Multiple sequence alignment - TraesCS5A01G385400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G385400 chr5A 100.000 3493 0 0 1 3493 582979722 582983214 0.000000e+00 6451
1 TraesCS5A01G385400 chr5A 83.571 140 20 2 2894 3030 625759317 625759456 1.020000e-25 128
2 TraesCS5A01G385400 chr5D 93.697 1650 75 15 1065 2689 463087271 463088916 0.000000e+00 2444
3 TraesCS5A01G385400 chr5D 86.387 595 45 14 2929 3491 463088999 463089589 4.950000e-173 617
4 TraesCS5A01G385400 chr5D 83.366 511 26 21 76 555 463084097 463084579 5.390000e-113 418
5 TraesCS5A01G385400 chr5D 80.851 517 48 19 551 1033 463086696 463087195 3.320000e-95 359
6 TraesCS5A01G385400 chr5B 93.511 1618 77 15 1032 2639 569825359 569826958 0.000000e+00 2381
7 TraesCS5A01G385400 chr5B 81.939 526 40 15 3018 3491 569829251 569829773 9.090000e-106 394
8 TraesCS5A01G385400 chr5B 89.583 144 11 1 157 296 569768373 569768516 2.770000e-41 180
9 TraesCS5A01G385400 chr5B 94.048 84 5 0 55 138 569767118 569767201 1.020000e-25 128
10 TraesCS5A01G385400 chr2A 84.086 1351 173 30 1065 2393 591277850 591279180 0.000000e+00 1266
11 TraesCS5A01G385400 chr2A 78.921 1186 198 36 1238 2394 591264527 591265689 0.000000e+00 758
12 TraesCS5A01G385400 chr2A 79.444 540 86 19 1836 2352 676984961 676985498 3.320000e-95 359
13 TraesCS5A01G385400 chr2A 80.311 193 30 5 2702 2892 718578739 718578925 4.700000e-29 139
14 TraesCS5A01G385400 chr2A 83.704 135 19 2 2897 3028 711541093 711540959 1.320000e-24 124
15 TraesCS5A01G385400 chr2B 86.158 1192 130 23 1227 2392 526776232 526777414 0.000000e+00 1254
16 TraesCS5A01G385400 chr2B 78.535 1188 198 35 1238 2388 526763366 526764533 0.000000e+00 728
17 TraesCS5A01G385400 chr2B 79.592 539 87 15 1836 2352 632403870 632404407 7.130000e-97 364
18 TraesCS5A01G385400 chr2B 73.280 1134 228 54 1241 2349 526970023 526971106 2.580000e-91 346
19 TraesCS5A01G385400 chr2B 84.397 141 17 3 2894 3031 219619057 219619195 2.190000e-27 134
20 TraesCS5A01G385400 chr2D 85.482 1171 146 19 1239 2392 446942045 446943208 0.000000e+00 1199
21 TraesCS5A01G385400 chr2D 78.010 1196 206 38 1231 2388 446858934 446857758 0.000000e+00 699
22 TraesCS5A01G385400 chr2D 74.107 1120 208 57 1256 2349 447321440 447322503 1.520000e-103 387
23 TraesCS5A01G385400 chr2D 78.776 490 77 16 1242 1725 447149093 447149561 1.580000e-78 303
24 TraesCS5A01G385400 chr7B 86.911 191 18 5 2703 2892 124362921 124362737 1.270000e-49 207
25 TraesCS5A01G385400 chr7B 72.106 527 115 26 1836 2352 611554366 611553862 2.830000e-26 130
26 TraesCS5A01G385400 chrUn 86.387 191 19 6 2703 2892 20703524 20703708 5.910000e-48 202
27 TraesCS5A01G385400 chr3B 85.938 192 18 7 2702 2892 476958286 476958469 2.750000e-46 196
28 TraesCS5A01G385400 chr3B 83.088 136 20 2 2894 3027 784068566 784068700 1.700000e-23 121
29 TraesCS5A01G385400 chr3B 81.884 138 18 3 2898 3028 764888006 764887869 3.690000e-20 110
30 TraesCS5A01G385400 chr1A 85.000 140 18 2 2894 3030 478543802 478543941 4.700000e-29 139
31 TraesCS5A01G385400 chr7A 75.299 251 55 5 1836 2084 646956878 646956633 2.850000e-21 113
32 TraesCS5A01G385400 chr3D 81.159 138 23 2 2894 3028 577649576 577649439 1.330000e-19 108
33 TraesCS5A01G385400 chr3A 80.714 140 24 2 2894 3030 534201201 534201340 4.770000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G385400 chr5A 582979722 582983214 3492 False 6451.0 6451 100.00000 1 3493 1 chr5A.!!$F1 3492
1 TraesCS5A01G385400 chr5D 463084097 463089589 5492 False 959.5 2444 86.07525 76 3491 4 chr5D.!!$F1 3415
2 TraesCS5A01G385400 chr5B 569825359 569829773 4414 False 1387.5 2381 87.72500 1032 3491 2 chr5B.!!$F2 2459
3 TraesCS5A01G385400 chr2A 591277850 591279180 1330 False 1266.0 1266 84.08600 1065 2393 1 chr2A.!!$F2 1328
4 TraesCS5A01G385400 chr2A 591264527 591265689 1162 False 758.0 758 78.92100 1238 2394 1 chr2A.!!$F1 1156
5 TraesCS5A01G385400 chr2A 676984961 676985498 537 False 359.0 359 79.44400 1836 2352 1 chr2A.!!$F3 516
6 TraesCS5A01G385400 chr2B 526776232 526777414 1182 False 1254.0 1254 86.15800 1227 2392 1 chr2B.!!$F3 1165
7 TraesCS5A01G385400 chr2B 526763366 526764533 1167 False 728.0 728 78.53500 1238 2388 1 chr2B.!!$F2 1150
8 TraesCS5A01G385400 chr2B 632403870 632404407 537 False 364.0 364 79.59200 1836 2352 1 chr2B.!!$F5 516
9 TraesCS5A01G385400 chr2B 526970023 526971106 1083 False 346.0 346 73.28000 1241 2349 1 chr2B.!!$F4 1108
10 TraesCS5A01G385400 chr2D 446942045 446943208 1163 False 1199.0 1199 85.48200 1239 2392 1 chr2D.!!$F1 1153
11 TraesCS5A01G385400 chr2D 446857758 446858934 1176 True 699.0 699 78.01000 1231 2388 1 chr2D.!!$R1 1157
12 TraesCS5A01G385400 chr2D 447321440 447322503 1063 False 387.0 387 74.10700 1256 2349 1 chr2D.!!$F3 1093

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.107897 CTACGTATGCAGGTTGGGCA 60.108 55.0 0.00 0.00 46.66 5.36 F
302 303 0.240145 AGACGAACAACAGCGATCGA 59.760 50.0 21.57 0.00 38.59 3.59 F
448 456 0.245539 TAGCTACGGTGCACAGGAAC 59.754 55.0 21.15 8.28 34.99 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1012 3210 0.518636 CGGAGTTACTTGACCGTCGA 59.481 55.000 3.24 0.0 40.42 4.20 R
1775 4059 1.818674 TGCTAAGCACAGACGAGATCA 59.181 47.619 0.00 0.0 31.71 2.92 R
2772 5131 0.038159 GTCCAAGAGACCTCACACCG 60.038 60.000 0.00 0.0 39.84 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.227250 GGCCCTACGTATGCAGGT 58.773 61.111 16.25 0.00 0.00 4.00
18 19 1.525442 GGCCCTACGTATGCAGGTT 59.475 57.895 16.25 0.00 0.00 3.50
19 20 0.814010 GGCCCTACGTATGCAGGTTG 60.814 60.000 16.25 0.00 0.00 3.77
20 21 0.814010 GCCCTACGTATGCAGGTTGG 60.814 60.000 11.20 8.25 35.86 3.77
21 22 0.179056 CCCTACGTATGCAGGTTGGG 60.179 60.000 16.31 16.31 45.03 4.12
22 23 0.814010 CCTACGTATGCAGGTTGGGC 60.814 60.000 0.00 0.00 33.50 5.36
23 24 0.107897 CTACGTATGCAGGTTGGGCA 60.108 55.000 0.00 0.00 46.66 5.36
24 25 0.391927 TACGTATGCAGGTTGGGCAC 60.392 55.000 0.00 0.00 45.23 5.01
25 26 1.377202 CGTATGCAGGTTGGGCACT 60.377 57.895 0.00 0.00 45.23 4.40
26 27 1.369091 CGTATGCAGGTTGGGCACTC 61.369 60.000 0.00 0.00 45.23 3.51
27 28 1.078497 TATGCAGGTTGGGCACTCG 60.078 57.895 0.00 0.00 45.23 4.18
38 39 2.045926 GCACTCGCCTCCACCATT 60.046 61.111 0.00 0.00 0.00 3.16
39 40 2.109126 GCACTCGCCTCCACCATTC 61.109 63.158 0.00 0.00 0.00 2.67
40 41 1.450312 CACTCGCCTCCACCATTCC 60.450 63.158 0.00 0.00 0.00 3.01
41 42 2.202932 CTCGCCTCCACCATTCCG 60.203 66.667 0.00 0.00 0.00 4.30
42 43 3.740128 CTCGCCTCCACCATTCCGG 62.740 68.421 0.00 0.00 42.50 5.14
54 55 2.706636 ATTCCGGTGAATGATGGCG 58.293 52.632 0.00 0.00 39.74 5.69
55 56 0.819259 ATTCCGGTGAATGATGGCGG 60.819 55.000 0.00 0.00 39.74 6.13
56 57 2.884997 TTCCGGTGAATGATGGCGGG 62.885 60.000 0.00 0.00 0.00 6.13
57 58 3.585990 CGGTGAATGATGGCGGGC 61.586 66.667 0.00 0.00 0.00 6.13
58 59 2.440065 GGTGAATGATGGCGGGCA 60.440 61.111 6.74 6.74 0.00 5.36
59 60 1.829533 GGTGAATGATGGCGGGCAT 60.830 57.895 17.70 17.70 0.00 4.40
60 61 1.361271 GTGAATGATGGCGGGCATG 59.639 57.895 22.65 0.00 0.00 4.06
61 62 1.829096 TGAATGATGGCGGGCATGG 60.829 57.895 22.65 0.00 0.00 3.66
62 63 3.216944 GAATGATGGCGGGCATGGC 62.217 63.158 22.65 11.56 0.00 4.40
73 74 2.676471 GCATGGCCAGGACCGTTT 60.676 61.111 24.18 0.00 0.00 3.60
74 75 2.993471 GCATGGCCAGGACCGTTTG 61.993 63.158 24.18 8.10 0.00 2.93
99 100 0.321671 AGCTCCTGTGCTTTCGCTTA 59.678 50.000 0.00 0.00 40.93 3.09
249 250 4.796231 AGGGCACGCGACGCTTAG 62.796 66.667 15.93 8.40 0.00 2.18
295 296 1.143305 CTGGAGCAGACGAACAACAG 58.857 55.000 0.00 0.00 32.44 3.16
301 302 0.363512 CAGACGAACAACAGCGATCG 59.636 55.000 11.69 11.69 40.90 3.69
302 303 0.240145 AGACGAACAACAGCGATCGA 59.760 50.000 21.57 0.00 38.59 3.59
303 304 1.057636 GACGAACAACAGCGATCGAA 58.942 50.000 21.57 0.00 38.59 3.71
304 305 1.654105 GACGAACAACAGCGATCGAAT 59.346 47.619 21.57 2.87 38.59 3.34
305 306 1.654105 ACGAACAACAGCGATCGAATC 59.346 47.619 21.57 0.32 38.59 2.52
306 307 1.920574 CGAACAACAGCGATCGAATCT 59.079 47.619 21.57 3.19 37.48 2.40
307 308 2.284684 CGAACAACAGCGATCGAATCTG 60.285 50.000 21.57 18.53 37.48 2.90
308 309 2.370281 ACAACAGCGATCGAATCTGT 57.630 45.000 21.57 19.21 42.28 3.41
310 311 3.067106 ACAACAGCGATCGAATCTGTTT 58.933 40.909 26.66 18.57 45.55 2.83
336 344 2.017049 CCCGGAAAAATCGAATCAGCT 58.983 47.619 0.73 0.00 0.00 4.24
337 345 2.423538 CCCGGAAAAATCGAATCAGCTT 59.576 45.455 0.73 0.00 0.00 3.74
338 346 3.119495 CCCGGAAAAATCGAATCAGCTTT 60.119 43.478 0.73 0.00 0.00 3.51
339 347 4.485163 CCGGAAAAATCGAATCAGCTTTT 58.515 39.130 0.00 0.00 0.00 2.27
340 348 4.923281 CCGGAAAAATCGAATCAGCTTTTT 59.077 37.500 0.00 4.94 33.74 1.94
364 372 3.425577 TTTGATGGCAATCGAATCAGC 57.574 42.857 0.00 0.00 35.37 4.26
365 373 2.336945 TGATGGCAATCGAATCAGCT 57.663 45.000 0.00 0.00 35.37 4.24
440 448 1.880340 CTGCTGCTAGCTACGGTGC 60.880 63.158 17.23 10.63 42.97 5.01
442 450 2.167861 GCTGCTAGCTACGGTGCAC 61.168 63.158 17.23 8.80 38.45 4.57
443 451 1.215382 CTGCTAGCTACGGTGCACA 59.785 57.895 20.43 0.00 34.99 4.57
445 453 1.519455 GCTAGCTACGGTGCACAGG 60.519 63.158 21.15 13.30 34.99 4.00
446 454 1.945354 GCTAGCTACGGTGCACAGGA 61.945 60.000 21.15 12.13 34.99 3.86
447 455 0.530744 CTAGCTACGGTGCACAGGAA 59.469 55.000 21.15 7.92 34.99 3.36
448 456 0.245539 TAGCTACGGTGCACAGGAAC 59.754 55.000 21.15 8.28 34.99 3.62
449 457 2.033194 GCTACGGTGCACAGGAACC 61.033 63.158 21.15 2.97 39.66 3.62
450 458 1.671742 CTACGGTGCACAGGAACCT 59.328 57.895 21.15 2.14 41.08 3.50
458 497 0.965866 GCACAGGAACCTAAAGGCCC 60.966 60.000 0.00 0.00 39.32 5.80
463 502 3.010250 ACAGGAACCTAAAGGCCCTAAAG 59.990 47.826 0.00 0.00 38.85 1.85
468 507 5.047519 GGAACCTAAAGGCCCTAAAGAAAAC 60.048 44.000 0.00 0.00 39.32 2.43
473 512 3.156288 AGGCCCTAAAGAAAACTGGTC 57.844 47.619 0.00 0.00 0.00 4.02
476 515 3.227614 GCCCTAAAGAAAACTGGTCCAA 58.772 45.455 0.00 0.00 0.00 3.53
483 522 8.638873 CCTAAAGAAAACTGGTCCAATTAAAGT 58.361 33.333 0.00 0.00 0.00 2.66
504 543 5.829829 AGTAAACGATTCTCCCTAACGATC 58.170 41.667 0.00 0.00 0.00 3.69
505 544 4.730949 AAACGATTCTCCCTAACGATCA 57.269 40.909 0.00 0.00 0.00 2.92
507 546 3.288964 ACGATTCTCCCTAACGATCACT 58.711 45.455 0.00 0.00 0.00 3.41
516 555 5.617252 TCCCTAACGATCACTGTTCTTTTT 58.383 37.500 0.00 0.00 0.00 1.94
555 594 1.899814 TGGCTATTCCGGCGATCTTAT 59.100 47.619 9.30 0.00 37.80 1.73
556 595 2.271800 GGCTATTCCGGCGATCTTATG 58.728 52.381 9.30 0.00 0.00 1.90
557 596 1.661112 GCTATTCCGGCGATCTTATGC 59.339 52.381 9.30 0.00 0.00 3.14
681 2848 1.801178 GGAGGAGCGTTGACAAAGAAG 59.199 52.381 5.22 0.00 0.00 2.85
682 2849 1.195674 GAGGAGCGTTGACAAAGAAGC 59.804 52.381 5.22 2.15 0.00 3.86
683 2850 0.944386 GGAGCGTTGACAAAGAAGCA 59.056 50.000 5.22 0.00 0.00 3.91
684 2851 1.069636 GGAGCGTTGACAAAGAAGCAG 60.070 52.381 5.22 0.00 0.00 4.24
685 2852 1.867233 GAGCGTTGACAAAGAAGCAGA 59.133 47.619 5.22 0.00 0.00 4.26
686 2853 2.287915 GAGCGTTGACAAAGAAGCAGAA 59.712 45.455 5.22 0.00 0.00 3.02
687 2854 2.880890 AGCGTTGACAAAGAAGCAGAAT 59.119 40.909 5.22 0.00 0.00 2.40
688 2855 2.975851 GCGTTGACAAAGAAGCAGAATG 59.024 45.455 5.22 0.00 40.87 2.67
689 2856 3.558505 CGTTGACAAAGAAGCAGAATGG 58.441 45.455 0.00 0.00 35.86 3.16
690 2857 3.311966 GTTGACAAAGAAGCAGAATGGC 58.688 45.455 0.00 0.00 35.86 4.40
691 2858 1.888512 TGACAAAGAAGCAGAATGGCC 59.111 47.619 0.00 0.00 35.86 5.36
692 2859 1.888512 GACAAAGAAGCAGAATGGCCA 59.111 47.619 8.56 8.56 35.86 5.36
699 2866 1.035932 AGCAGAATGGCCATGTGAGC 61.036 55.000 25.78 22.50 35.86 4.26
701 2868 0.738975 CAGAATGGCCATGTGAGCAG 59.261 55.000 21.63 1.52 0.00 4.24
748 2915 1.302192 GCGGTGGTTCCTAGTTGCA 60.302 57.895 0.00 0.00 0.00 4.08
763 2930 1.785353 TTGCAACCCTACCCAGACCC 61.785 60.000 0.00 0.00 0.00 4.46
764 2931 2.228480 GCAACCCTACCCAGACCCA 61.228 63.158 0.00 0.00 0.00 4.51
780 2947 4.351938 CAACCGAGGCCGACACGA 62.352 66.667 14.05 0.00 38.22 4.35
781 2948 4.353437 AACCGAGGCCGACACGAC 62.353 66.667 14.05 0.00 38.22 4.34
789 2956 3.612681 CCGACACGACACCCCACT 61.613 66.667 0.00 0.00 0.00 4.00
790 2957 2.270257 CCGACACGACACCCCACTA 61.270 63.158 0.00 0.00 0.00 2.74
791 2958 1.601419 CCGACACGACACCCCACTAT 61.601 60.000 0.00 0.00 0.00 2.12
792 2959 0.245539 CGACACGACACCCCACTATT 59.754 55.000 0.00 0.00 0.00 1.73
793 2960 1.337447 CGACACGACACCCCACTATTT 60.337 52.381 0.00 0.00 0.00 1.40
821 2996 1.901948 CGAGATGCCCGCCCTAGTA 60.902 63.158 0.00 0.00 0.00 1.82
825 3000 2.717139 GATGCCCGCCCTAGTAGCAC 62.717 65.000 3.23 0.00 36.06 4.40
826 3001 4.237207 GCCCGCCCTAGTAGCACC 62.237 72.222 3.23 0.00 0.00 5.01
831 3006 1.787057 CGCCCTAGTAGCACCGAGAG 61.787 65.000 3.23 0.00 0.00 3.20
844 3034 2.642700 GAGAGGCGCCTCGATCTC 59.357 66.667 42.47 32.50 46.90 2.75
851 3041 3.102668 GCCTCGATCTCGCGCATC 61.103 66.667 8.75 4.36 39.60 3.91
853 3043 2.332869 CTCGATCTCGCGCATCCA 59.667 61.111 8.75 0.00 39.60 3.41
898 3096 4.677151 GACCCCCACCCTCACCCT 62.677 72.222 0.00 0.00 0.00 4.34
899 3097 4.677151 ACCCCCACCCTCACCCTC 62.677 72.222 0.00 0.00 0.00 4.30
902 3100 3.391382 CCCACCCTCACCCTCGTC 61.391 72.222 0.00 0.00 0.00 4.20
903 3101 3.391382 CCACCCTCACCCTCGTCC 61.391 72.222 0.00 0.00 0.00 4.79
904 3102 3.391382 CACCCTCACCCTCGTCCC 61.391 72.222 0.00 0.00 0.00 4.46
905 3103 4.716977 ACCCTCACCCTCGTCCCC 62.717 72.222 0.00 0.00 0.00 4.81
934 3132 2.813726 CCGGCCGACCATGGGAATA 61.814 63.158 30.73 0.00 34.57 1.75
935 3133 1.301716 CGGCCGACCATGGGAATAG 60.302 63.158 24.07 0.74 34.57 1.73
937 3135 0.250338 GGCCGACCATGGGAATAGAC 60.250 60.000 18.09 0.00 35.26 2.59
956 3154 2.048877 GAACCTTCCGTTCGGCGA 60.049 61.111 4.99 4.99 41.51 5.54
970 3168 2.437002 GCGACGCCCAACCCAATA 60.437 61.111 9.14 0.00 0.00 1.90
1003 3201 1.448013 GCGGCCGGCCTATAAGATC 60.448 63.158 41.01 13.75 34.80 2.75
1012 3210 2.495572 GGCCTATAAGATCCCACCTCCT 60.496 54.545 0.00 0.00 0.00 3.69
1016 3214 2.068834 TAAGATCCCACCTCCTCGAC 57.931 55.000 0.00 0.00 0.00 4.20
1073 3322 0.396417 TAGCTGGAGCCTGGAGAGAC 60.396 60.000 0.00 0.00 43.38 3.36
1162 3411 0.905357 TGAGAGCCTCCAAAGCTACC 59.095 55.000 0.00 0.00 41.75 3.18
1190 3439 9.429359 CTATTCCTAGCATGGTTAATCAGTTAG 57.571 37.037 1.12 0.00 0.00 2.34
1191 3440 6.174720 TCCTAGCATGGTTAATCAGTTAGG 57.825 41.667 1.12 15.62 0.00 2.69
1193 3442 6.157994 TCCTAGCATGGTTAATCAGTTAGGTT 59.842 38.462 18.54 1.00 0.00 3.50
1194 3443 7.346175 TCCTAGCATGGTTAATCAGTTAGGTTA 59.654 37.037 18.54 6.66 0.00 2.85
1195 3444 7.657761 CCTAGCATGGTTAATCAGTTAGGTTAG 59.342 40.741 1.12 5.91 0.00 2.34
1196 3445 6.357367 AGCATGGTTAATCAGTTAGGTTAGG 58.643 40.000 0.00 0.00 0.00 2.69
1746 4030 1.729470 GAGCGCTCAATCCTCCTCGA 61.729 60.000 31.91 0.00 0.00 4.04
1768 4052 3.006672 ACCCGCAGTGAGAACAAAG 57.993 52.632 0.00 0.00 0.00 2.77
1774 4058 2.210116 GCAGTGAGAACAAAGTTCCGA 58.790 47.619 6.29 0.00 0.00 4.55
1775 4059 2.808543 GCAGTGAGAACAAAGTTCCGAT 59.191 45.455 6.29 0.00 0.00 4.18
1788 4072 2.098280 AGTTCCGATGATCTCGTCTGTG 59.902 50.000 11.76 0.13 46.18 3.66
2352 4692 3.354645 ACGTCTCGCTCGTCTGCA 61.355 61.111 0.00 0.00 36.85 4.41
2455 4795 2.489722 GCTGGGAAGTGGAAAATCACTC 59.510 50.000 0.00 0.00 46.17 3.51
2461 4801 4.216472 GGAAGTGGAAAATCACTCCTGTTC 59.784 45.833 0.00 0.00 46.17 3.18
2554 4896 6.660521 TGGAGCATACAGAAAACAGATCAAAT 59.339 34.615 0.00 0.00 0.00 2.32
2558 4901 8.404000 AGCATACAGAAAACAGATCAAATCATC 58.596 33.333 0.00 0.00 0.00 2.92
2559 4902 8.186163 GCATACAGAAAACAGATCAAATCATCA 58.814 33.333 0.00 0.00 0.00 3.07
2598 4941 1.992170 ACGTAACAAGCGGCTTCTAG 58.008 50.000 13.24 4.56 0.00 2.43
2613 4956 5.416947 GGCTTCTAGGACGAATGTCTTTTA 58.583 41.667 0.00 0.00 44.83 1.52
2620 4963 4.693566 AGGACGAATGTCTTTTATGCGAAA 59.306 37.500 0.00 0.00 44.83 3.46
2624 4967 6.378582 ACGAATGTCTTTTATGCGAAACAAT 58.621 32.000 0.00 0.00 31.07 2.71
2639 4982 4.432712 GAAACAATATGTGGTTGGATGGC 58.567 43.478 0.00 0.00 37.24 4.40
2652 5011 0.466124 GGATGGCTAGGTGGACAGTC 59.534 60.000 0.00 0.00 0.00 3.51
2653 5012 0.103208 GATGGCTAGGTGGACAGTCG 59.897 60.000 0.00 0.00 0.00 4.18
2662 5021 2.492484 AGGTGGACAGTCGTATCTCAAC 59.508 50.000 0.00 0.00 0.00 3.18
2689 5048 2.158623 AGGTTTCAAGTCATGGTGCTCA 60.159 45.455 0.00 0.00 0.00 4.26
2691 5050 1.511850 TTCAAGTCATGGTGCTCACG 58.488 50.000 0.00 0.00 0.00 4.35
2692 5051 0.320683 TCAAGTCATGGTGCTCACGG 60.321 55.000 0.00 0.00 0.00 4.94
2693 5052 1.003355 AAGTCATGGTGCTCACGGG 60.003 57.895 0.00 0.00 0.00 5.28
2695 5054 1.302511 GTCATGGTGCTCACGGGTT 60.303 57.895 0.00 0.00 0.00 4.11
2696 5055 1.003839 TCATGGTGCTCACGGGTTC 60.004 57.895 0.00 0.00 0.00 3.62
2697 5056 1.302431 CATGGTGCTCACGGGTTCA 60.302 57.895 0.00 0.00 0.00 3.18
2698 5057 0.888736 CATGGTGCTCACGGGTTCAA 60.889 55.000 0.00 0.00 0.00 2.69
2699 5058 0.606401 ATGGTGCTCACGGGTTCAAG 60.606 55.000 0.00 0.00 0.00 3.02
2700 5059 1.070786 GGTGCTCACGGGTTCAAGA 59.929 57.895 0.00 0.00 0.00 3.02
2701 5060 1.228657 GGTGCTCACGGGTTCAAGAC 61.229 60.000 0.00 0.00 0.00 3.01
2709 5068 2.359975 GGTTCAAGACCTGCCGGG 60.360 66.667 2.18 0.00 45.55 5.73
2710 5069 3.056328 GTTCAAGACCTGCCGGGC 61.056 66.667 13.32 13.32 39.31 6.13
2711 5070 4.697756 TTCAAGACCTGCCGGGCG 62.698 66.667 15.40 9.14 45.93 6.13
2725 5084 4.773117 GGCGGTCGGTCGTCAGTC 62.773 72.222 0.00 0.00 34.56 3.51
2726 5085 4.773117 GCGGTCGGTCGTCAGTCC 62.773 72.222 0.00 0.00 0.00 3.85
2727 5086 3.054503 CGGTCGGTCGTCAGTCCT 61.055 66.667 0.00 0.00 0.00 3.85
2728 5087 2.876219 GGTCGGTCGTCAGTCCTC 59.124 66.667 0.00 0.00 0.00 3.71
2729 5088 2.479650 GTCGGTCGTCAGTCCTCG 59.520 66.667 0.00 0.00 0.00 4.63
2731 5090 2.745100 CGGTCGTCAGTCCTCGGA 60.745 66.667 0.00 0.00 0.00 4.55
2733 5092 1.654954 CGGTCGTCAGTCCTCGGATT 61.655 60.000 0.00 0.00 0.00 3.01
2734 5093 0.531200 GGTCGTCAGTCCTCGGATTT 59.469 55.000 0.00 0.00 0.00 2.17
2736 5095 0.108804 TCGTCAGTCCTCGGATTTGC 60.109 55.000 0.00 0.00 0.00 3.68
2737 5096 0.389817 CGTCAGTCCTCGGATTTGCA 60.390 55.000 0.00 0.00 0.00 4.08
2738 5097 1.363744 GTCAGTCCTCGGATTTGCAG 58.636 55.000 0.00 0.00 0.00 4.41
2739 5098 0.391661 TCAGTCCTCGGATTTGCAGC 60.392 55.000 0.00 0.00 0.00 5.25
2740 5099 0.392193 CAGTCCTCGGATTTGCAGCT 60.392 55.000 0.00 0.00 0.00 4.24
2742 5101 1.134670 AGTCCTCGGATTTGCAGCTAC 60.135 52.381 0.00 0.00 0.00 3.58
2743 5102 0.179111 TCCTCGGATTTGCAGCTACG 60.179 55.000 0.00 0.00 0.00 3.51
2744 5103 0.460284 CCTCGGATTTGCAGCTACGT 60.460 55.000 0.00 0.00 0.00 3.57
2745 5104 0.924090 CTCGGATTTGCAGCTACGTC 59.076 55.000 0.00 0.00 0.00 4.34
2746 5105 0.800683 TCGGATTTGCAGCTACGTCG 60.801 55.000 0.00 0.00 0.00 5.12
2747 5106 1.348594 GGATTTGCAGCTACGTCGC 59.651 57.895 3.45 3.45 0.00 5.19
2748 5107 1.084370 GGATTTGCAGCTACGTCGCT 61.084 55.000 9.05 9.05 41.90 4.93
2754 5113 3.510846 AGCTACGTCGCTGGGTAG 58.489 61.111 14.49 0.00 39.16 3.18
2755 5114 1.378250 AGCTACGTCGCTGGGTAGT 60.378 57.895 14.49 0.00 39.16 2.73
2756 5115 1.063811 GCTACGTCGCTGGGTAGTC 59.936 63.158 4.57 0.00 38.65 2.59
2757 5116 1.351012 CTACGTCGCTGGGTAGTCG 59.649 63.158 0.00 0.00 33.18 4.18
2758 5117 2.044832 CTACGTCGCTGGGTAGTCGG 62.045 65.000 0.00 0.00 33.18 4.79
2759 5118 2.803155 TACGTCGCTGGGTAGTCGGT 62.803 60.000 0.00 0.00 0.00 4.69
2760 5119 2.488820 GTCGCTGGGTAGTCGGTC 59.511 66.667 0.00 0.00 0.00 4.79
2761 5120 3.129502 TCGCTGGGTAGTCGGTCG 61.130 66.667 0.00 0.00 0.00 4.79
2762 5121 4.189188 CGCTGGGTAGTCGGTCGG 62.189 72.222 0.00 0.00 0.00 4.79
2763 5122 4.509737 GCTGGGTAGTCGGTCGGC 62.510 72.222 0.00 0.00 0.00 5.54
2764 5123 4.189188 CTGGGTAGTCGGTCGGCG 62.189 72.222 0.00 0.00 0.00 6.46
2767 5126 4.487412 GGTAGTCGGTCGGCGGTG 62.487 72.222 7.21 0.00 0.00 4.94
2768 5127 4.487412 GTAGTCGGTCGGCGGTGG 62.487 72.222 7.21 0.00 0.00 4.61
2786 5145 3.374402 CGGCGGTGTGAGGTCTCT 61.374 66.667 0.00 0.00 0.00 3.10
2787 5146 2.932234 CGGCGGTGTGAGGTCTCTT 61.932 63.158 0.00 0.00 0.00 2.85
2788 5147 1.374758 GGCGGTGTGAGGTCTCTTG 60.375 63.158 0.00 0.00 0.00 3.02
2789 5148 1.374758 GCGGTGTGAGGTCTCTTGG 60.375 63.158 0.00 0.00 0.00 3.61
2790 5149 1.816863 GCGGTGTGAGGTCTCTTGGA 61.817 60.000 0.00 0.00 0.00 3.53
2791 5150 0.038159 CGGTGTGAGGTCTCTTGGAC 60.038 60.000 0.00 0.00 43.79 4.02
2792 5151 1.048601 GGTGTGAGGTCTCTTGGACA 58.951 55.000 0.00 0.00 46.16 4.02
2793 5152 1.001406 GGTGTGAGGTCTCTTGGACAG 59.999 57.143 0.00 0.00 46.16 3.51
2794 5153 1.689273 GTGTGAGGTCTCTTGGACAGT 59.311 52.381 0.00 0.00 46.16 3.55
2795 5154 1.688735 TGTGAGGTCTCTTGGACAGTG 59.311 52.381 0.00 0.00 46.16 3.66
2796 5155 1.964223 GTGAGGTCTCTTGGACAGTGA 59.036 52.381 0.00 0.00 46.16 3.41
2797 5156 1.964223 TGAGGTCTCTTGGACAGTGAC 59.036 52.381 0.00 0.00 46.16 3.67
2799 5158 3.917072 GTCTCTTGGACAGTGACCC 57.083 57.895 9.22 4.43 43.94 4.46
2800 5159 0.321996 GTCTCTTGGACAGTGACCCC 59.678 60.000 9.22 1.98 43.94 4.95
2801 5160 0.105194 TCTCTTGGACAGTGACCCCA 60.105 55.000 9.22 4.56 0.00 4.96
2802 5161 0.764890 CTCTTGGACAGTGACCCCAA 59.235 55.000 9.22 11.51 37.60 4.12
2803 5162 1.352352 CTCTTGGACAGTGACCCCAAT 59.648 52.381 9.22 0.00 39.03 3.16
2804 5163 1.780309 TCTTGGACAGTGACCCCAATT 59.220 47.619 9.22 0.00 39.03 2.32
2805 5164 2.162681 CTTGGACAGTGACCCCAATTC 58.837 52.381 9.22 0.00 39.03 2.17
2806 5165 0.404040 TGGACAGTGACCCCAATTCC 59.596 55.000 9.22 0.00 0.00 3.01
2807 5166 0.404040 GGACAGTGACCCCAATTCCA 59.596 55.000 0.00 0.00 0.00 3.53
2808 5167 1.005924 GGACAGTGACCCCAATTCCAT 59.994 52.381 0.00 0.00 0.00 3.41
2809 5168 2.094675 GACAGTGACCCCAATTCCATG 58.905 52.381 0.00 0.00 0.00 3.66
2810 5169 1.272648 ACAGTGACCCCAATTCCATGG 60.273 52.381 4.97 4.97 40.35 3.66
2811 5170 1.005805 CAGTGACCCCAATTCCATGGA 59.994 52.381 11.44 11.44 43.54 3.41
2812 5171 1.285962 AGTGACCCCAATTCCATGGAG 59.714 52.381 15.53 4.62 43.54 3.86
2813 5172 0.630673 TGACCCCAATTCCATGGAGG 59.369 55.000 15.53 14.67 43.54 4.30
2814 5173 0.631212 GACCCCAATTCCATGGAGGT 59.369 55.000 19.76 19.76 43.54 3.85
2815 5174 0.336048 ACCCCAATTCCATGGAGGTG 59.664 55.000 19.16 17.67 43.54 4.00
2816 5175 0.336048 CCCCAATTCCATGGAGGTGT 59.664 55.000 15.53 0.00 43.54 4.16
2817 5176 1.477553 CCCAATTCCATGGAGGTGTG 58.522 55.000 15.53 11.17 43.54 3.82
2818 5177 1.477553 CCAATTCCATGGAGGTGTGG 58.522 55.000 15.53 15.98 43.54 4.17
2819 5178 1.005805 CCAATTCCATGGAGGTGTGGA 59.994 52.381 21.78 5.97 43.54 4.02
2820 5179 2.372264 CAATTCCATGGAGGTGTGGAG 58.628 52.381 15.53 0.00 44.74 3.86
2821 5180 1.971149 ATTCCATGGAGGTGTGGAGA 58.029 50.000 15.53 0.00 44.74 3.71
2822 5181 1.971149 TTCCATGGAGGTGTGGAGAT 58.029 50.000 15.53 0.00 44.74 2.75
2823 5182 1.206878 TCCATGGAGGTGTGGAGATG 58.793 55.000 11.44 0.00 39.51 2.90
2824 5183 0.182061 CCATGGAGGTGTGGAGATGG 59.818 60.000 5.56 0.00 37.72 3.51
2825 5184 0.182061 CATGGAGGTGTGGAGATGGG 59.818 60.000 0.00 0.00 0.00 4.00
2826 5185 1.639635 ATGGAGGTGTGGAGATGGGC 61.640 60.000 0.00 0.00 0.00 5.36
2827 5186 1.997874 GGAGGTGTGGAGATGGGCT 60.998 63.158 0.00 0.00 0.00 5.19
2828 5187 0.691078 GGAGGTGTGGAGATGGGCTA 60.691 60.000 0.00 0.00 0.00 3.93
2829 5188 0.466124 GAGGTGTGGAGATGGGCTAC 59.534 60.000 0.00 0.00 0.00 3.58
2830 5189 1.144057 GGTGTGGAGATGGGCTACG 59.856 63.158 0.00 0.00 0.00 3.51
2831 5190 1.521681 GTGTGGAGATGGGCTACGC 60.522 63.158 0.00 0.00 38.50 4.42
2832 5191 2.279517 GTGGAGATGGGCTACGCG 60.280 66.667 3.53 3.53 0.00 6.01
2833 5192 2.758327 TGGAGATGGGCTACGCGT 60.758 61.111 19.17 19.17 0.00 6.01
2834 5193 2.279517 GGAGATGGGCTACGCGTG 60.280 66.667 24.59 13.17 0.00 5.34
2835 5194 2.279517 GAGATGGGCTACGCGTGG 60.280 66.667 24.59 21.81 0.00 4.94
2836 5195 2.758327 AGATGGGCTACGCGTGGA 60.758 61.111 27.75 5.78 0.00 4.02
2837 5196 2.088674 GAGATGGGCTACGCGTGGAT 62.089 60.000 27.75 11.06 0.00 3.41
2838 5197 1.956170 GATGGGCTACGCGTGGATG 60.956 63.158 27.75 12.44 0.00 3.51
2839 5198 4.830765 TGGGCTACGCGTGGATGC 62.831 66.667 27.75 20.84 0.00 3.91
2840 5199 4.830765 GGGCTACGCGTGGATGCA 62.831 66.667 27.75 1.07 34.15 3.96
2841 5200 2.817834 GGCTACGCGTGGATGCAA 60.818 61.111 27.75 0.20 34.15 4.08
2842 5201 2.395360 GGCTACGCGTGGATGCAAA 61.395 57.895 27.75 0.00 34.15 3.68
2843 5202 1.714899 GGCTACGCGTGGATGCAAAT 61.715 55.000 27.75 0.00 34.15 2.32
2844 5203 0.316196 GCTACGCGTGGATGCAAATC 60.316 55.000 27.75 1.48 34.15 2.17
2845 5204 1.290203 CTACGCGTGGATGCAAATCT 58.710 50.000 24.59 0.00 34.15 2.40
2846 5205 1.665679 CTACGCGTGGATGCAAATCTT 59.334 47.619 24.59 0.00 34.15 2.40
2847 5206 0.168788 ACGCGTGGATGCAAATCTTG 59.831 50.000 12.93 0.00 34.15 3.02
2860 5219 3.054878 CAAATCTTGCACAACTTCTGCC 58.945 45.455 0.00 0.00 33.36 4.85
2861 5220 2.283145 ATCTTGCACAACTTCTGCCT 57.717 45.000 0.00 0.00 33.36 4.75
2862 5221 1.311859 TCTTGCACAACTTCTGCCTG 58.688 50.000 0.00 0.00 33.36 4.85
2863 5222 0.313043 CTTGCACAACTTCTGCCTGG 59.687 55.000 0.00 0.00 33.36 4.45
2864 5223 0.395586 TTGCACAACTTCTGCCTGGT 60.396 50.000 0.00 0.00 33.36 4.00
2865 5224 0.819259 TGCACAACTTCTGCCTGGTC 60.819 55.000 0.00 0.00 33.36 4.02
2866 5225 1.845809 GCACAACTTCTGCCTGGTCG 61.846 60.000 0.00 0.00 0.00 4.79
2867 5226 1.071471 ACAACTTCTGCCTGGTCGG 59.929 57.895 0.00 0.00 0.00 4.79
2876 5235 2.280389 CCTGGTCGGCGATGATGG 60.280 66.667 14.79 9.76 0.00 3.51
2877 5236 2.969238 CTGGTCGGCGATGATGGC 60.969 66.667 14.79 0.00 0.00 4.40
2878 5237 3.738429 CTGGTCGGCGATGATGGCA 62.738 63.158 14.79 0.00 0.00 4.92
2879 5238 3.272334 GGTCGGCGATGATGGCAC 61.272 66.667 14.79 0.00 0.00 5.01
2880 5239 3.272334 GTCGGCGATGATGGCACC 61.272 66.667 14.79 0.00 0.00 5.01
2881 5240 4.545706 TCGGCGATGATGGCACCC 62.546 66.667 4.99 0.00 0.00 4.61
2882 5241 4.552365 CGGCGATGATGGCACCCT 62.552 66.667 0.00 0.00 0.00 4.34
2883 5242 2.124151 GGCGATGATGGCACCCTT 60.124 61.111 1.08 0.00 0.00 3.95
2884 5243 2.484062 GGCGATGATGGCACCCTTG 61.484 63.158 1.08 0.00 0.00 3.61
2885 5244 1.451927 GCGATGATGGCACCCTTGA 60.452 57.895 0.00 0.00 0.00 3.02
2886 5245 0.820891 GCGATGATGGCACCCTTGAT 60.821 55.000 0.00 0.00 0.00 2.57
2887 5246 0.949397 CGATGATGGCACCCTTGATG 59.051 55.000 0.00 0.00 0.00 3.07
2888 5247 1.748244 CGATGATGGCACCCTTGATGT 60.748 52.381 0.00 0.00 0.00 3.06
2889 5248 1.952296 GATGATGGCACCCTTGATGTC 59.048 52.381 0.00 0.00 0.00 3.06
2890 5249 0.697658 TGATGGCACCCTTGATGTCA 59.302 50.000 0.00 0.00 35.83 3.58
2892 5251 2.062971 ATGGCACCCTTGATGTCATC 57.937 50.000 5.83 5.83 37.91 2.92
2895 5254 0.753111 GCACCCTTGATGTCATCCCC 60.753 60.000 10.36 0.00 0.00 4.81
2897 5256 0.914417 ACCCTTGATGTCATCCCCGT 60.914 55.000 10.36 0.00 0.00 5.28
2905 5264 1.033746 TGTCATCCCCGTCGACTACC 61.034 60.000 14.70 0.00 0.00 3.18
2915 5274 4.278956 CGACTACCAGGCGCTTTT 57.721 55.556 7.64 0.00 41.27 2.27
2916 5275 1.787847 CGACTACCAGGCGCTTTTG 59.212 57.895 7.64 3.58 41.27 2.44
2917 5276 1.635663 CGACTACCAGGCGCTTTTGG 61.636 60.000 19.66 19.66 41.27 3.28
2919 5278 0.889186 ACTACCAGGCGCTTTTGGTG 60.889 55.000 29.18 22.84 46.74 4.17
2920 5279 0.605319 CTACCAGGCGCTTTTGGTGA 60.605 55.000 29.18 17.70 46.74 4.02
2921 5280 0.887387 TACCAGGCGCTTTTGGTGAC 60.887 55.000 29.18 4.51 46.74 3.67
2922 5281 1.898574 CCAGGCGCTTTTGGTGACT 60.899 57.895 7.64 0.00 46.11 3.41
2923 5282 1.455383 CCAGGCGCTTTTGGTGACTT 61.455 55.000 7.64 0.00 41.79 3.01
2924 5283 0.040067 CAGGCGCTTTTGGTGACTTC 60.040 55.000 7.64 0.00 41.79 3.01
2925 5284 0.465460 AGGCGCTTTTGGTGACTTCA 60.465 50.000 7.64 0.00 41.79 3.02
2926 5285 0.598065 GGCGCTTTTGGTGACTTCAT 59.402 50.000 7.64 0.00 0.00 2.57
2927 5286 1.401539 GGCGCTTTTGGTGACTTCATC 60.402 52.381 7.64 0.00 0.00 2.92
2933 5292 5.563475 CGCTTTTGGTGACTTCATCAATCTT 60.563 40.000 5.76 0.00 45.32 2.40
2952 5311 5.392767 TCTTAAGATGATATGTCGGCTCC 57.607 43.478 0.00 0.00 0.00 4.70
2963 5322 0.601841 GTCGGCTCCGTCTTTTGGAA 60.602 55.000 8.28 0.00 40.74 3.53
2966 5325 1.157585 GGCTCCGTCTTTTGGAAGTC 58.842 55.000 0.00 0.00 34.44 3.01
2991 5350 1.374252 GAGGTAGGGTGTGCGTGTG 60.374 63.158 0.00 0.00 0.00 3.82
2992 5351 2.095978 GAGGTAGGGTGTGCGTGTGT 62.096 60.000 0.00 0.00 0.00 3.72
3014 5375 5.983118 TGTGTGTTTATAGGATGAGTATGCG 59.017 40.000 0.00 0.00 0.00 4.73
3015 5376 4.988540 TGTGTTTATAGGATGAGTATGCGC 59.011 41.667 0.00 0.00 0.00 6.09
3051 7515 5.730802 CGCACGTGACGAATGTATTTTTATT 59.269 36.000 22.23 0.00 0.00 1.40
3090 7554 6.313905 CCTATACAAATCACTTCACACCACTC 59.686 42.308 0.00 0.00 0.00 3.51
3104 7568 0.602905 CCACTCGCGTTCCTTTCCTT 60.603 55.000 5.77 0.00 0.00 3.36
3105 7569 1.337447 CCACTCGCGTTCCTTTCCTTA 60.337 52.381 5.77 0.00 0.00 2.69
3127 7591 1.741706 CACAGGGCAAAGTCTAGCATG 59.258 52.381 0.00 0.00 0.00 4.06
3139 7603 5.039920 AGTCTAGCATGAACATGGCAATA 57.960 39.130 15.15 0.05 39.16 1.90
3147 7611 2.285083 GAACATGGCAATAGGTACGCA 58.715 47.619 0.00 0.00 0.00 5.24
3152 7616 0.730840 GGCAATAGGTACGCACAACC 59.269 55.000 0.00 0.00 37.27 3.77
3181 7645 3.250040 CCCGGCGAGTAAAAATCCTATTG 59.750 47.826 9.30 0.00 0.00 1.90
3275 7741 2.036098 TGGCACAGGGAGGCAATG 59.964 61.111 0.00 0.00 38.71 2.82
3278 7744 3.136123 CACAGGGAGGCAATGGCG 61.136 66.667 0.00 0.00 42.47 5.69
3279 7745 3.650950 ACAGGGAGGCAATGGCGT 61.651 61.111 0.00 0.00 42.47 5.68
3280 7746 2.297895 ACAGGGAGGCAATGGCGTA 61.298 57.895 0.00 0.00 42.47 4.42
3283 7749 2.516225 GGAGGCAATGGCGTACCC 60.516 66.667 0.00 0.00 42.47 3.69
3284 7750 2.895372 GAGGCAATGGCGTACCCG 60.895 66.667 0.00 0.00 42.47 5.28
3316 7789 7.037438 CCCATTGTAACATCCTGAATTTTGAG 58.963 38.462 0.00 0.00 0.00 3.02
3317 7790 7.309990 CCCATTGTAACATCCTGAATTTTGAGT 60.310 37.037 0.00 0.00 0.00 3.41
3360 7859 7.120726 TCCCGATTCTTTCTTGAATTACCTTTC 59.879 37.037 0.00 0.00 36.86 2.62
3370 7869 8.617290 TCTTGAATTACCTTTCTTGGACTTAC 57.383 34.615 0.00 0.00 0.00 2.34
3434 7951 8.961294 CAAAATTTTGTGAATTTTTGGTGTGA 57.039 26.923 20.57 0.00 39.77 3.58
3449 7966 5.021033 TGGTGTGACTCAAATGCAAAAAT 57.979 34.783 0.00 0.00 0.00 1.82
3453 7970 5.754890 GTGTGACTCAAATGCAAAAATTCCT 59.245 36.000 0.00 0.00 0.00 3.36
3491 8008 5.545063 ATTTTTGGTGGTTTTAGGACCTG 57.455 39.130 3.53 0.00 40.47 4.00
3492 8009 3.955524 TTTGGTGGTTTTAGGACCTGA 57.044 42.857 3.53 0.00 40.47 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.107897 TGCCCAACCTGCATACGTAG 60.108 55.000 0.08 0.00 32.85 3.51
5 6 0.391927 GTGCCCAACCTGCATACGTA 60.392 55.000 0.00 0.00 41.46 3.57
8 9 1.369091 CGAGTGCCCAACCTGCATAC 61.369 60.000 0.00 0.00 41.46 2.39
9 10 1.078497 CGAGTGCCCAACCTGCATA 60.078 57.895 0.00 0.00 41.46 3.14
10 11 2.360350 CGAGTGCCCAACCTGCAT 60.360 61.111 0.00 0.00 41.46 3.96
21 22 2.045926 AATGGTGGAGGCGAGTGC 60.046 61.111 0.00 0.00 41.71 4.40
22 23 1.450312 GGAATGGTGGAGGCGAGTG 60.450 63.158 0.00 0.00 0.00 3.51
23 24 2.990479 GGAATGGTGGAGGCGAGT 59.010 61.111 0.00 0.00 0.00 4.18
24 25 2.202932 CGGAATGGTGGAGGCGAG 60.203 66.667 0.00 0.00 0.00 5.03
25 26 3.781307 CCGGAATGGTGGAGGCGA 61.781 66.667 0.00 0.00 0.00 5.54
36 37 0.819259 CCGCCATCATTCACCGGAAT 60.819 55.000 9.46 0.00 44.51 3.01
37 38 1.451207 CCGCCATCATTCACCGGAA 60.451 57.895 9.46 0.00 41.34 4.30
38 39 2.189257 CCGCCATCATTCACCGGA 59.811 61.111 9.46 0.00 41.34 5.14
39 40 2.901840 CCCGCCATCATTCACCGG 60.902 66.667 0.00 0.00 38.71 5.28
40 41 3.585990 GCCCGCCATCATTCACCG 61.586 66.667 0.00 0.00 0.00 4.94
41 42 1.829533 ATGCCCGCCATCATTCACC 60.830 57.895 0.00 0.00 0.00 4.02
42 43 1.361271 CATGCCCGCCATCATTCAC 59.639 57.895 0.00 0.00 29.71 3.18
43 44 1.829096 CCATGCCCGCCATCATTCA 60.829 57.895 0.00 0.00 29.71 2.57
44 45 3.045142 CCATGCCCGCCATCATTC 58.955 61.111 0.00 0.00 29.71 2.67
45 46 3.228759 GCCATGCCCGCCATCATT 61.229 61.111 0.00 0.00 29.71 2.57
56 57 2.676471 AAACGGTCCTGGCCATGC 60.676 61.111 5.51 0.00 0.00 4.06
57 58 1.586154 GACAAACGGTCCTGGCCATG 61.586 60.000 5.51 2.84 40.83 3.66
58 59 1.303317 GACAAACGGTCCTGGCCAT 60.303 57.895 5.51 0.00 40.83 4.40
59 60 2.112297 GACAAACGGTCCTGGCCA 59.888 61.111 4.71 4.71 40.83 5.36
67 68 2.104281 ACAGGAGCTTTAGACAAACGGT 59.896 45.455 0.00 0.00 0.00 4.83
68 69 2.480419 CACAGGAGCTTTAGACAAACGG 59.520 50.000 0.00 0.00 0.00 4.44
69 70 2.096218 GCACAGGAGCTTTAGACAAACG 60.096 50.000 0.00 0.00 0.00 3.60
70 71 3.142174 AGCACAGGAGCTTTAGACAAAC 58.858 45.455 0.00 0.00 43.70 2.93
71 72 3.492102 AGCACAGGAGCTTTAGACAAA 57.508 42.857 0.00 0.00 43.70 2.83
99 100 1.741770 GAGCGGCGGTGACAATCTT 60.742 57.895 19.47 0.00 0.00 2.40
273 274 1.996191 GTTGTTCGTCTGCTCCAGATC 59.004 52.381 0.00 0.00 42.73 2.75
315 323 1.065551 GCTGATTCGATTTTTCCGGGG 59.934 52.381 0.00 0.00 0.00 5.73
316 324 2.017049 AGCTGATTCGATTTTTCCGGG 58.983 47.619 0.00 0.00 0.00 5.73
342 350 4.082081 AGCTGATTCGATTGCCATCAAAAA 60.082 37.500 0.00 0.00 35.56 1.94
343 351 3.444742 AGCTGATTCGATTGCCATCAAAA 59.555 39.130 0.00 0.00 35.56 2.44
344 352 3.018856 AGCTGATTCGATTGCCATCAAA 58.981 40.909 0.00 0.00 35.56 2.69
345 353 2.646930 AGCTGATTCGATTGCCATCAA 58.353 42.857 0.00 0.00 36.51 2.57
346 354 2.336945 AGCTGATTCGATTGCCATCA 57.663 45.000 0.00 0.00 0.00 3.07
347 355 3.705043 AAAGCTGATTCGATTGCCATC 57.295 42.857 0.00 0.00 0.00 3.51
348 356 3.444742 TGAAAAGCTGATTCGATTGCCAT 59.555 39.130 7.72 0.00 0.00 4.40
349 357 2.819019 TGAAAAGCTGATTCGATTGCCA 59.181 40.909 7.72 0.00 0.00 4.92
350 358 3.432782 CTGAAAAGCTGATTCGATTGCC 58.567 45.455 7.72 0.00 0.00 4.52
351 359 2.850647 GCTGAAAAGCTGATTCGATTGC 59.149 45.455 7.72 6.15 0.00 3.56
352 360 3.096461 CGCTGAAAAGCTGATTCGATTG 58.904 45.455 7.72 1.32 0.00 2.67
353 361 3.002791 TCGCTGAAAAGCTGATTCGATT 58.997 40.909 7.72 0.00 0.00 3.34
354 362 2.606725 CTCGCTGAAAAGCTGATTCGAT 59.393 45.455 7.72 0.00 0.00 3.59
355 363 1.995484 CTCGCTGAAAAGCTGATTCGA 59.005 47.619 7.72 2.95 0.00 3.71
356 364 1.995484 TCTCGCTGAAAAGCTGATTCG 59.005 47.619 7.72 4.76 0.00 3.34
357 365 2.222999 GCTCTCGCTGAAAAGCTGATTC 60.223 50.000 5.73 5.73 0.00 2.52
358 366 1.736681 GCTCTCGCTGAAAAGCTGATT 59.263 47.619 0.00 0.00 0.00 2.57
359 367 1.367659 GCTCTCGCTGAAAAGCTGAT 58.632 50.000 0.00 0.00 0.00 2.90
360 368 0.671781 GGCTCTCGCTGAAAAGCTGA 60.672 55.000 0.00 0.00 35.12 4.26
361 369 0.952497 TGGCTCTCGCTGAAAAGCTG 60.952 55.000 0.00 0.00 35.12 4.24
362 370 0.673022 CTGGCTCTCGCTGAAAAGCT 60.673 55.000 0.00 0.00 35.12 3.74
363 371 0.671781 TCTGGCTCTCGCTGAAAAGC 60.672 55.000 0.00 0.00 36.09 3.51
364 372 1.074752 GTCTGGCTCTCGCTGAAAAG 58.925 55.000 0.00 0.00 36.09 2.27
365 373 0.681733 AGTCTGGCTCTCGCTGAAAA 59.318 50.000 0.00 0.00 36.09 2.29
379 387 1.202758 TGTTTGGGCCACAGTAGTCTG 60.203 52.381 5.23 0.00 46.18 3.51
440 448 0.698818 AGGGCCTTTAGGTTCCTGTG 59.301 55.000 0.00 0.00 38.73 3.66
442 450 3.265995 TCTTTAGGGCCTTTAGGTTCCTG 59.734 47.826 13.45 6.50 39.80 3.86
443 451 3.538387 TCTTTAGGGCCTTTAGGTTCCT 58.462 45.455 13.45 14.22 41.41 3.36
445 453 5.773680 AGTTTTCTTTAGGGCCTTTAGGTTC 59.226 40.000 13.45 0.00 37.57 3.62
446 454 5.538813 CAGTTTTCTTTAGGGCCTTTAGGTT 59.461 40.000 13.45 0.00 37.57 3.50
447 455 5.077564 CAGTTTTCTTTAGGGCCTTTAGGT 58.922 41.667 13.45 0.00 37.57 3.08
448 456 4.462834 CCAGTTTTCTTTAGGGCCTTTAGG 59.537 45.833 13.45 0.58 38.53 2.69
449 457 5.077564 ACCAGTTTTCTTTAGGGCCTTTAG 58.922 41.667 13.45 9.98 0.00 1.85
450 458 5.069518 ACCAGTTTTCTTTAGGGCCTTTA 57.930 39.130 13.45 0.00 0.00 1.85
463 502 8.130469 TCGTTTACTTTAATTGGACCAGTTTTC 58.870 33.333 7.63 0.00 0.00 2.29
468 507 8.040716 AGAATCGTTTACTTTAATTGGACCAG 57.959 34.615 0.00 0.00 0.00 4.00
473 512 7.625828 AGGGAGAATCGTTTACTTTAATTGG 57.374 36.000 0.00 0.00 34.37 3.16
476 515 8.253113 TCGTTAGGGAGAATCGTTTACTTTAAT 58.747 33.333 0.00 0.00 34.37 1.40
483 522 5.359009 AGTGATCGTTAGGGAGAATCGTTTA 59.641 40.000 0.00 0.00 34.37 2.01
516 555 0.400213 AACGGGGATCAGTGCTGAAA 59.600 50.000 5.95 0.00 43.58 2.69
659 2826 1.000955 TCTTTGTCAACGCTCCTCCTC 59.999 52.381 0.00 0.00 0.00 3.71
660 2827 1.048601 TCTTTGTCAACGCTCCTCCT 58.951 50.000 0.00 0.00 0.00 3.69
662 2829 1.195674 GCTTCTTTGTCAACGCTCCTC 59.804 52.381 0.00 0.00 0.00 3.71
681 2848 1.317431 TGCTCACATGGCCATTCTGC 61.317 55.000 17.92 17.80 0.00 4.26
682 2849 0.738975 CTGCTCACATGGCCATTCTG 59.261 55.000 17.92 14.56 0.00 3.02
683 2850 0.622136 TCTGCTCACATGGCCATTCT 59.378 50.000 17.92 0.13 0.00 2.40
684 2851 1.022735 CTCTGCTCACATGGCCATTC 58.977 55.000 17.92 3.65 0.00 2.67
685 2852 0.330604 ACTCTGCTCACATGGCCATT 59.669 50.000 17.92 4.93 0.00 3.16
686 2853 0.107312 GACTCTGCTCACATGGCCAT 60.107 55.000 14.09 14.09 0.00 4.40
687 2854 1.297689 GACTCTGCTCACATGGCCA 59.702 57.895 8.56 8.56 0.00 5.36
688 2855 0.321919 TTGACTCTGCTCACATGGCC 60.322 55.000 0.00 0.00 0.00 5.36
689 2856 0.801251 GTTGACTCTGCTCACATGGC 59.199 55.000 0.00 0.00 0.00 4.40
690 2857 1.073964 CGTTGACTCTGCTCACATGG 58.926 55.000 0.00 0.00 0.00 3.66
691 2858 0.441533 GCGTTGACTCTGCTCACATG 59.558 55.000 0.00 0.00 0.00 3.21
692 2859 0.033920 TGCGTTGACTCTGCTCACAT 59.966 50.000 0.00 0.00 0.00 3.21
699 2866 1.835483 GCACACCTGCGTTGACTCTG 61.835 60.000 0.00 0.00 32.44 3.35
701 2868 2.607892 GGCACACCTGCGTTGACTC 61.608 63.158 0.00 0.00 45.31 3.36
748 2915 1.138228 GGTTGGGTCTGGGTAGGGTT 61.138 60.000 0.00 0.00 0.00 4.11
763 2930 4.351938 TCGTGTCGGCCTCGGTTG 62.352 66.667 0.00 0.00 36.95 3.77
764 2931 4.353437 GTCGTGTCGGCCTCGGTT 62.353 66.667 0.00 0.00 36.95 4.44
775 2942 2.500229 CAAAATAGTGGGGTGTCGTGT 58.500 47.619 0.00 0.00 0.00 4.49
778 2945 0.808755 GGCAAAATAGTGGGGTGTCG 59.191 55.000 0.00 0.00 0.00 4.35
780 2947 1.710809 AGAGGCAAAATAGTGGGGTGT 59.289 47.619 0.00 0.00 0.00 4.16
781 2948 2.094675 CAGAGGCAAAATAGTGGGGTG 58.905 52.381 0.00 0.00 0.00 4.61
782 2949 1.005924 CCAGAGGCAAAATAGTGGGGT 59.994 52.381 0.00 0.00 0.00 4.95
783 2950 1.767759 CCAGAGGCAAAATAGTGGGG 58.232 55.000 0.00 0.00 0.00 4.96
816 2991 1.649815 CGCCTCTCGGTGCTACTAG 59.350 63.158 0.00 0.00 33.35 2.57
834 3009 3.102668 GATGCGCGAGATCGAGGC 61.103 66.667 12.10 8.89 43.02 4.70
849 3039 3.286694 AAGGCACACCCGCATGGAT 62.287 57.895 0.00 0.00 39.21 3.41
851 3041 3.443045 GAAGGCACACCCGCATGG 61.443 66.667 0.00 0.00 39.21 3.66
853 3043 4.740822 GGGAAGGCACACCCGCAT 62.741 66.667 0.00 0.00 37.45 4.73
985 3183 1.448013 GATCTTATAGGCCGGCCGC 60.448 63.158 38.88 17.88 41.95 6.53
1003 3201 3.450115 GACCGTCGAGGAGGTGGG 61.450 72.222 11.34 0.00 45.00 4.61
1012 3210 0.518636 CGGAGTTACTTGACCGTCGA 59.481 55.000 3.24 0.00 40.42 4.20
1073 3322 3.957535 GGGCGCCATTGAGCATCG 61.958 66.667 30.85 0.00 39.30 3.84
1162 3411 5.237815 TGATTAACCATGCTAGGAATAGCG 58.762 41.667 1.88 0.00 45.61 4.26
1190 3439 6.598064 ACAATGCTAAGACAATGTACCTAACC 59.402 38.462 0.00 0.00 31.97 2.85
1191 3440 7.549488 AGACAATGCTAAGACAATGTACCTAAC 59.451 37.037 0.00 0.00 33.87 2.34
1193 3442 7.041721 CAGACAATGCTAAGACAATGTACCTA 58.958 38.462 0.00 0.00 33.87 3.08
1194 3443 5.877012 CAGACAATGCTAAGACAATGTACCT 59.123 40.000 0.00 0.00 33.87 3.08
1195 3444 5.874810 TCAGACAATGCTAAGACAATGTACC 59.125 40.000 0.00 0.00 33.87 3.34
1196 3445 6.368791 TGTCAGACAATGCTAAGACAATGTAC 59.631 38.462 0.00 0.00 33.87 2.90
1530 3811 1.978617 GGGGACGACCGACACCTTA 60.979 63.158 5.95 0.00 41.60 2.69
1746 4030 3.241530 TTCTCACTGCGGGTGGCT 61.242 61.111 9.26 0.00 45.38 4.75
1759 4043 5.710613 GAGATCATCGGAACTTTGTTCTC 57.289 43.478 9.81 3.11 31.61 2.87
1774 4058 2.428530 TGCTAAGCACAGACGAGATCAT 59.571 45.455 0.00 0.00 31.71 2.45
1775 4059 1.818674 TGCTAAGCACAGACGAGATCA 59.181 47.619 0.00 0.00 31.71 2.92
1788 4072 4.613031 GTCACAAAGAATCGTTTGCTAAGC 59.387 41.667 5.51 0.00 40.49 3.09
2352 4692 2.751436 AGCATGCGGGCGTGAAAT 60.751 55.556 16.59 0.00 39.27 2.17
2455 4795 6.613755 TTTCTTACGAAAAGAAGGAACAGG 57.386 37.500 14.27 0.00 37.54 4.00
2461 4801 7.201418 GGTCGACTATTTCTTACGAAAAGAAGG 60.201 40.741 16.46 11.89 42.03 3.46
2534 4875 9.717892 CTGATGATTTGATCTGTTTTCTGTATG 57.282 33.333 0.00 0.00 0.00 2.39
2536 4877 8.853077 ACTGATGATTTGATCTGTTTTCTGTA 57.147 30.769 0.00 0.00 32.33 2.74
2554 4896 5.874261 TCATGCTCGTGAATTAAACTGATGA 59.126 36.000 0.00 0.00 0.00 2.92
2558 4901 4.783036 CGTTCATGCTCGTGAATTAAACTG 59.217 41.667 7.67 0.00 39.99 3.16
2559 4902 4.451096 ACGTTCATGCTCGTGAATTAAACT 59.549 37.500 12.61 0.00 39.99 2.66
2598 4941 4.593597 TTCGCATAAAAGACATTCGTCC 57.406 40.909 0.00 0.00 43.73 4.79
2613 4956 3.761218 TCCAACCACATATTGTTTCGCAT 59.239 39.130 0.00 0.00 0.00 4.73
2620 4963 3.386932 AGCCATCCAACCACATATTGT 57.613 42.857 0.00 0.00 0.00 2.71
2624 4967 2.172505 CACCTAGCCATCCAACCACATA 59.827 50.000 0.00 0.00 0.00 2.29
2639 4982 3.542648 TGAGATACGACTGTCCACCTAG 58.457 50.000 1.55 0.00 0.00 3.02
2662 5021 2.756760 CCATGACTTGAAACCTGATGGG 59.243 50.000 0.00 0.00 41.89 4.00
2671 5030 1.872952 CGTGAGCACCATGACTTGAAA 59.127 47.619 0.00 0.00 33.60 2.69
2680 5039 0.606401 CTTGAACCCGTGAGCACCAT 60.606 55.000 0.00 0.00 0.00 3.55
2693 5052 3.056328 GCCCGGCAGGTCTTGAAC 61.056 66.667 3.91 0.00 38.26 3.18
2708 5067 4.773117 GACTGACGACCGACCGCC 62.773 72.222 0.00 0.00 0.00 6.13
2709 5068 4.773117 GGACTGACGACCGACCGC 62.773 72.222 0.00 0.00 0.00 5.68
2710 5069 3.036783 GAGGACTGACGACCGACCG 62.037 68.421 0.00 0.00 0.00 4.79
2711 5070 2.876219 GAGGACTGACGACCGACC 59.124 66.667 0.00 0.00 0.00 4.79
2713 5072 2.532465 ATCCGAGGACTGACGACCGA 62.532 60.000 0.00 0.00 0.00 4.69
2714 5073 1.654954 AATCCGAGGACTGACGACCG 61.655 60.000 0.00 0.00 0.00 4.79
2715 5074 0.531200 AAATCCGAGGACTGACGACC 59.469 55.000 0.00 0.00 0.00 4.79
2716 5075 1.630148 CAAATCCGAGGACTGACGAC 58.370 55.000 0.00 0.00 0.00 4.34
2718 5077 0.389817 TGCAAATCCGAGGACTGACG 60.390 55.000 7.11 0.00 0.00 4.35
2719 5078 1.363744 CTGCAAATCCGAGGACTGAC 58.636 55.000 7.11 1.05 0.00 3.51
2720 5079 0.391661 GCTGCAAATCCGAGGACTGA 60.392 55.000 7.11 0.00 0.00 3.41
2721 5080 0.392193 AGCTGCAAATCCGAGGACTG 60.392 55.000 1.02 0.00 0.00 3.51
2722 5081 1.134670 GTAGCTGCAAATCCGAGGACT 60.135 52.381 1.02 0.00 0.00 3.85
2724 5083 0.179111 CGTAGCTGCAAATCCGAGGA 60.179 55.000 1.02 0.00 0.00 3.71
2725 5084 0.460284 ACGTAGCTGCAAATCCGAGG 60.460 55.000 1.02 0.00 0.00 4.63
2726 5085 0.924090 GACGTAGCTGCAAATCCGAG 59.076 55.000 1.02 0.00 0.00 4.63
2727 5086 0.800683 CGACGTAGCTGCAAATCCGA 60.801 55.000 1.02 0.00 0.00 4.55
2728 5087 1.631072 CGACGTAGCTGCAAATCCG 59.369 57.895 1.02 0.00 0.00 4.18
2729 5088 1.348594 GCGACGTAGCTGCAAATCC 59.651 57.895 13.82 0.00 0.00 3.01
2738 5097 1.063811 GACTACCCAGCGACGTAGC 59.936 63.158 13.21 13.21 36.26 3.58
2739 5098 1.351012 CGACTACCCAGCGACGTAG 59.649 63.158 0.00 0.00 38.34 3.51
2740 5099 2.108514 CCGACTACCCAGCGACGTA 61.109 63.158 0.00 0.00 0.00 3.57
2742 5101 3.392595 GACCGACTACCCAGCGACG 62.393 68.421 0.00 0.00 0.00 5.12
2743 5102 2.488820 GACCGACTACCCAGCGAC 59.511 66.667 0.00 0.00 0.00 5.19
2744 5103 3.129502 CGACCGACTACCCAGCGA 61.130 66.667 0.00 0.00 0.00 4.93
2745 5104 4.189188 CCGACCGACTACCCAGCG 62.189 72.222 0.00 0.00 0.00 5.18
2746 5105 4.509737 GCCGACCGACTACCCAGC 62.510 72.222 0.00 0.00 0.00 4.85
2747 5106 4.189188 CGCCGACCGACTACCCAG 62.189 72.222 0.00 0.00 40.02 4.45
2750 5109 4.487412 CACCGCCGACCGACTACC 62.487 72.222 0.00 0.00 40.02 3.18
2751 5110 4.487412 CCACCGCCGACCGACTAC 62.487 72.222 0.00 0.00 40.02 2.73
2769 5128 2.932234 AAGAGACCTCACACCGCCG 61.932 63.158 0.00 0.00 0.00 6.46
2770 5129 1.374758 CAAGAGACCTCACACCGCC 60.375 63.158 0.00 0.00 0.00 6.13
2771 5130 1.374758 CCAAGAGACCTCACACCGC 60.375 63.158 0.00 0.00 0.00 5.68
2772 5131 0.038159 GTCCAAGAGACCTCACACCG 60.038 60.000 0.00 0.00 39.84 4.94
2773 5132 1.001406 CTGTCCAAGAGACCTCACACC 59.999 57.143 0.00 0.00 45.68 4.16
2774 5133 1.689273 ACTGTCCAAGAGACCTCACAC 59.311 52.381 0.00 0.00 45.68 3.82
2775 5134 1.688735 CACTGTCCAAGAGACCTCACA 59.311 52.381 0.00 0.00 45.68 3.58
2776 5135 1.964223 TCACTGTCCAAGAGACCTCAC 59.036 52.381 0.00 0.00 45.68 3.51
2777 5136 1.964223 GTCACTGTCCAAGAGACCTCA 59.036 52.381 0.00 0.00 45.68 3.86
2778 5137 2.734276 GTCACTGTCCAAGAGACCTC 57.266 55.000 0.00 0.00 45.68 3.85
2781 5140 0.321996 GGGGTCACTGTCCAAGAGAC 59.678 60.000 0.00 0.00 43.55 3.36
2782 5141 0.105194 TGGGGTCACTGTCCAAGAGA 60.105 55.000 0.00 0.00 0.00 3.10
2783 5142 0.764890 TTGGGGTCACTGTCCAAGAG 59.235 55.000 0.00 0.00 35.83 2.85
2784 5143 1.444933 ATTGGGGTCACTGTCCAAGA 58.555 50.000 5.16 0.00 42.87 3.02
2785 5144 2.162681 GAATTGGGGTCACTGTCCAAG 58.837 52.381 5.16 0.00 42.87 3.61
2786 5145 1.203001 GGAATTGGGGTCACTGTCCAA 60.203 52.381 1.71 1.71 43.62 3.53
2787 5146 0.404040 GGAATTGGGGTCACTGTCCA 59.596 55.000 0.00 0.00 0.00 4.02
2788 5147 0.404040 TGGAATTGGGGTCACTGTCC 59.596 55.000 0.00 0.00 0.00 4.02
2789 5148 2.094675 CATGGAATTGGGGTCACTGTC 58.905 52.381 0.00 0.00 0.00 3.51
2790 5149 1.272648 CCATGGAATTGGGGTCACTGT 60.273 52.381 5.56 0.00 32.80 3.55
2791 5150 1.005805 TCCATGGAATTGGGGTCACTG 59.994 52.381 13.46 0.00 37.37 3.66
2792 5151 1.285962 CTCCATGGAATTGGGGTCACT 59.714 52.381 17.00 0.00 37.37 3.41
2793 5152 1.686115 CCTCCATGGAATTGGGGTCAC 60.686 57.143 17.00 0.00 35.27 3.67
2794 5153 0.630673 CCTCCATGGAATTGGGGTCA 59.369 55.000 17.00 0.00 35.27 4.02
2795 5154 0.631212 ACCTCCATGGAATTGGGGTC 59.369 55.000 17.00 0.00 36.27 4.46
2796 5155 0.336048 CACCTCCATGGAATTGGGGT 59.664 55.000 17.00 16.00 39.49 4.95
2797 5156 0.336048 ACACCTCCATGGAATTGGGG 59.664 55.000 17.00 17.16 39.71 4.96
2798 5157 1.477553 CACACCTCCATGGAATTGGG 58.522 55.000 17.00 15.69 39.71 4.12
2799 5158 1.005805 TCCACACCTCCATGGAATTGG 59.994 52.381 17.00 16.07 42.14 3.16
2800 5159 2.025981 TCTCCACACCTCCATGGAATTG 60.026 50.000 17.00 17.14 44.42 2.32
2801 5160 2.278245 TCTCCACACCTCCATGGAATT 58.722 47.619 17.00 2.01 44.42 2.17
2802 5161 1.971149 TCTCCACACCTCCATGGAAT 58.029 50.000 17.00 3.90 44.42 3.01
2803 5162 1.561076 CATCTCCACACCTCCATGGAA 59.439 52.381 17.00 0.00 44.42 3.53
2804 5163 1.206878 CATCTCCACACCTCCATGGA 58.793 55.000 15.27 15.27 42.88 3.41
2805 5164 0.182061 CCATCTCCACACCTCCATGG 59.818 60.000 4.97 4.97 42.93 3.66
2806 5165 0.182061 CCCATCTCCACACCTCCATG 59.818 60.000 0.00 0.00 0.00 3.66
2807 5166 1.639635 GCCCATCTCCACACCTCCAT 61.640 60.000 0.00 0.00 0.00 3.41
2808 5167 2.300967 GCCCATCTCCACACCTCCA 61.301 63.158 0.00 0.00 0.00 3.86
2809 5168 0.691078 TAGCCCATCTCCACACCTCC 60.691 60.000 0.00 0.00 0.00 4.30
2810 5169 0.466124 GTAGCCCATCTCCACACCTC 59.534 60.000 0.00 0.00 0.00 3.85
2811 5170 1.330655 CGTAGCCCATCTCCACACCT 61.331 60.000 0.00 0.00 0.00 4.00
2812 5171 1.144057 CGTAGCCCATCTCCACACC 59.856 63.158 0.00 0.00 0.00 4.16
2813 5172 4.835927 CGTAGCCCATCTCCACAC 57.164 61.111 0.00 0.00 0.00 3.82
2826 5185 1.290203 AGATTTGCATCCACGCGTAG 58.710 50.000 13.44 4.25 33.35 3.51
2827 5186 1.396648 CAAGATTTGCATCCACGCGTA 59.603 47.619 13.44 0.00 33.35 4.42
2828 5187 0.168788 CAAGATTTGCATCCACGCGT 59.831 50.000 5.58 5.58 33.35 6.01
2829 5188 2.934277 CAAGATTTGCATCCACGCG 58.066 52.632 3.53 3.53 33.35 6.01
2839 5198 3.054878 GGCAGAAGTTGTGCAAGATTTG 58.945 45.455 24.59 0.00 43.12 2.32
2840 5199 2.961062 AGGCAGAAGTTGTGCAAGATTT 59.039 40.909 24.59 2.19 43.12 2.17
2841 5200 2.295349 CAGGCAGAAGTTGTGCAAGATT 59.705 45.455 24.59 3.81 43.12 2.40
2842 5201 1.884579 CAGGCAGAAGTTGTGCAAGAT 59.115 47.619 24.59 6.41 43.12 2.40
2843 5202 1.311859 CAGGCAGAAGTTGTGCAAGA 58.688 50.000 24.59 0.00 43.12 3.02
2844 5203 0.313043 CCAGGCAGAAGTTGTGCAAG 59.687 55.000 24.59 16.00 43.12 4.01
2845 5204 0.395586 ACCAGGCAGAAGTTGTGCAA 60.396 50.000 24.59 0.00 43.12 4.08
2846 5205 0.819259 GACCAGGCAGAAGTTGTGCA 60.819 55.000 24.59 0.00 43.12 4.57
2847 5206 1.845809 CGACCAGGCAGAAGTTGTGC 61.846 60.000 16.33 16.33 40.42 4.57
2848 5207 1.230635 CCGACCAGGCAGAAGTTGTG 61.231 60.000 0.00 0.00 0.00 3.33
2849 5208 1.071471 CCGACCAGGCAGAAGTTGT 59.929 57.895 0.00 0.00 0.00 3.32
2850 5209 3.972227 CCGACCAGGCAGAAGTTG 58.028 61.111 0.00 0.00 0.00 3.16
2859 5218 2.280389 CCATCATCGCCGACCAGG 60.280 66.667 0.00 0.00 44.97 4.45
2860 5219 2.969238 GCCATCATCGCCGACCAG 60.969 66.667 0.00 0.00 0.00 4.00
2861 5220 3.780173 TGCCATCATCGCCGACCA 61.780 61.111 0.00 0.00 0.00 4.02
2862 5221 3.272334 GTGCCATCATCGCCGACC 61.272 66.667 0.00 0.00 0.00 4.79
2863 5222 3.272334 GGTGCCATCATCGCCGAC 61.272 66.667 0.00 0.00 0.00 4.79
2864 5223 4.545706 GGGTGCCATCATCGCCGA 62.546 66.667 0.00 0.00 35.03 5.54
2865 5224 4.552365 AGGGTGCCATCATCGCCG 62.552 66.667 0.00 0.00 35.03 6.46
2866 5225 2.124151 AAGGGTGCCATCATCGCC 60.124 61.111 0.00 0.00 0.00 5.54
2867 5226 0.820891 ATCAAGGGTGCCATCATCGC 60.821 55.000 0.00 0.00 0.00 4.58
2868 5227 0.949397 CATCAAGGGTGCCATCATCG 59.051 55.000 0.00 0.00 0.00 3.84
2869 5228 1.952296 GACATCAAGGGTGCCATCATC 59.048 52.381 0.00 0.00 0.00 2.92
2870 5229 1.285667 TGACATCAAGGGTGCCATCAT 59.714 47.619 0.00 0.00 0.00 2.45
2871 5230 0.697658 TGACATCAAGGGTGCCATCA 59.302 50.000 0.00 0.00 0.00 3.07
2872 5231 1.952296 GATGACATCAAGGGTGCCATC 59.048 52.381 10.67 0.00 0.00 3.51
2873 5232 1.410648 GGATGACATCAAGGGTGCCAT 60.411 52.381 17.08 0.00 0.00 4.40
2874 5233 0.034186 GGATGACATCAAGGGTGCCA 60.034 55.000 17.08 0.00 0.00 4.92
2875 5234 0.753111 GGGATGACATCAAGGGTGCC 60.753 60.000 17.08 3.60 0.00 5.01
2876 5235 0.753111 GGGGATGACATCAAGGGTGC 60.753 60.000 17.08 0.00 0.00 5.01
2877 5236 0.464373 CGGGGATGACATCAAGGGTG 60.464 60.000 17.08 0.00 0.00 4.61
2878 5237 0.914417 ACGGGGATGACATCAAGGGT 60.914 55.000 17.08 6.35 0.00 4.34
2879 5238 0.179045 GACGGGGATGACATCAAGGG 60.179 60.000 17.08 5.77 0.00 3.95
2880 5239 0.530650 CGACGGGGATGACATCAAGG 60.531 60.000 17.08 7.41 0.00 3.61
2881 5240 0.459899 TCGACGGGGATGACATCAAG 59.540 55.000 17.08 9.57 0.00 3.02
2882 5241 0.174845 GTCGACGGGGATGACATCAA 59.825 55.000 17.08 0.00 32.91 2.57
2883 5242 0.683179 AGTCGACGGGGATGACATCA 60.683 55.000 17.08 0.00 35.09 3.07
2884 5243 1.001597 GTAGTCGACGGGGATGACATC 60.002 57.143 10.46 6.91 35.09 3.06
2885 5244 1.030457 GTAGTCGACGGGGATGACAT 58.970 55.000 10.46 0.00 35.09 3.06
2886 5245 1.033746 GGTAGTCGACGGGGATGACA 61.034 60.000 10.46 0.00 35.09 3.58
2887 5246 1.033746 TGGTAGTCGACGGGGATGAC 61.034 60.000 10.46 1.17 0.00 3.06
2888 5247 0.750546 CTGGTAGTCGACGGGGATGA 60.751 60.000 10.46 0.00 0.00 2.92
2889 5248 1.734137 CTGGTAGTCGACGGGGATG 59.266 63.158 10.46 0.00 0.00 3.51
2890 5249 1.455217 CCTGGTAGTCGACGGGGAT 60.455 63.158 10.46 0.00 0.00 3.85
2892 5251 3.834799 GCCTGGTAGTCGACGGGG 61.835 72.222 10.46 9.96 0.00 5.73
2895 5254 2.814183 AAAGCGCCTGGTAGTCGACG 62.814 60.000 10.46 0.00 0.00 5.12
2897 5256 0.669318 CAAAAGCGCCTGGTAGTCGA 60.669 55.000 2.29 0.00 0.00 4.20
2905 5264 0.040067 GAAGTCACCAAAAGCGCCTG 60.040 55.000 2.29 0.00 0.00 4.85
2915 5274 7.623630 TCATCTTAAGATTGATGAAGTCACCA 58.376 34.615 15.49 0.00 43.90 4.17
2924 5283 7.548427 AGCCGACATATCATCTTAAGATTGATG 59.452 37.037 25.11 22.61 40.82 3.07
2925 5284 7.619050 AGCCGACATATCATCTTAAGATTGAT 58.381 34.615 22.64 22.64 31.21 2.57
2926 5285 6.997655 AGCCGACATATCATCTTAAGATTGA 58.002 36.000 15.49 15.45 31.21 2.57
2927 5286 6.312426 GGAGCCGACATATCATCTTAAGATTG 59.688 42.308 15.49 13.25 31.21 2.67
2933 5292 3.154710 ACGGAGCCGACATATCATCTTA 58.845 45.455 16.83 0.00 42.83 2.10
2945 5304 0.320421 CTTCCAAAAGACGGAGCCGA 60.320 55.000 16.83 0.00 43.21 5.54
2963 5322 2.315155 ACACCCTACCTCTATGTGGACT 59.685 50.000 0.00 0.00 0.00 3.85
2966 5325 1.139058 GCACACCCTACCTCTATGTGG 59.861 57.143 4.97 0.00 40.79 4.17
2991 5350 5.107453 GCGCATACTCATCCTATAAACACAC 60.107 44.000 0.30 0.00 0.00 3.82
2992 5351 4.988540 GCGCATACTCATCCTATAAACACA 59.011 41.667 0.30 0.00 0.00 3.72
3015 5376 2.588539 GTCACGTGCGCTCATATATACG 59.411 50.000 11.67 10.22 37.54 3.06
3090 7554 2.343101 TGTGATAAGGAAAGGAACGCG 58.657 47.619 3.53 3.53 0.00 6.01
3104 7568 2.837591 TGCTAGACTTTGCCCTGTGATA 59.162 45.455 0.00 0.00 0.00 2.15
3105 7569 1.630369 TGCTAGACTTTGCCCTGTGAT 59.370 47.619 0.00 0.00 0.00 3.06
3127 7591 2.031683 GTGCGTACCTATTGCCATGTTC 59.968 50.000 0.00 0.00 0.00 3.18
3278 7744 3.412237 ACAATGGGTATATGCGGGTAC 57.588 47.619 0.00 0.00 0.00 3.34
3279 7745 4.347292 TGTTACAATGGGTATATGCGGGTA 59.653 41.667 0.00 0.00 0.00 3.69
3280 7746 3.136809 TGTTACAATGGGTATATGCGGGT 59.863 43.478 0.00 0.00 0.00 5.28
3283 7749 5.122239 CAGGATGTTACAATGGGTATATGCG 59.878 44.000 0.00 0.00 0.00 4.73
3284 7750 6.237901 TCAGGATGTTACAATGGGTATATGC 58.762 40.000 0.00 0.00 37.40 3.14
3285 7751 8.868522 ATTCAGGATGTTACAATGGGTATATG 57.131 34.615 0.00 0.00 37.40 1.78
3286 7752 9.881773 AAATTCAGGATGTTACAATGGGTATAT 57.118 29.630 0.00 0.00 37.40 0.86
3287 7753 9.707957 AAAATTCAGGATGTTACAATGGGTATA 57.292 29.630 0.00 0.00 37.40 1.47
3324 7797 3.942130 AAGAATCGGGAAAAGGCAAAG 57.058 42.857 0.00 0.00 0.00 2.77
3327 7800 3.154827 AGAAAGAATCGGGAAAAGGCA 57.845 42.857 0.00 0.00 0.00 4.75
3328 7801 3.506067 TCAAGAAAGAATCGGGAAAAGGC 59.494 43.478 0.00 0.00 0.00 4.35
3329 7802 5.705609 TTCAAGAAAGAATCGGGAAAAGG 57.294 39.130 0.00 0.00 0.00 3.11
3330 7803 7.755373 GGTAATTCAAGAAAGAATCGGGAAAAG 59.245 37.037 0.00 0.00 37.24 2.27
3337 7836 9.334693 CAAGAAAGGTAATTCAAGAAAGAATCG 57.665 33.333 0.00 0.00 37.24 3.34
3370 7869 7.201688 CCCAATTTCAAGGTGTTTTTAGTTTGG 60.202 37.037 0.00 0.00 0.00 3.28
3416 7933 5.651387 TGAGTCACACCAAAAATTCACAA 57.349 34.783 0.00 0.00 0.00 3.33
3433 7950 6.449698 TCTCAGGAATTTTTGCATTTGAGTC 58.550 36.000 0.00 0.00 34.11 3.36
3434 7951 6.409524 TCTCAGGAATTTTTGCATTTGAGT 57.590 33.333 0.00 0.00 34.11 3.41
3449 7966 0.768221 ACACCCAAGCCTCTCAGGAA 60.768 55.000 0.00 0.00 37.67 3.36
3453 7970 3.806949 AAAATACACCCAAGCCTCTCA 57.193 42.857 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.