Multiple sequence alignment - TraesCS5A01G388200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G388200 chr5A 100.000 4442 0 0 1 4442 584964409 584968850 0.000000e+00 8203.0
1 TraesCS5A01G388200 chr5A 81.433 307 43 13 1507 1806 585396827 585397126 5.740000e-59 239.0
2 TraesCS5A01G388200 chr5A 86.473 207 28 0 1605 1811 585234689 585234895 1.240000e-55 228.0
3 TraesCS5A01G388200 chr5A 83.240 179 30 0 2033 2211 585397481 585397659 9.880000e-37 165.0
4 TraesCS5A01G388200 chr5A 83.133 166 12 10 976 1138 584941432 584941584 2.150000e-28 137.0
5 TraesCS5A01G388200 chr5A 84.536 97 15 0 1279 1375 585067552 585067648 3.660000e-16 97.1
6 TraesCS5A01G388200 chr5D 89.455 3613 210 94 1 3521 464490204 464493737 0.000000e+00 4403.0
7 TraesCS5A01G388200 chr5D 86.645 936 76 19 1 932 464527732 464526842 0.000000e+00 990.0
8 TraesCS5A01G388200 chr5D 87.229 783 81 14 2 779 464500301 464499533 0.000000e+00 874.0
9 TraesCS5A01G388200 chr5D 87.464 343 23 12 3746 4069 464493991 464494332 1.170000e-100 377.0
10 TraesCS5A01G388200 chr5D 89.630 270 22 6 4124 4391 464495014 464495279 5.500000e-89 339.0
11 TraesCS5A01G388200 chr5D 81.046 306 46 12 1507 1806 464990558 464990857 2.670000e-57 233.0
12 TraesCS5A01G388200 chr5D 77.901 362 48 23 571 928 464522942 464522609 3.510000e-46 196.0
13 TraesCS5A01G388200 chr5D 91.852 135 5 2 3598 3732 464493772 464493900 2.730000e-42 183.0
14 TraesCS5A01G388200 chr5D 84.358 179 28 0 2033 2211 464991196 464991374 4.570000e-40 176.0
15 TraesCS5A01G388200 chr5D 78.571 224 46 2 2025 2247 464917485 464917707 3.580000e-31 147.0
16 TraesCS5A01G388200 chr5D 77.500 280 33 21 571 847 464523700 464523448 1.670000e-29 141.0
17 TraesCS5A01G388200 chr5D 83.505 97 12 3 1281 1375 464641677 464641771 2.200000e-13 87.9
18 TraesCS5A01G388200 chr5D 80.374 107 7 8 998 1103 464521194 464521101 7.970000e-08 69.4
19 TraesCS5A01G388200 chr5B 91.435 1658 83 34 1836 3442 571836295 571834646 0.000000e+00 2220.0
20 TraesCS5A01G388200 chr5B 89.611 1338 63 23 498 1812 571837650 571836366 0.000000e+00 1631.0
21 TraesCS5A01G388200 chr5B 88.060 201 24 0 1606 1806 572342096 572342296 5.740000e-59 239.0
22 TraesCS5A01G388200 chr5B 88.889 180 11 6 3750 3928 571827726 571827555 3.480000e-51 213.0
23 TraesCS5A01G388200 chr5B 83.333 180 28 2 2033 2211 572342649 572342827 9.880000e-37 165.0
24 TraesCS5A01G388200 chr5B 72.848 453 94 22 1279 1713 571711290 571710849 1.300000e-25 128.0
25 TraesCS5A01G388200 chr5B 83.465 127 10 9 3952 4069 571827559 571827435 1.690000e-19 108.0
26 TraesCS5A01G388200 chr5B 81.905 105 17 2 288 390 441667355 441667251 2.200000e-13 87.9
27 TraesCS5A01G388200 chr2B 89.837 1102 93 14 2352 3445 777170237 777169147 0.000000e+00 1397.0
28 TraesCS5A01G388200 chr2B 91.791 402 27 4 1873 2268 777170774 777170373 5.020000e-154 555.0
29 TraesCS5A01G388200 chr2B 96.530 317 9 1 1494 1810 777171206 777170892 1.420000e-144 523.0
30 TraesCS5A01G388200 chr2B 85.156 256 30 5 1171 1424 777171602 777171353 5.700000e-64 255.0
31 TraesCS5A01G388200 chr2A 89.254 1005 78 18 1873 2867 779293546 779294530 0.000000e+00 1230.0
32 TraesCS5A01G388200 chr2A 92.871 505 31 3 2941 3444 779294910 779295410 0.000000e+00 728.0
33 TraesCS5A01G388200 chr2A 96.795 312 8 1 1494 1805 779293138 779293447 1.830000e-143 520.0
34 TraesCS5A01G388200 chr2A 85.098 255 29 7 1171 1424 779292758 779293004 7.380000e-63 252.0
35 TraesCS5A01G388200 chr2A 89.189 74 6 2 757 830 779161258 779161187 1.700000e-14 91.6
36 TraesCS5A01G388200 chr2A 88.000 75 8 1 332 406 526115054 526115127 2.200000e-13 87.9
37 TraesCS5A01G388200 chr2A 97.917 48 1 0 782 829 775085708 775085661 2.850000e-12 84.2
38 TraesCS5A01G388200 chr2A 86.957 69 3 3 762 829 190308055 190307992 6.160000e-09 73.1
39 TraesCS5A01G388200 chr2D 93.191 514 35 0 2352 2865 634256779 634256266 0.000000e+00 756.0
40 TraesCS5A01G388200 chr2D 92.292 506 36 1 2941 3446 634256134 634255632 0.000000e+00 715.0
41 TraesCS5A01G388200 chr2D 92.269 401 25 4 1873 2267 634257343 634256943 8.340000e-157 564.0
42 TraesCS5A01G388200 chr2D 95.092 326 14 1 1494 1819 634257770 634257447 3.060000e-141 512.0
43 TraesCS5A01G388200 chr2D 86.275 255 26 7 1171 1424 634258132 634257886 7.320000e-68 268.0
44 TraesCS5A01G388200 chr4B 87.179 78 3 4 759 829 4890102 4890025 1.020000e-11 82.4
45 TraesCS5A01G388200 chr4B 100.000 31 0 0 291 321 80050328 80050298 1.730000e-04 58.4
46 TraesCS5A01G388200 chr3A 88.732 71 3 1 759 829 44358193 44358258 1.020000e-11 82.4
47 TraesCS5A01G388200 chr3D 80.583 103 13 6 288 386 49488456 49488555 6.160000e-09 73.1
48 TraesCS5A01G388200 chr7D 80.682 88 14 3 288 373 4583858 4583944 1.030000e-06 65.8
49 TraesCS5A01G388200 chr7A 82.432 74 10 3 294 365 393762340 393762412 1.330000e-05 62.1
50 TraesCS5A01G388200 chr4D 100.000 31 0 0 292 322 461493416 461493446 1.730000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G388200 chr5A 584964409 584968850 4441 False 8203.0 8203 100.00000 1 4442 1 chr5A.!!$F2 4441
1 TraesCS5A01G388200 chr5A 585396827 585397659 832 False 202.0 239 82.33650 1507 2211 2 chr5A.!!$F5 704
2 TraesCS5A01G388200 chr5D 464490204 464495279 5075 False 1325.5 4403 89.60025 1 4391 4 chr5D.!!$F3 4390
3 TraesCS5A01G388200 chr5D 464499533 464500301 768 True 874.0 874 87.22900 2 779 1 chr5D.!!$R1 777
4 TraesCS5A01G388200 chr5D 464521101 464527732 6631 True 349.1 990 80.60500 1 1103 4 chr5D.!!$R2 1102
5 TraesCS5A01G388200 chr5D 464990558 464991374 816 False 204.5 233 82.70200 1507 2211 2 chr5D.!!$F4 704
6 TraesCS5A01G388200 chr5B 571834646 571837650 3004 True 1925.5 2220 90.52300 498 3442 2 chr5B.!!$R4 2944
7 TraesCS5A01G388200 chr5B 572342096 572342827 731 False 202.0 239 85.69650 1606 2211 2 chr5B.!!$F1 605
8 TraesCS5A01G388200 chr2B 777169147 777171602 2455 True 682.5 1397 90.82850 1171 3445 4 chr2B.!!$R1 2274
9 TraesCS5A01G388200 chr2A 779292758 779295410 2652 False 682.5 1230 91.00450 1171 3444 4 chr2A.!!$F2 2273
10 TraesCS5A01G388200 chr2D 634255632 634258132 2500 True 563.0 756 91.82380 1171 3446 5 chr2D.!!$R1 2275

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
933 952 0.036388 GAACTGGGACTCGATTGCCA 60.036 55.0 15.16 15.16 35.36 4.92 F
1094 6709 0.031314 CAGTCCATCGACCTGATCCG 59.969 60.0 0.00 0.00 40.12 4.18 F
1127 6742 0.810031 AAATTCATCGCCTCCGTCGG 60.810 55.0 4.39 4.39 35.54 4.79 F
2305 8195 0.107214 CTGCACCCGTCCCATACATT 60.107 55.0 0.00 0.00 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2305 8195 0.309302 CGACAAAATGACAACGGGCA 59.691 50.0 0.0 0.0 0.00 5.36 R
2306 8196 0.589223 TCGACAAAATGACAACGGGC 59.411 50.0 0.0 0.0 0.00 6.13 R
3040 9365 0.654683 GCGTAGTCGTAGTCGTCCAT 59.345 55.0 0.0 0.0 39.49 3.41 R
4160 11210 0.036010 AGAAAGCAGGGTGACATCGG 60.036 55.0 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 1.668294 CGAGGGAGCAGAACACTGT 59.332 57.895 0.00 0.00 34.51 3.55
32 33 0.250513 GGGAGCAGAACACTGTAGGG 59.749 60.000 0.00 0.00 34.51 3.53
49 50 1.507630 GGCGCAATGAACATGCTCA 59.492 52.632 10.83 0.40 41.64 4.26
78 79 2.016318 CGGATAATTGCTCCAGTTGCA 58.984 47.619 8.96 0.00 38.80 4.08
94 95 5.450965 CCAGTTGCATCAATTCCAGTATTCC 60.451 44.000 0.00 0.00 0.00 3.01
99 100 4.402155 GCATCAATTCCAGTATTCCCACAA 59.598 41.667 0.00 0.00 0.00 3.33
110 111 5.016173 AGTATTCCCACAAAAAGCAGCATA 58.984 37.500 0.00 0.00 0.00 3.14
121 122 7.972277 CACAAAAAGCAGCATAGATGTTATCTT 59.028 33.333 0.00 0.00 40.76 2.40
147 148 6.496565 TGGTTGTTCATAATGTGGGAAATTCT 59.503 34.615 0.00 0.00 0.00 2.40
176 177 1.077787 TTGCCCGCTAAGACCATGG 60.078 57.895 11.19 11.19 0.00 3.66
213 214 2.039348 GCTACACCAAAACTGGACCCTA 59.961 50.000 0.00 0.00 0.00 3.53
224 225 4.057063 ACTGGACCCTAACTAGTTAGCA 57.943 45.455 29.72 22.05 40.79 3.49
227 228 5.308759 ACTGGACCCTAACTAGTTAGCAAAA 59.691 40.000 29.72 16.01 40.79 2.44
228 229 6.183361 ACTGGACCCTAACTAGTTAGCAAAAA 60.183 38.462 29.72 16.84 40.79 1.94
229 230 6.786122 TGGACCCTAACTAGTTAGCAAAAAT 58.214 36.000 29.72 14.58 40.79 1.82
250 255 3.793797 TCTCCGTGCGAATATCTTCAA 57.206 42.857 0.00 0.00 0.00 2.69
356 361 2.475187 GCGTGTTGAGATGTCATGCTTC 60.475 50.000 0.00 0.00 39.88 3.86
543 549 7.734538 ACAAAGAAACAACAACAAGATTACG 57.265 32.000 0.00 0.00 0.00 3.18
664 672 1.734465 GGAGTGAACCAGAAATCAGCG 59.266 52.381 0.00 0.00 0.00 5.18
688 696 8.535335 GCGTATCCATCCATCCATATATAAGAT 58.465 37.037 0.00 0.00 0.00 2.40
737 748 0.678366 AAGCAACCCACAACGTGTCA 60.678 50.000 0.00 0.00 0.00 3.58
772 785 3.462021 GAGGTGCCTGTGAAGTATGATC 58.538 50.000 0.00 0.00 0.00 2.92
780 796 6.045318 GCCTGTGAAGTATGATCGCATATAT 58.955 40.000 0.00 0.00 39.09 0.86
781 797 6.536582 GCCTGTGAAGTATGATCGCATATATT 59.463 38.462 0.00 0.00 39.09 1.28
782 798 7.706607 GCCTGTGAAGTATGATCGCATATATTA 59.293 37.037 0.00 0.00 39.09 0.98
783 799 9.755804 CCTGTGAAGTATGATCGCATATATTAT 57.244 33.333 0.00 0.00 39.09 1.28
831 847 2.669569 GGCTTGCTGCTCGGTGAA 60.670 61.111 0.00 0.00 42.39 3.18
833 849 1.589716 GGCTTGCTGCTCGGTGAAAT 61.590 55.000 0.00 0.00 42.39 2.17
848 864 1.804151 TGAAATCTTTCTGGCCGAACG 59.196 47.619 9.15 8.13 38.02 3.95
867 883 6.237490 CCGAACGAGATTATAAACATATCCGC 60.237 42.308 0.00 0.00 0.00 5.54
918 937 7.871463 ACTAATAAACGTACAAGAAGCAGAACT 59.129 33.333 0.00 0.00 0.00 3.01
932 951 0.250513 AGAACTGGGACTCGATTGCC 59.749 55.000 6.35 6.35 0.00 4.52
933 952 0.036388 GAACTGGGACTCGATTGCCA 60.036 55.000 15.16 15.16 35.36 4.92
935 954 2.989639 TGGGACTCGATTGCCAGG 59.010 61.111 12.08 0.00 30.79 4.45
937 956 2.514824 GGACTCGATTGCCAGGCC 60.515 66.667 9.64 0.00 0.00 5.19
939 958 4.473520 ACTCGATTGCCAGGCCCG 62.474 66.667 9.64 10.28 0.00 6.13
940 959 4.473520 CTCGATTGCCAGGCCCGT 62.474 66.667 9.64 0.00 0.00 5.28
941 960 4.467084 TCGATTGCCAGGCCCGTC 62.467 66.667 9.64 3.28 0.00 4.79
942 961 4.776322 CGATTGCCAGGCCCGTCA 62.776 66.667 9.64 0.00 0.00 4.35
943 962 2.124151 GATTGCCAGGCCCGTCAT 60.124 61.111 9.64 0.00 0.00 3.06
944 963 2.440796 ATTGCCAGGCCCGTCATG 60.441 61.111 9.64 0.00 0.00 3.07
946 965 4.720902 TGCCAGGCCCGTCATGTG 62.721 66.667 9.64 0.00 0.00 3.21
1034 6636 0.522626 TGCTCGATCGGTTACAACGA 59.477 50.000 16.41 0.00 45.19 3.85
1048 6655 0.458543 CAACGACCTAGATGCGCACT 60.459 55.000 14.90 15.05 0.00 4.40
1060 6667 2.099638 CGCACTGCTCGCTACGTA 59.900 61.111 0.00 0.00 0.00 3.57
1061 6668 2.215604 CGCACTGCTCGCTACGTAC 61.216 63.158 0.00 0.00 0.00 3.67
1064 6671 2.024305 CTGCTCGCTACGTACCGG 59.976 66.667 10.20 0.00 0.00 5.28
1094 6709 0.031314 CAGTCCATCGACCTGATCCG 59.969 60.000 0.00 0.00 40.12 4.18
1126 6741 1.847818 TAAATTCATCGCCTCCGTCG 58.152 50.000 0.00 0.00 35.54 5.12
1127 6742 0.810031 AAATTCATCGCCTCCGTCGG 60.810 55.000 4.39 4.39 35.54 4.79
1143 6761 2.286523 CGGCCACTCCTCACTCCTT 61.287 63.158 2.24 0.00 0.00 3.36
1145 6763 1.276622 GGCCACTCCTCACTCCTTTA 58.723 55.000 0.00 0.00 0.00 1.85
1147 6765 1.066071 GCCACTCCTCACTCCTTTACC 60.066 57.143 0.00 0.00 0.00 2.85
1152 6770 3.246167 ACTCCTCACTCCTTTACCCTCAT 60.246 47.826 0.00 0.00 0.00 2.90
1163 6781 0.904649 TACCCTCATCCACACTGCTG 59.095 55.000 0.00 0.00 0.00 4.41
1164 6782 1.748122 CCCTCATCCACACTGCTGC 60.748 63.158 0.00 0.00 0.00 5.25
1181 6799 2.804212 GCTGCAGTTTGAAATGGCAACT 60.804 45.455 16.64 0.00 33.58 3.16
1307 6940 2.903357 GAAGCAGCCGATCCAGGA 59.097 61.111 0.00 0.00 0.00 3.86
1461 7111 3.876589 TTCCTGCTTCACCGGCGAC 62.877 63.158 9.30 0.00 0.00 5.19
1466 7116 3.090219 GCTTCACCGGCGACCCTAT 62.090 63.158 9.30 0.00 0.00 2.57
1467 7117 1.227263 CTTCACCGGCGACCCTATG 60.227 63.158 9.30 0.00 0.00 2.23
1489 7187 3.864686 CGCGCGGGTCTGATTTGG 61.865 66.667 24.84 0.00 0.00 3.28
1828 7574 2.846039 ACCAATGTCTACTCGCTACG 57.154 50.000 0.00 0.00 0.00 3.51
1834 7594 3.938778 TGTCTACTCGCTACGTATGTG 57.061 47.619 0.00 0.00 0.00 3.21
1844 7604 3.912563 CGCTACGTATGTGTATGTCATCC 59.087 47.826 0.00 0.00 32.45 3.51
1865 7625 7.387673 TCATCCTGACAGCCGTATATATTTTTG 59.612 37.037 0.00 0.00 0.00 2.44
2083 7970 2.433491 CGCCACGGGATCAACGAA 60.433 61.111 14.79 0.00 34.93 3.85
2220 8107 3.248602 GTCAAGATGCACGAGAACAAGTT 59.751 43.478 0.00 0.00 0.00 2.66
2275 8165 4.331717 CGCTTCAGGGTACGTATGAATTTT 59.668 41.667 9.81 0.00 32.82 1.82
2294 8184 1.647346 TAATTACTTCGCTGCACCCG 58.353 50.000 0.00 0.00 0.00 5.28
2305 8195 0.107214 CTGCACCCGTCCCATACATT 60.107 55.000 0.00 0.00 0.00 2.71
2306 8196 0.393673 TGCACCCGTCCCATACATTG 60.394 55.000 0.00 0.00 0.00 2.82
2307 8197 1.724582 GCACCCGTCCCATACATTGC 61.725 60.000 0.00 0.00 0.00 3.56
2308 8198 1.101049 CACCCGTCCCATACATTGCC 61.101 60.000 0.00 0.00 0.00 4.52
2309 8199 1.528309 CCCGTCCCATACATTGCCC 60.528 63.158 0.00 0.00 0.00 5.36
2310 8200 1.891919 CCGTCCCATACATTGCCCG 60.892 63.158 0.00 0.00 0.00 6.13
2320 8293 4.493547 CATACATTGCCCGTTGTCATTTT 58.506 39.130 0.00 0.00 0.00 1.82
2343 8329 0.792640 GAGCACTTGACACGGTGATG 59.207 55.000 16.29 6.02 35.69 3.07
2350 8336 2.767536 GACACGGTGATGTCCATGG 58.232 57.895 16.29 4.97 42.74 3.66
2709 8707 1.208614 GCTGCTCAAGAACGGCAAG 59.791 57.895 0.00 0.00 38.10 4.01
2750 8748 1.380515 TCCTCCCGCTCTCCAAGAG 60.381 63.158 0.00 0.00 45.04 2.85
2870 8872 2.505557 CGGCCAAGGTACGTCGTC 60.506 66.667 0.00 0.00 0.00 4.20
2886 8908 1.183511 CGTCATCTCGTCACACATCG 58.816 55.000 0.00 0.00 0.00 3.84
2887 8909 1.465856 CGTCATCTCGTCACACATCGT 60.466 52.381 0.00 0.00 0.00 3.73
2888 8910 2.222953 CGTCATCTCGTCACACATCGTA 60.223 50.000 0.00 0.00 0.00 3.43
2889 8911 3.546218 CGTCATCTCGTCACACATCGTAT 60.546 47.826 0.00 0.00 0.00 3.06
2890 8912 3.969352 GTCATCTCGTCACACATCGTATC 59.031 47.826 0.00 0.00 0.00 2.24
2892 8914 3.946308 TCTCGTCACACATCGTATCTC 57.054 47.619 0.00 0.00 0.00 2.75
2893 8915 3.267483 TCTCGTCACACATCGTATCTCA 58.733 45.455 0.00 0.00 0.00 3.27
2895 8917 3.952535 TCGTCACACATCGTATCTCATG 58.047 45.455 0.00 0.00 0.00 3.07
2897 8919 4.095782 TCGTCACACATCGTATCTCATGAA 59.904 41.667 0.00 0.00 0.00 2.57
2899 8921 4.504461 GTCACACATCGTATCTCATGAACC 59.496 45.833 0.00 0.00 0.00 3.62
2902 8924 4.112634 CACATCGTATCTCATGAACCGTT 58.887 43.478 0.00 0.00 0.00 4.44
2904 8926 4.098044 ACATCGTATCTCATGAACCGTTCT 59.902 41.667 12.43 0.00 0.00 3.01
2905 8927 4.713824 TCGTATCTCATGAACCGTTCTT 57.286 40.909 12.43 3.43 0.00 2.52
2906 8928 4.421058 TCGTATCTCATGAACCGTTCTTG 58.579 43.478 17.17 17.17 36.48 3.02
2907 8929 4.082408 TCGTATCTCATGAACCGTTCTTGT 60.082 41.667 20.64 9.35 36.52 3.16
2908 8930 4.625742 CGTATCTCATGAACCGTTCTTGTT 59.374 41.667 20.64 12.61 36.52 2.83
2912 8934 4.452114 TCTCATGAACCGTTCTTGTTGATG 59.548 41.667 20.64 11.80 38.26 3.07
2913 8935 4.133820 TCATGAACCGTTCTTGTTGATGT 58.866 39.130 20.64 0.00 38.14 3.06
2914 8936 4.213270 TCATGAACCGTTCTTGTTGATGTC 59.787 41.667 20.64 0.00 38.14 3.06
2915 8937 2.542178 TGAACCGTTCTTGTTGATGTCG 59.458 45.455 12.43 0.00 0.00 4.35
2916 8938 2.519377 ACCGTTCTTGTTGATGTCGA 57.481 45.000 0.00 0.00 0.00 4.20
2918 8940 4.182693 ACCGTTCTTGTTGATGTCGATA 57.817 40.909 0.00 0.00 0.00 2.92
2920 8942 3.306166 CCGTTCTTGTTGATGTCGATACC 59.694 47.826 0.00 0.00 0.00 2.73
2921 8943 3.306166 CGTTCTTGTTGATGTCGATACCC 59.694 47.826 0.00 0.00 0.00 3.69
2936 8965 4.996758 TCGATACCCATGTTGATGCTTATG 59.003 41.667 0.00 0.00 0.00 1.90
2937 8966 4.378770 CGATACCCATGTTGATGCTTATGC 60.379 45.833 0.00 0.00 40.20 3.14
3040 9365 1.671742 GGCTCCGTCTCCAAGAACA 59.328 57.895 0.00 0.00 0.00 3.18
3063 9388 1.012889 CGACTACGACTACGCCGTC 60.013 63.158 0.00 0.00 43.96 4.79
3121 9446 0.602905 CGACAACCAGAACCTCACCC 60.603 60.000 0.00 0.00 0.00 4.61
3342 9667 4.415332 CGGACGTGGGTCAGGTCG 62.415 72.222 12.53 6.48 46.21 4.79
3453 9778 2.682155 GCAGCTAGCTAGGAGTGTTT 57.318 50.000 18.86 0.00 41.15 2.83
3456 9781 3.516615 CAGCTAGCTAGGAGTGTTTGTC 58.483 50.000 18.86 1.47 0.00 3.18
3464 9792 4.214332 GCTAGGAGTGTTTGTCTTTTCCTG 59.786 45.833 1.27 0.00 36.51 3.86
3466 9794 2.952310 GGAGTGTTTGTCTTTTCCTGCT 59.048 45.455 0.00 0.00 0.00 4.24
3475 9803 3.641436 TGTCTTTTCCTGCTCTAGTGTGA 59.359 43.478 0.00 0.00 0.00 3.58
3476 9804 4.241681 GTCTTTTCCTGCTCTAGTGTGAG 58.758 47.826 0.00 0.00 37.16 3.51
3517 9845 6.750501 CGTGAGTAGTGAGAATCGGAAATAAA 59.249 38.462 0.00 0.00 38.61 1.40
3518 9846 7.435488 CGTGAGTAGTGAGAATCGGAAATAAAT 59.565 37.037 0.00 0.00 38.61 1.40
3519 9847 8.543774 GTGAGTAGTGAGAATCGGAAATAAATG 58.456 37.037 0.00 0.00 38.61 2.32
3520 9848 8.474831 TGAGTAGTGAGAATCGGAAATAAATGA 58.525 33.333 0.00 0.00 38.61 2.57
3521 9849 8.879342 AGTAGTGAGAATCGGAAATAAATGAG 57.121 34.615 0.00 0.00 38.61 2.90
3522 9850 7.928706 AGTAGTGAGAATCGGAAATAAATGAGG 59.071 37.037 0.00 0.00 38.61 3.86
3523 9851 6.889198 AGTGAGAATCGGAAATAAATGAGGA 58.111 36.000 0.00 0.00 38.61 3.71
3524 9852 6.989169 AGTGAGAATCGGAAATAAATGAGGAG 59.011 38.462 0.00 0.00 38.61 3.69
3525 9853 6.986817 GTGAGAATCGGAAATAAATGAGGAGA 59.013 38.462 0.00 0.00 38.61 3.71
3526 9854 7.170658 GTGAGAATCGGAAATAAATGAGGAGAG 59.829 40.741 0.00 0.00 38.61 3.20
3527 9855 6.529220 AGAATCGGAAATAAATGAGGAGAGG 58.471 40.000 0.00 0.00 0.00 3.69
3528 9856 5.896073 ATCGGAAATAAATGAGGAGAGGT 57.104 39.130 0.00 0.00 0.00 3.85
3529 9857 5.023533 TCGGAAATAAATGAGGAGAGGTG 57.976 43.478 0.00 0.00 0.00 4.00
3530 9858 4.130118 CGGAAATAAATGAGGAGAGGTGG 58.870 47.826 0.00 0.00 0.00 4.61
3531 9859 4.141711 CGGAAATAAATGAGGAGAGGTGGA 60.142 45.833 0.00 0.00 0.00 4.02
3532 9860 5.455326 CGGAAATAAATGAGGAGAGGTGGAT 60.455 44.000 0.00 0.00 0.00 3.41
3536 9864 4.989875 AAATGAGGAGAGGTGGATATGG 57.010 45.455 0.00 0.00 0.00 2.74
3544 9872 4.823989 GGAGAGGTGGATATGGTTTTGATG 59.176 45.833 0.00 0.00 0.00 3.07
3561 9889 2.813908 GGCGTCGCCCTGTAACTG 60.814 66.667 26.23 0.00 44.06 3.16
3562 9890 2.048503 GCGTCGCCCTGTAACTGT 60.049 61.111 5.75 0.00 0.00 3.55
3563 9891 1.213537 GCGTCGCCCTGTAACTGTA 59.786 57.895 5.75 0.00 0.00 2.74
3565 9893 1.625616 CGTCGCCCTGTAACTGTAAG 58.374 55.000 0.00 0.00 42.29 2.34
3586 9914 3.490800 TTCGTTACGAACATCCGATGA 57.509 42.857 16.56 0.00 41.05 2.92
3587 9915 3.490800 TCGTTACGAACATCCGATGAA 57.509 42.857 15.47 0.00 31.06 2.57
3588 9916 3.173599 TCGTTACGAACATCCGATGAAC 58.826 45.455 15.47 7.46 31.06 3.18
3589 9917 3.119743 TCGTTACGAACATCCGATGAACT 60.120 43.478 15.47 0.00 31.06 3.01
3590 9918 3.611113 CGTTACGAACATCCGATGAACTT 59.389 43.478 15.47 0.00 0.00 2.66
3591 9919 4.490319 CGTTACGAACATCCGATGAACTTG 60.490 45.833 15.47 5.68 0.00 3.16
3592 9920 3.313012 ACGAACATCCGATGAACTTGA 57.687 42.857 15.47 0.00 0.00 3.02
3593 9921 3.659786 ACGAACATCCGATGAACTTGAA 58.340 40.909 15.47 0.00 0.00 2.69
3594 9922 4.062293 ACGAACATCCGATGAACTTGAAA 58.938 39.130 15.47 0.00 0.00 2.69
3595 9923 4.695455 ACGAACATCCGATGAACTTGAAAT 59.305 37.500 15.47 0.00 0.00 2.17
3596 9924 5.163854 ACGAACATCCGATGAACTTGAAATC 60.164 40.000 15.47 0.00 0.00 2.17
3637 9965 7.010923 GCTGTCGAAATTCAGTCTATCTTGAAT 59.989 37.037 3.10 0.00 34.57 2.57
3640 9968 9.092876 GTCGAAATTCAGTCTATCTTGAATTCT 57.907 33.333 7.05 4.50 39.26 2.40
3665 9993 1.006102 CTCGAGTTGGTTCTGCGGT 60.006 57.895 3.62 0.00 0.00 5.68
3666 9994 1.284982 CTCGAGTTGGTTCTGCGGTG 61.285 60.000 3.62 0.00 0.00 4.94
3667 9995 2.946762 GAGTTGGTTCTGCGGTGC 59.053 61.111 0.00 0.00 0.00 5.01
3668 9996 2.954753 GAGTTGGTTCTGCGGTGCG 61.955 63.158 0.00 0.00 0.00 5.34
3669 9997 4.025401 GTTGGTTCTGCGGTGCGG 62.025 66.667 0.00 0.00 36.06 5.69
3678 10006 2.125512 GCGGTGCGGACTCTCATT 60.126 61.111 7.11 0.00 0.00 2.57
3681 10009 0.389817 CGGTGCGGACTCTCATTCAA 60.390 55.000 7.11 0.00 0.00 2.69
3685 10013 1.347707 TGCGGACTCTCATTCAAAGGT 59.652 47.619 0.00 0.00 0.00 3.50
3728 10056 2.029288 CACGCCGACTGACAGCAAT 61.029 57.895 1.25 0.00 0.00 3.56
3729 10057 2.029288 ACGCCGACTGACAGCAATG 61.029 57.895 1.25 0.00 0.00 2.82
3730 10058 1.737735 CGCCGACTGACAGCAATGA 60.738 57.895 1.25 0.00 0.00 2.57
3731 10059 1.086067 CGCCGACTGACAGCAATGAT 61.086 55.000 1.25 0.00 0.00 2.45
3732 10060 0.376152 GCCGACTGACAGCAATGATG 59.624 55.000 1.25 0.00 0.00 3.07
3733 10061 1.012086 CCGACTGACAGCAATGATGG 58.988 55.000 2.82 0.00 0.00 3.51
3734 10062 1.012086 CGACTGACAGCAATGATGGG 58.988 55.000 2.82 0.00 0.00 4.00
3735 10063 1.405933 CGACTGACAGCAATGATGGGA 60.406 52.381 2.82 0.00 0.00 4.37
3737 10065 3.285484 GACTGACAGCAATGATGGGATT 58.715 45.455 2.82 0.00 0.00 3.01
3738 10066 3.698040 GACTGACAGCAATGATGGGATTT 59.302 43.478 2.82 0.00 0.00 2.17
3739 10067 4.858850 ACTGACAGCAATGATGGGATTTA 58.141 39.130 2.82 0.00 0.00 1.40
3742 10146 4.096231 TGACAGCAATGATGGGATTTAACG 59.904 41.667 2.82 0.00 0.00 3.18
3744 10148 4.336433 ACAGCAATGATGGGATTTAACGAG 59.664 41.667 2.82 0.00 0.00 4.18
3748 10152 6.322201 AGCAATGATGGGATTTAACGAGATTT 59.678 34.615 0.00 0.00 0.00 2.17
3765 10169 5.004821 CGAGATTTAGTGACAAGGAATCGTG 59.995 44.000 0.00 0.00 33.22 4.35
3767 10171 3.394674 TTAGTGACAAGGAATCGTGCA 57.605 42.857 0.00 0.00 0.00 4.57
3770 10174 1.601903 GTGACAAGGAATCGTGCACAA 59.398 47.619 18.64 0.00 33.54 3.33
3775 10179 1.453155 AGGAATCGTGCACAATGACC 58.547 50.000 18.64 11.47 0.00 4.02
3825 10235 6.158598 TCAGATTTTTGAAACCTATTGCAGC 58.841 36.000 0.00 0.00 0.00 5.25
3853 10263 6.155565 GGCTAGGTTTGGGGTTGTATATTTTT 59.844 38.462 0.00 0.00 0.00 1.94
3855 10265 6.614694 AGGTTTGGGGTTGTATATTTTTCC 57.385 37.500 0.00 0.00 0.00 3.13
3891 10301 6.640907 GGGTCTCAATTTGTCATTTGTAACAC 59.359 38.462 0.00 0.00 0.00 3.32
3902 10312 3.617540 TTTGTAACACAAGACATGCCG 57.382 42.857 0.00 0.00 39.53 5.69
3904 10314 2.139917 TGTAACACAAGACATGCCGAC 58.860 47.619 0.00 0.00 0.00 4.79
3908 10318 0.647410 CACAAGACATGCCGACGATC 59.353 55.000 0.00 0.00 0.00 3.69
3910 10320 0.525455 CAAGACATGCCGACGATCGA 60.525 55.000 24.34 0.00 43.74 3.59
3929 10339 3.081804 CGAATTTAGTTTGGCCAGAGGT 58.918 45.455 5.11 0.00 0.00 3.85
3965 10375 3.622163 GCTGACTTCAGAGATGTTGATGG 59.378 47.826 10.54 0.00 46.59 3.51
3968 10378 4.529769 TGACTTCAGAGATGTTGATGGAGT 59.470 41.667 0.00 0.00 0.00 3.85
3977 10387 0.320771 GTTGATGGAGTGGCGTGAGT 60.321 55.000 0.00 0.00 0.00 3.41
4001 10416 5.388654 AGGGTTTGATGTCACTCATTTCTT 58.611 37.500 0.00 0.00 36.83 2.52
4036 10452 2.842208 TTGCTGTTTTGTTCTGTCCG 57.158 45.000 0.00 0.00 0.00 4.79
4044 10460 2.762535 TTGTTCTGTCCGATCCTTCC 57.237 50.000 0.00 0.00 0.00 3.46
4050 10473 1.330655 TGTCCGATCCTTCCTCCTGC 61.331 60.000 0.00 0.00 0.00 4.85
4104 11145 8.136057 TGACGCATAAAATCACAATTTTGTTT 57.864 26.923 6.42 0.00 43.32 2.83
4144 11194 8.870879 AGAGAAACGCATAAAAGATAACTGTAC 58.129 33.333 0.00 0.00 0.00 2.90
4147 11197 5.121105 ACGCATAAAAGATAACTGTACCCC 58.879 41.667 0.00 0.00 0.00 4.95
4148 11198 5.120399 CGCATAAAAGATAACTGTACCCCA 58.880 41.667 0.00 0.00 0.00 4.96
4149 11199 5.763204 CGCATAAAAGATAACTGTACCCCAT 59.237 40.000 0.00 0.00 0.00 4.00
4150 11200 6.073222 CGCATAAAAGATAACTGTACCCCATC 60.073 42.308 0.00 0.00 0.00 3.51
4152 11202 7.502561 GCATAAAAGATAACTGTACCCCATCTT 59.497 37.037 0.00 0.00 37.51 2.40
4153 11203 8.840321 CATAAAAGATAACTGTACCCCATCTTG 58.160 37.037 8.83 0.00 36.38 3.02
4154 11204 6.388619 AAAGATAACTGTACCCCATCTTGT 57.611 37.500 8.83 0.00 36.38 3.16
4155 11205 5.615925 AGATAACTGTACCCCATCTTGTC 57.384 43.478 0.00 0.00 0.00 3.18
4156 11206 5.030147 AGATAACTGTACCCCATCTTGTCA 58.970 41.667 0.00 0.00 0.00 3.58
4157 11207 3.418684 AACTGTACCCCATCTTGTCAC 57.581 47.619 0.00 0.00 0.00 3.67
4158 11208 2.334977 ACTGTACCCCATCTTGTCACA 58.665 47.619 0.00 0.00 0.00 3.58
4159 11209 2.912956 ACTGTACCCCATCTTGTCACAT 59.087 45.455 0.00 0.00 0.00 3.21
4160 11210 3.055094 ACTGTACCCCATCTTGTCACATC 60.055 47.826 0.00 0.00 0.00 3.06
4163 11213 0.541392 CCCCATCTTGTCACATCCGA 59.459 55.000 0.00 0.00 0.00 4.55
4169 11219 2.959516 TCTTGTCACATCCGATGTCAC 58.040 47.619 11.24 9.81 42.70 3.67
4178 11228 0.036388 TCCGATGTCACCCTGCTTTC 60.036 55.000 0.00 0.00 0.00 2.62
4188 11238 5.186021 TGTCACCCTGCTTTCTTTTAACAAA 59.814 36.000 0.00 0.00 0.00 2.83
4189 11239 6.127196 TGTCACCCTGCTTTCTTTTAACAAAT 60.127 34.615 0.00 0.00 0.00 2.32
4190 11240 7.068839 TGTCACCCTGCTTTCTTTTAACAAATA 59.931 33.333 0.00 0.00 0.00 1.40
4191 11241 8.088365 GTCACCCTGCTTTCTTTTAACAAATAT 58.912 33.333 0.00 0.00 0.00 1.28
4192 11242 8.303876 TCACCCTGCTTTCTTTTAACAAATATC 58.696 33.333 0.00 0.00 0.00 1.63
4193 11243 8.087750 CACCCTGCTTTCTTTTAACAAATATCA 58.912 33.333 0.00 0.00 0.00 2.15
4195 11245 9.657419 CCCTGCTTTCTTTTAACAAATATCAAT 57.343 29.630 0.00 0.00 0.00 2.57
4234 11284 9.883142 TGTGATTTTAGTCCAAGAAAACAAAAT 57.117 25.926 0.00 0.00 0.00 1.82
4236 11286 8.825745 TGATTTTAGTCCAAGAAAACAAAATGC 58.174 29.630 0.00 0.00 0.00 3.56
4237 11287 8.729805 ATTTTAGTCCAAGAAAACAAAATGCA 57.270 26.923 0.00 0.00 0.00 3.96
4260 11311 6.983890 GCATCTAAGAAAACAAAAGGGAAACA 59.016 34.615 0.00 0.00 0.00 2.83
4289 11340 3.431725 CCAGCCGGCGGAACTTTC 61.432 66.667 33.44 10.96 0.00 2.62
4296 11347 2.356673 GCGGAACTTTCGACCGGT 60.357 61.111 6.92 6.92 45.66 5.28
4317 11368 3.554324 GTCGTGCTCGCTTATTATTCCAA 59.446 43.478 2.69 0.00 36.96 3.53
4393 11444 5.627499 TGATAATGCCAAATCTTATCGGC 57.373 39.130 0.00 0.00 45.11 5.54
4394 11445 4.458989 TGATAATGCCAAATCTTATCGGCC 59.541 41.667 0.00 0.00 44.22 6.13
4395 11446 2.664402 ATGCCAAATCTTATCGGCCT 57.336 45.000 0.00 0.00 44.22 5.19
4396 11447 1.967319 TGCCAAATCTTATCGGCCTC 58.033 50.000 0.00 0.00 44.22 4.70
4397 11448 1.211703 TGCCAAATCTTATCGGCCTCA 59.788 47.619 0.00 0.00 44.22 3.86
4398 11449 1.604278 GCCAAATCTTATCGGCCTCAC 59.396 52.381 0.00 0.00 38.67 3.51
4399 11450 2.917933 CCAAATCTTATCGGCCTCACA 58.082 47.619 0.00 0.00 0.00 3.58
4400 11451 3.480470 CCAAATCTTATCGGCCTCACAT 58.520 45.455 0.00 0.00 0.00 3.21
4401 11452 3.885297 CCAAATCTTATCGGCCTCACATT 59.115 43.478 0.00 0.00 0.00 2.71
4402 11453 4.261322 CCAAATCTTATCGGCCTCACATTG 60.261 45.833 0.00 0.00 0.00 2.82
4403 11454 3.845781 ATCTTATCGGCCTCACATTGT 57.154 42.857 0.00 0.00 0.00 2.71
4404 11455 3.627395 TCTTATCGGCCTCACATTGTT 57.373 42.857 0.00 0.00 0.00 2.83
4405 11456 3.270027 TCTTATCGGCCTCACATTGTTG 58.730 45.455 0.00 0.00 0.00 3.33
4406 11457 3.055458 TCTTATCGGCCTCACATTGTTGA 60.055 43.478 0.00 0.00 0.00 3.18
4407 11458 2.425143 ATCGGCCTCACATTGTTGAT 57.575 45.000 0.00 0.00 0.00 2.57
4408 11459 1.452110 TCGGCCTCACATTGTTGATG 58.548 50.000 0.00 0.00 41.71 3.07
4409 11460 0.452987 CGGCCTCACATTGTTGATGG 59.547 55.000 0.00 0.00 40.21 3.51
4410 11461 0.174162 GGCCTCACATTGTTGATGGC 59.826 55.000 0.00 9.36 40.21 4.40
4411 11462 0.179156 GCCTCACATTGTTGATGGCG 60.179 55.000 0.00 0.00 40.21 5.69
4412 11463 1.452110 CCTCACATTGTTGATGGCGA 58.548 50.000 0.00 0.00 40.21 5.54
4413 11464 2.019249 CCTCACATTGTTGATGGCGAT 58.981 47.619 0.00 0.00 40.21 4.58
4414 11465 2.223409 CCTCACATTGTTGATGGCGATG 60.223 50.000 0.00 0.00 40.21 3.84
4415 11466 1.744522 TCACATTGTTGATGGCGATGG 59.255 47.619 0.00 0.00 40.21 3.51
4416 11467 1.473677 CACATTGTTGATGGCGATGGT 59.526 47.619 0.00 0.00 40.21 3.55
4417 11468 1.473677 ACATTGTTGATGGCGATGGTG 59.526 47.619 0.00 0.00 40.21 4.17
4418 11469 1.105457 ATTGTTGATGGCGATGGTGG 58.895 50.000 0.00 0.00 0.00 4.61
4419 11470 1.594194 TTGTTGATGGCGATGGTGGC 61.594 55.000 0.00 0.00 0.00 5.01
4425 11476 2.194597 GGCGATGGTGGCCCAATA 59.805 61.111 0.00 0.00 46.04 1.90
4426 11477 1.454847 GGCGATGGTGGCCCAATAA 60.455 57.895 0.00 0.00 46.04 1.40
4427 11478 1.733526 GCGATGGTGGCCCAATAAC 59.266 57.895 0.00 0.00 46.04 1.89
4428 11479 1.034838 GCGATGGTGGCCCAATAACA 61.035 55.000 0.00 0.00 46.04 2.41
4429 11480 1.691196 CGATGGTGGCCCAATAACAT 58.309 50.000 0.00 0.00 46.04 2.71
4430 11481 1.608590 CGATGGTGGCCCAATAACATC 59.391 52.381 8.46 8.46 46.04 3.06
4431 11482 1.963515 GATGGTGGCCCAATAACATCC 59.036 52.381 7.46 0.00 46.04 3.51
4432 11483 1.006813 TGGTGGCCCAATAACATCCT 58.993 50.000 0.00 0.00 37.98 3.24
4433 11484 1.360852 TGGTGGCCCAATAACATCCTT 59.639 47.619 0.00 0.00 37.98 3.36
4434 11485 1.756538 GGTGGCCCAATAACATCCTTG 59.243 52.381 0.00 0.00 0.00 3.61
4435 11486 2.456577 GTGGCCCAATAACATCCTTGT 58.543 47.619 0.00 0.00 37.82 3.16
4436 11487 3.626222 GGTGGCCCAATAACATCCTTGTA 60.626 47.826 0.00 0.00 34.06 2.41
4437 11488 4.020543 GTGGCCCAATAACATCCTTGTAA 58.979 43.478 0.00 0.00 34.06 2.41
4438 11489 4.020543 TGGCCCAATAACATCCTTGTAAC 58.979 43.478 0.00 0.00 34.06 2.50
4439 11490 3.383505 GGCCCAATAACATCCTTGTAACC 59.616 47.826 0.00 0.00 34.06 2.85
4440 11491 3.383505 GCCCAATAACATCCTTGTAACCC 59.616 47.826 0.00 0.00 34.06 4.11
4441 11492 3.958147 CCCAATAACATCCTTGTAACCCC 59.042 47.826 0.00 0.00 34.06 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 0.394216 AGCATGTTCATTGCGCCCTA 60.394 50.000 4.18 0.00 44.82 3.53
32 33 0.169672 AGTGAGCATGTTCATTGCGC 59.830 50.000 15.71 0.00 44.82 6.09
49 50 3.397482 GAGCAATTATCCGAGATGCAGT 58.603 45.455 0.00 0.00 39.42 4.40
78 79 7.552050 TTTTTGTGGGAATACTGGAATTGAT 57.448 32.000 0.00 0.00 0.00 2.57
94 95 4.445452 ACATCTATGCTGCTTTTTGTGG 57.555 40.909 0.00 0.00 0.00 4.17
99 100 7.123247 ACCAAAGATAACATCTATGCTGCTTTT 59.877 33.333 0.00 0.00 39.08 2.27
121 122 6.678568 ATTTCCCACATTATGAACAACCAA 57.321 33.333 0.00 0.00 0.00 3.67
176 177 9.489084 TTTGGTGTAGCATATATTCAGTGATAC 57.511 33.333 0.00 0.00 35.82 2.24
213 214 6.567891 GCACGGAGAATTTTTGCTAACTAGTT 60.568 38.462 13.68 13.68 0.00 2.24
224 225 6.093495 TGAAGATATTCGCACGGAGAATTTTT 59.907 34.615 7.83 2.71 38.96 1.94
227 228 4.693283 TGAAGATATTCGCACGGAGAATT 58.307 39.130 7.83 0.00 38.96 2.17
228 229 4.322080 TGAAGATATTCGCACGGAGAAT 57.678 40.909 7.69 7.69 40.88 2.40
229 230 3.793797 TGAAGATATTCGCACGGAGAA 57.206 42.857 0.00 0.00 0.00 2.87
276 281 8.495148 CAATCATGCATGACAATTTCCATATTG 58.505 33.333 30.92 20.80 40.03 1.90
356 361 7.975616 CCCACTAACATATTTTTCTCAACATGG 59.024 37.037 0.00 0.00 0.00 3.66
422 427 4.881850 ACAATGTCGAAGGTGAAGAAAACT 59.118 37.500 0.00 0.00 0.00 2.66
428 434 5.362556 AATTGACAATGTCGAAGGTGAAG 57.637 39.130 7.48 0.00 34.95 3.02
458 464 6.480763 TCCACATTTGGTAATTAAGAGAGCA 58.519 36.000 0.00 0.00 44.35 4.26
537 543 9.344309 GATTCCTGTTATAGCTCTTACGTAATC 57.656 37.037 8.76 1.63 0.00 1.75
604 612 4.580580 ACCATCACCTGAACTCTTTCAAAC 59.419 41.667 0.00 0.00 41.34 2.93
608 616 4.008074 TCACCATCACCTGAACTCTTTC 57.992 45.455 0.00 0.00 0.00 2.62
612 620 2.069273 CGTTCACCATCACCTGAACTC 58.931 52.381 8.46 0.00 42.76 3.01
737 748 1.070758 GCACCTCGGATATGACCACAT 59.929 52.381 0.00 0.00 40.16 3.21
796 812 3.714144 AGCCCGGTTAGCTATCTCATAT 58.286 45.455 0.00 0.00 39.29 1.78
831 847 1.275291 TCTCGTTCGGCCAGAAAGATT 59.725 47.619 19.67 0.00 44.16 2.40
833 849 0.895530 ATCTCGTTCGGCCAGAAAGA 59.104 50.000 18.80 18.80 43.29 2.52
848 864 7.819900 AGGTTGAGCGGATATGTTTATAATCTC 59.180 37.037 0.00 0.00 0.00 2.75
867 883 4.330074 CCACATCGCTTAAGTAAGGTTGAG 59.670 45.833 4.02 0.00 33.95 3.02
918 937 2.989639 CCTGGCAATCGAGTCCCA 59.010 61.111 0.00 0.00 0.00 4.37
937 956 2.746412 TTCACTGGGCCACATGACGG 62.746 60.000 13.97 0.00 0.00 4.79
939 958 1.098050 GATTCACTGGGCCACATGAC 58.902 55.000 13.97 2.43 0.00 3.06
940 959 0.392863 CGATTCACTGGGCCACATGA 60.393 55.000 0.00 6.92 0.00 3.07
941 960 1.378882 CCGATTCACTGGGCCACATG 61.379 60.000 0.00 4.09 0.00 3.21
942 961 1.077501 CCGATTCACTGGGCCACAT 60.078 57.895 0.00 0.00 0.00 3.21
943 962 2.350895 CCGATTCACTGGGCCACA 59.649 61.111 0.00 0.00 0.00 4.17
944 963 2.438434 CCCGATTCACTGGGCCAC 60.438 66.667 0.00 0.00 38.90 5.01
1034 6636 1.142748 GAGCAGTGCGCATCTAGGT 59.857 57.895 15.91 9.68 46.13 3.08
1060 6667 1.152312 ACTGGTTCCACTCTCCGGT 60.152 57.895 0.00 0.00 36.19 5.28
1061 6668 1.592223 GACTGGTTCCACTCTCCGG 59.408 63.158 0.00 0.00 0.00 5.14
1094 6709 2.846193 TGAATTTATAGCACGGGGAGC 58.154 47.619 0.00 0.00 0.00 4.70
1126 6741 1.066071 GTAAAGGAGTGAGGAGTGGCC 60.066 57.143 0.00 0.00 0.00 5.36
1127 6742 1.066071 GGTAAAGGAGTGAGGAGTGGC 60.066 57.143 0.00 0.00 0.00 5.01
1143 6761 1.278985 CAGCAGTGTGGATGAGGGTAA 59.721 52.381 0.00 0.00 0.00 2.85
1145 6763 1.681666 CAGCAGTGTGGATGAGGGT 59.318 57.895 0.00 0.00 0.00 4.34
1147 6765 1.002990 TGCAGCAGTGTGGATGAGG 60.003 57.895 0.00 0.00 0.00 3.86
1152 6770 0.107263 TCAAACTGCAGCAGTGTGGA 60.107 50.000 35.64 25.76 46.44 4.02
1163 6781 3.054878 CTGAGTTGCCATTTCAAACTGC 58.945 45.455 0.00 0.00 0.00 4.40
1164 6782 4.572985 TCTGAGTTGCCATTTCAAACTG 57.427 40.909 0.00 0.00 0.00 3.16
1481 7149 2.494471 ACATGCACATGGACCAAATCAG 59.506 45.455 14.73 0.00 42.91 2.90
1816 7562 5.052481 ACATACACATACGTAGCGAGTAGA 58.948 41.667 0.08 0.00 0.00 2.59
1820 7566 4.205323 TGACATACACATACGTAGCGAG 57.795 45.455 0.08 0.00 0.00 5.03
1844 7604 7.477144 TCACAAAAATATATACGGCTGTCAG 57.523 36.000 0.00 0.00 0.00 3.51
1857 7617 8.134895 CACGGCAAACCTATATCACAAAAATAT 58.865 33.333 0.00 0.00 0.00 1.28
1865 7625 3.746492 GGATCACGGCAAACCTATATCAC 59.254 47.826 0.00 0.00 0.00 3.06
2083 7970 0.748005 AGCTGAGCACCGTGTTGTTT 60.748 50.000 7.39 0.00 0.00 2.83
2220 8107 2.561187 TGAGGATTTGGGTGATGAGGA 58.439 47.619 0.00 0.00 0.00 3.71
2275 8165 1.066716 ACGGGTGCAGCGAAGTAATTA 60.067 47.619 10.24 0.00 0.00 1.40
2284 8174 4.155733 TATGGGACGGGTGCAGCG 62.156 66.667 10.24 7.96 0.00 5.18
2294 8184 0.738389 CAACGGGCAATGTATGGGAC 59.262 55.000 0.00 0.00 0.00 4.46
2305 8195 0.309302 CGACAAAATGACAACGGGCA 59.691 50.000 0.00 0.00 0.00 5.36
2306 8196 0.589223 TCGACAAAATGACAACGGGC 59.411 50.000 0.00 0.00 0.00 6.13
2307 8197 1.399727 GCTCGACAAAATGACAACGGG 60.400 52.381 0.00 0.00 0.00 5.28
2308 8198 1.262950 TGCTCGACAAAATGACAACGG 59.737 47.619 0.00 0.00 0.00 4.44
2309 8199 2.032894 AGTGCTCGACAAAATGACAACG 60.033 45.455 0.00 0.00 0.00 4.10
2310 8200 3.609103 AGTGCTCGACAAAATGACAAC 57.391 42.857 0.00 0.00 0.00 3.32
2320 8293 1.299850 CCGTGTCAAGTGCTCGACA 60.300 57.895 0.00 0.00 39.77 4.35
2343 8329 2.436646 CCCTGCACGTCCATGGAC 60.437 66.667 31.59 31.59 41.40 4.02
2346 8332 2.034066 AACCCCTGCACGTCCATG 59.966 61.111 0.00 0.00 0.00 3.66
2349 8335 4.309950 ACGAACCCCTGCACGTCC 62.310 66.667 0.00 0.00 33.80 4.79
2350 8336 2.781595 ATCACGAACCCCTGCACGTC 62.782 60.000 0.00 0.00 36.86 4.34
2598 8596 2.528127 TCGGGCAAGGGGTTCTCA 60.528 61.111 0.00 0.00 0.00 3.27
2709 8707 1.581447 CTTGCCGTCTTTCTTGCCC 59.419 57.895 0.00 0.00 0.00 5.36
2750 8748 1.148759 GACGAGGATCTTCTTGGCGC 61.149 60.000 0.00 0.00 29.60 6.53
2832 8830 2.027625 GAAGTCGTTGCCGGACTGG 61.028 63.158 5.05 0.00 42.50 4.00
2870 8872 4.215201 GAGATACGATGTGTGACGAGATG 58.785 47.826 0.00 0.00 0.00 2.90
2886 8908 5.637810 TCAACAAGAACGGTTCATGAGATAC 59.362 40.000 27.06 0.00 32.98 2.24
2887 8909 5.789521 TCAACAAGAACGGTTCATGAGATA 58.210 37.500 27.06 10.62 32.98 1.98
2888 8910 4.641396 TCAACAAGAACGGTTCATGAGAT 58.359 39.130 27.06 13.15 32.98 2.75
2889 8911 4.066646 TCAACAAGAACGGTTCATGAGA 57.933 40.909 27.06 20.87 32.98 3.27
2890 8912 4.214119 ACATCAACAAGAACGGTTCATGAG 59.786 41.667 27.06 19.37 31.52 2.90
2892 8914 4.466828 GACATCAACAAGAACGGTTCATG 58.533 43.478 21.86 21.31 33.59 3.07
2893 8915 3.186409 CGACATCAACAAGAACGGTTCAT 59.814 43.478 21.86 8.24 0.00 2.57
2895 8917 2.798283 TCGACATCAACAAGAACGGTTC 59.202 45.455 12.91 12.91 0.00 3.62
2897 8919 2.519377 TCGACATCAACAAGAACGGT 57.481 45.000 0.00 0.00 0.00 4.83
2899 8921 3.306166 GGGTATCGACATCAACAAGAACG 59.694 47.826 0.00 0.00 0.00 3.95
2902 8924 4.081142 ACATGGGTATCGACATCAACAAGA 60.081 41.667 0.00 0.00 0.00 3.02
2904 8926 4.214986 ACATGGGTATCGACATCAACAA 57.785 40.909 0.00 0.00 0.00 2.83
2905 8927 3.904800 ACATGGGTATCGACATCAACA 57.095 42.857 0.00 0.00 0.00 3.33
2906 8928 4.188462 TCAACATGGGTATCGACATCAAC 58.812 43.478 0.00 0.00 0.00 3.18
2907 8929 4.479786 TCAACATGGGTATCGACATCAA 57.520 40.909 0.00 0.00 0.00 2.57
2908 8930 4.379652 CATCAACATGGGTATCGACATCA 58.620 43.478 0.00 0.00 0.00 3.07
2912 8934 2.838736 AGCATCAACATGGGTATCGAC 58.161 47.619 0.00 0.00 0.00 4.20
2913 8935 3.558931 AAGCATCAACATGGGTATCGA 57.441 42.857 0.00 0.00 0.00 3.59
2914 8936 4.378770 GCATAAGCATCAACATGGGTATCG 60.379 45.833 0.00 0.00 41.58 2.92
2915 8937 5.051891 GCATAAGCATCAACATGGGTATC 57.948 43.478 0.00 0.00 41.58 2.24
2936 8965 2.567564 GATGGTGGTGCCTGCAATGC 62.568 60.000 0.00 0.00 38.35 3.56
2937 8966 1.514087 GATGGTGGTGCCTGCAATG 59.486 57.895 0.00 0.00 38.35 2.82
2970 9295 1.079127 CTTCTTGTCCACGGCCGAT 60.079 57.895 35.90 13.97 0.00 4.18
3040 9365 0.654683 GCGTAGTCGTAGTCGTCCAT 59.345 55.000 0.00 0.00 39.49 3.41
3205 9530 2.478890 CCAGGTACGGCTCGACGAT 61.479 63.158 0.00 0.00 37.61 3.73
3342 9667 4.101448 ATGGGCAGCTGGTCGACC 62.101 66.667 28.17 28.17 0.00 4.79
3450 9775 4.816925 ACACTAGAGCAGGAAAAGACAAAC 59.183 41.667 0.00 0.00 0.00 2.93
3452 9777 4.100963 TCACACTAGAGCAGGAAAAGACAA 59.899 41.667 0.00 0.00 0.00 3.18
3453 9778 3.641436 TCACACTAGAGCAGGAAAAGACA 59.359 43.478 0.00 0.00 0.00 3.41
3456 9781 4.527509 TCTCACACTAGAGCAGGAAAAG 57.472 45.455 0.00 0.00 35.59 2.27
3464 9792 8.410141 ACTCACTAATTAATCTCACACTAGAGC 58.590 37.037 0.00 0.00 35.59 4.09
3466 9794 8.904834 GGACTCACTAATTAATCTCACACTAGA 58.095 37.037 0.00 0.00 0.00 2.43
3475 9803 6.777213 ACTCACGGACTCACTAATTAATCT 57.223 37.500 0.00 0.00 0.00 2.40
3476 9804 7.644551 CACTACTCACGGACTCACTAATTAATC 59.355 40.741 0.00 0.00 0.00 1.75
3517 9845 3.645053 ACCATATCCACCTCTCCTCAT 57.355 47.619 0.00 0.00 0.00 2.90
3518 9846 3.421394 AACCATATCCACCTCTCCTCA 57.579 47.619 0.00 0.00 0.00 3.86
3519 9847 4.164221 TCAAAACCATATCCACCTCTCCTC 59.836 45.833 0.00 0.00 0.00 3.71
3520 9848 4.111577 TCAAAACCATATCCACCTCTCCT 58.888 43.478 0.00 0.00 0.00 3.69
3521 9849 4.503714 TCAAAACCATATCCACCTCTCC 57.496 45.455 0.00 0.00 0.00 3.71
3522 9850 4.823989 CCATCAAAACCATATCCACCTCTC 59.176 45.833 0.00 0.00 0.00 3.20
3523 9851 4.796606 CCATCAAAACCATATCCACCTCT 58.203 43.478 0.00 0.00 0.00 3.69
3524 9852 3.319122 GCCATCAAAACCATATCCACCTC 59.681 47.826 0.00 0.00 0.00 3.85
3525 9853 3.299503 GCCATCAAAACCATATCCACCT 58.700 45.455 0.00 0.00 0.00 4.00
3526 9854 2.034558 CGCCATCAAAACCATATCCACC 59.965 50.000 0.00 0.00 0.00 4.61
3527 9855 2.687935 ACGCCATCAAAACCATATCCAC 59.312 45.455 0.00 0.00 0.00 4.02
3528 9856 2.948979 GACGCCATCAAAACCATATCCA 59.051 45.455 0.00 0.00 0.00 3.41
3529 9857 2.032030 CGACGCCATCAAAACCATATCC 60.032 50.000 0.00 0.00 0.00 2.59
3530 9858 2.602217 GCGACGCCATCAAAACCATATC 60.602 50.000 9.14 0.00 0.00 1.63
3531 9859 1.333619 GCGACGCCATCAAAACCATAT 59.666 47.619 9.14 0.00 0.00 1.78
3532 9860 0.730265 GCGACGCCATCAAAACCATA 59.270 50.000 9.14 0.00 0.00 2.74
3566 9894 3.490800 TCATCGGATGTTCGTAACGAA 57.509 42.857 17.01 0.00 43.75 3.85
3568 9896 3.176708 AGTTCATCGGATGTTCGTAACG 58.823 45.455 17.01 0.00 0.00 3.18
3570 9898 4.811908 TCAAGTTCATCGGATGTTCGTAA 58.188 39.130 17.01 1.75 0.00 3.18
3571 9899 4.443913 TCAAGTTCATCGGATGTTCGTA 57.556 40.909 17.01 0.00 0.00 3.43
3572 9900 3.313012 TCAAGTTCATCGGATGTTCGT 57.687 42.857 17.01 7.58 0.00 3.85
3573 9901 4.661993 TTTCAAGTTCATCGGATGTTCG 57.338 40.909 17.01 4.13 0.00 3.95
3574 9902 6.182039 TGATTTCAAGTTCATCGGATGTTC 57.818 37.500 17.01 11.28 0.00 3.18
3575 9903 6.573664 TTGATTTCAAGTTCATCGGATGTT 57.426 33.333 17.01 2.46 0.00 2.71
3576 9904 6.600822 AGATTGATTTCAAGTTCATCGGATGT 59.399 34.615 17.01 0.00 39.47 3.06
3577 9905 7.024340 AGATTGATTTCAAGTTCATCGGATG 57.976 36.000 11.79 11.79 39.47 3.51
3578 9906 8.915057 ATAGATTGATTTCAAGTTCATCGGAT 57.085 30.769 0.00 0.00 39.47 4.18
3665 9993 1.347707 ACCTTTGAATGAGAGTCCGCA 59.652 47.619 0.00 0.00 0.00 5.69
3666 9994 1.734465 CACCTTTGAATGAGAGTCCGC 59.266 52.381 0.00 0.00 0.00 5.54
3667 9995 2.996621 GTCACCTTTGAATGAGAGTCCG 59.003 50.000 0.00 0.00 31.90 4.79
3668 9996 3.008485 AGGTCACCTTTGAATGAGAGTCC 59.992 47.826 0.00 0.00 31.90 3.85
3669 9997 4.278975 AGGTCACCTTTGAATGAGAGTC 57.721 45.455 0.00 0.00 31.90 3.36
3678 10006 3.874383 TGATTGGAAGGTCACCTTTGA 57.126 42.857 11.44 0.00 44.82 2.69
3681 10009 3.259123 GCAAATGATTGGAAGGTCACCTT 59.741 43.478 9.55 9.55 40.70 3.50
3685 10013 4.283978 ACAATGCAAATGATTGGAAGGTCA 59.716 37.500 9.59 0.00 40.47 4.02
3728 10056 7.494625 GTCACTAAATCTCGTTAAATCCCATCA 59.505 37.037 0.00 0.00 0.00 3.07
3729 10057 7.494625 TGTCACTAAATCTCGTTAAATCCCATC 59.505 37.037 0.00 0.00 0.00 3.51
3730 10058 7.335627 TGTCACTAAATCTCGTTAAATCCCAT 58.664 34.615 0.00 0.00 0.00 4.00
3731 10059 6.703319 TGTCACTAAATCTCGTTAAATCCCA 58.297 36.000 0.00 0.00 0.00 4.37
3732 10060 7.201617 CCTTGTCACTAAATCTCGTTAAATCCC 60.202 40.741 0.00 0.00 0.00 3.85
3733 10061 7.548075 TCCTTGTCACTAAATCTCGTTAAATCC 59.452 37.037 0.00 0.00 0.00 3.01
3734 10062 8.475331 TCCTTGTCACTAAATCTCGTTAAATC 57.525 34.615 0.00 0.00 0.00 2.17
3735 10063 8.842358 TTCCTTGTCACTAAATCTCGTTAAAT 57.158 30.769 0.00 0.00 0.00 1.40
3737 10065 7.274904 CGATTCCTTGTCACTAAATCTCGTTAA 59.725 37.037 0.00 0.00 0.00 2.01
3738 10066 6.750501 CGATTCCTTGTCACTAAATCTCGTTA 59.249 38.462 0.00 0.00 0.00 3.18
3739 10067 5.577164 CGATTCCTTGTCACTAAATCTCGTT 59.423 40.000 0.00 0.00 0.00 3.85
3742 10146 5.220491 GCACGATTCCTTGTCACTAAATCTC 60.220 44.000 0.00 0.00 0.00 2.75
3744 10148 4.391830 TGCACGATTCCTTGTCACTAAATC 59.608 41.667 0.00 0.00 0.00 2.17
3748 10152 2.036604 TGTGCACGATTCCTTGTCACTA 59.963 45.455 13.13 0.00 0.00 2.74
3765 10169 1.532007 TCGTTAAACCGGTCATTGTGC 59.468 47.619 8.04 0.00 0.00 4.57
3767 10171 3.389925 TCTCGTTAAACCGGTCATTGT 57.610 42.857 8.04 0.00 0.00 2.71
3770 10174 4.181578 CTGAATCTCGTTAAACCGGTCAT 58.818 43.478 8.04 2.07 0.00 3.06
3775 10179 4.482386 TCTGACTGAATCTCGTTAAACCG 58.518 43.478 0.00 0.00 0.00 4.44
3806 10216 4.047822 CACGCTGCAATAGGTTTCAAAAA 58.952 39.130 0.00 0.00 0.00 1.94
3810 10220 1.164411 CCACGCTGCAATAGGTTTCA 58.836 50.000 0.00 0.00 0.00 2.69
3825 10235 1.074248 AACCCCAAACCTAGCCACG 59.926 57.895 0.00 0.00 0.00 4.94
3858 10268 7.781324 ATGACAAATTGAGACCCAAAACTAT 57.219 32.000 0.00 0.00 38.43 2.12
3859 10269 7.595819 AATGACAAATTGAGACCCAAAACTA 57.404 32.000 0.00 0.00 38.43 2.24
3891 10301 0.525455 TCGATCGTCGGCATGTCTTG 60.525 55.000 15.94 0.00 40.88 3.02
3902 10312 3.372822 TGGCCAAACTAAATTCGATCGTC 59.627 43.478 15.94 0.00 0.00 4.20
3904 10314 3.621268 TCTGGCCAAACTAAATTCGATCG 59.379 43.478 7.01 9.36 0.00 3.69
3908 10318 3.081804 ACCTCTGGCCAAACTAAATTCG 58.918 45.455 7.01 0.00 0.00 3.34
3910 10320 3.431415 GGACCTCTGGCCAAACTAAATT 58.569 45.455 7.01 0.00 0.00 1.82
3948 10358 4.190001 CCACTCCATCAACATCTCTGAAG 58.810 47.826 0.00 0.00 0.00 3.02
3965 10375 0.320697 AAACCCTACTCACGCCACTC 59.679 55.000 0.00 0.00 0.00 3.51
3968 10378 0.981183 ATCAAACCCTACTCACGCCA 59.019 50.000 0.00 0.00 0.00 5.69
3977 10387 6.126863 AGAAATGAGTGACATCAAACCCTA 57.873 37.500 0.00 0.00 38.38 3.53
4034 10450 0.253044 TTTGCAGGAGGAAGGATCGG 59.747 55.000 0.00 0.00 0.00 4.18
4083 10547 8.098220 AGGGAAACAAAATTGTGATTTTATGC 57.902 30.769 1.62 0.00 42.14 3.14
4117 11158 8.324163 ACAGTTATCTTTTATGCGTTTCTCTT 57.676 30.769 0.00 0.00 0.00 2.85
4118 11159 7.907214 ACAGTTATCTTTTATGCGTTTCTCT 57.093 32.000 0.00 0.00 0.00 3.10
4119 11160 8.114905 GGTACAGTTATCTTTTATGCGTTTCTC 58.885 37.037 0.00 0.00 0.00 2.87
4120 11161 7.065443 GGGTACAGTTATCTTTTATGCGTTTCT 59.935 37.037 0.00 0.00 0.00 2.52
4122 11172 6.094464 GGGGTACAGTTATCTTTTATGCGTTT 59.906 38.462 0.00 0.00 0.00 3.60
4126 11176 6.998673 AGATGGGGTACAGTTATCTTTTATGC 59.001 38.462 0.00 0.00 0.00 3.14
4137 11187 2.708861 TGTGACAAGATGGGGTACAGTT 59.291 45.455 0.00 0.00 0.00 3.16
4139 11189 3.535561 GATGTGACAAGATGGGGTACAG 58.464 50.000 0.00 0.00 0.00 2.74
4144 11194 0.541392 TCGGATGTGACAAGATGGGG 59.459 55.000 0.00 0.00 0.00 4.96
4147 11197 3.308053 GTGACATCGGATGTGACAAGATG 59.692 47.826 28.18 19.87 45.07 2.90
4148 11198 3.525537 GTGACATCGGATGTGACAAGAT 58.474 45.455 28.18 4.74 45.07 2.40
4149 11199 2.959516 GTGACATCGGATGTGACAAGA 58.040 47.619 28.18 5.87 45.07 3.02
4153 11203 0.537188 AGGGTGACATCGGATGTGAC 59.463 55.000 27.11 26.58 45.00 3.67
4154 11204 0.536724 CAGGGTGACATCGGATGTGA 59.463 55.000 27.11 17.15 45.03 3.58
4155 11205 1.091771 GCAGGGTGACATCGGATGTG 61.092 60.000 27.11 13.04 45.03 3.21
4157 11207 0.107508 AAGCAGGGTGACATCGGATG 60.108 55.000 16.20 16.20 0.00 3.51
4158 11208 0.620556 AAAGCAGGGTGACATCGGAT 59.379 50.000 0.00 0.00 0.00 4.18
4159 11209 0.036388 GAAAGCAGGGTGACATCGGA 60.036 55.000 0.00 0.00 0.00 4.55
4160 11210 0.036010 AGAAAGCAGGGTGACATCGG 60.036 55.000 0.00 0.00 0.00 4.18
4163 11213 4.892934 TGTTAAAAGAAAGCAGGGTGACAT 59.107 37.500 0.00 0.00 0.00 3.06
4169 11219 9.657419 ATTGATATTTGTTAAAAGAAAGCAGGG 57.343 29.630 0.00 0.00 0.00 4.45
4205 11255 9.883142 TTGTTTTCTTGGACTAAAATCACATTT 57.117 25.926 0.00 0.00 0.00 2.32
4207 11257 9.883142 TTTTGTTTTCTTGGACTAAAATCACAT 57.117 25.926 0.00 0.00 0.00 3.21
4208 11258 9.883142 ATTTTGTTTTCTTGGACTAAAATCACA 57.117 25.926 0.00 0.00 0.00 3.58
4234 11284 6.723298 TTCCCTTTTGTTTTCTTAGATGCA 57.277 33.333 0.00 0.00 0.00 3.96
4235 11285 6.983890 TGTTTCCCTTTTGTTTTCTTAGATGC 59.016 34.615 0.00 0.00 0.00 3.91
4236 11286 9.546428 AATGTTTCCCTTTTGTTTTCTTAGATG 57.454 29.630 0.00 0.00 0.00 2.90
4252 11303 5.742838 GCTGGTTGATTTGAAATGTTTCCCT 60.743 40.000 0.00 0.00 36.36 4.20
4260 11311 1.066929 GCCGGCTGGTTGATTTGAAAT 60.067 47.619 22.15 0.00 37.67 2.17
4296 11347 3.446310 TGGAATAATAAGCGAGCACGA 57.554 42.857 8.01 0.00 42.66 4.35
4299 11350 3.527533 ACGTTGGAATAATAAGCGAGCA 58.472 40.909 0.00 0.00 0.00 4.26
4391 11442 0.174162 GCCATCAACAATGTGAGGCC 59.826 55.000 0.00 0.00 36.56 5.19
4392 11443 0.179156 CGCCATCAACAATGTGAGGC 60.179 55.000 8.09 8.09 37.93 4.70
4393 11444 1.452110 TCGCCATCAACAATGTGAGG 58.548 50.000 0.00 0.00 33.13 3.86
4394 11445 2.223409 CCATCGCCATCAACAATGTGAG 60.223 50.000 0.00 0.00 33.13 3.51
4395 11446 1.744522 CCATCGCCATCAACAATGTGA 59.255 47.619 0.00 0.00 33.13 3.58
4396 11447 1.473677 ACCATCGCCATCAACAATGTG 59.526 47.619 0.00 0.00 33.13 3.21
4397 11448 1.473677 CACCATCGCCATCAACAATGT 59.526 47.619 0.00 0.00 33.13 2.71
4398 11449 1.202325 CCACCATCGCCATCAACAATG 60.202 52.381 0.00 0.00 34.93 2.82
4399 11450 1.105457 CCACCATCGCCATCAACAAT 58.895 50.000 0.00 0.00 0.00 2.71
4400 11451 1.594194 GCCACCATCGCCATCAACAA 61.594 55.000 0.00 0.00 0.00 2.83
4401 11452 2.045708 GCCACCATCGCCATCAACA 61.046 57.895 0.00 0.00 0.00 3.33
4402 11453 2.774799 GGCCACCATCGCCATCAAC 61.775 63.158 0.00 0.00 46.27 3.18
4403 11454 2.440065 GGCCACCATCGCCATCAA 60.440 61.111 0.00 0.00 46.27 2.57
4412 11463 6.671053 ACAAGGATGTTATTGGGCCACCAT 62.671 45.833 5.23 6.28 41.39 3.55
4413 11464 5.428888 ACAAGGATGTTATTGGGCCACCA 62.429 47.826 5.23 0.53 40.44 4.17
4414 11465 1.756538 CAAGGATGTTATTGGGCCACC 59.243 52.381 5.23 1.40 37.24 4.61
4415 11466 2.456577 ACAAGGATGTTATTGGGCCAC 58.543 47.619 5.23 0.00 35.91 5.01
4416 11467 2.917713 ACAAGGATGTTATTGGGCCA 57.082 45.000 0.00 0.00 35.91 5.36
4417 11468 3.383505 GGTTACAAGGATGTTATTGGGCC 59.616 47.826 0.00 0.00 41.05 5.80
4418 11469 3.383505 GGGTTACAAGGATGTTATTGGGC 59.616 47.826 0.00 0.00 41.05 5.36
4419 11470 3.958147 GGGGTTACAAGGATGTTATTGGG 59.042 47.826 0.00 0.00 41.05 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.