00 0.00 3.66
1053 1108 2.917227 TCCGCTCTCACCAGCACA 60.917 61.111 0.00 0.00 39.62 4.57
1295 1358 6.914215 GCATCATCATACAACACAATGGTTAG 59.086 38.462 0.00 0.00 0.00 2.34
1297 1360 5.185442 TGCATCATCATACAACACAATGGTT 59.815 36.000 0.00 0.00 0.00 3.67
1298 1361 4.705991 TGCATCATCATACAACACAATGGT 59.294 37.500 0.00 0.00 0.00 3.55
1299 1362 5.251601 TGCATCATCATACAACACAATGG 57.748 39.130 0.00 0.00 0.00 3.16
1308 1371 2.092807 ACACTGCCTGCATCATCATACA 60.093 45.455 0.00 0.00 0.00 2.29
1327 1390 3.150949 CCTCCACCACTCAGCACA 58.849 61.111 0.00 0.00 0.00 4.57
1402 1465 4.814771 CGTGTAGAAAGAGAACCCTTTTGT 59.185 41.667 0.00 0.00 36.58 2.83
1423 1486 0.828022 TCATCGGAATACCAAGCCGT 59.172 50.000 0.00 0.00 45.02 5.68
1426 1489 3.921021 CGTAGATCATCGGAATACCAAGC 59.079 47.826 0.00 0.00 35.59 4.01
1594 1687 2.784665 GCGCGAGAAATTCACAGCTTAC 60.785 50.000 12.10 0.00 0.00 2.34
1613 1712 2.266554 TCAAAGTTGGTGCTTTTTGCG 58.733 42.857 0.00 0.00 46.63 4.85
1646 1745 4.568956 TGCTAGCAATATACGCATCACAT 58.431 39.130 16.84 0.00 0.00 3.21
1695 2159 1.140312 GCATAGGGTCCCTGGAATGA 58.860 55.000 21.83 0.00 34.61 2.57
1697 2161 1.143813 CAGCATAGGGTCCCTGGAAT 58.856 55.000 21.83 2.90 34.61 3.01
2061 3115 8.140628 CAGTTACTAGAACTGTATGATGCAGAT 58.859 37.037 17.41 5.18 41.90 2.90
2062 3116 7.339466 TCAGTTACTAGAACTGTATGATGCAGA 59.661 37.037 17.41 0.00 45.75 4.26
2202 3285 2.205074 CCATCACCGACATAGTGCTTC 58.795 52.381 0.00 0.00 35.14 3.86
2262 3345 2.871637 GCTCATTAGCCCATGCGTATCA 60.872 50.000 0.00 0.00 43.40 2.15
2660 3785 7.254522 GCGAATGATGCATTCCACAATTTTTAT 60.255 33.333 0.00 0.00 45.03 1.40
2675 3800 3.444742 AGAAAAATGGAGCGAATGATGCA 59.555 39.130 0.00 0.00 35.88 3.96
2736 3902 3.494048 CCCTCTATTGTGACTGATGAGGC 60.494 52.174 0.00 0.00 38.50 4.70
2855 4027 6.591834 GCATATAGTGTGTTTCAGTTCAGACT 59.408 38.462 0.00 0.00 40.38 3.24
2858 4030 6.183360 CCTGCATATAGTGTGTTTCAGTTCAG 60.183 42.308 0.00 0.00 0.00 3.02
2859 4031 5.643348 CCTGCATATAGTGTGTTTCAGTTCA 59.357 40.000 0.00 0.00 0.00 3.18
2860 4032 5.643777 ACCTGCATATAGTGTGTTTCAGTTC 59.356 40.000 0.00 0.00 0.00 3.01
2897 4631 4.571984 TCATCAATGAATTCTGTGTAGGCG 59.428 41.667 7.05 0.00 33.08 5.52
2993 4727 1.774254 AGACCCATGGTGAACTTGACA 59.226 47.619 11.73 0.00 35.25 3.58
3026 4760 2.125106 AGGCTTGGATCGGCGAAC 60.125 61.111 15.93 12.05 0.00 3.95
3137 4903 3.591023 GTTCCTACAAGCAGAAGAGGAC 58.409 50.000 0.00 0.00 36.04 3.85
3277 5043 4.988598 AGGTTGTCGGCGTGGCTG 62.989 66.667 6.85 0.00 36.06 4.85
3671 5488 1.485294 ATGTACGGCTCCACCACCAA 61.485 55.000 0.00 0.00 39.03 3.67
3894 5711 0.249120 ATCGCACCGGACTCATTTCA 59.751 50.000 9.46 0.00 0.00 2.69
3940 5763 0.657840 GCCACACGACATAAGCATCC 59.342 55.000 0.00 0.00 0.00 3.51
3953 5776 3.889196 TCTCGTTATTTTGTGCCACAC 57.111 42.857 0.00 0.00 34.56 3.82
3955 5778 3.119849 AGCATCTCGTTATTTTGTGCCAC 60.120 43.478 0.00 0.00 0.00 5.01
3956 5779 3.081061 AGCATCTCGTTATTTTGTGCCA 58.919 40.909 0.00 0.00 0.00 4.92
3957 5780 3.764885 AGCATCTCGTTATTTTGTGCC 57.235 42.857 0.00 0.00 0.00 5.01
3989 5812 3.636153 ACTGCTGATTAAGAACCCTCC 57.364 47.619 0.00 0.00 0.00 4.30
3991 5814 4.917906 AGAACTGCTGATTAAGAACCCT 57.082 40.909 0.00 0.00 0.00 4.34
3994 5817 5.389935 CGGTGAAGAACTGCTGATTAAGAAC 60.390 44.000 0.00 0.00 0.00 3.01
3995 5818 4.690748 CGGTGAAGAACTGCTGATTAAGAA 59.309 41.667 0.00 0.00 0.00 2.52
4006 5829 2.135933 GAGGAACACGGTGAAGAACTG 58.864 52.381 16.29 0.00 41.37 3.16
4012 5835 1.006571 GCGAGAGGAACACGGTGAA 60.007 57.895 16.29 0.00 33.53 3.18
4015 5838 4.052229 CCGCGAGAGGAACACGGT 62.052 66.667 8.23 0.00 39.05 4.83
4031 5854 8.414629 AAGGATTGAGATTATTATTGAAGGCC 57.585 34.615 0.00 0.00 0.00 5.19
4073 5979 9.804758 GAGGGGTCATTAGTATCTTTATATTCG 57.195 37.037 0.00 0.00 0.00 3.34
4074 5980 9.804758 CGAGGGGTCATTAGTATCTTTATATTC 57.195 37.037 0.00 0.00 0.00 1.75
4075 5981 9.543231 TCGAGGGGTCATTAGTATCTTTATATT 57.457 33.333 0.00 0.00 0.00 1.28
4076 5982 9.543231 TTCGAGGGGTCATTAGTATCTTTATAT 57.457 33.333 0.00 0.00 0.00 0.86
4077 5983 8.945195 TTCGAGGGGTCATTAGTATCTTTATA 57.055 34.615 0.00 0.00 0.00 0.98
4087 5993 2.103094 TGCTGATTCGAGGGGTCATTAG 59.897 50.000 0.00 0.00 0.00 1.73
4135 6041 0.251121 TGTTTCCGCCACATCCACAT 60.251 50.000 0.00 0.00 0.00 3.21
4136 6042 1.149401 TGTTTCCGCCACATCCACA 59.851 52.632 0.00 0.00 0.00 4.17
4139 6045 1.231958 TTCGTGTTTCCGCCACATCC 61.232 55.000 0.00 0.00 33.00 3.51
4140 6046 0.802494 ATTCGTGTTTCCGCCACATC 59.198 50.000 0.00 0.00 33.00 3.06
4141 6047 0.802494 GATTCGTGTTTCCGCCACAT 59.198 50.000 0.00 0.00 33.00 3.21
4142 6048 1.561717 CGATTCGTGTTTCCGCCACA 61.562 55.000 0.00 0.00 33.00 4.17
4143 6049 1.131826 CGATTCGTGTTTCCGCCAC 59.868 57.895 0.00 0.00 0.00 5.01
4144 6050 2.030401 CCGATTCGTGTTTCCGCCA 61.030 57.895 5.20 0.00 0.00 5.69
4145 6051 1.087771 ATCCGATTCGTGTTTCCGCC 61.088 55.000 5.20 0.00 0.00 6.13
4146 6052 0.026285 CATCCGATTCGTGTTTCCGC 59.974 55.000 5.20 0.00 0.00 5.54
4147 6053 1.635844 TCATCCGATTCGTGTTTCCG 58.364 50.000 5.20 0.00 0.00 4.30
4148 6054 3.621268 TCATTCATCCGATTCGTGTTTCC 59.379 43.478 5.20 0.00 0.00 3.13
4150 6056 4.496341 GCATCATTCATCCGATTCGTGTTT 60.496 41.667 5.20 0.00 0.00 2.83
4151 6057 3.002656 GCATCATTCATCCGATTCGTGTT 59.997 43.478 5.20 0.00 0.00 3.32
4152 6058 2.545526 GCATCATTCATCCGATTCGTGT 59.454 45.455 5.20 0.00 0.00 4.49
4153 6059 2.545106 TGCATCATTCATCCGATTCGTG 59.455 45.455 5.20 0.00 0.00 4.35
4154 6060 2.837498 TGCATCATTCATCCGATTCGT 58.163 42.857 5.20 0.00 0.00 3.85
4155 6061 3.434299 TGATGCATCATTCATCCGATTCG 59.566 43.478 25.42 0.00 39.54 3.34
4156 6062 4.214758 TGTGATGCATCATTCATCCGATTC 59.785 41.667 30.89 14.41 39.54 2.52
4157 6063 4.139038 TGTGATGCATCATTCATCCGATT 58.861 39.130 30.89 0.00 39.54 3.34
4158 6064 3.746940 TGTGATGCATCATTCATCCGAT 58.253 40.909 30.89 0.00 39.54 4.18
4159 6065 3.196939 TGTGATGCATCATTCATCCGA 57.803 42.857 30.89 2.94 39.54 4.55
4160 6066 3.365969 CCATGTGATGCATCATTCATCCG 60.366 47.826 30.89 17.92 39.54 4.18
4186 6092 4.223255 TGGATTCACGGTAGATAAACCACA 59.777 41.667 0.00 0.00 39.71 4.17
4214 6120 4.030529 GCATGAATTTCAAAACGATCACGG 59.969 41.667 2.68 0.00 44.46 4.94
4216 6122 7.023575 AGTAGCATGAATTTCAAAACGATCAC 58.976 34.615 2.68 0.00 0.00 3.06
4219 6125 8.816640 AAAAGTAGCATGAATTTCAAAACGAT 57.183 26.923 2.68 0.00 0.00 3.73
4252 6189 4.804608 TGAACCACGTTGATACAAGTTG 57.195 40.909 0.00 0.00 0.00 3.16
4264 6201 2.920524 TGGTACACAAATGAACCACGT 58.079 42.857 0.00 0.00 37.09 4.49
4266 6203 8.649973 TTTTTATTGGTACACAAATGAACCAC 57.350 30.769 0.00 0.00 43.46 4.16
4297 6234 0.965439 CCCGATTCAAAACAAGCCCA 59.035 50.000 0.00 0.00 0.00 5.36
4299 6236 2.799978 CAAACCCGATTCAAAACAAGCC 59.200 45.455 0.00 0.00 0.00 4.35
4300 6237 2.220824 GCAAACCCGATTCAAAACAAGC 59.779 45.455 0.00 0.00 0.00 4.01
4314 6251 6.697019 GTGTATCATCATGTATTTGCAAACCC 59.303 38.462 15.41 8.47 0.00 4.11
4347 6284 7.479980 TCTCCGCTCCAAAATGTATTTTAATG 58.520 34.615 2.54 0.00 37.86 1.90
4348 6285 7.639113 TCTCCGCTCCAAAATGTATTTTAAT 57.361 32.000 2.54 0.00 37.86 1.40
4349 6286 7.455641 TTCTCCGCTCCAAAATGTATTTTAA 57.544 32.000 2.54 0.00 37.86 1.52
4363 6300 0.323451 ATTGGGGTTTTCTCCGCTCC 60.323 55.000 0.00 0.00 45.20 4.70
4369 6306 5.784578 AAGTGTTACATTGGGGTTTTCTC 57.215 39.130 0.00 0.00 0.00 2.87
4450 6387 4.438200 GCATCCGTCGTTCATGGTTATTTT 60.438 41.667 0.00 0.00 32.08 1.82
4454 6391 1.066787 TGCATCCGTCGTTCATGGTTA 60.067 47.619 0.00 0.00 32.08 2.85
4456 6393 0.107703 ATGCATCCGTCGTTCATGGT 60.108 50.000 0.00 0.00 32.08 3.55
4459 6396 1.202521 TGCTATGCATCCGTCGTTCAT 60.203 47.619 0.19 0.00 31.71 2.57
4460 6397 0.174617 TGCTATGCATCCGTCGTTCA 59.825 50.000 0.19 0.00 31.71 3.18
4461 6398 2.971997 TGCTATGCATCCGTCGTTC 58.028 52.632 0.19 0.00 31.71 3.95
4522 6547 8.662141 GGTTGCGAGTCTAAATAAAATTACAGA 58.338 33.333 0.00 0.00 0.00 3.41
4525 6550 9.783256 AATGGTTGCGAGTCTAAATAAAATTAC 57.217 29.630 0.00 0.00 0.00 1.89
4543 6568 5.880054 AATCAGTGTAGTGTAATGGTTGC 57.120 39.130 0.00 0.00 0.00 4.17
4555 6580 5.293569 GGACCGTAAATCCAAATCAGTGTAG 59.706 44.000 0.00 0.00 36.15 2.74
4589 6614 8.871686 AGTTGCAGGAGTTACTTTTTATTTTG 57.128 30.769 0.00 0.00 0.00 2.44
4692 6718 9.305925 CTCCAATCTAATTGCAATTTCTTTACC 57.694 33.333 28.45 0.00 38.92 2.85
4700 6726 3.491447 GCCGCTCCAATCTAATTGCAATT 60.491 43.478 26.72 26.72 38.92 2.32
4711 6737 1.560860 GCAGTATCGCCGCTCCAATC 61.561 60.000 0.00 0.00 0.00 2.67
4716 6742 1.483424 GAGTTGCAGTATCGCCGCTC 61.483 60.000 0.00 0.00 0.00 5.03
4722 6748 1.654105 GGTGAACGAGTTGCAGTATCG 59.346 52.381 13.62 13.62 42.04 2.92
4729 6755 2.690326 ACACAGGTGAACGAGTTGC 58.310 52.632 6.40 0.00 0.00 4.17
4760 6786 4.904853 AGGGGCTTTCAAAAACCTTTATCA 59.095 37.500 0.00 0.00 0.00 2.15
4768 6794 3.819564 ACTCAAGGGGCTTTCAAAAAC 57.180 42.857 0.00 0.00 0.00 2.43
4820 6846 1.874019 AGCGCTTGTATGCTCGTCG 60.874 57.895 2.64 0.00 36.53 5.12
4822 6848 1.811266 CCAGCGCTTGTATGCTCGT 60.811 57.895 7.50 0.00 40.03 4.18
4828 6854 1.759445 AGTCATCTCCAGCGCTTGTAT 59.241 47.619 7.50 0.00 0.00 2.29
4841 6867 4.285863 CCTGAACTTCTAGGGAGTCATCT 58.714 47.826 0.00 0.00 0.00 2.90
4875 6901 9.613428 TTTCCTCGACATTTATGATGAATACTT 57.387 29.630 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.