Multiple sequence alignment - TraesCS5A01G387500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G387500 chr5A 100.000 6195 0 0 1 6195 584619475 584613281 0.000000e+00 11441
1 TraesCS5A01G387500 chr5A 92.930 3140 174 30 1840 4959 43538898 43542009 0.000000e+00 4525
2 TraesCS5A01G387500 chr5A 99.280 2501 16 2 1750 4249 584577171 584574672 0.000000e+00 4518
3 TraesCS5A01G387500 chr5A 88.462 598 51 8 4959 5553 43542142 43542724 0.000000e+00 706
4 TraesCS5A01G387500 chr5A 83.596 634 55 32 735 1337 43533269 43533884 3.260000e-152 549
5 TraesCS5A01G387500 chr5A 84.459 592 32 27 905 1473 43535829 43536383 4.250000e-146 529
6 TraesCS5A01G387500 chr5A 84.095 591 45 29 776 1337 43532184 43532754 5.500000e-145 525
7 TraesCS5A01G387500 chr5A 83.393 560 42 30 144 685 43533882 43534408 7.270000e-129 472
8 TraesCS5A01G387500 chr5A 81.541 558 47 32 144 685 43532752 43533269 5.780000e-110 409
9 TraesCS5A01G387500 chr5A 88.194 288 26 8 5766 6051 43543643 43543924 2.770000e-88 337
10 TraesCS5A01G387500 chr5A 89.080 174 16 2 1586 1759 43536390 43536560 4.860000e-51 213
11 TraesCS5A01G387500 chr5A 98.780 82 1 0 5924 6005 584520910 584520829 5.000000e-31 147
12 TraesCS5A01G387500 chr5B 91.909 3399 207 41 1586 4959 57700351 57703706 0.000000e+00 4691
13 TraesCS5A01G387500 chr5B 93.423 2372 129 15 1840 4198 571234891 571232534 0.000000e+00 3491
14 TraesCS5A01G387500 chr5B 86.212 1436 95 42 413 1797 571236287 571234904 0.000000e+00 1459
15 TraesCS5A01G387500 chr5B 90.064 785 56 16 4192 4961 571232424 571231647 0.000000e+00 998
16 TraesCS5A01G387500 chr5B 88.462 598 50 8 4959 5553 57703837 57704418 0.000000e+00 704
17 TraesCS5A01G387500 chr5B 87.752 596 54 9 4961 5553 571231520 571230941 0.000000e+00 678
18 TraesCS5A01G387500 chr5B 84.838 587 29 29 905 1473 57699800 57700344 2.540000e-148 536
19 TraesCS5A01G387500 chr5B 91.193 352 22 8 5661 6006 57704509 57704857 2.610000e-128 470
20 TraesCS5A01G387500 chr5B 80.000 350 35 19 5690 6009 571230827 571230483 6.250000e-55 226
21 TraesCS5A01G387500 chr5B 82.707 266 23 14 122 384 571238206 571237961 1.350000e-51 215
22 TraesCS5A01G387500 chr5B 97.727 88 2 0 5925 6012 571190405 571190318 1.080000e-32 152
23 TraesCS5A01G387500 chr5B 97.500 80 2 0 5550 5629 571230903 571230824 3.010000e-28 137
24 TraesCS5A01G387500 chr5D 91.536 3438 234 30 1557 4961 464133247 464129834 0.000000e+00 4684
25 TraesCS5A01G387500 chr5D 90.985 599 46 6 4959 5553 464129646 464129052 0.000000e+00 800
26 TraesCS5A01G387500 chr5D 84.423 719 61 19 13 725 464135499 464134826 0.000000e+00 660
27 TraesCS5A01G387500 chr5D 85.997 657 43 21 763 1412 464133993 464133379 0.000000e+00 658
28 TraesCS5A01G387500 chr5D 83.333 492 39 21 5555 6009 464128958 464128473 1.240000e-111 414
29 TraesCS5A01G387500 chrUn 95.285 403 18 1 2432 2834 478497178 478496777 6.770000e-179 638
30 TraesCS5A01G387500 chr1B 94.175 103 4 2 5904 6006 603214297 603214197 8.310000e-34 156
31 TraesCS5A01G387500 chr7B 96.552 87 1 2 5931 6016 600826972 600826887 6.470000e-30 143
32 TraesCS5A01G387500 chr7B 96.512 86 0 3 5933 6017 600834263 600834180 8.370000e-29 139


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G387500 chr5A 584613281 584619475 6194 True 11441.000000 11441 100.000000 1 6195 1 chr5A.!!$R3 6194
1 TraesCS5A01G387500 chr5A 584574672 584577171 2499 True 4518.000000 4518 99.280000 1750 4249 1 chr5A.!!$R2 2499
2 TraesCS5A01G387500 chr5A 43532184 43543924 11740 False 918.333333 4525 86.194444 144 6051 9 chr5A.!!$F1 5907
3 TraesCS5A01G387500 chr5B 57699800 57704857 5057 False 1600.250000 4691 89.100500 905 6006 4 chr5B.!!$F1 5101
4 TraesCS5A01G387500 chr5B 571230483 571238206 7723 True 1029.142857 3491 88.236857 122 6009 7 chr5B.!!$R2 5887
5 TraesCS5A01G387500 chr5D 464128473 464135499 7026 True 1443.200000 4684 87.254800 13 6009 5 chr5D.!!$R1 5996

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 3632 0.035056 AGCTTCGTCCCCCAAATCTG 60.035 55.000 0.00 0.0 0.00 2.90 F
721 3977 0.036732 TCCACTCTTGCTGCCGATTT 59.963 50.000 0.00 0.0 0.00 2.17 F
1372 6732 0.396435 AGATTGTGGAACGGTGAGCA 59.604 50.000 0.00 0.0 42.39 4.26 F
1723 7125 0.095245 CAAAGTGTACGGCGATGCTG 59.905 55.000 16.62 0.0 41.29 4.41 F
4256 12065 2.031012 CTCTTGCTGTGGCCGTCA 59.969 61.111 0.00 0.0 37.74 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1355 6714 0.606401 CCTGCTCACCGTTCCACAAT 60.606 55.000 0.00 0.00 0.00 2.71 R
1595 6985 2.375174 TGGCTATTTGGTGTGGAACTCT 59.625 45.455 0.00 0.00 38.04 3.24 R
3184 10867 9.665264 CAATTTCAGACAAAAGGAAGTACTAAC 57.335 33.333 0.00 0.00 0.00 2.34 R
4274 12083 4.699735 TCCACCTGTTAGCATAAACATGTG 59.300 41.667 18.98 18.98 46.66 3.21 R
6102 14907 0.038526 AAGGACCGTCGTGTGATGTC 60.039 55.000 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 0.103572 GGAATAACACCGAGCGCCTA 59.896 55.000 2.29 0.00 0.00 3.93
39 40 1.488527 GAATAACACCGAGCGCCTAG 58.511 55.000 2.29 0.00 0.00 3.02
84 85 1.094073 GCATCAAGATCTGTGCGGCT 61.094 55.000 10.94 0.00 0.00 5.52
111 112 0.229753 CGATAGTCAATGCGTTCGGC 59.770 55.000 0.00 0.00 43.96 5.54
120 121 4.162690 GCGTTCGGCAGGGATCCT 62.163 66.667 12.58 0.00 42.87 3.24
121 122 2.584608 CGTTCGGCAGGGATCCTT 59.415 61.111 12.58 0.00 0.00 3.36
122 123 1.078426 CGTTCGGCAGGGATCCTTT 60.078 57.895 12.58 0.00 0.00 3.11
124 125 1.406341 CGTTCGGCAGGGATCCTTTAA 60.406 52.381 12.58 0.00 0.00 1.52
137 138 5.714806 GGGATCCTTTAAAACCTGATGTTCA 59.285 40.000 12.58 0.00 35.67 3.18
161 587 9.798994 TCAGAGTTTATCTTTCCGTAGTTATTC 57.201 33.333 0.00 0.00 35.47 1.75
183 609 1.079543 CTCTCCCCAACTGTGCTCG 60.080 63.158 0.00 0.00 0.00 5.03
249 717 1.224075 CATGGCTCATAGGCTCGTTG 58.776 55.000 0.00 0.00 41.96 4.10
250 718 0.533755 ATGGCTCATAGGCTCGTTGC 60.534 55.000 0.00 0.00 41.96 4.17
291 1856 1.068250 GCTCATGGGCTCGTACTCC 59.932 63.158 11.30 0.00 0.00 3.85
294 1859 0.613572 TCATGGGCTCGTACTCCACA 60.614 55.000 0.00 0.00 32.90 4.17
298 1863 0.606604 GGGCTCGTACTCCACAAAGA 59.393 55.000 0.00 0.00 0.00 2.52
303 1868 2.224606 TCGTACTCCACAAAGAGACGT 58.775 47.619 0.00 0.00 37.98 4.34
311 1876 0.387929 ACAAAGAGACGTTCGCAGGA 59.612 50.000 0.00 0.00 0.00 3.86
334 1899 1.167851 CATGCACGAGTTTGACCCAT 58.832 50.000 0.00 0.00 0.00 4.00
336 1901 1.210155 GCACGAGTTTGACCCATGC 59.790 57.895 0.00 0.00 0.00 4.06
363 1929 0.322546 CTGAGCCCAACCCACCTAAC 60.323 60.000 0.00 0.00 0.00 2.34
397 3628 0.037160 GGTTAGCTTCGTCCCCCAAA 59.963 55.000 0.00 0.00 0.00 3.28
401 3632 0.035056 AGCTTCGTCCCCCAAATCTG 60.035 55.000 0.00 0.00 0.00 2.90
404 3635 0.036765 TTCGTCCCCCAAATCTGTCG 60.037 55.000 0.00 0.00 0.00 4.35
405 3636 0.901114 TCGTCCCCCAAATCTGTCGA 60.901 55.000 0.00 0.00 0.00 4.20
406 3637 0.460284 CGTCCCCCAAATCTGTCGAG 60.460 60.000 0.00 0.00 0.00 4.04
407 3638 0.744771 GTCCCCCAAATCTGTCGAGC 60.745 60.000 0.00 0.00 0.00 5.03
408 3639 1.815421 CCCCCAAATCTGTCGAGCG 60.815 63.158 0.00 0.00 0.00 5.03
409 3640 2.464459 CCCCAAATCTGTCGAGCGC 61.464 63.158 0.00 0.00 0.00 5.92
410 3641 2.464459 CCCAAATCTGTCGAGCGCC 61.464 63.158 2.29 0.00 0.00 6.53
411 3642 2.697425 CAAATCTGTCGAGCGCCG 59.303 61.111 2.29 8.02 40.25 6.46
412 3643 3.188786 AAATCTGTCGAGCGCCGC 61.189 61.111 2.29 0.00 38.37 6.53
483 3724 4.544689 CTCTCCGGCGACTGAGCG 62.545 72.222 9.30 0.00 41.06 5.03
513 3755 1.387492 GCCCCCTATTCCTCCCCTT 60.387 63.158 0.00 0.00 0.00 3.95
516 3758 1.735926 CCCCTATTCCTCCCCTTCTC 58.264 60.000 0.00 0.00 0.00 2.87
543 3785 1.135731 CCAGTCAGCTCGTCGTCTC 59.864 63.158 0.00 0.00 0.00 3.36
580 3823 2.251642 GCACCAACGACACCCAGAC 61.252 63.158 0.00 0.00 0.00 3.51
650 3905 1.782201 ATCAGCCCCACAACAGCTCA 61.782 55.000 0.00 0.00 33.70 4.26
713 3969 0.175302 CAGATCGCTCCACTCTTGCT 59.825 55.000 0.00 0.00 0.00 3.91
715 3971 1.427592 GATCGCTCCACTCTTGCTGC 61.428 60.000 0.00 0.00 0.00 5.25
721 3977 0.036732 TCCACTCTTGCTGCCGATTT 59.963 50.000 0.00 0.00 0.00 2.17
742 4783 1.299468 CTGCAGGATACGCCTCGTC 60.299 63.158 5.57 0.00 46.97 4.20
753 4794 1.269448 ACGCCTCGTCATTTGCAAAAT 59.731 42.857 17.19 2.09 33.69 1.82
754 4795 1.650153 CGCCTCGTCATTTGCAAAATG 59.350 47.619 17.19 14.34 0.00 2.32
761 4812 1.704070 TCATTTGCAAAATGCCCCCTT 59.296 42.857 17.19 0.00 44.23 3.95
768 4819 3.156293 GCAAAATGCCCCCTTTTGATTT 58.844 40.909 11.53 0.00 43.18 2.17
770 4821 4.559099 GCAAAATGCCCCCTTTTGATTTTG 60.559 41.667 11.53 0.00 43.18 2.44
791 4842 5.298197 TGTCGAAACAAAGCTTTACAACA 57.702 34.783 12.25 7.94 30.70 3.33
792 4843 5.700846 TGTCGAAACAAAGCTTTACAACAA 58.299 33.333 12.25 0.00 30.70 2.83
948 6269 2.514824 GGCTCGGCCTCATTCCAC 60.515 66.667 0.00 0.00 46.69 4.02
949 6270 2.268920 GCTCGGCCTCATTCCACA 59.731 61.111 0.00 0.00 0.00 4.17
967 6291 1.072965 ACAACAGGAGGCCAAGAAGAG 59.927 52.381 5.01 0.00 0.00 2.85
1155 6506 1.322538 CGCCCCTTCTCCCCAAATTG 61.323 60.000 0.00 0.00 0.00 2.32
1158 6509 2.619931 CCCCTTCTCCCCAAATTGTTT 58.380 47.619 0.00 0.00 0.00 2.83
1161 6512 3.903714 CCCTTCTCCCCAAATTGTTTCTT 59.096 43.478 0.00 0.00 0.00 2.52
1162 6513 4.347876 CCCTTCTCCCCAAATTGTTTCTTT 59.652 41.667 0.00 0.00 0.00 2.52
1163 6514 5.163205 CCCTTCTCCCCAAATTGTTTCTTTT 60.163 40.000 0.00 0.00 0.00 2.27
1164 6515 6.356556 CCTTCTCCCCAAATTGTTTCTTTTT 58.643 36.000 0.00 0.00 0.00 1.94
1165 6516 6.483307 CCTTCTCCCCAAATTGTTTCTTTTTC 59.517 38.462 0.00 0.00 0.00 2.29
1166 6517 6.806668 TCTCCCCAAATTGTTTCTTTTTCT 57.193 33.333 0.00 0.00 0.00 2.52
1167 6518 6.581712 TCTCCCCAAATTGTTTCTTTTTCTG 58.418 36.000 0.00 0.00 0.00 3.02
1199 6550 2.561569 CTAGTATTTGGTTCTGGGGCG 58.438 52.381 0.00 0.00 0.00 6.13
1227 6579 4.394712 CCCGCCCTGCTCTTCGTT 62.395 66.667 0.00 0.00 0.00 3.85
1230 6582 2.359230 GCCCTGCTCTTCGTTGCT 60.359 61.111 0.00 0.00 0.00 3.91
1342 6701 6.036517 GCCATTTATCCTCGCAGTATTGATAG 59.963 42.308 0.00 0.00 0.00 2.08
1354 6713 8.775527 TCGCAGTATTGATAGTAAGAGTAGAAG 58.224 37.037 0.00 0.00 0.00 2.85
1355 6714 8.775527 CGCAGTATTGATAGTAAGAGTAGAAGA 58.224 37.037 0.00 0.00 0.00 2.87
1372 6732 0.396435 AGATTGTGGAACGGTGAGCA 59.604 50.000 0.00 0.00 42.39 4.26
1412 6772 5.191722 TCCTGCTGTTTGGTTATCTTAGGAT 59.808 40.000 0.00 0.00 36.07 3.24
1425 6785 9.372369 GGTTATCTTAGGATTAGGAATCGATTG 57.628 37.037 16.96 0.00 38.82 2.67
1477 6860 1.839994 CAGCCTGAAGGGGATTGAGTA 59.160 52.381 0.00 0.00 35.18 2.59
1492 6875 6.239887 GGGATTGAGTAGGATTATACAAGGCA 60.240 42.308 0.00 0.00 0.00 4.75
1495 6878 9.593134 GATTGAGTAGGATTATACAAGGCATAG 57.407 37.037 0.00 0.00 0.00 2.23
1499 6882 9.646427 GAGTAGGATTATACAAGGCATAGAAAG 57.354 37.037 0.00 0.00 0.00 2.62
1723 7125 0.095245 CAAAGTGTACGGCGATGCTG 59.905 55.000 16.62 0.00 41.29 4.41
1747 7149 5.653769 GAATGAGATCATTGGTTTCTCCCAA 59.346 40.000 12.62 0.00 45.72 4.12
2761 10440 2.630098 TCGAGATCTGGCCCTAATTGAG 59.370 50.000 0.00 0.00 0.00 3.02
3184 10867 8.727910 TCAGATCTTTGATCAGACATGAAAAAG 58.272 33.333 0.00 9.06 40.80 2.27
4253 12062 3.052082 CCACTCTTGCTGTGGCCG 61.052 66.667 0.00 0.00 46.73 6.13
4256 12065 2.031012 CTCTTGCTGTGGCCGTCA 59.969 61.111 0.00 0.00 37.74 4.35
4301 12110 2.561209 TATGCTAACAGGTGGAGGGA 57.439 50.000 0.00 0.00 0.00 4.20
4391 12200 8.527810 GTTAAGATGGGAAAATGTGAATACCAA 58.472 33.333 0.00 0.00 0.00 3.67
4423 12232 0.034089 ATGGCTTGCCCTTCAGGTAC 60.034 55.000 9.35 0.00 38.26 3.34
4445 12256 4.703575 ACTTCATTTATGACACTGCTGCAT 59.296 37.500 1.31 0.00 36.36 3.96
4449 12260 1.741528 TATGACACTGCTGCATGGTG 58.258 50.000 17.37 17.37 37.05 4.17
4450 12261 0.251033 ATGACACTGCTGCATGGTGT 60.251 50.000 22.65 22.65 45.26 4.16
4464 12275 6.515035 GCTGCATGGTGTCTTTTAGTAACTTT 60.515 38.462 0.00 0.00 0.00 2.66
4497 12308 6.296547 GCTGTAGGATCTAGATACCCTCTACA 60.297 46.154 14.68 17.72 35.28 2.74
4515 12326 6.428159 CCTCTACAATACACTGATTATTGCCC 59.572 42.308 10.75 0.00 39.57 5.36
4531 12342 1.518903 GCCCTGCAGGTTGTCTGAAC 61.519 60.000 30.63 5.27 46.18 3.18
4540 12351 1.460689 TTGTCTGAACGGGGGAGGT 60.461 57.895 0.00 0.00 0.00 3.85
4620 12431 6.079763 GTGTGTACATGCAAGATGTAAGTTG 58.920 40.000 0.00 0.00 36.40 3.16
4643 12454 5.525012 TGTAGCATGCTCACTACATTTCATC 59.475 40.000 26.57 0.00 42.82 2.92
4680 12494 5.107875 CCTTGCTTCTGTTTGCGATTTTAAC 60.108 40.000 0.00 0.00 0.00 2.01
4719 12533 6.096673 ACCCATTCAAGTTTTATGTCCAAC 57.903 37.500 0.00 0.00 0.00 3.77
4746 12560 4.942852 CTGCTATACTTCTGCAGCTTAGT 58.057 43.478 9.47 14.10 45.76 2.24
4755 12570 1.238439 TGCAGCTTAGTTGCAGGTTC 58.762 50.000 19.29 0.00 44.16 3.62
4765 12580 2.887152 AGTTGCAGGTTCTGTCCAATTC 59.113 45.455 0.00 0.00 33.43 2.17
4855 12679 5.978814 ACTCTTAGTGCCTATTACACCTTG 58.021 41.667 0.00 0.00 38.87 3.61
4871 12695 5.197451 ACACCTTGTCATTGTAGTTTTGGA 58.803 37.500 0.00 0.00 0.00 3.53
4873 12697 6.183360 ACACCTTGTCATTGTAGTTTTGGAAG 60.183 38.462 0.00 0.00 0.00 3.46
4906 12730 7.148407 CGTAATTTCTGAACTCACTAGCCATTT 60.148 37.037 0.00 0.00 0.00 2.32
4907 12731 5.947228 TTTCTGAACTCACTAGCCATTTG 57.053 39.130 0.00 0.00 0.00 2.32
4908 12732 3.942829 TCTGAACTCACTAGCCATTTGG 58.057 45.455 0.00 0.00 38.53 3.28
4909 12733 3.327757 TCTGAACTCACTAGCCATTTGGT 59.672 43.478 0.00 0.00 37.57 3.67
4910 12734 4.074970 CTGAACTCACTAGCCATTTGGTT 58.925 43.478 0.00 0.00 37.57 3.67
4911 12735 3.820467 TGAACTCACTAGCCATTTGGTTG 59.180 43.478 0.00 0.00 37.57 3.77
4944 12770 1.467734 CTGCTCCAGTTTGCTGACATC 59.532 52.381 0.00 0.00 45.28 3.06
4953 12779 5.755375 CCAGTTTGCTGACATCGTATATTCT 59.245 40.000 0.00 0.00 45.28 2.40
4968 12985 7.952671 TCGTATATTCTCCTTAATCTTGCTGT 58.047 34.615 0.00 0.00 0.00 4.40
4984 13001 1.337703 GCTGTCATTGCCACAAGAACA 59.662 47.619 0.00 0.00 0.00 3.18
5027 13044 8.836413 GTCATTATATGCTGCCACTAACTTTAA 58.164 33.333 0.00 0.00 0.00 1.52
5056 13073 5.428457 TGTGAACCAGGTATCAGTATCCAAT 59.572 40.000 0.00 0.00 0.00 3.16
5083 13100 2.680841 TGATAACCCGATTGCGAAAAGG 59.319 45.455 0.00 0.00 40.82 3.11
5092 13109 4.502558 CGATTGCGAAAAGGTTATACGAC 58.497 43.478 0.00 0.00 40.82 4.34
5110 13127 2.034879 CGATTGGCTCGTGCAACCT 61.035 57.895 12.07 0.00 42.56 3.50
5122 13139 1.065551 GTGCAACCTGGTTCAGACAAC 59.934 52.381 9.62 0.00 32.44 3.32
5125 13142 1.157870 AACCTGGTTCAGACAACGCG 61.158 55.000 6.18 3.53 32.44 6.01
5143 13160 1.872237 GCGAAGAGGTACTTGCACACA 60.872 52.381 0.00 0.00 41.55 3.72
5193 13210 1.374631 CGCAGCTGCAGAACTGGTA 60.375 57.895 36.03 0.00 42.21 3.25
5232 13249 0.914551 CGTCGCGTCGAGAATTCATT 59.085 50.000 20.81 0.00 36.23 2.57
5233 13250 2.106418 CGTCGCGTCGAGAATTCATTA 58.894 47.619 20.81 0.00 36.23 1.90
5234 13251 2.528688 CGTCGCGTCGAGAATTCATTAA 59.471 45.455 20.81 0.00 36.23 1.40
5265 13283 3.846588 TCTCCTAAGAAACCAAGAGGCAT 59.153 43.478 0.00 0.00 39.06 4.40
5266 13284 3.944015 CTCCTAAGAAACCAAGAGGCATG 59.056 47.826 0.00 0.00 39.06 4.06
5295 13313 2.960819 ACATCGGCAACACTAGAAGAC 58.039 47.619 0.00 0.00 0.00 3.01
5299 13317 2.101750 TCGGCAACACTAGAAGACACAA 59.898 45.455 0.00 0.00 0.00 3.33
5308 13326 5.410746 ACACTAGAAGACACAAGCATCATTG 59.589 40.000 0.00 0.00 36.22 2.82
5352 13373 2.476185 CGAAATGAGTTTTGCTAGGCCG 60.476 50.000 0.00 0.00 0.00 6.13
5469 13492 8.986477 AACATGTAAAGATGAACAAAATAGGC 57.014 30.769 0.00 0.00 0.00 3.93
5472 13495 5.708230 TGTAAAGATGAACAAAATAGGCGGT 59.292 36.000 0.00 0.00 0.00 5.68
5487 13511 1.800681 CGGTGATCTTTTTCCCGCC 59.199 57.895 0.00 0.00 0.00 6.13
5500 13525 2.348998 CCGCCTCAGGAAACAGCT 59.651 61.111 0.00 0.00 0.00 4.24
5529 13554 2.551032 TCTGATGATTTCATGCCGCATC 59.449 45.455 1.86 0.00 36.57 3.91
5536 13561 3.945434 CATGCCGCATCGTCCTGC 61.945 66.667 1.86 0.00 38.81 4.85
5618 13737 0.469070 AGCTCTGCATTGCCTAGAGG 59.531 55.000 21.12 8.62 38.65 3.69
5647 13766 5.741388 ATCATTGGCTCGTTATGAAACTC 57.259 39.130 0.00 0.00 32.54 3.01
5659 13778 0.828022 TGAAACTCGGACACACCTGT 59.172 50.000 0.00 0.00 36.31 4.00
5675 13794 3.440173 CACCTGTCGTTGGCATTTATCTT 59.560 43.478 0.00 0.00 0.00 2.40
5679 13798 5.527214 CCTGTCGTTGGCATTTATCTTATGA 59.473 40.000 0.00 0.00 0.00 2.15
5724 13845 7.658179 TTGCAGAGCGGATTAAGAATTATAG 57.342 36.000 0.00 0.00 0.00 1.31
5725 13846 6.166279 TGCAGAGCGGATTAAGAATTATAGG 58.834 40.000 0.00 0.00 0.00 2.57
5771 13900 2.628178 ACGAACTCCTCATTGTGTCTCA 59.372 45.455 0.00 0.00 0.00 3.27
5778 14561 7.667575 ACTCCTCATTGTGTCTCACTTATAT 57.332 36.000 1.72 0.00 35.11 0.86
5840 14628 9.033481 CAACATGATAAAATTGCATCGGTAAAT 57.967 29.630 0.00 0.00 0.00 1.40
5841 14629 9.598517 AACATGATAAAATTGCATCGGTAAATT 57.401 25.926 0.00 0.00 0.00 1.82
5842 14630 9.598517 ACATGATAAAATTGCATCGGTAAATTT 57.401 25.926 0.00 0.00 35.55 1.82
5864 14652 4.759516 TTATTTTTGGAGAGCAACCGTC 57.240 40.909 0.00 0.00 0.00 4.79
5873 14661 1.416813 GAGCAACCGTCAGATCAGCG 61.417 60.000 0.00 0.00 0.00 5.18
5895 14683 5.388061 GCGGCGTTTTCTTTATTTTCCTTTC 60.388 40.000 9.37 0.00 0.00 2.62
5917 14721 9.736023 CTTTCTAGTTCAATTTTGTTTAGCAGT 57.264 29.630 0.00 0.00 0.00 4.40
6006 14811 0.752009 CCACTGAGCTAGGTCGGCTA 60.752 60.000 26.90 5.20 40.40 3.93
6009 14814 2.885266 CACTGAGCTAGGTCGGCTATTA 59.115 50.000 26.90 3.43 40.40 0.98
6010 14815 3.508012 CACTGAGCTAGGTCGGCTATTAT 59.492 47.826 26.90 7.04 40.40 1.28
6011 14816 3.508012 ACTGAGCTAGGTCGGCTATTATG 59.492 47.826 26.90 7.23 40.40 1.90
6014 14819 5.262009 TGAGCTAGGTCGGCTATTATGTAT 58.738 41.667 16.71 0.00 40.40 2.29
6015 14820 5.715279 TGAGCTAGGTCGGCTATTATGTATT 59.285 40.000 16.71 0.00 40.40 1.89
6020 14825 8.818057 GCTAGGTCGGCTATTATGTATTAATTG 58.182 37.037 0.00 0.00 32.66 2.32
6070 14875 9.909644 TTTACTAGTGTACTTAGCTCAAGAAAG 57.090 33.333 5.39 0.00 37.71 2.62
6071 14876 6.391537 ACTAGTGTACTTAGCTCAAGAAAGC 58.608 40.000 0.00 0.00 42.82 3.51
6072 14877 5.215252 AGTGTACTTAGCTCAAGAAAGCA 57.785 39.130 0.00 0.00 45.00 3.91
6073 14878 5.799213 AGTGTACTTAGCTCAAGAAAGCAT 58.201 37.500 0.00 0.00 45.00 3.79
6074 14879 5.641209 AGTGTACTTAGCTCAAGAAAGCATG 59.359 40.000 0.00 0.00 45.00 4.06
6075 14880 5.639506 GTGTACTTAGCTCAAGAAAGCATGA 59.360 40.000 0.00 0.00 45.00 3.07
6076 14881 5.639506 TGTACTTAGCTCAAGAAAGCATGAC 59.360 40.000 0.00 0.00 45.00 3.06
6077 14882 3.681897 ACTTAGCTCAAGAAAGCATGACG 59.318 43.478 0.00 0.00 45.00 4.35
6078 14883 1.446907 AGCTCAAGAAAGCATGACGG 58.553 50.000 0.00 0.00 45.00 4.79
6079 14884 0.179179 GCTCAAGAAAGCATGACGGC 60.179 55.000 0.00 0.00 42.05 5.68
6080 14885 1.159285 CTCAAGAAAGCATGACGGCA 58.841 50.000 0.00 0.00 35.83 5.69
6081 14886 1.129998 CTCAAGAAAGCATGACGGCAG 59.870 52.381 0.00 0.00 35.83 4.85
6082 14887 0.877071 CAAGAAAGCATGACGGCAGT 59.123 50.000 0.00 0.00 35.83 4.40
6083 14888 0.877071 AAGAAAGCATGACGGCAGTG 59.123 50.000 0.00 0.00 35.83 3.66
6084 14889 0.250467 AGAAAGCATGACGGCAGTGT 60.250 50.000 0.00 0.00 35.83 3.55
6085 14890 0.593128 GAAAGCATGACGGCAGTGTT 59.407 50.000 0.00 0.00 35.83 3.32
6086 14891 1.804151 GAAAGCATGACGGCAGTGTTA 59.196 47.619 0.00 0.00 35.83 2.41
6087 14892 1.890876 AAGCATGACGGCAGTGTTAA 58.109 45.000 0.00 0.00 35.83 2.01
6088 14893 1.890876 AGCATGACGGCAGTGTTAAA 58.109 45.000 0.00 0.00 35.83 1.52
6089 14894 2.226330 AGCATGACGGCAGTGTTAAAA 58.774 42.857 0.00 0.00 35.83 1.52
6090 14895 2.621055 AGCATGACGGCAGTGTTAAAAA 59.379 40.909 0.00 0.00 35.83 1.94
6091 14896 2.979813 GCATGACGGCAGTGTTAAAAAG 59.020 45.455 0.00 0.00 0.00 2.27
6092 14897 3.304391 GCATGACGGCAGTGTTAAAAAGA 60.304 43.478 0.00 0.00 0.00 2.52
6093 14898 4.791411 GCATGACGGCAGTGTTAAAAAGAA 60.791 41.667 0.00 0.00 0.00 2.52
6094 14899 4.966965 TGACGGCAGTGTTAAAAAGAAA 57.033 36.364 0.00 0.00 0.00 2.52
6095 14900 5.312120 TGACGGCAGTGTTAAAAAGAAAA 57.688 34.783 0.00 0.00 0.00 2.29
6096 14901 5.096849 TGACGGCAGTGTTAAAAAGAAAAC 58.903 37.500 0.00 0.00 0.00 2.43
6097 14902 5.061920 ACGGCAGTGTTAAAAAGAAAACA 57.938 34.783 0.00 0.00 33.35 2.83
6098 14903 5.656480 ACGGCAGTGTTAAAAAGAAAACAT 58.344 33.333 0.00 0.00 37.87 2.71
6099 14904 5.518487 ACGGCAGTGTTAAAAAGAAAACATG 59.482 36.000 0.00 0.00 37.87 3.21
6100 14905 5.746245 CGGCAGTGTTAAAAAGAAAACATGA 59.254 36.000 0.00 0.00 37.87 3.07
6101 14906 6.291585 CGGCAGTGTTAAAAAGAAAACATGAC 60.292 38.462 0.00 0.00 37.87 3.06
6102 14907 6.291585 GGCAGTGTTAAAAAGAAAACATGACG 60.292 38.462 0.00 0.00 37.87 4.35
6103 14908 6.470877 GCAGTGTTAAAAAGAAAACATGACGA 59.529 34.615 0.00 0.00 37.87 4.20
6104 14909 7.513041 GCAGTGTTAAAAAGAAAACATGACGAC 60.513 37.037 0.00 0.00 37.87 4.34
6105 14910 7.483375 CAGTGTTAAAAAGAAAACATGACGACA 59.517 33.333 0.00 0.00 37.87 4.35
6106 14911 8.188139 AGTGTTAAAAAGAAAACATGACGACAT 58.812 29.630 0.00 0.00 37.87 3.06
6107 14912 8.469125 GTGTTAAAAAGAAAACATGACGACATC 58.531 33.333 0.00 0.00 37.87 3.06
6108 14913 8.184848 TGTTAAAAAGAAAACATGACGACATCA 58.815 29.630 0.00 0.00 43.13 3.07
6109 14914 8.469125 GTTAAAAAGAAAACATGACGACATCAC 58.531 33.333 0.00 0.00 41.24 3.06
6110 14915 5.749596 AAAGAAAACATGACGACATCACA 57.250 34.783 0.00 0.00 41.24 3.58
6111 14916 4.732285 AGAAAACATGACGACATCACAC 57.268 40.909 0.00 0.00 41.24 3.82
6112 14917 3.184379 AGAAAACATGACGACATCACACG 59.816 43.478 0.00 0.00 41.24 4.49
6113 14918 2.432206 AACATGACGACATCACACGA 57.568 45.000 0.00 0.00 41.24 4.35
6114 14919 1.698165 ACATGACGACATCACACGAC 58.302 50.000 0.00 0.00 41.24 4.34
6115 14920 0.635231 CATGACGACATCACACGACG 59.365 55.000 0.00 0.00 41.24 5.12
6116 14921 0.456142 ATGACGACATCACACGACGG 60.456 55.000 0.00 0.00 41.24 4.79
6117 14922 1.081641 GACGACATCACACGACGGT 60.082 57.895 0.00 0.00 0.00 4.83
6118 14923 1.063951 GACGACATCACACGACGGTC 61.064 60.000 0.00 0.00 0.00 4.79
6119 14924 1.800315 CGACATCACACGACGGTCC 60.800 63.158 1.91 0.00 0.00 4.46
6120 14925 1.585006 GACATCACACGACGGTCCT 59.415 57.895 1.91 0.00 0.00 3.85
6121 14926 0.038526 GACATCACACGACGGTCCTT 60.039 55.000 1.91 0.00 0.00 3.36
6122 14927 0.391597 ACATCACACGACGGTCCTTT 59.608 50.000 1.91 0.00 0.00 3.11
6123 14928 1.202604 ACATCACACGACGGTCCTTTT 60.203 47.619 1.91 0.00 0.00 2.27
6124 14929 1.871039 CATCACACGACGGTCCTTTTT 59.129 47.619 1.91 0.00 0.00 1.94
6146 14951 5.771602 TTTTGTTTGCGAGAAAAACTTCC 57.228 34.783 0.00 0.00 38.17 3.46
6147 14952 4.442375 TTGTTTGCGAGAAAAACTTCCA 57.558 36.364 0.00 0.00 38.17 3.53
6148 14953 4.027572 TGTTTGCGAGAAAAACTTCCAG 57.972 40.909 0.00 0.00 38.17 3.86
6149 14954 3.442273 TGTTTGCGAGAAAAACTTCCAGT 59.558 39.130 0.00 0.00 38.17 4.00
6150 14955 3.963383 TTGCGAGAAAAACTTCCAGTC 57.037 42.857 0.00 0.00 0.00 3.51
6151 14956 2.218603 TGCGAGAAAAACTTCCAGTCC 58.781 47.619 0.00 0.00 0.00 3.85
6152 14957 2.218603 GCGAGAAAAACTTCCAGTCCA 58.781 47.619 0.00 0.00 0.00 4.02
6153 14958 2.814336 GCGAGAAAAACTTCCAGTCCAT 59.186 45.455 0.00 0.00 0.00 3.41
6154 14959 3.253432 GCGAGAAAAACTTCCAGTCCATT 59.747 43.478 0.00 0.00 0.00 3.16
6155 14960 4.613850 GCGAGAAAAACTTCCAGTCCATTC 60.614 45.833 0.00 0.00 0.00 2.67
6156 14961 4.515191 CGAGAAAAACTTCCAGTCCATTCA 59.485 41.667 0.00 0.00 0.00 2.57
6157 14962 5.560953 CGAGAAAAACTTCCAGTCCATTCAC 60.561 44.000 0.00 0.00 0.00 3.18
6158 14963 4.584743 AGAAAAACTTCCAGTCCATTCACC 59.415 41.667 0.00 0.00 0.00 4.02
6159 14964 3.884037 AAACTTCCAGTCCATTCACCT 57.116 42.857 0.00 0.00 0.00 4.00
6160 14965 3.884037 AACTTCCAGTCCATTCACCTT 57.116 42.857 0.00 0.00 0.00 3.50
6161 14966 3.425162 ACTTCCAGTCCATTCACCTTC 57.575 47.619 0.00 0.00 0.00 3.46
6162 14967 2.711009 ACTTCCAGTCCATTCACCTTCA 59.289 45.455 0.00 0.00 0.00 3.02
6163 14968 3.138283 ACTTCCAGTCCATTCACCTTCAA 59.862 43.478 0.00 0.00 0.00 2.69
6164 14969 4.202609 ACTTCCAGTCCATTCACCTTCAAT 60.203 41.667 0.00 0.00 0.00 2.57
6165 14970 3.955471 TCCAGTCCATTCACCTTCAATC 58.045 45.455 0.00 0.00 0.00 2.67
6166 14971 3.330405 TCCAGTCCATTCACCTTCAATCA 59.670 43.478 0.00 0.00 0.00 2.57
6167 14972 4.018141 TCCAGTCCATTCACCTTCAATCAT 60.018 41.667 0.00 0.00 0.00 2.45
6168 14973 4.097437 CCAGTCCATTCACCTTCAATCATG 59.903 45.833 0.00 0.00 0.00 3.07
6169 14974 4.945543 CAGTCCATTCACCTTCAATCATGA 59.054 41.667 0.00 0.00 0.00 3.07
6170 14975 4.946157 AGTCCATTCACCTTCAATCATGAC 59.054 41.667 0.00 0.00 34.61 3.06
6171 14976 4.701651 GTCCATTCACCTTCAATCATGACA 59.298 41.667 0.00 0.00 34.61 3.58
6172 14977 5.183713 GTCCATTCACCTTCAATCATGACAA 59.816 40.000 0.00 0.00 34.61 3.18
6173 14978 5.953548 TCCATTCACCTTCAATCATGACAAT 59.046 36.000 0.00 0.00 34.61 2.71
6174 14979 7.067372 GTCCATTCACCTTCAATCATGACAATA 59.933 37.037 0.00 0.00 34.61 1.90
6175 14980 7.067372 TCCATTCACCTTCAATCATGACAATAC 59.933 37.037 0.00 0.00 34.61 1.89
6176 14981 7.148035 CCATTCACCTTCAATCATGACAATACA 60.148 37.037 0.00 0.00 34.61 2.29
6177 14982 6.990341 TCACCTTCAATCATGACAATACAG 57.010 37.500 0.00 0.00 34.61 2.74
6178 14983 6.475504 TCACCTTCAATCATGACAATACAGT 58.524 36.000 0.00 0.00 34.61 3.55
6179 14984 6.595326 TCACCTTCAATCATGACAATACAGTC 59.405 38.462 0.00 0.00 34.61 3.51
6180 14985 5.882557 ACCTTCAATCATGACAATACAGTCC 59.117 40.000 0.00 0.00 37.73 3.85
6181 14986 6.118170 CCTTCAATCATGACAATACAGTCCT 58.882 40.000 0.00 0.00 37.73 3.85
6182 14987 6.600822 CCTTCAATCATGACAATACAGTCCTT 59.399 38.462 0.00 0.00 37.73 3.36
6183 14988 6.990341 TCAATCATGACAATACAGTCCTTG 57.010 37.500 0.00 0.00 37.73 3.61
6184 14989 5.882000 TCAATCATGACAATACAGTCCTTGG 59.118 40.000 0.00 0.00 37.73 3.61
6185 14990 4.220693 TCATGACAATACAGTCCTTGGG 57.779 45.455 0.00 0.00 37.73 4.12
6186 14991 3.843619 TCATGACAATACAGTCCTTGGGA 59.156 43.478 0.00 0.00 37.73 4.37
6187 14992 4.288366 TCATGACAATACAGTCCTTGGGAA 59.712 41.667 0.00 0.00 37.73 3.97
6188 14993 4.715534 TGACAATACAGTCCTTGGGAAA 57.284 40.909 0.00 0.00 37.73 3.13
6189 14994 5.055265 TGACAATACAGTCCTTGGGAAAA 57.945 39.130 0.00 0.00 37.73 2.29
6190 14995 5.450453 TGACAATACAGTCCTTGGGAAAAA 58.550 37.500 0.00 0.00 37.73 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 0.674269 TATTCCACCCCGTTGCGAAC 60.674 55.000 0.00 0.00 0.00 3.95
6 7 0.036448 TTATTCCACCCCGTTGCGAA 59.964 50.000 0.00 0.00 0.00 4.70
7 8 0.674269 GTTATTCCACCCCGTTGCGA 60.674 55.000 0.00 0.00 0.00 5.10
8 9 0.956410 TGTTATTCCACCCCGTTGCG 60.956 55.000 0.00 0.00 0.00 4.85
9 10 0.524414 GTGTTATTCCACCCCGTTGC 59.476 55.000 0.00 0.00 0.00 4.17
38 39 1.749634 GTGTACCACGTGAGATAGCCT 59.250 52.381 19.30 0.00 0.00 4.58
39 40 1.202382 GGTGTACCACGTGAGATAGCC 60.202 57.143 19.30 8.12 34.83 3.93
62 63 0.299895 CGCACAGATCTTGATGCGTC 59.700 55.000 26.43 0.00 44.60 5.19
64 65 1.640069 CCGCACAGATCTTGATGCG 59.360 57.895 27.24 27.24 46.82 4.73
84 85 3.004002 ACGCATTGACTATCGTCGGATTA 59.996 43.478 0.00 0.00 43.21 1.75
92 93 0.229753 GCCGAACGCATTGACTATCG 59.770 55.000 0.00 0.00 37.47 2.92
104 105 0.177141 TAAAGGATCCCTGCCGAACG 59.823 55.000 8.55 0.00 32.13 3.95
106 107 3.086282 GTTTTAAAGGATCCCTGCCGAA 58.914 45.455 8.55 0.00 32.13 4.30
111 112 5.264395 ACATCAGGTTTTAAAGGATCCCTG 58.736 41.667 8.55 6.09 40.63 4.45
114 115 6.659242 TCTGAACATCAGGTTTTAAAGGATCC 59.341 38.462 2.48 2.48 44.39 3.36
115 116 7.391833 ACTCTGAACATCAGGTTTTAAAGGATC 59.608 37.037 7.47 0.00 44.39 3.36
116 117 7.234355 ACTCTGAACATCAGGTTTTAAAGGAT 58.766 34.615 7.47 0.00 44.39 3.24
117 118 6.601332 ACTCTGAACATCAGGTTTTAAAGGA 58.399 36.000 7.47 0.00 44.39 3.36
118 119 6.884280 ACTCTGAACATCAGGTTTTAAAGG 57.116 37.500 7.47 0.00 44.39 3.11
121 122 9.793259 AGATAAACTCTGAACATCAGGTTTTAA 57.207 29.630 21.10 11.89 44.39 1.52
122 123 9.793259 AAGATAAACTCTGAACATCAGGTTTTA 57.207 29.630 21.10 16.89 44.39 1.52
124 125 8.697507 AAAGATAAACTCTGAACATCAGGTTT 57.302 30.769 20.37 20.37 44.39 3.27
137 138 8.465201 ACGAATAACTACGGAAAGATAAACTCT 58.535 33.333 0.00 0.00 34.96 3.24
143 144 6.039047 AGAGCACGAATAACTACGGAAAGATA 59.961 38.462 0.00 0.00 0.00 1.98
144 145 5.007385 AGCACGAATAACTACGGAAAGAT 57.993 39.130 0.00 0.00 0.00 2.40
145 146 4.157289 AGAGCACGAATAACTACGGAAAGA 59.843 41.667 0.00 0.00 0.00 2.52
161 587 1.669115 CACAGTTGGGGAGAGCACG 60.669 63.158 0.00 0.00 0.00 5.34
218 655 2.981921 TGAGCCATGGGTGAGAGATAT 58.018 47.619 23.86 0.00 0.00 1.63
219 656 2.477104 TGAGCCATGGGTGAGAGATA 57.523 50.000 23.86 0.00 0.00 1.98
279 1844 0.606604 TCTTTGTGGAGTACGAGCCC 59.393 55.000 0.00 0.00 0.00 5.19
291 1856 0.508641 CCTGCGAACGTCTCTTTGTG 59.491 55.000 0.00 0.00 0.00 3.33
294 1859 0.387929 TGTCCTGCGAACGTCTCTTT 59.612 50.000 0.00 0.00 0.00 2.52
298 1863 2.049063 GCTGTCCTGCGAACGTCT 60.049 61.111 0.00 0.00 0.00 4.18
303 1868 2.032376 TGCATGCTGTCCTGCGAA 59.968 55.556 20.33 0.00 41.32 4.70
311 1876 0.588252 GTCAAACTCGTGCATGCTGT 59.412 50.000 20.33 9.58 0.00 4.40
363 1929 1.394266 TAACCCTAGCGCTTACGGGG 61.394 60.000 30.54 27.98 42.22 5.73
404 3635 4.959596 GAGAGATGGGCGGCGCTC 62.960 72.222 32.30 30.12 0.00 5.03
407 3638 4.292178 GAGGAGAGATGGGCGGCG 62.292 72.222 0.51 0.51 0.00 6.46
408 3639 2.841988 AGAGGAGAGATGGGCGGC 60.842 66.667 0.00 0.00 0.00 6.53
409 3640 2.560119 CGAGAGGAGAGATGGGCGG 61.560 68.421 0.00 0.00 0.00 6.13
410 3641 1.791103 GACGAGAGGAGAGATGGGCG 61.791 65.000 0.00 0.00 0.00 6.13
411 3642 0.467290 AGACGAGAGGAGAGATGGGC 60.467 60.000 0.00 0.00 0.00 5.36
412 3643 1.604604 GAGACGAGAGGAGAGATGGG 58.395 60.000 0.00 0.00 0.00 4.00
413 3644 1.142870 AGGAGACGAGAGGAGAGATGG 59.857 57.143 0.00 0.00 0.00 3.51
414 3645 2.104792 AGAGGAGACGAGAGGAGAGATG 59.895 54.545 0.00 0.00 0.00 2.90
415 3646 2.368875 GAGAGGAGACGAGAGGAGAGAT 59.631 54.545 0.00 0.00 0.00 2.75
416 3647 1.760613 GAGAGGAGACGAGAGGAGAGA 59.239 57.143 0.00 0.00 0.00 3.10
417 3648 1.202651 GGAGAGGAGACGAGAGGAGAG 60.203 61.905 0.00 0.00 0.00 3.20
418 3649 0.834612 GGAGAGGAGACGAGAGGAGA 59.165 60.000 0.00 0.00 0.00 3.71
419 3650 0.179029 GGGAGAGGAGACGAGAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
543 3785 3.783362 TTGGTGGTGCCGAACAGGG 62.783 63.158 0.00 0.00 41.48 4.45
702 3958 0.036732 AAATCGGCAGCAAGAGTGGA 59.963 50.000 0.00 0.00 0.00 4.02
713 3969 0.035152 ATCCTGCAGTGAAATCGGCA 60.035 50.000 13.81 0.00 37.07 5.69
715 3971 1.860950 CGTATCCTGCAGTGAAATCGG 59.139 52.381 13.81 0.00 0.00 4.18
721 3977 4.034246 AGGCGTATCCTGCAGTGA 57.966 55.556 13.81 10.11 45.54 3.41
753 4794 1.342819 CGACAAAATCAAAAGGGGGCA 59.657 47.619 0.00 0.00 0.00 5.36
754 4795 1.616374 TCGACAAAATCAAAAGGGGGC 59.384 47.619 0.00 0.00 0.00 5.80
761 4812 6.959671 AAGCTTTGTTTCGACAAAATCAAA 57.040 29.167 0.00 0.00 38.87 2.69
768 4819 5.700846 TGTTGTAAAGCTTTGTTTCGACAA 58.299 33.333 22.02 18.29 0.00 3.18
770 4821 6.620253 TTTGTTGTAAAGCTTTGTTTCGAC 57.380 33.333 22.02 16.78 0.00 4.20
781 4832 4.163552 GTTCCGCCTATTTGTTGTAAAGC 58.836 43.478 0.00 0.00 0.00 3.51
784 4835 3.661944 TCGTTCCGCCTATTTGTTGTAA 58.338 40.909 0.00 0.00 0.00 2.41
790 4841 1.571919 CTCCTCGTTCCGCCTATTTG 58.428 55.000 0.00 0.00 0.00 2.32
791 4842 0.464452 CCTCCTCGTTCCGCCTATTT 59.536 55.000 0.00 0.00 0.00 1.40
792 4843 1.400530 CCCTCCTCGTTCCGCCTATT 61.401 60.000 0.00 0.00 0.00 1.73
883 4958 1.048601 TCCGTGCTCTTCTTCTTGGT 58.951 50.000 0.00 0.00 0.00 3.67
884 4959 2.393271 ATCCGTGCTCTTCTTCTTGG 57.607 50.000 0.00 0.00 0.00 3.61
885 4960 3.124297 GTCAATCCGTGCTCTTCTTCTTG 59.876 47.826 0.00 0.00 0.00 3.02
934 6255 0.321564 CTGTTGTGGAATGAGGCCGA 60.322 55.000 0.00 0.00 0.00 5.54
935 6256 1.308069 CCTGTTGTGGAATGAGGCCG 61.308 60.000 0.00 0.00 0.00 6.13
936 6257 0.038166 TCCTGTTGTGGAATGAGGCC 59.962 55.000 0.00 0.00 32.39 5.19
937 6258 1.457346 CTCCTGTTGTGGAATGAGGC 58.543 55.000 0.00 0.00 35.43 4.70
939 6260 1.457346 GCCTCCTGTTGTGGAATGAG 58.543 55.000 0.00 0.00 35.43 2.90
940 6261 0.038166 GGCCTCCTGTTGTGGAATGA 59.962 55.000 0.00 0.00 35.43 2.57
942 6263 0.482446 TTGGCCTCCTGTTGTGGAAT 59.518 50.000 3.32 0.00 35.43 3.01
943 6264 0.178992 CTTGGCCTCCTGTTGTGGAA 60.179 55.000 3.32 0.00 35.43 3.53
944 6265 1.059584 TCTTGGCCTCCTGTTGTGGA 61.060 55.000 3.32 0.00 34.52 4.02
945 6266 0.178992 TTCTTGGCCTCCTGTTGTGG 60.179 55.000 3.32 0.00 0.00 4.17
946 6267 1.202806 TCTTCTTGGCCTCCTGTTGTG 60.203 52.381 3.32 0.00 0.00 3.33
947 6268 1.072965 CTCTTCTTGGCCTCCTGTTGT 59.927 52.381 3.32 0.00 0.00 3.32
948 6269 1.349026 TCTCTTCTTGGCCTCCTGTTG 59.651 52.381 3.32 0.00 0.00 3.33
949 6270 1.734655 TCTCTTCTTGGCCTCCTGTT 58.265 50.000 3.32 0.00 0.00 3.16
967 6291 0.034616 CGGATGCTTGGAGGAGGATC 59.965 60.000 0.00 0.00 41.97 3.36
1075 6413 2.900546 AGTTCTTGTTGAGGGAGACGAT 59.099 45.455 0.00 0.00 0.00 3.73
1155 6506 4.566759 GGCAAAGGACACAGAAAAAGAAAC 59.433 41.667 0.00 0.00 0.00 2.78
1158 6509 2.693074 GGGCAAAGGACACAGAAAAAGA 59.307 45.455 0.00 0.00 0.00 2.52
1161 6512 2.452600 AGGGCAAAGGACACAGAAAA 57.547 45.000 0.00 0.00 0.00 2.29
1162 6513 2.441750 ACTAGGGCAAAGGACACAGAAA 59.558 45.455 0.00 0.00 0.00 2.52
1163 6514 2.054799 ACTAGGGCAAAGGACACAGAA 58.945 47.619 0.00 0.00 0.00 3.02
1164 6515 1.729586 ACTAGGGCAAAGGACACAGA 58.270 50.000 0.00 0.00 0.00 3.41
1165 6516 3.914426 ATACTAGGGCAAAGGACACAG 57.086 47.619 0.00 0.00 0.00 3.66
1166 6517 4.331968 CAAATACTAGGGCAAAGGACACA 58.668 43.478 0.00 0.00 0.00 3.72
1167 6518 3.694566 CCAAATACTAGGGCAAAGGACAC 59.305 47.826 0.00 0.00 0.00 3.67
1267 6619 2.196749 CATAATGCGCGAACTCAGACT 58.803 47.619 12.10 0.00 0.00 3.24
1323 6680 7.883833 ACTCTTACTATCAATACTGCGAGGATA 59.116 37.037 0.00 0.00 0.00 2.59
1342 6701 5.805994 CCGTTCCACAATCTTCTACTCTTAC 59.194 44.000 0.00 0.00 0.00 2.34
1354 6713 0.798776 CTGCTCACCGTTCCACAATC 59.201 55.000 0.00 0.00 0.00 2.67
1355 6714 0.606401 CCTGCTCACCGTTCCACAAT 60.606 55.000 0.00 0.00 0.00 2.71
1356 6715 1.227823 CCTGCTCACCGTTCCACAA 60.228 57.895 0.00 0.00 0.00 3.33
1357 6716 2.425592 CCTGCTCACCGTTCCACA 59.574 61.111 0.00 0.00 0.00 4.17
1358 6717 2.358737 CCCTGCTCACCGTTCCAC 60.359 66.667 0.00 0.00 0.00 4.02
1359 6718 2.448582 AACCCTGCTCACCGTTCCA 61.449 57.895 0.00 0.00 0.00 3.53
1360 6719 1.966451 CAACCCTGCTCACCGTTCC 60.966 63.158 0.00 0.00 0.00 3.62
1372 6732 1.627834 CAGGAGAGAAAGCTCAACCCT 59.372 52.381 0.00 0.00 43.81 4.34
1412 6772 4.469657 CAATTCCCCCAATCGATTCCTAA 58.530 43.478 7.92 0.00 0.00 2.69
1477 6860 7.663493 GCTTCTTTCTATGCCTTGTATAATCCT 59.337 37.037 0.00 0.00 0.00 3.24
1492 6875 8.338418 AGTAAAGAATAGGGGCTTCTTTCTAT 57.662 34.615 13.47 2.15 45.29 1.98
1495 6878 7.704578 AAAGTAAAGAATAGGGGCTTCTTTC 57.295 36.000 13.47 7.71 45.29 2.62
1539 6925 6.987386 ACTACTGATTAGCCAGACATATGTC 58.013 40.000 25.47 25.47 45.08 3.06
1595 6985 2.375174 TGGCTATTTGGTGTGGAACTCT 59.625 45.455 0.00 0.00 38.04 3.24
1723 7125 5.195940 TGGGAGAAACCAATGATCTCATTC 58.804 41.667 2.45 0.00 44.10 2.67
2067 9746 6.095440 AGTTCTGTTTGTGCTAATGTGAAGTT 59.905 34.615 0.00 0.00 0.00 2.66
3184 10867 9.665264 CAATTTCAGACAAAAGGAAGTACTAAC 57.335 33.333 0.00 0.00 0.00 2.34
4274 12083 4.699735 TCCACCTGTTAGCATAAACATGTG 59.300 41.667 18.98 18.98 46.66 3.21
4275 12084 4.917385 TCCACCTGTTAGCATAAACATGT 58.083 39.130 0.00 0.00 38.31 3.21
4301 12110 3.118775 GGGCAAACTTCAAAACAGGTCTT 60.119 43.478 0.00 0.00 0.00 3.01
4391 12200 5.662657 AGGGCAAGCCATAACTTCAATAAAT 59.337 36.000 13.87 0.00 37.98 1.40
4423 12232 4.690184 TGCAGCAGTGTCATAAATGAAG 57.310 40.909 0.00 0.00 38.75 3.02
4464 12275 7.231722 GGTATCTAGATCCTACAGCTCAGAAAA 59.768 40.741 8.95 0.00 0.00 2.29
4475 12286 9.617523 GTATTGTAGAGGGTATCTAGATCCTAC 57.382 40.741 8.95 13.22 41.28 3.18
4497 12308 4.535781 TGCAGGGCAATAATCAGTGTATT 58.464 39.130 0.00 0.00 34.76 1.89
4515 12326 1.230635 CCCGTTCAGACAACCTGCAG 61.231 60.000 6.78 6.78 42.62 4.41
4531 12342 2.097036 GGTTTTATTTGACCTCCCCCG 58.903 52.381 0.00 0.00 33.08 5.73
4540 12351 4.835615 TGGCCTTTAGCAGGTTTTATTTGA 59.164 37.500 3.32 0.00 46.07 2.69
4620 12431 5.757320 AGATGAAATGTAGTGAGCATGCTAC 59.243 40.000 22.74 15.83 38.35 3.58
4643 12454 0.251341 AGCAAGGCCCTACAACCAAG 60.251 55.000 0.00 0.00 0.00 3.61
4680 12494 7.316393 TGAATGGGTCAGTAGGGATATAAAG 57.684 40.000 0.00 0.00 0.00 1.85
4746 12560 2.886523 CTGAATTGGACAGAACCTGCAA 59.113 45.455 0.00 0.00 37.54 4.08
4755 12570 1.318158 GCTGGGCCTGAATTGGACAG 61.318 60.000 15.36 0.00 36.67 3.51
4765 12580 1.822613 CAGTAGCATGCTGGGCCTG 60.823 63.158 30.42 22.90 45.67 4.85
4855 12679 3.365969 CGGCCTTCCAAAACTACAATGAC 60.366 47.826 0.00 0.00 0.00 3.06
4871 12695 0.802494 CAGAAATTACGCACGGCCTT 59.198 50.000 0.00 0.00 0.00 4.35
4873 12697 0.800012 TTCAGAAATTACGCACGGCC 59.200 50.000 0.00 0.00 0.00 6.13
4906 12730 5.428253 GAGCAGGATAATAAGACACAACCA 58.572 41.667 0.00 0.00 0.00 3.67
4907 12731 4.816925 GGAGCAGGATAATAAGACACAACC 59.183 45.833 0.00 0.00 0.00 3.77
4908 12732 5.428253 TGGAGCAGGATAATAAGACACAAC 58.572 41.667 0.00 0.00 0.00 3.32
4909 12733 5.189736 ACTGGAGCAGGATAATAAGACACAA 59.810 40.000 0.00 0.00 35.51 3.33
4910 12734 4.716784 ACTGGAGCAGGATAATAAGACACA 59.283 41.667 0.00 0.00 35.51 3.72
4911 12735 5.283457 ACTGGAGCAGGATAATAAGACAC 57.717 43.478 0.00 0.00 35.51 3.67
4944 12770 7.867909 TGACAGCAAGATTAAGGAGAATATACG 59.132 37.037 0.00 0.00 0.00 3.06
4953 12779 3.696051 GGCAATGACAGCAAGATTAAGGA 59.304 43.478 0.00 0.00 0.00 3.36
4968 12985 6.815089 AGTAAAAATGTTCTTGTGGCAATGA 58.185 32.000 0.00 0.00 0.00 2.57
4972 12989 5.971763 ACAAGTAAAAATGTTCTTGTGGCA 58.028 33.333 8.29 0.00 45.38 4.92
5027 13044 3.394606 ACTGATACCTGGTTCACAAGGTT 59.605 43.478 11.46 0.21 34.11 3.50
5056 13073 2.650322 GCAATCGGGTTATCAAAGGGA 58.350 47.619 0.00 0.00 0.00 4.20
5104 13121 0.307760 CGTTGTCTGAACCAGGTTGC 59.692 55.000 10.47 2.11 31.51 4.17
5110 13127 0.103390 TCTTCGCGTTGTCTGAACCA 59.897 50.000 5.77 0.00 0.00 3.67
5122 13139 0.666274 TGTGCAAGTACCTCTTCGCG 60.666 55.000 0.00 0.00 33.63 5.87
5125 13142 2.802816 CTGTGTGTGCAAGTACCTCTTC 59.197 50.000 0.00 0.00 33.63 2.87
5193 13210 1.474077 GAACCGATCTTTGCCAGCATT 59.526 47.619 0.00 0.00 0.00 3.56
5299 13317 2.592102 ACACCCTTCACAATGATGCT 57.408 45.000 0.00 0.00 0.00 3.79
5308 13326 2.223805 CCTCAAGCAAAACACCCTTCAC 60.224 50.000 0.00 0.00 0.00 3.18
5371 13393 7.148086 GGCAATATTACACAAGATCACCAAGAA 60.148 37.037 0.00 0.00 0.00 2.52
5469 13492 0.676782 AGGCGGGAAAAAGATCACCG 60.677 55.000 0.00 0.00 46.78 4.94
5472 13495 1.340017 CCTGAGGCGGGAAAAAGATCA 60.340 52.381 0.00 0.00 29.82 2.92
5487 13511 3.672808 AGATCAACAGCTGTTTCCTGAG 58.327 45.455 29.23 16.70 35.83 3.35
5500 13525 5.298527 GGCATGAAATCATCAGAGATCAACA 59.701 40.000 0.00 0.00 42.53 3.33
5529 13554 0.716108 GAACAAGACATCGCAGGACG 59.284 55.000 0.00 0.00 45.62 4.79
5536 13561 2.549754 AGTTGCAAGGAACAAGACATCG 59.450 45.455 0.00 0.00 0.00 3.84
5659 13778 7.216494 TCATCTCATAAGATAAATGCCAACGA 58.784 34.615 0.00 0.00 40.38 3.85
5738 13866 2.161808 AGGAGTTCGTCGTCTGTACATG 59.838 50.000 0.00 0.00 0.00 3.21
5748 13876 1.986378 GACACAATGAGGAGTTCGTCG 59.014 52.381 0.00 0.00 33.77 5.12
5771 13900 1.663643 CCGTTGCACGCACATATAAGT 59.336 47.619 0.00 0.00 40.91 2.24
5840 14628 5.908341 ACGGTTGCTCTCCAAAAATAAAAA 58.092 33.333 0.00 0.00 34.68 1.94
5841 14629 5.067936 TGACGGTTGCTCTCCAAAAATAAAA 59.932 36.000 0.00 0.00 34.68 1.52
5842 14630 4.580995 TGACGGTTGCTCTCCAAAAATAAA 59.419 37.500 0.00 0.00 34.68 1.40
5864 14652 0.798776 AAGAAAACGCCGCTGATCTG 59.201 50.000 0.00 0.00 0.00 2.90
5873 14661 8.080417 ACTAGAAAGGAAAATAAAGAAAACGCC 58.920 33.333 0.00 0.00 0.00 5.68
5895 14683 6.917477 TGCACTGCTAAACAAAATTGAACTAG 59.083 34.615 1.98 0.00 0.00 2.57
6044 14849 9.909644 CTTTCTTGAGCTAAGTACACTAGTAAA 57.090 33.333 0.00 0.00 37.65 2.01
6046 14851 7.176165 TGCTTTCTTGAGCTAAGTACACTAGTA 59.824 37.037 0.00 0.00 43.11 1.82
6047 14852 6.015350 TGCTTTCTTGAGCTAAGTACACTAGT 60.015 38.462 0.00 0.00 43.11 2.57
6048 14853 6.390721 TGCTTTCTTGAGCTAAGTACACTAG 58.609 40.000 0.00 0.00 43.11 2.57
6049 14854 6.340962 TGCTTTCTTGAGCTAAGTACACTA 57.659 37.500 0.00 0.00 43.11 2.74
6050 14855 5.215252 TGCTTTCTTGAGCTAAGTACACT 57.785 39.130 0.00 0.00 43.11 3.55
6051 14856 5.639506 TCATGCTTTCTTGAGCTAAGTACAC 59.360 40.000 0.00 0.00 43.11 2.90
6052 14857 5.639506 GTCATGCTTTCTTGAGCTAAGTACA 59.360 40.000 0.00 0.00 43.11 2.90
6053 14858 5.220303 CGTCATGCTTTCTTGAGCTAAGTAC 60.220 44.000 0.00 0.00 43.11 2.73
6054 14859 4.864806 CGTCATGCTTTCTTGAGCTAAGTA 59.135 41.667 0.00 0.00 43.11 2.24
6055 14860 3.681897 CGTCATGCTTTCTTGAGCTAAGT 59.318 43.478 0.00 0.00 43.11 2.24
6056 14861 3.063180 CCGTCATGCTTTCTTGAGCTAAG 59.937 47.826 0.00 0.00 43.11 2.18
6057 14862 3.002791 CCGTCATGCTTTCTTGAGCTAA 58.997 45.455 0.00 0.00 43.11 3.09
6058 14863 2.621338 CCGTCATGCTTTCTTGAGCTA 58.379 47.619 0.00 0.00 43.11 3.32
6059 14864 1.446907 CCGTCATGCTTTCTTGAGCT 58.553 50.000 0.00 0.00 43.11 4.09
6060 14865 0.179179 GCCGTCATGCTTTCTTGAGC 60.179 55.000 0.00 0.00 43.00 4.26
6061 14866 1.129998 CTGCCGTCATGCTTTCTTGAG 59.870 52.381 0.00 0.00 0.00 3.02
6062 14867 1.159285 CTGCCGTCATGCTTTCTTGA 58.841 50.000 0.00 0.00 0.00 3.02
6063 14868 0.877071 ACTGCCGTCATGCTTTCTTG 59.123 50.000 0.00 0.00 0.00 3.02
6064 14869 0.877071 CACTGCCGTCATGCTTTCTT 59.123 50.000 0.00 0.00 0.00 2.52
6065 14870 0.250467 ACACTGCCGTCATGCTTTCT 60.250 50.000 0.00 0.00 0.00 2.52
6066 14871 0.593128 AACACTGCCGTCATGCTTTC 59.407 50.000 0.00 0.00 0.00 2.62
6067 14872 1.890876 TAACACTGCCGTCATGCTTT 58.109 45.000 0.00 0.00 0.00 3.51
6068 14873 1.890876 TTAACACTGCCGTCATGCTT 58.109 45.000 0.00 0.00 0.00 3.91
6069 14874 1.890876 TTTAACACTGCCGTCATGCT 58.109 45.000 0.00 0.00 0.00 3.79
6070 14875 2.697431 TTTTAACACTGCCGTCATGC 57.303 45.000 0.00 0.00 0.00 4.06
6071 14876 4.481930 TCTTTTTAACACTGCCGTCATG 57.518 40.909 0.00 0.00 0.00 3.07
6072 14877 5.508200 TTTCTTTTTAACACTGCCGTCAT 57.492 34.783 0.00 0.00 0.00 3.06
6073 14878 4.966965 TTTCTTTTTAACACTGCCGTCA 57.033 36.364 0.00 0.00 0.00 4.35
6074 14879 5.096849 TGTTTTCTTTTTAACACTGCCGTC 58.903 37.500 0.00 0.00 29.82 4.79
6075 14880 5.061920 TGTTTTCTTTTTAACACTGCCGT 57.938 34.783 0.00 0.00 29.82 5.68
6076 14881 5.746245 TCATGTTTTCTTTTTAACACTGCCG 59.254 36.000 0.00 0.00 37.11 5.69
6077 14882 6.291585 CGTCATGTTTTCTTTTTAACACTGCC 60.292 38.462 0.00 0.00 37.11 4.85
6078 14883 6.470877 TCGTCATGTTTTCTTTTTAACACTGC 59.529 34.615 0.00 0.00 37.11 4.40
6079 14884 7.483375 TGTCGTCATGTTTTCTTTTTAACACTG 59.517 33.333 0.00 0.00 37.11 3.66
6080 14885 7.531716 TGTCGTCATGTTTTCTTTTTAACACT 58.468 30.769 0.00 0.00 37.11 3.55
6081 14886 7.728580 TGTCGTCATGTTTTCTTTTTAACAC 57.271 32.000 0.00 0.00 37.11 3.32
6082 14887 8.184848 TGATGTCGTCATGTTTTCTTTTTAACA 58.815 29.630 0.00 0.00 38.50 2.41
6083 14888 8.469125 GTGATGTCGTCATGTTTTCTTTTTAAC 58.531 33.333 0.00 0.00 39.48 2.01
6084 14889 8.184848 TGTGATGTCGTCATGTTTTCTTTTTAA 58.815 29.630 0.00 0.00 39.48 1.52
6085 14890 7.642194 GTGTGATGTCGTCATGTTTTCTTTTTA 59.358 33.333 0.00 0.00 39.48 1.52
6086 14891 6.472163 GTGTGATGTCGTCATGTTTTCTTTTT 59.528 34.615 0.00 0.00 39.48 1.94
6087 14892 5.971202 GTGTGATGTCGTCATGTTTTCTTTT 59.029 36.000 0.00 0.00 39.48 2.27
6088 14893 5.510671 GTGTGATGTCGTCATGTTTTCTTT 58.489 37.500 0.00 0.00 39.48 2.52
6089 14894 4.318760 CGTGTGATGTCGTCATGTTTTCTT 60.319 41.667 0.00 0.00 39.48 2.52
6090 14895 3.184379 CGTGTGATGTCGTCATGTTTTCT 59.816 43.478 0.00 0.00 39.48 2.52
6091 14896 3.183574 TCGTGTGATGTCGTCATGTTTTC 59.816 43.478 0.00 0.00 39.48 2.29
6092 14897 3.059868 GTCGTGTGATGTCGTCATGTTTT 60.060 43.478 0.00 0.00 39.48 2.43
6093 14898 2.475111 GTCGTGTGATGTCGTCATGTTT 59.525 45.455 0.00 0.00 39.48 2.83
6094 14899 2.058798 GTCGTGTGATGTCGTCATGTT 58.941 47.619 0.00 0.00 39.48 2.71
6095 14900 1.698165 GTCGTGTGATGTCGTCATGT 58.302 50.000 0.00 0.00 39.48 3.21
6096 14901 0.635231 CGTCGTGTGATGTCGTCATG 59.365 55.000 0.00 0.00 39.48 3.07
6097 14902 0.456142 CCGTCGTGTGATGTCGTCAT 60.456 55.000 0.00 0.00 39.48 3.06
6098 14903 1.081708 CCGTCGTGTGATGTCGTCA 60.082 57.895 0.00 0.00 0.00 4.35
6099 14904 1.063951 GACCGTCGTGTGATGTCGTC 61.064 60.000 0.00 0.00 0.00 4.20
6100 14905 1.081641 GACCGTCGTGTGATGTCGT 60.082 57.895 0.00 0.00 0.00 4.34
6101 14906 1.800315 GGACCGTCGTGTGATGTCG 60.800 63.158 0.00 0.00 32.51 4.35
6102 14907 0.038526 AAGGACCGTCGTGTGATGTC 60.039 55.000 0.00 0.00 0.00 3.06
6103 14908 0.391597 AAAGGACCGTCGTGTGATGT 59.608 50.000 0.00 0.00 0.00 3.06
6104 14909 1.508632 AAAAGGACCGTCGTGTGATG 58.491 50.000 0.00 0.00 0.00 3.07
6105 14910 2.249844 AAAAAGGACCGTCGTGTGAT 57.750 45.000 0.00 0.00 0.00 3.06
6106 14911 3.764658 AAAAAGGACCGTCGTGTGA 57.235 47.368 0.00 0.00 0.00 3.58
6123 14928 5.696724 TGGAAGTTTTTCTCGCAAACAAAAA 59.303 32.000 0.19 0.00 36.71 1.94
6124 14929 5.230942 TGGAAGTTTTTCTCGCAAACAAAA 58.769 33.333 0.19 0.00 36.71 2.44
6125 14930 4.810790 TGGAAGTTTTTCTCGCAAACAAA 58.189 34.783 0.19 0.00 36.71 2.83
6126 14931 4.420168 CTGGAAGTTTTTCTCGCAAACAA 58.580 39.130 0.19 0.00 36.71 2.83
6127 14932 4.027572 CTGGAAGTTTTTCTCGCAAACA 57.972 40.909 0.19 0.00 36.71 2.83
6142 14947 3.423539 TGAAGGTGAATGGACTGGAAG 57.576 47.619 0.00 0.00 42.29 3.46
6143 14948 3.874383 TTGAAGGTGAATGGACTGGAA 57.126 42.857 0.00 0.00 0.00 3.53
6144 14949 3.330405 TGATTGAAGGTGAATGGACTGGA 59.670 43.478 0.00 0.00 0.00 3.86
6145 14950 3.689347 TGATTGAAGGTGAATGGACTGG 58.311 45.455 0.00 0.00 0.00 4.00
6146 14951 4.945543 TCATGATTGAAGGTGAATGGACTG 59.054 41.667 0.00 0.00 0.00 3.51
6147 14952 4.946157 GTCATGATTGAAGGTGAATGGACT 59.054 41.667 0.00 0.00 32.48 3.85
6148 14953 4.701651 TGTCATGATTGAAGGTGAATGGAC 59.298 41.667 0.00 0.00 32.48 4.02
6149 14954 4.920999 TGTCATGATTGAAGGTGAATGGA 58.079 39.130 0.00 0.00 32.48 3.41
6150 14955 5.648178 TTGTCATGATTGAAGGTGAATGG 57.352 39.130 0.00 0.00 32.48 3.16
6151 14956 7.764331 TGTATTGTCATGATTGAAGGTGAATG 58.236 34.615 0.00 0.00 32.48 2.67
6152 14957 7.613022 ACTGTATTGTCATGATTGAAGGTGAAT 59.387 33.333 0.00 0.00 32.48 2.57
6153 14958 6.942005 ACTGTATTGTCATGATTGAAGGTGAA 59.058 34.615 0.00 0.00 32.48 3.18
6154 14959 6.475504 ACTGTATTGTCATGATTGAAGGTGA 58.524 36.000 0.00 0.00 32.48 4.02
6155 14960 6.183360 GGACTGTATTGTCATGATTGAAGGTG 60.183 42.308 0.00 0.00 38.61 4.00
6156 14961 5.882557 GGACTGTATTGTCATGATTGAAGGT 59.117 40.000 0.00 0.00 38.61 3.50
6157 14962 6.118170 AGGACTGTATTGTCATGATTGAAGG 58.882 40.000 0.00 0.00 38.61 3.46
6158 14963 7.414873 CCAAGGACTGTATTGTCATGATTGAAG 60.415 40.741 0.00 0.00 38.61 3.02
6159 14964 6.375174 CCAAGGACTGTATTGTCATGATTGAA 59.625 38.462 0.00 0.00 38.61 2.69
6160 14965 5.882000 CCAAGGACTGTATTGTCATGATTGA 59.118 40.000 0.00 0.00 38.61 2.57
6161 14966 5.066893 CCCAAGGACTGTATTGTCATGATTG 59.933 44.000 0.00 0.00 38.61 2.67
6162 14967 5.044919 TCCCAAGGACTGTATTGTCATGATT 60.045 40.000 0.00 0.00 38.61 2.57
6163 14968 4.474651 TCCCAAGGACTGTATTGTCATGAT 59.525 41.667 0.00 0.00 38.61 2.45
6164 14969 3.843619 TCCCAAGGACTGTATTGTCATGA 59.156 43.478 0.00 0.00 38.61 3.07
6165 14970 4.220693 TCCCAAGGACTGTATTGTCATG 57.779 45.455 0.00 0.00 38.61 3.07
6166 14971 4.927267 TTCCCAAGGACTGTATTGTCAT 57.073 40.909 0.00 0.00 38.61 3.06
6167 14972 4.715534 TTTCCCAAGGACTGTATTGTCA 57.284 40.909 0.00 0.00 38.61 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.