Multiple sequence alignment - TraesCS5A01G387100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G387100 chr5A 100.000 5163 0 0 1 5163 584512753 584517915 0.000000e+00 9535.0
1 TraesCS5A01G387100 chr5D 93.398 4196 167 44 409 4530 464086466 464090625 0.000000e+00 6113.0
2 TraesCS5A01G387100 chr5D 88.201 517 29 12 4673 5163 464090644 464091154 5.760000e-164 588.0
3 TraesCS5A01G387100 chr5D 88.889 162 10 4 1 156 390263460 390263619 5.280000e-45 193.0
4 TraesCS5A01G387100 chr5B 92.264 4072 172 58 409 4397 571182248 571186259 0.000000e+00 5642.0
5 TraesCS5A01G387100 chr5B 89.630 405 22 10 4758 5162 571186466 571186850 9.980000e-137 497.0
6 TraesCS5A01G387100 chr5B 87.273 440 39 8 2874 3305 447877715 447877285 2.160000e-133 486.0
7 TraesCS5A01G387100 chr5B 89.617 183 19 0 160 342 571179991 571180173 3.110000e-57 233.0
8 TraesCS5A01G387100 chr5B 87.059 85 4 6 4446 4530 571186262 571186339 7.120000e-14 89.8
9 TraesCS5A01G387100 chr1B 93.066 923 48 6 861 1775 665427125 665426211 0.000000e+00 1336.0
10 TraesCS5A01G387100 chr4A 92.541 925 51 7 861 1775 672618395 672617479 0.000000e+00 1310.0
11 TraesCS5A01G387100 chr4A 92.108 925 54 8 861 1775 672580154 672579239 0.000000e+00 1286.0
12 TraesCS5A01G387100 chr4A 85.520 442 45 8 2874 3305 711819226 711818794 1.320000e-120 444.0
13 TraesCS5A01G387100 chr4A 85.068 442 46 9 2874 3305 711867310 711866879 2.860000e-117 433.0
14 TraesCS5A01G387100 chr4A 87.744 359 32 8 2479 2833 711818610 711818260 4.810000e-110 409.0
15 TraesCS5A01G387100 chr4A 87.744 359 32 8 2479 2833 711866695 711866345 4.810000e-110 409.0
16 TraesCS5A01G387100 chr3B 90.842 404 24 6 861 1256 787282941 787283339 3.540000e-146 529.0
17 TraesCS5A01G387100 chr4B 88.889 441 31 10 2874 3305 524141749 524142180 1.270000e-145 527.0
18 TraesCS5A01G387100 chr4B 87.982 441 34 11 2874 3305 524140786 524141216 2.150000e-138 503.0
19 TraesCS5A01G387100 chr4B 89.899 297 25 5 2540 2833 524140490 524140784 1.360000e-100 377.0
20 TraesCS5A01G387100 chr4B 86.313 358 34 8 2480 2833 524141401 524141747 4.880000e-100 375.0
21 TraesCS5A01G387100 chr2B 88.128 438 30 12 2874 3302 651652059 651652483 7.720000e-138 501.0
22 TraesCS5A01G387100 chr2B 87.187 359 33 8 2479 2833 651651708 651652057 3.750000e-106 396.0
23 TraesCS5A01G387100 chr2B 89.597 298 23 4 3016 3305 359279590 359279293 6.310000e-99 372.0
24 TraesCS5A01G387100 chr2B 89.562 297 26 5 2540 2833 651650797 651651091 6.310000e-99 372.0
25 TraesCS5A01G387100 chr6B 87.302 378 32 9 2936 3305 187093594 187093963 8.000000e-113 418.0
26 TraesCS5A01G387100 chr6B 87.430 358 33 7 2479 2833 187094147 187094495 8.050000e-108 401.0
27 TraesCS5A01G387100 chr3D 87.736 106 11 1 412 517 48658506 48658403 7.020000e-24 122.0
28 TraesCS5A01G387100 chr2D 92.857 84 6 0 409 492 39586726 39586809 7.020000e-24 122.0
29 TraesCS5A01G387100 chr2A 87.736 106 11 1 412 517 735227932 735227829 7.020000e-24 122.0
30 TraesCS5A01G387100 chr2A 89.286 56 6 0 5098 5153 406997487 406997432 2.580000e-08 71.3
31 TraesCS5A01G387100 chr2A 89.286 56 6 0 5098 5153 407125984 407125929 2.580000e-08 71.3
32 TraesCS5A01G387100 chrUn 91.667 84 7 0 409 492 45096289 45096372 3.270000e-22 117.0
33 TraesCS5A01G387100 chrUn 86.792 106 12 1 412 517 416116757 416116654 3.270000e-22 117.0
34 TraesCS5A01G387100 chr6A 91.667 84 7 0 409 492 155842136 155842219 3.270000e-22 117.0
35 TraesCS5A01G387100 chr1D 91.667 84 7 0 409 492 493799949 493800032 3.270000e-22 117.0
36 TraesCS5A01G387100 chr1A 91.667 84 7 0 409 492 334088355 334088438 3.270000e-22 117.0
37 TraesCS5A01G387100 chr7D 92.157 51 4 0 5103 5153 535563344 535563394 7.170000e-09 73.1
38 TraesCS5A01G387100 chr7A 92.157 51 4 0 5103 5153 618117503 618117453 7.170000e-09 73.1
39 TraesCS5A01G387100 chr7A 100.000 30 0 0 5 34 674303837 674303808 7.220000e-04 56.5
40 TraesCS5A01G387100 chr7B 95.455 44 2 0 5110 5153 577301658 577301701 2.580000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G387100 chr5A 584512753 584517915 5162 False 9535.00 9535 100.000000 1 5163 1 chr5A.!!$F1 5162
1 TraesCS5A01G387100 chr5D 464086466 464091154 4688 False 3350.50 6113 90.799500 409 5163 2 chr5D.!!$F2 4754
2 TraesCS5A01G387100 chr5B 571179991 571186850 6859 False 1615.45 5642 89.642500 160 5162 4 chr5B.!!$F1 5002
3 TraesCS5A01G387100 chr1B 665426211 665427125 914 True 1336.00 1336 93.066000 861 1775 1 chr1B.!!$R1 914
4 TraesCS5A01G387100 chr4A 672617479 672618395 916 True 1310.00 1310 92.541000 861 1775 1 chr4A.!!$R2 914
5 TraesCS5A01G387100 chr4A 672579239 672580154 915 True 1286.00 1286 92.108000 861 1775 1 chr4A.!!$R1 914
6 TraesCS5A01G387100 chr4A 711818260 711819226 966 True 426.50 444 86.632000 2479 3305 2 chr4A.!!$R3 826
7 TraesCS5A01G387100 chr4A 711866345 711867310 965 True 421.00 433 86.406000 2479 3305 2 chr4A.!!$R4 826
8 TraesCS5A01G387100 chr4B 524140490 524142180 1690 False 445.50 527 88.270750 2480 3305 4 chr4B.!!$F1 825
9 TraesCS5A01G387100 chr2B 651650797 651652483 1686 False 423.00 501 88.292333 2479 3302 3 chr2B.!!$F1 823
10 TraesCS5A01G387100 chr6B 187093594 187094495 901 False 409.50 418 87.366000 2479 3305 2 chr6B.!!$F1 826

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.109132 CAATGGGTTTGAAGCTCCGC 60.109 55.0 0.00 0.00 37.53 5.54 F
1424 3486 0.108019 TGCCTCAGAGCATATGCAGG 59.892 55.0 28.62 24.82 45.16 4.85 F
1497 3562 0.170561 TGCGCGAGTTTACTCCTCTC 59.829 55.0 12.10 0.00 39.79 3.20 F
1579 3648 0.689623 CCCTCAAGGTGCAGAAGAGT 59.310 55.0 0.00 0.00 0.00 3.24 F
2869 4944 0.250727 TTGGTTGCTACTGGGACTGC 60.251 55.0 0.00 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2104 4176 0.926155 CTGATTCATCCGTGTCAGCG 59.074 55.000 0.00 0.00 32.62 5.18 R
2681 4756 0.901124 CCTGCTACAAGAGGCTCAGT 59.099 55.000 18.26 16.59 0.00 3.41 R
2868 4943 1.080974 GCCATGACTTGTGCTGTGC 60.081 57.895 0.00 0.00 0.00 4.57 R
2872 4947 1.303888 CTGGGCCATGACTTGTGCT 60.304 57.895 6.72 0.00 0.00 4.40 R
4480 6886 0.034059 CGGAAGACAGCCTCACAAGT 59.966 55.000 0.00 0.00 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 4.047125 CCGTGGCCCACCCAGATT 62.047 66.667 8.62 0.00 46.54 2.40
37 38 2.035626 CGTGGCCCACCCAGATTT 59.964 61.111 8.62 0.00 46.54 2.17
38 39 2.046285 CGTGGCCCACCCAGATTTC 61.046 63.158 8.62 0.00 46.54 2.17
39 40 1.384191 GTGGCCCACCCAGATTTCT 59.616 57.895 1.17 0.00 46.54 2.52
40 41 0.967380 GTGGCCCACCCAGATTTCTG 60.967 60.000 1.17 0.39 46.54 3.02
41 42 2.054453 GGCCCACCCAGATTTCTGC 61.054 63.158 1.90 0.00 42.47 4.26
42 43 1.304381 GCCCACCCAGATTTCTGCA 60.304 57.895 1.90 0.00 42.47 4.41
43 44 0.899717 GCCCACCCAGATTTCTGCAA 60.900 55.000 1.90 0.00 42.47 4.08
44 45 1.856629 CCCACCCAGATTTCTGCAAT 58.143 50.000 1.90 0.00 42.47 3.56
45 46 2.181975 CCCACCCAGATTTCTGCAATT 58.818 47.619 1.90 0.00 42.47 2.32
46 47 2.568509 CCCACCCAGATTTCTGCAATTT 59.431 45.455 1.90 0.00 42.47 1.82
47 48 3.768757 CCCACCCAGATTTCTGCAATTTA 59.231 43.478 1.90 0.00 42.47 1.40
48 49 4.406649 CCCACCCAGATTTCTGCAATTTAT 59.593 41.667 1.90 0.00 42.47 1.40
49 50 5.598005 CCCACCCAGATTTCTGCAATTTATA 59.402 40.000 1.90 0.00 42.47 0.98
50 51 6.461509 CCCACCCAGATTTCTGCAATTTATAC 60.462 42.308 1.90 0.00 42.47 1.47
51 52 6.096705 CCACCCAGATTTCTGCAATTTATACA 59.903 38.462 1.90 0.00 42.47 2.29
52 53 6.974622 CACCCAGATTTCTGCAATTTATACAC 59.025 38.462 1.90 0.00 42.47 2.90
53 54 6.891908 ACCCAGATTTCTGCAATTTATACACT 59.108 34.615 1.90 0.00 42.47 3.55
54 55 7.148018 ACCCAGATTTCTGCAATTTATACACTG 60.148 37.037 1.90 0.00 42.47 3.66
55 56 7.148018 CCCAGATTTCTGCAATTTATACACTGT 60.148 37.037 1.90 0.00 42.47 3.55
56 57 8.246180 CCAGATTTCTGCAATTTATACACTGTT 58.754 33.333 1.90 0.00 42.47 3.16
57 58 9.630098 CAGATTTCTGCAATTTATACACTGTTT 57.370 29.630 0.00 0.00 37.15 2.83
77 78 3.603965 TTTTTACTTCTGGGCCTTGGA 57.396 42.857 4.53 0.00 0.00 3.53
78 79 3.603965 TTTTACTTCTGGGCCTTGGAA 57.396 42.857 4.53 6.06 0.00 3.53
79 80 2.579410 TTACTTCTGGGCCTTGGAAC 57.421 50.000 4.53 0.00 0.00 3.62
80 81 1.440618 TACTTCTGGGCCTTGGAACA 58.559 50.000 4.53 0.00 0.00 3.18
81 82 0.178990 ACTTCTGGGCCTTGGAACAC 60.179 55.000 4.53 0.00 39.29 3.32
82 83 0.895559 CTTCTGGGCCTTGGAACACC 60.896 60.000 4.53 0.00 39.29 4.16
83 84 1.650242 TTCTGGGCCTTGGAACACCA 61.650 55.000 4.53 0.00 39.29 4.17
84 85 1.152567 CTGGGCCTTGGAACACCAA 60.153 57.895 4.53 0.00 39.29 3.67
85 86 1.456705 TGGGCCTTGGAACACCAAC 60.457 57.895 4.53 0.00 39.29 3.77
86 87 2.207229 GGGCCTTGGAACACCAACC 61.207 63.158 0.84 0.00 39.29 3.77
87 88 2.207229 GGCCTTGGAACACCAACCC 61.207 63.158 0.00 0.00 39.29 4.11
88 89 1.456705 GCCTTGGAACACCAACCCA 60.457 57.895 0.00 0.00 39.29 4.51
89 90 1.744320 GCCTTGGAACACCAACCCAC 61.744 60.000 0.00 0.00 39.29 4.61
90 91 0.396417 CCTTGGAACACCAACCCACA 60.396 55.000 0.00 0.00 39.29 4.17
91 92 1.479709 CTTGGAACACCAACCCACAA 58.520 50.000 0.00 0.00 39.29 3.33
92 93 1.408702 CTTGGAACACCAACCCACAAG 59.591 52.381 0.00 0.00 39.29 3.16
93 94 0.626382 TGGAACACCAACCCACAAGA 59.374 50.000 0.00 0.00 0.00 3.02
94 95 1.216678 TGGAACACCAACCCACAAGAT 59.783 47.619 0.00 0.00 0.00 2.40
95 96 1.613437 GGAACACCAACCCACAAGATG 59.387 52.381 0.00 0.00 0.00 2.90
96 97 2.306847 GAACACCAACCCACAAGATGT 58.693 47.619 0.00 0.00 0.00 3.06
97 98 2.452600 ACACCAACCCACAAGATGTT 57.547 45.000 0.00 0.00 0.00 2.71
98 99 2.745968 ACACCAACCCACAAGATGTTT 58.254 42.857 0.00 0.00 0.00 2.83
99 100 3.103742 ACACCAACCCACAAGATGTTTT 58.896 40.909 0.00 0.00 0.00 2.43
100 101 3.132111 ACACCAACCCACAAGATGTTTTC 59.868 43.478 0.00 0.00 0.00 2.29
101 102 2.698274 ACCAACCCACAAGATGTTTTCC 59.302 45.455 0.00 0.00 0.00 3.13
102 103 2.037121 CCAACCCACAAGATGTTTTCCC 59.963 50.000 0.00 0.00 0.00 3.97
103 104 2.965147 CAACCCACAAGATGTTTTCCCT 59.035 45.455 0.00 0.00 0.00 4.20
104 105 2.876581 ACCCACAAGATGTTTTCCCTC 58.123 47.619 0.00 0.00 0.00 4.30
105 106 2.447047 ACCCACAAGATGTTTTCCCTCT 59.553 45.455 0.00 0.00 0.00 3.69
106 107 2.821969 CCCACAAGATGTTTTCCCTCTG 59.178 50.000 0.00 0.00 0.00 3.35
107 108 3.490348 CCACAAGATGTTTTCCCTCTGT 58.510 45.455 0.00 0.00 0.00 3.41
108 109 3.891366 CCACAAGATGTTTTCCCTCTGTT 59.109 43.478 0.00 0.00 0.00 3.16
109 110 4.342092 CCACAAGATGTTTTCCCTCTGTTT 59.658 41.667 0.00 0.00 0.00 2.83
110 111 5.284079 CACAAGATGTTTTCCCTCTGTTTG 58.716 41.667 0.00 0.00 0.00 2.93
111 112 4.342092 ACAAGATGTTTTCCCTCTGTTTGG 59.658 41.667 0.00 0.00 0.00 3.28
112 113 2.893489 AGATGTTTTCCCTCTGTTTGGC 59.107 45.455 0.00 0.00 0.00 4.52
113 114 1.408969 TGTTTTCCCTCTGTTTGGCC 58.591 50.000 0.00 0.00 0.00 5.36
114 115 0.313987 GTTTTCCCTCTGTTTGGCCG 59.686 55.000 0.00 0.00 0.00 6.13
115 116 0.825840 TTTTCCCTCTGTTTGGCCGG 60.826 55.000 0.00 0.00 0.00 6.13
116 117 3.860930 TTCCCTCTGTTTGGCCGGC 62.861 63.158 21.18 21.18 0.00 6.13
119 120 4.659172 CTCTGTTTGGCCGGCCCA 62.659 66.667 41.75 30.62 43.51 5.36
120 121 4.659172 TCTGTTTGGCCGGCCCAG 62.659 66.667 41.75 36.60 46.39 4.45
134 135 3.762247 CCAGCCCGCCCAACAATG 61.762 66.667 0.00 0.00 0.00 2.82
146 147 3.030668 CCAACAATGGGTTTGAAGCTC 57.969 47.619 0.00 0.00 43.51 4.09
147 148 2.289010 CCAACAATGGGTTTGAAGCTCC 60.289 50.000 0.00 0.00 43.51 4.70
148 149 1.247567 ACAATGGGTTTGAAGCTCCG 58.752 50.000 0.00 0.00 38.76 4.63
149 150 0.109132 CAATGGGTTTGAAGCTCCGC 60.109 55.000 0.00 0.00 37.53 5.54
150 151 1.250840 AATGGGTTTGAAGCTCCGCC 61.251 55.000 0.00 0.00 0.00 6.13
151 152 2.282180 GGGTTTGAAGCTCCGCCA 60.282 61.111 0.00 0.00 0.00 5.69
152 153 2.626780 GGGTTTGAAGCTCCGCCAC 61.627 63.158 0.00 0.00 0.00 5.01
153 154 1.600916 GGTTTGAAGCTCCGCCACT 60.601 57.895 0.00 0.00 0.00 4.00
154 155 1.576421 GTTTGAAGCTCCGCCACTG 59.424 57.895 0.00 0.00 0.00 3.66
155 156 2.260869 TTTGAAGCTCCGCCACTGC 61.261 57.895 0.00 0.00 0.00 4.40
156 157 4.704833 TGAAGCTCCGCCACTGCC 62.705 66.667 0.00 0.00 0.00 4.85
157 158 4.400961 GAAGCTCCGCCACTGCCT 62.401 66.667 0.00 0.00 0.00 4.75
158 159 3.909086 GAAGCTCCGCCACTGCCTT 62.909 63.158 0.00 0.00 0.00 4.35
159 160 4.711949 AGCTCCGCCACTGCCTTG 62.712 66.667 0.00 0.00 0.00 3.61
161 162 2.281761 CTCCGCCACTGCCTTGTT 60.282 61.111 0.00 0.00 0.00 2.83
162 163 1.003839 CTCCGCCACTGCCTTGTTA 60.004 57.895 0.00 0.00 0.00 2.41
163 164 1.003839 TCCGCCACTGCCTTGTTAG 60.004 57.895 0.00 0.00 0.00 2.34
164 165 2.040544 CCGCCACTGCCTTGTTAGG 61.041 63.158 0.00 0.00 45.02 2.69
188 189 1.075601 AGAGCCCAACCTCCATTGAA 58.924 50.000 0.00 0.00 32.17 2.69
244 245 0.388520 GGCGGACAATCCTTTTGCAC 60.389 55.000 0.00 0.00 33.30 4.57
246 247 1.666888 GCGGACAATCCTTTTGCACTG 60.667 52.381 0.00 0.00 33.30 3.66
252 253 1.831580 ATCCTTTTGCACTGGAGAGC 58.168 50.000 7.45 0.00 32.95 4.09
254 255 1.208614 CTTTTGCACTGGAGAGCGC 59.791 57.895 0.00 0.00 34.29 5.92
255 256 1.509644 CTTTTGCACTGGAGAGCGCA 61.510 55.000 11.47 0.00 34.29 6.09
256 257 0.890542 TTTTGCACTGGAGAGCGCAT 60.891 50.000 11.47 0.00 34.29 4.73
268 269 4.137879 GCGCATCCAGAGCTCAAT 57.862 55.556 17.77 3.37 40.21 2.57
274 275 2.224572 GCATCCAGAGCTCAATCTCCAT 60.225 50.000 17.77 0.00 33.66 3.41
329 330 1.209127 CGCCCTTCGAAAAATGCGT 59.791 52.632 17.03 0.00 41.67 5.24
332 333 1.735571 GCCCTTCGAAAAATGCGTCTA 59.264 47.619 0.00 0.00 0.00 2.59
344 345 3.857764 CGTCTATTCCGCTCCCCT 58.142 61.111 0.00 0.00 0.00 4.79
345 346 3.031916 CGTCTATTCCGCTCCCCTA 57.968 57.895 0.00 0.00 0.00 3.53
346 347 0.882474 CGTCTATTCCGCTCCCCTAG 59.118 60.000 0.00 0.00 0.00 3.02
347 348 1.258676 GTCTATTCCGCTCCCCTAGG 58.741 60.000 0.06 0.06 0.00 3.02
348 349 0.114560 TCTATTCCGCTCCCCTAGGG 59.885 60.000 22.25 22.25 46.11 3.53
368 369 5.900865 GGGAGAAAGTATCGTATCCCTAG 57.099 47.826 0.73 0.00 42.64 3.02
370 371 4.705991 GGAGAAAGTATCGTATCCCTAGGG 59.294 50.000 23.22 23.22 0.00 3.53
383 384 2.572104 TCCCTAGGGAGAAAGCAGAAAC 59.428 50.000 27.73 0.00 39.76 2.78
386 387 2.278332 AGGGAGAAAGCAGAAACCAC 57.722 50.000 0.00 0.00 0.00 4.16
388 389 1.882623 GGGAGAAAGCAGAAACCACAG 59.117 52.381 0.00 0.00 0.00 3.66
389 390 2.576615 GGAGAAAGCAGAAACCACAGT 58.423 47.619 0.00 0.00 0.00 3.55
391 392 3.206150 GAGAAAGCAGAAACCACAGTCA 58.794 45.455 0.00 0.00 0.00 3.41
393 394 3.567164 AGAAAGCAGAAACCACAGTCATG 59.433 43.478 0.00 0.00 0.00 3.07
394 395 1.901591 AGCAGAAACCACAGTCATGG 58.098 50.000 0.00 0.00 46.10 3.66
395 396 0.883833 GCAGAAACCACAGTCATGGG 59.116 55.000 0.00 0.00 44.81 4.00
454 2468 3.054065 CCTAGGGAGAAAGCAGAAACCAT 60.054 47.826 0.00 0.00 0.00 3.55
455 2469 3.532641 AGGGAGAAAGCAGAAACCATT 57.467 42.857 0.00 0.00 0.00 3.16
487 2501 2.233922 GGTTCGATCTCTCACCCAAAGA 59.766 50.000 0.00 0.00 0.00 2.52
492 2506 6.294361 TCGATCTCTCACCCAAAGAAATTA 57.706 37.500 0.00 0.00 0.00 1.40
500 2514 6.041523 TCTCACCCAAAGAAATTAAAGGGTTG 59.958 38.462 0.00 0.00 46.99 3.77
502 2516 5.071115 CACCCAAAGAAATTAAAGGGTTGGA 59.929 40.000 0.00 0.00 46.99 3.53
503 2517 5.306937 ACCCAAAGAAATTAAAGGGTTGGAG 59.693 40.000 0.00 0.00 46.99 3.86
505 2519 5.542251 CCAAAGAAATTAAAGGGTTGGAGGA 59.458 40.000 0.00 0.00 36.90 3.71
524 2542 3.340357 AGGATTATACCCCTAGTCCTCCC 59.660 52.174 0.00 0.00 33.82 4.30
528 2546 1.400941 TACCCCTAGTCCTCCCAGTT 58.599 55.000 0.00 0.00 0.00 3.16
542 2560 2.428530 TCCCAGTTCATCAGAGATCACG 59.571 50.000 0.00 0.00 0.00 4.35
611 2638 4.038522 GTCAGTCTAGCAAGATGCCTATGA 59.961 45.833 0.00 0.00 46.52 2.15
616 2643 3.851458 AGCAAGATGCCTATGATGTCA 57.149 42.857 0.00 0.00 46.52 3.58
659 2686 3.125316 CAGCTCAATTTCACGAAGGTACC 59.875 47.826 2.73 2.73 0.00 3.34
662 2689 1.735571 CAATTTCACGAAGGTACCCGG 59.264 52.381 8.74 0.00 0.00 5.73
663 2690 0.392060 ATTTCACGAAGGTACCCGGC 60.392 55.000 8.74 0.00 0.00 6.13
666 2693 4.060038 ACGAAGGTACCCGGCGTG 62.060 66.667 19.49 0.00 36.97 5.34
670 2697 2.720358 GAAGGTACCCGGCGTGTGTT 62.720 60.000 8.74 0.00 0.00 3.32
672 2699 2.319841 GGTACCCGGCGTGTGTTTC 61.320 63.158 4.97 0.00 0.00 2.78
675 2702 2.438951 TACCCGGCGTGTGTTTCTCC 62.439 60.000 4.97 0.00 0.00 3.71
720 2754 8.474025 CAGATTAGTTAGTCTGTCCTCTCAAAT 58.526 37.037 4.11 0.00 35.91 2.32
721 2755 9.702253 AGATTAGTTAGTCTGTCCTCTCAAATA 57.298 33.333 0.00 0.00 0.00 1.40
722 2756 9.738832 GATTAGTTAGTCTGTCCTCTCAAATAC 57.261 37.037 0.00 0.00 0.00 1.89
757 2791 7.492352 ACAATACGTCAAGGATTAATTAGCC 57.508 36.000 0.00 0.00 30.63 3.93
763 2797 6.423001 ACGTCAAGGATTAATTAGCCGTATTC 59.577 38.462 0.00 0.00 0.00 1.75
767 2801 9.403583 TCAAGGATTAATTAGCCGTATTCTTTT 57.596 29.630 0.00 0.00 0.00 2.27
851 2886 1.757340 GGTCCAGTCGTAGGGGAGG 60.757 68.421 0.00 0.00 0.00 4.30
852 2887 1.757340 GTCCAGTCGTAGGGGAGGG 60.757 68.421 0.00 0.00 0.00 4.30
1313 3364 0.393077 CGCCTCGATATCCCCTGTTT 59.607 55.000 0.00 0.00 0.00 2.83
1314 3365 1.873903 CGCCTCGATATCCCCTGTTTG 60.874 57.143 0.00 0.00 0.00 2.93
1315 3366 1.543429 GCCTCGATATCCCCTGTTTGG 60.543 57.143 0.00 0.00 0.00 3.28
1350 3411 7.736447 AGGATTCGCAAAGATATTTAGGAAG 57.264 36.000 4.66 0.00 0.00 3.46
1424 3486 0.108019 TGCCTCAGAGCATATGCAGG 59.892 55.000 28.62 24.82 45.16 4.85
1481 3546 1.270518 CCTCAATCCTATCACCCTGCG 60.271 57.143 0.00 0.00 0.00 5.18
1497 3562 0.170561 TGCGCGAGTTTACTCCTCTC 59.829 55.000 12.10 0.00 39.79 3.20
1579 3648 0.689623 CCCTCAAGGTGCAGAAGAGT 59.310 55.000 0.00 0.00 0.00 3.24
1696 3765 1.581934 TTGACCACTTCAAGCACTCG 58.418 50.000 0.00 0.00 39.45 4.18
1780 3852 5.066634 CCTGATCAAGTACACTGACTATCGT 59.933 44.000 0.00 0.00 0.00 3.73
1783 3855 4.077108 TCAAGTACACTGACTATCGTGGT 58.923 43.478 0.00 0.00 35.51 4.16
1795 3867 0.828022 ATCGTGGTATTCCGCTTCCA 59.172 50.000 0.15 0.00 41.65 3.53
1873 3945 4.265073 AGCTTTCCATTATCCACACTGAC 58.735 43.478 0.00 0.00 0.00 3.51
2104 4176 2.042639 AATGGGGCAGTGGCATCC 60.043 61.111 19.48 11.84 43.71 3.51
2128 4200 3.785486 TGACACGGATGAATCAGATGAC 58.215 45.455 0.00 0.00 0.00 3.06
2230 4302 2.834549 CAGCAAAGGGACTAGGAAGAGA 59.165 50.000 0.00 0.00 38.49 3.10
2317 4389 4.511527 AGCAGTTCACAAGTGATATCCAG 58.488 43.478 3.43 0.00 39.64 3.86
2338 4410 2.945668 GACAAGGCAATACAGATGTCCC 59.054 50.000 0.00 0.00 32.96 4.46
2374 4446 3.491792 GCTCCAAGTACTCTACATCTGCC 60.492 52.174 0.00 0.00 0.00 4.85
2594 4666 4.421948 ACTTAAGAAAGGTAGTCATCGCG 58.578 43.478 10.09 0.00 37.01 5.87
2633 4705 4.100035 TCTGATACCTACATTCCAGCACTG 59.900 45.833 0.00 0.00 0.00 3.66
2671 4743 5.584551 ACCCTTCATTTACTTCTCCAAGT 57.415 39.130 0.00 0.00 45.39 3.16
2676 4751 9.025041 CCCTTCATTTACTTCTCCAAGTTATTT 57.975 33.333 0.00 0.00 40.16 1.40
2677 4752 9.846248 CCTTCATTTACTTCTCCAAGTTATTTG 57.154 33.333 0.00 0.00 40.16 2.32
2842 4917 2.084546 GCTTGGGCTTGAAAGACGTAT 58.915 47.619 0.00 0.00 33.77 3.06
2867 4942 1.774856 AGTTTGGTTGCTACTGGGACT 59.225 47.619 0.00 0.00 0.00 3.85
2868 4943 1.880027 GTTTGGTTGCTACTGGGACTG 59.120 52.381 0.00 0.00 0.00 3.51
2869 4944 0.250727 TTGGTTGCTACTGGGACTGC 60.251 55.000 0.00 0.00 0.00 4.40
2870 4945 1.374947 GGTTGCTACTGGGACTGCA 59.625 57.895 0.00 0.00 0.00 4.41
2871 4946 0.955919 GGTTGCTACTGGGACTGCAC 60.956 60.000 0.00 0.00 35.01 4.57
2872 4947 0.250295 GTTGCTACTGGGACTGCACA 60.250 55.000 0.00 0.00 35.01 4.57
2891 4966 1.604593 GCACAAGTCATGGCCCAGT 60.605 57.895 0.00 0.00 0.00 4.00
2970 5052 9.188588 CCAGCTGCACTTTATGAAAATATAATG 57.811 33.333 8.66 0.00 0.00 1.90
3003 5085 4.726416 CAGACAATGCTATGGTGTCAAAC 58.274 43.478 5.88 0.00 43.34 2.93
3004 5086 4.456911 CAGACAATGCTATGGTGTCAAACT 59.543 41.667 5.88 0.00 43.34 2.66
3005 5087 4.456911 AGACAATGCTATGGTGTCAAACTG 59.543 41.667 5.88 0.00 43.34 3.16
3006 5088 4.144297 ACAATGCTATGGTGTCAAACTGT 58.856 39.130 0.00 0.00 0.00 3.55
3007 5089 4.216257 ACAATGCTATGGTGTCAAACTGTC 59.784 41.667 0.00 0.00 0.00 3.51
3008 5090 3.483808 TGCTATGGTGTCAAACTGTCA 57.516 42.857 0.00 0.00 0.00 3.58
3009 5091 3.402110 TGCTATGGTGTCAAACTGTCAG 58.598 45.455 0.00 0.00 0.00 3.51
3042 5124 9.023962 TCTGGTTATGAAGCTGTCATTTTAATT 57.976 29.630 14.02 0.00 45.13 1.40
3067 5149 2.563471 ATAGTCACCGTTCGCTCTTC 57.437 50.000 0.00 0.00 0.00 2.87
3314 5412 7.617041 ATCCTTTATGCTGTTTGTTCTAGTC 57.383 36.000 0.00 0.00 0.00 2.59
3394 5768 7.655490 ACTCAAACTCTTTGGAATCTCATTTG 58.345 34.615 0.00 0.00 40.98 2.32
3409 5783 8.859236 AATCTCATTTGTGAAGATCTCTTTGA 57.141 30.769 0.00 0.00 36.11 2.69
3443 5817 9.521503 TTCTGAGTAATCTCTTTATGATTGTCG 57.478 33.333 0.00 0.00 40.98 4.35
3453 5827 7.606073 TCTCTTTATGATTGTCGACCATGAAAA 59.394 33.333 14.12 6.99 0.00 2.29
3537 5925 8.514330 AATCAAATCGTCTACTCTTACTCTCT 57.486 34.615 0.00 0.00 0.00 3.10
3550 5938 7.565680 ACTCTTACTCTCTTTTTGGAGTTCAA 58.434 34.615 0.00 0.00 42.06 2.69
3823 6212 3.503748 GCAAGGTGCTTGTTGAGAAGTAT 59.496 43.478 0.00 0.00 42.77 2.12
3826 6215 4.973168 AGGTGCTTGTTGAGAAGTATGAA 58.027 39.130 0.00 0.00 0.00 2.57
3901 6290 2.506438 GTTCCCGAGAAGCGTCCG 60.506 66.667 0.00 0.00 38.67 4.79
4021 6410 1.956477 GCTCCAGAGAACAAAGGCAAA 59.044 47.619 0.00 0.00 0.00 3.68
4030 6419 6.016443 CAGAGAACAAAGGCAAAGAGAAAGAT 60.016 38.462 0.00 0.00 0.00 2.40
4101 6490 1.396301 CGCTTCTTCATCCAAGACAGC 59.604 52.381 0.00 0.00 41.13 4.40
4118 6507 1.821332 GCGAAGGATCCCCAAGCAG 60.821 63.158 8.55 0.00 33.88 4.24
4120 6509 1.915078 CGAAGGATCCCCAAGCAGGT 61.915 60.000 8.55 0.00 34.66 4.00
4183 6572 1.066430 GGTGCCATTCGGTCTACAAGA 60.066 52.381 0.00 0.00 33.28 3.02
4184 6573 2.271800 GTGCCATTCGGTCTACAAGAG 58.728 52.381 0.00 0.00 33.28 2.85
4193 6583 2.729882 CGGTCTACAAGAGTCGGTTTTG 59.270 50.000 0.00 0.00 0.00 2.44
4246 6652 6.357367 AGGTTTGTGATGTGTTAGGATATCC 58.643 40.000 14.41 14.41 0.00 2.59
4279 6685 4.744795 AAAGAGTAGTAGGCCAGACATG 57.255 45.455 5.01 0.00 0.00 3.21
4346 6752 1.244019 CGGCCCCTGACCTTTTTCAG 61.244 60.000 0.00 0.00 42.46 3.02
4479 6885 2.406452 GAAAGGCGCTGTGGGTTGTG 62.406 60.000 7.64 0.00 0.00 3.33
4480 6886 2.902423 AAAGGCGCTGTGGGTTGTGA 62.902 55.000 7.64 0.00 0.00 3.58
4481 6887 3.660111 GGCGCTGTGGGTTGTGAC 61.660 66.667 7.64 0.00 0.00 3.67
4482 6888 2.591715 GCGCTGTGGGTTGTGACT 60.592 61.111 0.00 0.00 0.00 3.41
4483 6889 2.186826 GCGCTGTGGGTTGTGACTT 61.187 57.895 0.00 0.00 0.00 3.01
4484 6890 1.648720 CGCTGTGGGTTGTGACTTG 59.351 57.895 0.00 0.00 0.00 3.16
4485 6891 1.095228 CGCTGTGGGTTGTGACTTGT 61.095 55.000 0.00 0.00 0.00 3.16
4526 6932 5.248477 AGGCCTGAGATACTTTTTACTGTCA 59.752 40.000 3.11 0.00 0.00 3.58
4530 6936 7.173390 GCCTGAGATACTTTTTACTGTCAGTTT 59.827 37.037 11.54 0.00 0.00 2.66
4531 6937 9.057089 CCTGAGATACTTTTTACTGTCAGTTTT 57.943 33.333 11.54 0.00 0.00 2.43
4532 6938 9.869844 CTGAGATACTTTTTACTGTCAGTTTTG 57.130 33.333 11.54 0.78 0.00 2.44
4534 6940 7.649057 AGATACTTTTTACTGTCAGTTTTGCC 58.351 34.615 11.54 0.00 0.00 4.52
4535 6941 5.652994 ACTTTTTACTGTCAGTTTTGCCA 57.347 34.783 11.54 0.00 0.00 4.92
4537 6943 6.099341 ACTTTTTACTGTCAGTTTTGCCAAG 58.901 36.000 11.54 7.86 0.00 3.61
4538 6944 3.708563 TTACTGTCAGTTTTGCCAAGC 57.291 42.857 11.54 0.00 0.00 4.01
4539 6945 1.473258 ACTGTCAGTTTTGCCAAGCA 58.527 45.000 0.00 0.00 36.47 3.91
4540 6946 1.134946 ACTGTCAGTTTTGCCAAGCAC 59.865 47.619 0.00 0.00 38.71 4.40
4541 6947 1.134753 CTGTCAGTTTTGCCAAGCACA 59.865 47.619 0.00 0.00 38.71 4.57
4542 6948 1.755959 TGTCAGTTTTGCCAAGCACAT 59.244 42.857 0.00 0.00 38.71 3.21
4543 6949 2.129607 GTCAGTTTTGCCAAGCACATG 58.870 47.619 0.00 0.00 38.71 3.21
4544 6950 0.863144 CAGTTTTGCCAAGCACATGC 59.137 50.000 0.00 0.00 38.71 4.06
4554 6960 3.788817 GCACATGCGCGGTAAGTA 58.211 55.556 8.83 0.00 0.00 2.24
4555 6961 2.307363 GCACATGCGCGGTAAGTAT 58.693 52.632 8.83 0.00 0.00 2.12
4556 6962 0.655733 GCACATGCGCGGTAAGTATT 59.344 50.000 8.83 0.00 0.00 1.89
4557 6963 1.332904 GCACATGCGCGGTAAGTATTC 60.333 52.381 8.83 0.00 0.00 1.75
4558 6964 1.260561 CACATGCGCGGTAAGTATTCC 59.739 52.381 8.83 0.00 0.00 3.01
4559 6965 1.134640 ACATGCGCGGTAAGTATTCCA 60.135 47.619 8.83 0.00 0.00 3.53
4560 6966 1.260561 CATGCGCGGTAAGTATTCCAC 59.739 52.381 8.83 0.00 0.00 4.02
4561 6967 0.246910 TGCGCGGTAAGTATTCCACA 59.753 50.000 8.83 0.00 0.00 4.17
4562 6968 1.134640 TGCGCGGTAAGTATTCCACAT 60.135 47.619 8.83 0.00 0.00 3.21
4563 6969 1.525619 GCGCGGTAAGTATTCCACATC 59.474 52.381 8.83 0.00 0.00 3.06
4564 6970 2.132762 CGCGGTAAGTATTCCACATCC 58.867 52.381 0.00 0.00 0.00 3.51
4565 6971 2.132762 GCGGTAAGTATTCCACATCCG 58.867 52.381 0.00 0.00 38.77 4.18
4566 6972 2.223876 GCGGTAAGTATTCCACATCCGA 60.224 50.000 0.00 0.00 38.36 4.55
4567 6973 3.639538 CGGTAAGTATTCCACATCCGAG 58.360 50.000 0.00 0.00 38.36 4.63
4568 6974 3.067742 CGGTAAGTATTCCACATCCGAGT 59.932 47.826 0.00 0.00 38.36 4.18
4569 6975 4.618965 GGTAAGTATTCCACATCCGAGTC 58.381 47.826 0.00 0.00 0.00 3.36
4570 6976 3.821421 AAGTATTCCACATCCGAGTCC 57.179 47.619 0.00 0.00 0.00 3.85
4571 6977 3.033659 AGTATTCCACATCCGAGTCCT 57.966 47.619 0.00 0.00 0.00 3.85
4572 6978 4.180377 AGTATTCCACATCCGAGTCCTA 57.820 45.455 0.00 0.00 0.00 2.94
4573 6979 4.742012 AGTATTCCACATCCGAGTCCTAT 58.258 43.478 0.00 0.00 0.00 2.57
4574 6980 4.524714 AGTATTCCACATCCGAGTCCTATG 59.475 45.833 0.00 0.00 0.00 2.23
4575 6981 2.454336 TCCACATCCGAGTCCTATGT 57.546 50.000 0.25 0.25 34.22 2.29
4576 6982 2.307768 TCCACATCCGAGTCCTATGTC 58.692 52.381 2.73 0.00 31.60 3.06
4577 6983 2.091830 TCCACATCCGAGTCCTATGTCT 60.092 50.000 2.73 0.00 31.60 3.41
4578 6984 2.695666 CCACATCCGAGTCCTATGTCTT 59.304 50.000 2.73 0.00 31.60 3.01
4579 6985 3.889538 CCACATCCGAGTCCTATGTCTTA 59.110 47.826 2.73 0.00 31.60 2.10
4580 6986 4.261656 CCACATCCGAGTCCTATGTCTTAC 60.262 50.000 2.73 0.00 31.60 2.34
4581 6987 4.338400 CACATCCGAGTCCTATGTCTTACA 59.662 45.833 2.73 0.00 31.60 2.41
4582 6988 4.338682 ACATCCGAGTCCTATGTCTTACAC 59.661 45.833 0.25 0.00 0.00 2.90
4583 6989 2.941064 TCCGAGTCCTATGTCTTACACG 59.059 50.000 0.00 0.00 0.00 4.49
4584 6990 2.033049 CCGAGTCCTATGTCTTACACGG 59.967 54.545 0.00 0.00 39.15 4.94
4585 6991 2.681848 CGAGTCCTATGTCTTACACGGT 59.318 50.000 0.00 0.00 0.00 4.83
4586 6992 3.487042 CGAGTCCTATGTCTTACACGGTG 60.487 52.174 6.58 6.58 0.00 4.94
4587 6993 3.693085 GAGTCCTATGTCTTACACGGTGA 59.307 47.826 16.29 0.00 0.00 4.02
4588 6994 4.279145 AGTCCTATGTCTTACACGGTGAT 58.721 43.478 16.29 1.80 0.00 3.06
4589 6995 4.338682 AGTCCTATGTCTTACACGGTGATC 59.661 45.833 16.29 1.11 0.00 2.92
4590 6996 4.338682 GTCCTATGTCTTACACGGTGATCT 59.661 45.833 16.29 0.00 0.00 2.75
4591 6997 4.338400 TCCTATGTCTTACACGGTGATCTG 59.662 45.833 16.29 2.31 0.00 2.90
4592 6998 4.098044 CCTATGTCTTACACGGTGATCTGT 59.902 45.833 16.29 0.00 0.00 3.41
4597 7003 4.284123 CACGGTGATCTGTGTGGG 57.716 61.111 0.74 0.00 43.64 4.61
4598 7004 1.371183 CACGGTGATCTGTGTGGGT 59.629 57.895 0.74 0.00 43.64 4.51
4599 7005 0.606096 CACGGTGATCTGTGTGGGTA 59.394 55.000 0.74 0.00 43.64 3.69
4600 7006 1.207089 CACGGTGATCTGTGTGGGTAT 59.793 52.381 0.74 0.00 43.64 2.73
4601 7007 1.906574 ACGGTGATCTGTGTGGGTATT 59.093 47.619 0.00 0.00 0.00 1.89
4602 7008 2.304761 ACGGTGATCTGTGTGGGTATTT 59.695 45.455 0.00 0.00 0.00 1.40
4603 7009 3.244770 ACGGTGATCTGTGTGGGTATTTT 60.245 43.478 0.00 0.00 0.00 1.82
4604 7010 3.756434 CGGTGATCTGTGTGGGTATTTTT 59.244 43.478 0.00 0.00 0.00 1.94
4638 7044 5.784750 TTATGCTTGATTGAGTCACTTCG 57.215 39.130 0.00 0.00 36.32 3.79
4639 7045 3.385193 TGCTTGATTGAGTCACTTCGA 57.615 42.857 0.00 0.00 36.32 3.71
4640 7046 3.930336 TGCTTGATTGAGTCACTTCGAT 58.070 40.909 0.00 0.00 36.32 3.59
4641 7047 3.681417 TGCTTGATTGAGTCACTTCGATG 59.319 43.478 0.00 0.00 36.32 3.84
4642 7048 3.681897 GCTTGATTGAGTCACTTCGATGT 59.318 43.478 0.00 0.00 36.32 3.06
4643 7049 4.435253 GCTTGATTGAGTCACTTCGATGTG 60.435 45.833 21.95 21.95 36.32 3.21
4644 7050 2.995939 TGATTGAGTCACTTCGATGTGC 59.004 45.455 22.86 17.93 37.81 4.57
4645 7051 2.524569 TTGAGTCACTTCGATGTGCA 57.475 45.000 22.86 14.19 37.81 4.57
4646 7052 2.524569 TGAGTCACTTCGATGTGCAA 57.475 45.000 22.86 7.51 37.81 4.08
4647 7053 3.044235 TGAGTCACTTCGATGTGCAAT 57.956 42.857 22.86 13.00 37.81 3.56
4648 7054 4.186856 TGAGTCACTTCGATGTGCAATA 57.813 40.909 22.86 6.53 37.81 1.90
4649 7055 4.565022 TGAGTCACTTCGATGTGCAATAA 58.435 39.130 22.86 6.19 37.81 1.40
4650 7056 4.388773 TGAGTCACTTCGATGTGCAATAAC 59.611 41.667 22.86 16.18 37.81 1.89
4651 7057 3.684788 AGTCACTTCGATGTGCAATAACC 59.315 43.478 22.86 7.50 37.81 2.85
4652 7058 3.435327 GTCACTTCGATGTGCAATAACCA 59.565 43.478 22.86 4.24 37.81 3.67
4653 7059 3.435327 TCACTTCGATGTGCAATAACCAC 59.565 43.478 22.86 0.00 37.81 4.16
4654 7060 2.415168 ACTTCGATGTGCAATAACCACG 59.585 45.455 2.72 0.00 36.01 4.94
4655 7061 2.087501 TCGATGTGCAATAACCACGT 57.912 45.000 0.00 0.00 36.01 4.49
4656 7062 1.996898 TCGATGTGCAATAACCACGTC 59.003 47.619 0.00 4.18 42.80 4.34
4657 7063 1.062002 CGATGTGCAATAACCACGTCC 59.938 52.381 7.83 0.00 43.12 4.79
4658 7064 1.400494 GATGTGCAATAACCACGTCCC 59.600 52.381 0.00 0.00 41.25 4.46
4659 7065 0.606944 TGTGCAATAACCACGTCCCC 60.607 55.000 0.00 0.00 36.01 4.81
4660 7066 0.322187 GTGCAATAACCACGTCCCCT 60.322 55.000 0.00 0.00 0.00 4.79
4661 7067 1.065998 GTGCAATAACCACGTCCCCTA 60.066 52.381 0.00 0.00 0.00 3.53
4662 7068 1.629353 TGCAATAACCACGTCCCCTAA 59.371 47.619 0.00 0.00 0.00 2.69
4663 7069 2.040012 TGCAATAACCACGTCCCCTAAA 59.960 45.455 0.00 0.00 0.00 1.85
4664 7070 2.421073 GCAATAACCACGTCCCCTAAAC 59.579 50.000 0.00 0.00 0.00 2.01
4665 7071 3.677190 CAATAACCACGTCCCCTAAACA 58.323 45.455 0.00 0.00 0.00 2.83
4666 7072 3.622166 ATAACCACGTCCCCTAAACAG 57.378 47.619 0.00 0.00 0.00 3.16
4667 7073 1.426751 AACCACGTCCCCTAAACAGA 58.573 50.000 0.00 0.00 0.00 3.41
4668 7074 1.652947 ACCACGTCCCCTAAACAGAT 58.347 50.000 0.00 0.00 0.00 2.90
4669 7075 1.982958 ACCACGTCCCCTAAACAGATT 59.017 47.619 0.00 0.00 0.00 2.40
4670 7076 2.290071 ACCACGTCCCCTAAACAGATTG 60.290 50.000 0.00 0.00 0.00 2.67
4675 7081 4.700213 ACGTCCCCTAAACAGATTGATTTG 59.300 41.667 0.00 0.00 0.00 2.32
4676 7082 4.438744 CGTCCCCTAAACAGATTGATTTGC 60.439 45.833 0.00 0.00 0.00 3.68
4677 7083 4.706962 GTCCCCTAAACAGATTGATTTGCT 59.293 41.667 0.00 0.00 0.00 3.91
4762 7191 1.068741 CTACGCCCAGGGATGTCTAAC 59.931 57.143 10.89 0.00 0.00 2.34
4767 7196 2.617021 GCCCAGGGATGTCTAACGAAAA 60.617 50.000 10.89 0.00 0.00 2.29
4829 7258 3.515602 ATTCTGGGGCTAGGCTAAATG 57.484 47.619 16.80 3.02 0.00 2.32
4842 7271 3.768757 AGGCTAAATGGCAATGCTGTTTA 59.231 39.130 4.82 9.77 44.55 2.01
4844 7273 4.746611 GGCTAAATGGCAATGCTGTTTATC 59.253 41.667 4.82 6.68 41.37 1.75
4857 7290 6.176975 TGCTGTTTATCTACAAAACGATGG 57.823 37.500 0.00 0.00 39.23 3.51
4863 7296 1.072489 TCTACAAAACGATGGTGCCCA 59.928 47.619 0.00 0.00 38.19 5.36
4864 7297 1.468520 CTACAAAACGATGGTGCCCAG 59.531 52.381 0.00 0.00 36.75 4.45
4885 7318 1.865788 GCAGCATCGACAGGGCAAAA 61.866 55.000 0.00 0.00 0.00 2.44
4886 7319 0.169672 CAGCATCGACAGGGCAAAAG 59.830 55.000 0.00 0.00 0.00 2.27
4887 7320 0.962356 AGCATCGACAGGGCAAAAGG 60.962 55.000 0.00 0.00 0.00 3.11
4891 7324 1.533625 TCGACAGGGCAAAAGGATTG 58.466 50.000 0.00 0.00 0.00 2.67
4892 7325 1.202879 TCGACAGGGCAAAAGGATTGT 60.203 47.619 0.00 0.00 0.00 2.71
4893 7326 2.039216 TCGACAGGGCAAAAGGATTGTA 59.961 45.455 0.00 0.00 0.00 2.41
4894 7327 2.817258 CGACAGGGCAAAAGGATTGTAA 59.183 45.455 0.00 0.00 0.00 2.41
4895 7328 3.119849 CGACAGGGCAAAAGGATTGTAAG 60.120 47.826 0.00 0.00 0.00 2.34
4899 7332 5.222048 ACAGGGCAAAAGGATTGTAAGTAGA 60.222 40.000 0.00 0.00 0.00 2.59
4900 7333 5.710099 CAGGGCAAAAGGATTGTAAGTAGAA 59.290 40.000 0.00 0.00 0.00 2.10
4901 7334 6.378280 CAGGGCAAAAGGATTGTAAGTAGAAT 59.622 38.462 0.00 0.00 0.00 2.40
4903 7336 6.603599 GGGCAAAAGGATTGTAAGTAGAATCT 59.396 38.462 7.81 0.00 36.52 2.40
4906 7339 9.601217 GCAAAAGGATTGTAAGTAGAATCTCTA 57.399 33.333 7.81 0.00 36.52 2.43
4968 7691 2.824041 CCAGCGTGGCCATGTACC 60.824 66.667 25.67 9.78 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 3.583882 AAATCTGGGTGGGCCACGG 62.584 63.158 29.18 20.78 34.83 4.94
20 21 2.035626 AAATCTGGGTGGGCCACG 59.964 61.111 29.18 16.52 34.83 4.94
21 22 0.967380 CAGAAATCTGGGTGGGCCAC 60.967 60.000 28.69 28.69 40.20 5.01
22 23 1.383799 CAGAAATCTGGGTGGGCCA 59.616 57.895 0.00 0.00 40.20 5.36
23 24 2.054453 GCAGAAATCTGGGTGGGCC 61.054 63.158 12.09 0.00 43.94 5.80
24 25 0.899717 TTGCAGAAATCTGGGTGGGC 60.900 55.000 12.09 0.00 43.94 5.36
25 26 1.856629 ATTGCAGAAATCTGGGTGGG 58.143 50.000 12.09 0.00 43.94 4.61
26 27 3.967332 AAATTGCAGAAATCTGGGTGG 57.033 42.857 12.09 0.00 43.94 4.61
27 28 6.974622 GTGTATAAATTGCAGAAATCTGGGTG 59.025 38.462 12.09 0.00 43.94 4.61
28 29 6.891908 AGTGTATAAATTGCAGAAATCTGGGT 59.108 34.615 12.09 0.00 43.94 4.51
29 30 7.148018 ACAGTGTATAAATTGCAGAAATCTGGG 60.148 37.037 12.09 0.00 43.94 4.45
30 31 7.765307 ACAGTGTATAAATTGCAGAAATCTGG 58.235 34.615 12.09 0.00 43.94 3.86
31 32 9.630098 AAACAGTGTATAAATTGCAGAAATCTG 57.370 29.630 6.05 6.05 46.40 2.90
57 58 3.603965 TCCAAGGCCCAGAAGTAAAAA 57.396 42.857 0.00 0.00 0.00 1.94
58 59 3.227614 GTTCCAAGGCCCAGAAGTAAAA 58.772 45.455 0.00 0.00 0.00 1.52
59 60 2.175931 TGTTCCAAGGCCCAGAAGTAAA 59.824 45.455 0.00 0.00 0.00 2.01
60 61 1.777878 TGTTCCAAGGCCCAGAAGTAA 59.222 47.619 0.00 0.00 0.00 2.24
61 62 1.073284 GTGTTCCAAGGCCCAGAAGTA 59.927 52.381 0.00 0.00 0.00 2.24
62 63 0.178990 GTGTTCCAAGGCCCAGAAGT 60.179 55.000 0.00 0.00 0.00 3.01
63 64 0.895559 GGTGTTCCAAGGCCCAGAAG 60.896 60.000 0.00 0.00 0.00 2.85
64 65 1.152830 GGTGTTCCAAGGCCCAGAA 59.847 57.895 0.00 0.00 0.00 3.02
65 66 2.081787 TGGTGTTCCAAGGCCCAGA 61.082 57.895 0.00 0.00 41.25 3.86
66 67 2.520458 TGGTGTTCCAAGGCCCAG 59.480 61.111 0.00 0.00 41.25 4.45
74 75 0.626382 TCTTGTGGGTTGGTGTTCCA 59.374 50.000 0.00 0.00 42.66 3.53
75 76 1.613437 CATCTTGTGGGTTGGTGTTCC 59.387 52.381 0.00 0.00 0.00 3.62
76 77 2.306847 ACATCTTGTGGGTTGGTGTTC 58.693 47.619 0.00 0.00 0.00 3.18
77 78 2.452600 ACATCTTGTGGGTTGGTGTT 57.547 45.000 0.00 0.00 0.00 3.32
78 79 2.452600 AACATCTTGTGGGTTGGTGT 57.547 45.000 0.00 0.00 0.00 4.16
79 80 3.492482 GGAAAACATCTTGTGGGTTGGTG 60.492 47.826 0.00 0.00 0.00 4.17
80 81 2.698274 GGAAAACATCTTGTGGGTTGGT 59.302 45.455 0.00 0.00 0.00 3.67
81 82 2.037121 GGGAAAACATCTTGTGGGTTGG 59.963 50.000 0.00 0.00 0.00 3.77
82 83 2.965147 AGGGAAAACATCTTGTGGGTTG 59.035 45.455 0.00 0.00 0.00 3.77
83 84 3.117131 AGAGGGAAAACATCTTGTGGGTT 60.117 43.478 0.00 0.00 36.73 4.11
84 85 2.447047 AGAGGGAAAACATCTTGTGGGT 59.553 45.455 0.00 0.00 36.73 4.51
85 86 2.821969 CAGAGGGAAAACATCTTGTGGG 59.178 50.000 0.00 0.00 38.35 4.61
86 87 3.490348 ACAGAGGGAAAACATCTTGTGG 58.510 45.455 0.00 0.00 38.35 4.17
87 88 5.284079 CAAACAGAGGGAAAACATCTTGTG 58.716 41.667 0.00 0.00 38.35 3.33
88 89 4.342092 CCAAACAGAGGGAAAACATCTTGT 59.658 41.667 0.00 0.00 38.35 3.16
89 90 4.797275 GCCAAACAGAGGGAAAACATCTTG 60.797 45.833 0.00 0.00 38.35 3.02
90 91 3.321968 GCCAAACAGAGGGAAAACATCTT 59.678 43.478 0.00 0.00 38.35 2.40
91 92 2.893489 GCCAAACAGAGGGAAAACATCT 59.107 45.455 0.00 0.00 41.75 2.90
92 93 2.029020 GGCCAAACAGAGGGAAAACATC 60.029 50.000 0.00 0.00 0.00 3.06
93 94 1.970640 GGCCAAACAGAGGGAAAACAT 59.029 47.619 0.00 0.00 0.00 2.71
94 95 1.408969 GGCCAAACAGAGGGAAAACA 58.591 50.000 0.00 0.00 0.00 2.83
95 96 0.313987 CGGCCAAACAGAGGGAAAAC 59.686 55.000 2.24 0.00 0.00 2.43
96 97 0.825840 CCGGCCAAACAGAGGGAAAA 60.826 55.000 2.24 0.00 0.00 2.29
97 98 1.228429 CCGGCCAAACAGAGGGAAA 60.228 57.895 2.24 0.00 0.00 3.13
98 99 2.434331 CCGGCCAAACAGAGGGAA 59.566 61.111 2.24 0.00 0.00 3.97
99 100 4.344865 GCCGGCCAAACAGAGGGA 62.345 66.667 18.11 0.00 0.00 4.20
102 103 4.659172 TGGGCCGGCCAAACAGAG 62.659 66.667 44.46 0.00 37.98 3.35
103 104 4.659172 CTGGGCCGGCCAAACAGA 62.659 66.667 44.46 20.23 37.98 3.41
117 118 3.762247 CATTGTTGGGCGGGCTGG 61.762 66.667 0.26 0.00 0.00 4.85
118 119 3.762247 CCATTGTTGGGCGGGCTG 61.762 66.667 0.26 0.00 39.56 4.85
126 127 2.289010 GGAGCTTCAAACCCATTGTTGG 60.289 50.000 0.00 0.00 43.23 3.77
127 128 2.607771 CGGAGCTTCAAACCCATTGTTG 60.608 50.000 0.00 0.00 40.11 3.33
128 129 1.613437 CGGAGCTTCAAACCCATTGTT 59.387 47.619 0.00 0.00 40.11 2.83
129 130 1.247567 CGGAGCTTCAAACCCATTGT 58.752 50.000 0.00 0.00 40.11 2.71
144 145 1.003839 TAACAAGGCAGTGGCGGAG 60.004 57.895 11.51 7.71 42.47 4.63
145 146 1.003839 CTAACAAGGCAGTGGCGGA 60.004 57.895 11.51 0.00 42.47 5.54
146 147 2.040544 CCTAACAAGGCAGTGGCGG 61.041 63.158 11.51 10.27 42.47 6.13
147 148 2.040544 CCCTAACAAGGCAGTGGCG 61.041 63.158 11.51 0.11 42.47 5.69
148 149 0.960861 GACCCTAACAAGGCAGTGGC 60.961 60.000 9.02 9.02 40.13 5.01
149 150 0.322546 GGACCCTAACAAGGCAGTGG 60.323 60.000 0.00 0.00 0.00 4.00
150 151 0.400213 TGGACCCTAACAAGGCAGTG 59.600 55.000 0.00 0.00 0.00 3.66
151 152 0.693049 CTGGACCCTAACAAGGCAGT 59.307 55.000 0.00 0.00 0.00 4.40
152 153 0.984230 TCTGGACCCTAACAAGGCAG 59.016 55.000 0.00 0.00 0.00 4.85
153 154 0.984230 CTCTGGACCCTAACAAGGCA 59.016 55.000 0.00 0.00 0.00 4.75
154 155 0.393132 GCTCTGGACCCTAACAAGGC 60.393 60.000 0.00 0.00 0.00 4.35
155 156 0.253327 GGCTCTGGACCCTAACAAGG 59.747 60.000 0.00 0.00 0.00 3.61
156 157 0.253327 GGGCTCTGGACCCTAACAAG 59.747 60.000 0.00 0.00 44.68 3.16
157 158 2.383608 GGGCTCTGGACCCTAACAA 58.616 57.895 0.00 0.00 44.68 2.83
158 159 4.147135 GGGCTCTGGACCCTAACA 57.853 61.111 0.00 0.00 44.68 2.41
164 165 2.671682 GAGGTTGGGCTCTGGACC 59.328 66.667 0.00 0.00 42.24 4.46
174 175 3.380142 CAACGTTTTCAATGGAGGTTGG 58.620 45.455 0.00 0.00 32.02 3.77
188 189 1.070134 TCCAGACAGCTAGCAACGTTT 59.930 47.619 18.83 3.33 0.00 3.60
246 247 2.280052 GCTCTGGATGCGCTCTCC 60.280 66.667 19.03 19.03 0.00 3.71
252 253 1.500108 GAGATTGAGCTCTGGATGCG 58.500 55.000 16.19 0.00 35.28 4.73
254 255 3.666274 GATGGAGATTGAGCTCTGGATG 58.334 50.000 16.19 0.00 35.26 3.51
255 256 2.299582 CGATGGAGATTGAGCTCTGGAT 59.700 50.000 16.19 6.40 35.26 3.41
256 257 1.685517 CGATGGAGATTGAGCTCTGGA 59.314 52.381 16.19 1.15 35.26 3.86
285 286 4.529219 CGCCCACGAGCTATGGCA 62.529 66.667 10.50 0.00 44.22 4.92
313 314 4.495844 GGAATAGACGCATTTTTCGAAGGG 60.496 45.833 0.00 0.00 0.00 3.95
329 330 3.768008 CCTAGGGGAGCGGAATAGA 57.232 57.895 0.00 0.00 33.58 1.98
342 343 4.705991 GGGATACGATACTTTCTCCCTAGG 59.294 50.000 0.06 0.06 39.42 3.02
345 346 4.472690 AGGGATACGATACTTTCTCCCT 57.527 45.455 2.06 2.06 46.20 4.20
346 347 4.705991 CCTAGGGATACGATACTTTCTCCC 59.294 50.000 0.00 0.00 42.25 4.30
347 348 4.705991 CCCTAGGGATACGATACTTTCTCC 59.294 50.000 24.99 0.00 37.50 3.71
348 349 5.568392 TCCCTAGGGATACGATACTTTCTC 58.432 45.833 27.73 0.00 39.76 2.87
350 351 5.568392 TCTCCCTAGGGATACGATACTTTC 58.432 45.833 31.18 0.00 44.24 2.62
355 356 4.202641 TGCTTTCTCCCTAGGGATACGATA 60.203 45.833 31.18 17.67 44.24 2.92
359 360 3.577919 TCTGCTTTCTCCCTAGGGATAC 58.422 50.000 31.18 17.77 44.24 2.24
360 361 3.993658 TCTGCTTTCTCCCTAGGGATA 57.006 47.619 31.18 21.52 44.24 2.59
361 362 2.877154 TCTGCTTTCTCCCTAGGGAT 57.123 50.000 31.18 0.00 44.24 3.85
362 363 2.572104 GTTTCTGCTTTCTCCCTAGGGA 59.428 50.000 29.25 29.25 42.90 4.20
368 369 1.882623 CTGTGGTTTCTGCTTTCTCCC 59.117 52.381 0.00 0.00 0.00 4.30
370 371 3.206150 TGACTGTGGTTTCTGCTTTCTC 58.794 45.455 0.00 0.00 0.00 2.87
373 374 2.624838 CCATGACTGTGGTTTCTGCTTT 59.375 45.455 0.00 0.00 34.46 3.51
375 376 1.546323 CCCATGACTGTGGTTTCTGCT 60.546 52.381 0.00 0.00 37.57 4.24
377 378 0.883833 GCCCATGACTGTGGTTTCTG 59.116 55.000 0.00 0.00 37.57 3.02
378 379 0.606401 CGCCCATGACTGTGGTTTCT 60.606 55.000 0.00 0.00 37.57 2.52
383 384 2.436646 GGTCGCCCATGACTGTGG 60.437 66.667 0.00 0.00 38.91 4.17
386 387 1.078214 ATGTGGTCGCCCATGACTG 60.078 57.895 0.00 0.00 44.35 3.51
388 389 1.377202 ACATGTGGTCGCCCATGAC 60.377 57.895 21.79 0.89 44.35 3.06
389 390 1.377072 CACATGTGGTCGCCCATGA 60.377 57.895 18.51 2.98 44.35 3.07
391 392 1.377202 GACACATGTGGTCGCCCAT 60.377 57.895 28.64 5.90 44.35 4.00
393 394 1.169661 TTTGACACATGTGGTCGCCC 61.170 55.000 28.64 11.18 38.10 6.13
394 395 0.665835 TTTTGACACATGTGGTCGCC 59.334 50.000 28.64 12.78 38.10 5.54
395 396 2.223479 ACTTTTTGACACATGTGGTCGC 60.223 45.455 28.64 15.31 38.10 5.19
454 2468 4.527038 AGAGATCGAACCTCCACTTGTTAA 59.473 41.667 12.74 0.00 0.00 2.01
455 2469 4.087182 AGAGATCGAACCTCCACTTGTTA 58.913 43.478 12.74 0.00 0.00 2.41
487 2501 7.787904 GGGTATAATCCTCCAACCCTTTAATTT 59.212 37.037 1.53 0.00 45.34 1.82
492 2506 4.808767 GGGTATAATCCTCCAACCCTTT 57.191 45.455 1.53 0.00 45.34 3.11
500 2514 4.612401 GAGGACTAGGGGTATAATCCTCC 58.388 52.174 9.57 0.00 44.33 4.30
502 2516 3.340357 GGGAGGACTAGGGGTATAATCCT 59.660 52.174 0.00 0.00 39.31 3.24
503 2517 3.078612 TGGGAGGACTAGGGGTATAATCC 59.921 52.174 0.00 0.00 0.00 3.01
505 2519 3.738703 ACTGGGAGGACTAGGGGTATAAT 59.261 47.826 0.00 0.00 0.00 1.28
524 2542 4.488879 TGAACGTGATCTCTGATGAACTG 58.511 43.478 0.00 0.00 0.00 3.16
528 2546 6.650390 TCAAATTTGAACGTGATCTCTGATGA 59.350 34.615 18.45 0.00 33.55 2.92
567 2585 9.739276 ACTGACAGAATATTTCACCTTTATGAA 57.261 29.630 10.08 0.00 36.80 2.57
659 2686 1.440938 TTTGGAGAAACACACGCCGG 61.441 55.000 0.00 0.00 0.00 6.13
685 2717 3.123273 ACTAACTAATCTGTGGCCCCAT 58.877 45.455 0.00 0.00 0.00 4.00
686 2718 2.504175 GACTAACTAATCTGTGGCCCCA 59.496 50.000 0.00 0.00 0.00 4.96
739 2773 6.645415 AGAATACGGCTAATTAATCCTTGACG 59.355 38.462 0.00 0.00 0.00 4.35
773 2807 9.511272 GACCCGATTAACCCACTAATTATTATT 57.489 33.333 0.00 0.00 0.00 1.40
776 2810 5.993441 CGACCCGATTAACCCACTAATTATT 59.007 40.000 0.00 0.00 0.00 1.40
843 2878 4.499116 GCTGCCTCCCCTCCCCTA 62.499 72.222 0.00 0.00 0.00 3.53
1313 3364 1.954382 CGAATCCTACGGAGTGATCCA 59.046 52.381 0.00 0.00 45.73 3.41
1314 3365 1.336056 GCGAATCCTACGGAGTGATCC 60.336 57.143 0.00 0.00 45.73 3.36
1315 3366 1.337071 TGCGAATCCTACGGAGTGATC 59.663 52.381 0.00 0.00 45.73 2.92
1350 3411 5.388944 GCTGCATCCAGATCGATATTTTTC 58.611 41.667 0.00 0.00 41.77 2.29
1497 3562 3.429141 CAGCAGCAGCCTGAACCG 61.429 66.667 0.00 0.00 41.77 4.44
1579 3648 1.006220 CTCCGTGTAGTGCTGTGCA 60.006 57.895 0.00 0.00 35.60 4.57
1780 3852 1.283613 ACCATTGGAAGCGGAATACCA 59.716 47.619 10.37 0.00 35.59 3.25
1783 3855 4.080243 TCCTTAACCATTGGAAGCGGAATA 60.080 41.667 10.37 0.00 0.00 1.75
1795 3867 3.810743 GCCGGCATATCTCCTTAACCATT 60.811 47.826 24.80 0.00 0.00 3.16
1873 3945 5.558818 AGCAATATATTCTCAGGCTTCAGG 58.441 41.667 0.00 0.00 0.00 3.86
2104 4176 0.926155 CTGATTCATCCGTGTCAGCG 59.074 55.000 0.00 0.00 32.62 5.18
2106 4178 3.801050 GTCATCTGATTCATCCGTGTCAG 59.199 47.826 0.00 0.00 39.47 3.51
2128 4200 2.762887 TGCTGTACTCAGATCTCCCTTG 59.237 50.000 0.00 0.00 43.76 3.61
2199 4271 2.825836 CTTTGCTGCCCCGCCTAG 60.826 66.667 0.00 0.00 0.00 3.02
2230 4302 1.098050 GTTCAGCTTCCATCGCCATT 58.902 50.000 0.00 0.00 0.00 3.16
2317 4389 2.945668 GGGACATCTGTATTGCCTTGTC 59.054 50.000 0.00 0.00 34.24 3.18
2338 4410 2.726351 GGAGCCCAGAAGGACCTCG 61.726 68.421 0.00 0.00 38.24 4.63
2531 4603 8.164733 TCATTTAACAGGTGATAAACAGGGTAA 58.835 33.333 0.00 0.00 0.00 2.85
2561 4633 8.450434 ACTACCTTTCTTAAGTTAAAATGGGGA 58.550 33.333 1.63 7.60 0.00 4.81
2594 4666 3.865011 TCAGAGAGTCAGCTGTTGATC 57.135 47.619 14.67 8.46 38.29 2.92
2633 4705 7.939784 ATGAAGGGTATGGAAGAAAAACTAC 57.060 36.000 0.00 0.00 0.00 2.73
2671 4743 6.959639 ACAAGAGGCTCAGTTTTCAAATAA 57.040 33.333 18.26 0.00 0.00 1.40
2676 4751 3.181455 TGCTACAAGAGGCTCAGTTTTCA 60.181 43.478 18.26 10.00 0.00 2.69
2677 4752 3.403038 TGCTACAAGAGGCTCAGTTTTC 58.597 45.455 18.26 7.83 0.00 2.29
2681 4756 0.901124 CCTGCTACAAGAGGCTCAGT 59.099 55.000 18.26 16.59 0.00 3.41
2683 4758 1.276421 GAACCTGCTACAAGAGGCTCA 59.724 52.381 18.26 0.00 31.90 4.26
2684 4759 1.552792 AGAACCTGCTACAAGAGGCTC 59.447 52.381 6.34 6.34 31.90 4.70
2842 4917 3.081061 CCAGTAGCAACCAAACTGCATA 58.919 45.455 0.00 0.00 42.48 3.14
2867 4942 1.798234 GCCATGACTTGTGCTGTGCA 61.798 55.000 0.00 0.00 35.60 4.57
2868 4943 1.080974 GCCATGACTTGTGCTGTGC 60.081 57.895 0.00 0.00 0.00 4.57
2869 4944 1.582968 GGCCATGACTTGTGCTGTG 59.417 57.895 0.00 0.00 0.00 3.66
2870 4945 1.604593 GGGCCATGACTTGTGCTGT 60.605 57.895 4.39 0.00 0.00 4.40
2871 4946 1.592400 CTGGGCCATGACTTGTGCTG 61.592 60.000 6.72 0.00 0.00 4.41
2872 4947 1.303888 CTGGGCCATGACTTGTGCT 60.304 57.895 6.72 0.00 0.00 4.40
2934 5010 3.370840 AGTGCAGCTGGAATAAATGGA 57.629 42.857 17.12 0.00 0.00 3.41
3002 5084 1.944177 ACCAGATGGCTACTGACAGT 58.056 50.000 13.68 13.68 39.32 3.55
3003 5085 4.100035 TCATAACCAGATGGCTACTGACAG 59.900 45.833 0.00 0.00 39.32 3.51
3004 5086 4.030216 TCATAACCAGATGGCTACTGACA 58.970 43.478 11.69 0.00 39.32 3.58
3005 5087 4.672587 TCATAACCAGATGGCTACTGAC 57.327 45.455 11.69 0.00 39.32 3.51
3006 5088 4.443457 GCTTCATAACCAGATGGCTACTGA 60.443 45.833 11.69 0.00 39.32 3.41
3007 5089 3.812053 GCTTCATAACCAGATGGCTACTG 59.188 47.826 0.00 4.93 39.32 2.74
3008 5090 3.713764 AGCTTCATAACCAGATGGCTACT 59.286 43.478 0.00 0.00 39.32 2.57
3009 5091 3.812053 CAGCTTCATAACCAGATGGCTAC 59.188 47.826 0.00 0.00 39.32 3.58
3042 5124 4.097437 AGAGCGAACGGTGACTATTTCATA 59.903 41.667 3.17 0.00 36.32 2.15
3067 5149 7.388500 ACATAATTGTTTCCAGAAATTGCAAGG 59.612 33.333 4.94 0.00 29.55 3.61
3208 5298 6.735130 AGTACAATACACAAAGAAGCCAAAC 58.265 36.000 0.00 0.00 0.00 2.93
3314 5412 4.129878 CAGAATATGCAGCAGTCAATCG 57.870 45.455 0.00 0.00 0.00 3.34
3370 5730 7.594015 CACAAATGAGATTCCAAAGAGTTTGAG 59.406 37.037 0.87 0.00 43.26 3.02
3418 5792 8.903820 TCGACAATCATAAAGAGATTACTCAGA 58.096 33.333 0.00 0.00 44.79 3.27
3443 5817 6.362283 CGTGTTTCCAACTAATTTTCATGGTC 59.638 38.462 0.00 0.00 32.90 4.02
3479 5863 5.008415 GCATGTCTTAGTCTACGCCTACTTA 59.992 44.000 0.00 0.00 0.00 2.24
3520 5907 6.910995 TCCAAAAAGAGAGTAAGAGTAGACG 58.089 40.000 0.00 0.00 0.00 4.18
3526 5914 8.614469 ATTGAACTCCAAAAAGAGAGTAAGAG 57.386 34.615 0.00 0.00 42.48 2.85
3528 5916 8.502387 CAGATTGAACTCCAAAAAGAGAGTAAG 58.498 37.037 0.00 0.00 42.48 2.34
3537 5925 5.850557 TTGCTCAGATTGAACTCCAAAAA 57.149 34.783 0.00 0.00 38.43 1.94
3550 5938 3.726557 TCAAGTGGGAATTGCTCAGAT 57.273 42.857 0.00 0.00 0.00 2.90
3823 6212 3.133691 GGCATCTATGTCGCTGAATTCA 58.866 45.455 8.12 8.12 0.00 2.57
3826 6215 2.916702 TGGCATCTATGTCGCTGAAT 57.083 45.000 0.00 0.00 34.48 2.57
3901 6290 0.516439 GAAGCAACTGAGCAGCTGTC 59.484 55.000 16.64 11.99 38.86 3.51
4021 6410 6.651086 TGCATCTCTTTCATCATCTTTCTCT 58.349 36.000 0.00 0.00 0.00 3.10
4030 6419 3.380320 CAGCCATTGCATCTCTTTCATCA 59.620 43.478 0.00 0.00 41.13 3.07
4101 6490 1.153086 CCTGCTTGGGGATCCTTCG 60.153 63.158 12.58 0.00 0.00 3.79
4183 6572 3.254903 GCAATCTTAACCCAAAACCGACT 59.745 43.478 0.00 0.00 0.00 4.18
4184 6573 3.254903 AGCAATCTTAACCCAAAACCGAC 59.745 43.478 0.00 0.00 0.00 4.79
4193 6583 3.629398 CACTCATGGAGCAATCTTAACCC 59.371 47.826 0.00 0.00 32.04 4.11
4246 6652 3.074412 ACTACTCTTTTTCGCATGGGTG 58.926 45.455 9.86 0.00 0.00 4.61
4279 6685 3.034721 TCGACCAACCTCATACAACAC 57.965 47.619 0.00 0.00 0.00 3.32
4346 6752 9.832445 TTCTGATAGTACAAAAGAATATGTCCC 57.168 33.333 0.00 0.00 0.00 4.46
4391 6797 1.193874 CGCCGTTCACTCCTAAACAAC 59.806 52.381 0.00 0.00 0.00 3.32
4393 6799 0.320073 CCGCCGTTCACTCCTAAACA 60.320 55.000 0.00 0.00 0.00 2.83
4394 6800 1.632948 GCCGCCGTTCACTCCTAAAC 61.633 60.000 0.00 0.00 0.00 2.01
4405 6811 2.437716 AAATGATCCGCCGCCGTT 60.438 55.556 0.00 0.00 0.00 4.44
4479 6885 1.802069 GGAAGACAGCCTCACAAGTC 58.198 55.000 0.00 0.00 0.00 3.01
4480 6886 0.034059 CGGAAGACAGCCTCACAAGT 59.966 55.000 0.00 0.00 0.00 3.16
4481 6887 0.671781 CCGGAAGACAGCCTCACAAG 60.672 60.000 0.00 0.00 0.00 3.16
4482 6888 1.371183 CCGGAAGACAGCCTCACAA 59.629 57.895 0.00 0.00 0.00 3.33
4483 6889 3.059982 CCGGAAGACAGCCTCACA 58.940 61.111 0.00 0.00 0.00 3.58
4484 6890 2.435059 GCCGGAAGACAGCCTCAC 60.435 66.667 5.05 0.00 0.00 3.51
4485 6891 2.922503 TGCCGGAAGACAGCCTCA 60.923 61.111 5.05 0.00 0.00 3.86
4526 6932 0.598158 CGCATGTGCTTGGCAAAACT 60.598 50.000 0.00 0.00 41.47 2.66
4530 6936 4.703799 CGCGCATGTGCTTGGCAA 62.704 61.111 27.32 0.00 41.47 4.52
4534 6940 1.226101 CTTACCGCGCATGTGCTTG 60.226 57.895 27.32 20.15 39.32 4.01
4535 6941 0.390603 TACTTACCGCGCATGTGCTT 60.391 50.000 27.32 16.94 39.32 3.91
4537 6943 0.655733 AATACTTACCGCGCATGTGC 59.344 50.000 21.37 21.37 37.78 4.57
4538 6944 1.260561 GGAATACTTACCGCGCATGTG 59.739 52.381 8.75 0.66 0.00 3.21
4539 6945 1.134640 TGGAATACTTACCGCGCATGT 60.135 47.619 8.75 6.49 0.00 3.21
4540 6946 1.260561 GTGGAATACTTACCGCGCATG 59.739 52.381 8.75 0.00 0.00 4.06
4541 6947 1.134640 TGTGGAATACTTACCGCGCAT 60.135 47.619 8.75 0.00 39.24 4.73
4542 6948 0.246910 TGTGGAATACTTACCGCGCA 59.753 50.000 8.75 0.00 39.24 6.09
4543 6949 1.525619 GATGTGGAATACTTACCGCGC 59.474 52.381 0.00 0.00 39.24 6.86
4544 6950 2.132762 GGATGTGGAATACTTACCGCG 58.867 52.381 0.00 0.00 39.24 6.46
4545 6951 2.132762 CGGATGTGGAATACTTACCGC 58.867 52.381 0.00 0.00 35.05 5.68
4546 6952 3.067742 ACTCGGATGTGGAATACTTACCG 59.932 47.826 0.00 0.00 39.36 4.02
4549 6955 4.543689 AGGACTCGGATGTGGAATACTTA 58.456 43.478 0.00 0.00 0.00 2.24
4550 6956 3.375699 AGGACTCGGATGTGGAATACTT 58.624 45.455 0.00 0.00 0.00 2.24
4551 6957 3.033659 AGGACTCGGATGTGGAATACT 57.966 47.619 0.00 0.00 0.00 2.12
4552 6958 4.281182 ACATAGGACTCGGATGTGGAATAC 59.719 45.833 0.00 0.00 32.62 1.89
4553 6959 4.480115 ACATAGGACTCGGATGTGGAATA 58.520 43.478 0.00 0.00 32.62 1.75
4554 6960 3.309296 ACATAGGACTCGGATGTGGAAT 58.691 45.455 0.00 0.00 32.62 3.01
4555 6961 2.693591 GACATAGGACTCGGATGTGGAA 59.306 50.000 0.00 0.00 33.99 3.53
4556 6962 2.091830 AGACATAGGACTCGGATGTGGA 60.092 50.000 0.00 0.00 33.99 4.02
4557 6963 2.311463 AGACATAGGACTCGGATGTGG 58.689 52.381 0.00 0.00 33.99 4.17
4558 6964 4.338400 TGTAAGACATAGGACTCGGATGTG 59.662 45.833 0.00 0.00 33.99 3.21
4559 6965 4.338682 GTGTAAGACATAGGACTCGGATGT 59.661 45.833 0.00 0.00 36.52 3.06
4560 6966 4.554919 CGTGTAAGACATAGGACTCGGATG 60.555 50.000 0.00 0.00 0.00 3.51
4561 6967 3.564644 CGTGTAAGACATAGGACTCGGAT 59.435 47.826 0.00 0.00 0.00 4.18
4562 6968 2.941064 CGTGTAAGACATAGGACTCGGA 59.059 50.000 0.00 0.00 0.00 4.55
4563 6969 2.033049 CCGTGTAAGACATAGGACTCGG 59.967 54.545 0.00 0.00 41.01 4.63
4564 6970 2.681848 ACCGTGTAAGACATAGGACTCG 59.318 50.000 9.95 0.00 34.38 4.18
4565 6971 3.693085 TCACCGTGTAAGACATAGGACTC 59.307 47.826 9.95 0.00 34.38 3.36
4566 6972 3.693807 TCACCGTGTAAGACATAGGACT 58.306 45.455 9.95 0.00 34.38 3.85
4567 6973 4.338682 AGATCACCGTGTAAGACATAGGAC 59.661 45.833 9.95 0.00 34.38 3.85
4568 6974 4.338400 CAGATCACCGTGTAAGACATAGGA 59.662 45.833 9.95 0.00 34.38 2.94
4569 6975 4.098044 ACAGATCACCGTGTAAGACATAGG 59.902 45.833 0.00 3.48 35.70 2.57
4570 6976 5.037385 CACAGATCACCGTGTAAGACATAG 58.963 45.833 0.00 0.00 0.00 2.23
4571 6977 4.461431 ACACAGATCACCGTGTAAGACATA 59.539 41.667 12.32 0.00 44.32 2.29
4572 6978 3.258372 ACACAGATCACCGTGTAAGACAT 59.742 43.478 12.32 0.00 44.32 3.06
4573 6979 2.626266 ACACAGATCACCGTGTAAGACA 59.374 45.455 12.32 0.00 44.32 3.41
4574 6980 2.987149 CACACAGATCACCGTGTAAGAC 59.013 50.000 13.26 0.00 44.34 3.01
4575 6981 2.029380 CCACACAGATCACCGTGTAAGA 60.029 50.000 13.26 0.00 44.34 2.10
4576 6982 2.337583 CCACACAGATCACCGTGTAAG 58.662 52.381 13.26 6.59 44.34 2.34
4577 6983 1.001520 CCCACACAGATCACCGTGTAA 59.998 52.381 13.26 0.00 44.34 2.41
4578 6984 0.606096 CCCACACAGATCACCGTGTA 59.394 55.000 13.26 0.00 44.34 2.90
4580 6986 0.606096 TACCCACACAGATCACCGTG 59.394 55.000 8.03 8.03 39.10 4.94
4581 6987 1.568504 ATACCCACACAGATCACCGT 58.431 50.000 0.00 0.00 0.00 4.83
4582 6988 2.691409 AATACCCACACAGATCACCG 57.309 50.000 0.00 0.00 0.00 4.94
4613 7019 7.041440 TCGAAGTGACTCAATCAAGCATAAAAA 60.041 33.333 0.00 0.00 39.72 1.94
4614 7020 6.426633 TCGAAGTGACTCAATCAAGCATAAAA 59.573 34.615 0.00 0.00 39.72 1.52
4615 7021 5.931724 TCGAAGTGACTCAATCAAGCATAAA 59.068 36.000 0.00 0.00 39.72 1.40
4616 7022 5.478407 TCGAAGTGACTCAATCAAGCATAA 58.522 37.500 0.00 0.00 39.72 1.90
4617 7023 5.072040 TCGAAGTGACTCAATCAAGCATA 57.928 39.130 0.00 0.00 39.72 3.14
4618 7024 3.930336 TCGAAGTGACTCAATCAAGCAT 58.070 40.909 0.00 0.00 39.72 3.79
4619 7025 3.385193 TCGAAGTGACTCAATCAAGCA 57.615 42.857 0.00 0.00 39.72 3.91
4620 7026 3.681897 ACATCGAAGTGACTCAATCAAGC 59.318 43.478 0.00 0.00 39.72 4.01
4621 7027 4.435253 GCACATCGAAGTGACTCAATCAAG 60.435 45.833 23.91 0.00 42.05 3.02
4622 7028 3.433274 GCACATCGAAGTGACTCAATCAA 59.567 43.478 23.91 0.00 42.05 2.57
4623 7029 2.995939 GCACATCGAAGTGACTCAATCA 59.004 45.455 23.91 0.00 42.05 2.57
4624 7030 2.995939 TGCACATCGAAGTGACTCAATC 59.004 45.455 23.91 5.29 42.05 2.67
4625 7031 3.044235 TGCACATCGAAGTGACTCAAT 57.956 42.857 23.91 0.00 42.05 2.57
4626 7032 2.524569 TGCACATCGAAGTGACTCAA 57.475 45.000 23.91 1.28 42.05 3.02
4627 7033 2.524569 TTGCACATCGAAGTGACTCA 57.475 45.000 23.91 9.90 42.05 3.41
4628 7034 4.201724 GGTTATTGCACATCGAAGTGACTC 60.202 45.833 23.91 7.39 42.05 3.36
4629 7035 3.684788 GGTTATTGCACATCGAAGTGACT 59.315 43.478 23.91 9.66 42.05 3.41
4630 7036 3.435327 TGGTTATTGCACATCGAAGTGAC 59.565 43.478 23.91 14.92 42.05 3.67
4631 7037 3.435327 GTGGTTATTGCACATCGAAGTGA 59.565 43.478 23.91 4.81 42.05 3.41
4632 7038 3.724716 CGTGGTTATTGCACATCGAAGTG 60.725 47.826 16.15 16.15 42.37 3.16
4633 7039 2.415168 CGTGGTTATTGCACATCGAAGT 59.585 45.455 0.00 0.00 0.00 3.01
4634 7040 2.415168 ACGTGGTTATTGCACATCGAAG 59.585 45.455 0.00 0.00 0.00 3.79
4635 7041 2.413796 GACGTGGTTATTGCACATCGAA 59.586 45.455 0.00 0.00 0.00 3.71
4636 7042 1.996898 GACGTGGTTATTGCACATCGA 59.003 47.619 0.00 0.00 0.00 3.59
4637 7043 1.062002 GGACGTGGTTATTGCACATCG 59.938 52.381 0.00 0.00 0.00 3.84
4638 7044 1.400494 GGGACGTGGTTATTGCACATC 59.600 52.381 0.00 0.00 0.00 3.06
4639 7045 1.459450 GGGACGTGGTTATTGCACAT 58.541 50.000 0.00 0.00 0.00 3.21
4640 7046 0.606944 GGGGACGTGGTTATTGCACA 60.607 55.000 0.00 0.00 0.00 4.57
4641 7047 0.322187 AGGGGACGTGGTTATTGCAC 60.322 55.000 0.00 0.00 0.00 4.57
4642 7048 1.277579 TAGGGGACGTGGTTATTGCA 58.722 50.000 0.00 0.00 0.00 4.08
4643 7049 2.406596 TTAGGGGACGTGGTTATTGC 57.593 50.000 0.00 0.00 0.00 3.56
4644 7050 3.677190 TGTTTAGGGGACGTGGTTATTG 58.323 45.455 0.00 0.00 0.00 1.90
4645 7051 3.583966 TCTGTTTAGGGGACGTGGTTATT 59.416 43.478 0.00 0.00 0.00 1.40
4646 7052 3.175594 TCTGTTTAGGGGACGTGGTTAT 58.824 45.455 0.00 0.00 0.00 1.89
4647 7053 2.607499 TCTGTTTAGGGGACGTGGTTA 58.393 47.619 0.00 0.00 0.00 2.85
4648 7054 1.426751 TCTGTTTAGGGGACGTGGTT 58.573 50.000 0.00 0.00 0.00 3.67
4649 7055 1.652947 ATCTGTTTAGGGGACGTGGT 58.347 50.000 0.00 0.00 0.00 4.16
4650 7056 2.027561 TCAATCTGTTTAGGGGACGTGG 60.028 50.000 0.00 0.00 0.00 4.94
4651 7057 3.328382 TCAATCTGTTTAGGGGACGTG 57.672 47.619 0.00 0.00 0.00 4.49
4652 7058 4.569719 AATCAATCTGTTTAGGGGACGT 57.430 40.909 0.00 0.00 0.00 4.34
4653 7059 4.438744 GCAAATCAATCTGTTTAGGGGACG 60.439 45.833 0.00 0.00 0.00 4.79
4654 7060 4.706962 AGCAAATCAATCTGTTTAGGGGAC 59.293 41.667 0.00 0.00 0.00 4.46
4655 7061 4.934356 AGCAAATCAATCTGTTTAGGGGA 58.066 39.130 0.00 0.00 0.00 4.81
4656 7062 5.665916 AAGCAAATCAATCTGTTTAGGGG 57.334 39.130 0.00 0.00 0.00 4.79
4750 7157 6.001460 TGTTGAATTTTCGTTAGACATCCCT 58.999 36.000 0.00 0.00 0.00 4.20
4752 7159 6.577427 GTGTGTTGAATTTTCGTTAGACATCC 59.423 38.462 0.00 0.00 0.00 3.51
4762 7191 3.670055 GCATGGAGTGTGTTGAATTTTCG 59.330 43.478 0.00 0.00 0.00 3.46
4801 7230 3.809905 CCTAGCCCCAGAATTCAGTTAC 58.190 50.000 8.44 0.00 0.00 2.50
4829 7258 5.286082 CGTTTTGTAGATAAACAGCATTGCC 59.714 40.000 4.70 0.00 35.69 4.52
4863 7296 4.827087 CCCTGTCGATGCTGCGCT 62.827 66.667 9.73 0.00 0.00 5.92
4878 7311 6.603599 AGATTCTACTTACAATCCTTTTGCCC 59.396 38.462 0.00 0.00 30.41 5.36
4899 7332 8.823794 TGCCTGATTCATCATCTAATAGAGATT 58.176 33.333 0.00 0.00 42.70 2.40
4900 7333 8.376803 TGCCTGATTCATCATCTAATAGAGAT 57.623 34.615 0.00 0.00 46.52 2.75
4901 7334 7.787623 TGCCTGATTCATCATCTAATAGAGA 57.212 36.000 0.00 0.00 39.01 3.10
4903 7336 7.263496 CGATGCCTGATTCATCATCTAATAGA 58.737 38.462 18.67 0.00 40.11 1.98
4906 7339 5.183969 CCGATGCCTGATTCATCATCTAAT 58.816 41.667 18.67 0.00 40.11 1.73
4908 7341 3.618263 GCCGATGCCTGATTCATCATCTA 60.618 47.826 18.67 0.00 40.11 1.98
4909 7342 2.874861 GCCGATGCCTGATTCATCATCT 60.875 50.000 18.67 0.00 40.11 2.90
4911 7344 1.531423 GCCGATGCCTGATTCATCAT 58.469 50.000 4.22 2.38 40.11 2.45
4912 7345 0.881600 CGCCGATGCCTGATTCATCA 60.882 55.000 4.22 0.00 40.11 3.07
5069 7792 1.762957 GAGGGGATGTTCGAGATGGAA 59.237 52.381 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.